Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0950730 | XP_013452015.1 | 71.951 | 328 | 63 | 3 | 1 | 299 | 1 | 328 | 2.31e-164 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0950730 | sp|Q94BZ5|HSFA5_ARATH | 53.755 | 253 | 107 | 3 | 1 | 243 | 1 | 253 | 6.39e-86 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0950730 | A0A072UAD0 | 71.951 | 328 | 63 | 3 | 1 | 299 | 1 | 328 | 1.11e-164 | 470 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0950730 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0950730 | MtrunA17_Chr6g0467041 | 71.951 | 328 | 63 | 3 | 1 | 299 | 1 | 328 | 2.13e-168 | 470 |
| Msa0950730 | MtrunA17_Chr8g0378061 | 75.899 | 278 | 24 | 2 | 23 | 257 | 23 | 300 | 3.84e-146 | 419 |
| Msa0950730 | MtrunA17_Chr8g0378061 | 86.364 | 44 | 6 | 0 | 257 | 300 | 414 | 457 | 4.16e-18 | 84.3 |
| Msa0950730 | MtrunA17_Chr2g0330821 | 53.746 | 307 | 117 | 8 | 1 | 298 | 60 | 350 | 5.63e-97 | 290 |
| Msa0950730 | MtrunA17_Chr2g0330841 | 53.361 | 238 | 61 | 4 | 64 | 257 | 29 | 260 | 2.36e-70 | 223 |
| Msa0950730 | MtrunA17_Chr5g0410881 | 49.763 | 211 | 92 | 4 | 22 | 218 | 32 | 242 | 1.75e-63 | 208 |
| Msa0950730 | MtrunA17_Chr8g0379701 | 41.638 | 293 | 147 | 7 | 15 | 294 | 5 | 286 | 3.20e-60 | 197 |
| Msa0950730 | MtrunA17_Chr4g0039891 | 44.019 | 209 | 105 | 3 | 20 | 216 | 10 | 218 | 2.34e-54 | 184 |
| Msa0950730 | MtrunA17_Chr1g0204741 | 42.601 | 223 | 111 | 6 | 7 | 215 | 20 | 239 | 1.13e-50 | 170 |
| Msa0950730 | MtrunA17_Chr7g0260331 | 45.192 | 208 | 102 | 5 | 19 | 215 | 46 | 252 | 5.89e-50 | 169 |
| Msa0950730 | MtrunA17_Chr3g0135831 | 42.647 | 204 | 111 | 3 | 19 | 217 | 43 | 245 | 9.98e-50 | 169 |
| Msa0950730 | MtrunA17_Chr1g0185131 | 39.819 | 221 | 113 | 4 | 22 | 233 | 32 | 241 | 5.57e-46 | 158 |
| Msa0950730 | MtrunA17_Chr3g0134031 | 65.686 | 102 | 35 | 0 | 12 | 113 | 14 | 115 | 4.32e-45 | 156 |
| Msa0950730 | MtrunA17_Chr4g0071051 | 43.011 | 186 | 102 | 2 | 19 | 203 | 98 | 280 | 9.23e-45 | 157 |
| Msa0950730 | MtrunA17_Chr8g0392001 | 47.179 | 195 | 90 | 6 | 20 | 201 | 20 | 214 | 2.24e-44 | 154 |
| Msa0950730 | MtrunA17_Chr5g0402291 | 62.264 | 106 | 40 | 0 | 17 | 122 | 4 | 109 | 5.91e-43 | 149 |
| Msa0950730 | MtrunA17_Chr6g0485571 | 40.686 | 204 | 114 | 2 | 20 | 219 | 9 | 209 | 3.21e-42 | 148 |
| Msa0950730 | MtrunA17_Chr5g0441531 | 67.742 | 93 | 30 | 0 | 21 | 113 | 24 | 116 | 4.07e-42 | 145 |
| Msa0950730 | MtrunA17_Chr5g0397881 | 58.333 | 108 | 45 | 0 | 6 | 113 | 8 | 115 | 1.93e-41 | 147 |
| Msa0950730 | MtrunA17_Chr2g0284481 | 57.407 | 108 | 46 | 0 | 12 | 119 | 5 | 112 | 1.41e-40 | 145 |
| Msa0950730 | MtrunA17_Chr6g0472421 | 63.441 | 93 | 34 | 0 | 21 | 113 | 32 | 124 | 1.04e-38 | 139 |
| Msa0950730 | MtrunA17_Chr7g0257331 | 60.215 | 93 | 37 | 0 | 21 | 113 | 21 | 113 | 1.44e-38 | 135 |
| Msa0950730 | MtrunA17_Chr1g0203601 | 61.053 | 95 | 37 | 0 | 21 | 115 | 17 | 111 | 7.31e-38 | 136 |
| Msa0950730 | MtrunA17_Chr4g0047421 | 56.701 | 97 | 38 | 1 | 21 | 113 | 32 | 128 | 3.07e-34 | 124 |
| Msa0950730 | MtrunA17_Chr8g0375041 | 56.989 | 93 | 40 | 0 | 21 | 113 | 8 | 100 | 6.25e-33 | 122 |
| Msa0950730 | MtrunA17_Chr1g0179321 | 64.516 | 62 | 22 | 0 | 20 | 81 | 47 | 108 | 6.17e-25 | 96.7 |
| Msa0950730 | MtrunA17_Chr4g0023771 | 59.420 | 69 | 27 | 1 | 12 | 79 | 4 | 72 | 2.32e-20 | 84.3 |
| Msa0950730 | MtrunA17_Chr1g0179311 | 28.497 | 193 | 115 | 6 | 61 | 243 | 1 | 180 | 2.67e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0950730 | AT4G13980.1 | 53.755 | 253 | 107 | 3 | 1 | 243 | 1 | 253 | 6.50e-87 | 268 |
| Msa0950730 | AT4G17750.1 | 47.685 | 216 | 92 | 4 | 22 | 216 | 52 | 267 | 4.35e-59 | 196 |
| Msa0950730 | AT5G16820.1 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 3.08e-58 | 194 |
| Msa0950730 | AT5G16820.2 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 3.08e-58 | 194 |
| Msa0950730 | AT3G02990.1 | 42.918 | 233 | 120 | 4 | 8 | 228 | 9 | 240 | 3.48e-58 | 194 |
| Msa0950730 | AT1G32330.1 | 45.532 | 235 | 109 | 5 | 1 | 216 | 16 | 250 | 1.11e-57 | 192 |
| Msa0950730 | AT1G32330.2 | 45.532 | 235 | 109 | 5 | 1 | 216 | 16 | 250 | 1.33e-57 | 192 |
| Msa0950730 | AT5G45710.3 | 38.629 | 321 | 147 | 10 | 14 | 299 | 5 | 310 | 1.39e-54 | 181 |
| Msa0950730 | AT5G45710.1 | 38.629 | 321 | 147 | 10 | 14 | 299 | 5 | 310 | 1.39e-54 | 181 |
| Msa0950730 | AT4G18880.1 | 48.131 | 214 | 95 | 4 | 16 | 220 | 9 | 215 | 6.01e-52 | 176 |
| Msa0950730 | AT2G26150.1 | 41.892 | 222 | 121 | 4 | 19 | 232 | 41 | 262 | 3.27e-50 | 169 |
| Msa0950730 | AT2G26150.4 | 41.892 | 222 | 121 | 4 | 19 | 232 | 41 | 262 | 3.27e-50 | 169 |
| Msa0950730 | AT3G22830.1 | 39.815 | 216 | 117 | 3 | 19 | 221 | 58 | 273 | 3.40e-47 | 163 |
| Msa0950730 | AT3G51910.1 | 41.232 | 211 | 107 | 5 | 22 | 226 | 29 | 228 | 6.45e-47 | 159 |
| Msa0950730 | AT5G03720.2 | 42.079 | 202 | 109 | 3 | 20 | 213 | 53 | 254 | 8.06e-46 | 160 |
| Msa0950730 | AT5G03720.1 | 42.079 | 202 | 109 | 3 | 20 | 213 | 53 | 254 | 8.06e-46 | 160 |
| Msa0950730 | AT1G46264.1 | 61.607 | 112 | 33 | 1 | 21 | 122 | 33 | 144 | 2.23e-44 | 154 |
| Msa0950730 | AT3G24520.1 | 45.665 | 173 | 74 | 3 | 20 | 191 | 15 | 168 | 2.47e-44 | 154 |
| Msa0950730 | AT1G67970.1 | 45.312 | 192 | 92 | 5 | 20 | 201 | 17 | 205 | 5.13e-44 | 154 |
| Msa0950730 | AT5G43840.1 | 41.176 | 187 | 98 | 3 | 21 | 205 | 18 | 194 | 7.59e-42 | 146 |
| Msa0950730 | AT5G54070.1 | 42.623 | 183 | 99 | 2 | 20 | 201 | 69 | 246 | 5.78e-41 | 145 |
| Msa0950730 | AT3G63350.1 | 31.449 | 283 | 160 | 8 | 19 | 297 | 25 | 277 | 2.02e-39 | 140 |
| Msa0950730 | AT4G11660.1 | 62.000 | 100 | 38 | 0 | 14 | 113 | 51 | 150 | 5.95e-39 | 141 |
| Msa0950730 | AT5G62020.1 | 51.261 | 119 | 57 | 1 | 1 | 118 | 1 | 119 | 3.21e-38 | 137 |
| Msa0950730 | AT4G36990.1 | 44.944 | 178 | 63 | 4 | 8 | 153 | 2 | 176 | 4.38e-38 | 136 |
| Msa0950730 | AT2G41690.1 | 53.043 | 115 | 54 | 0 | 22 | 136 | 40 | 154 | 6.96e-38 | 134 |
| Msa0950730 | AT4G18870.1 | 47.727 | 88 | 46 | 0 | 22 | 109 | 146 | 233 | 4.62e-23 | 96.7 |
| Msa0950730 | AT4G18870.1 | 46.875 | 96 | 50 | 1 | 14 | 109 | 5 | 99 | 8.41e-23 | 95.9 |
| Msa0950730 | AT1G77570.1 | 43.478 | 92 | 48 | 3 | 19 | 106 | 22 | 113 | 4.33e-17 | 77.0 |
| Msa0950730 | AT2G26150.3 | 31.527 | 203 | 124 | 6 | 40 | 232 | 10 | 207 | 1.12e-15 | 76.3 |
| Msa0950730 | AT2G26150.2 | 31.527 | 203 | 124 | 6 | 40 | 232 | 10 | 207 | 1.12e-15 | 76.3 |
| Msa0950730 | AT4G19630.1 | 35.052 | 97 | 60 | 1 | 19 | 112 | 8 | 104 | 2.21e-13 | 66.6 |
| Msa0950730 | AT5G45710.4 | 29.694 | 229 | 111 | 10 | 106 | 299 | 1 | 214 | 1.65e-12 | 66.6 |
| Msa0950730 | AT5G45710.2 | 29.694 | 229 | 111 | 10 | 106 | 299 | 1 | 214 | 1.65e-12 | 66.6 |
Find 71 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCAATGCTGCCCTTTC+TGG | -0.010683 | 6_3:-39537925 | None:intergenic |
| ATAATTATAGCTTAGGAGTT+TGG | 0.257010 | 6_3:-39537989 | None:intergenic |
| TTCTGAGAGAAAACATTTCT+AGG | 0.282134 | 6_3:-39538243 | None:intergenic |
| CAAAATCGAATCCATGGATT+TGG | 0.330894 | 6_3:+39538143 | Msa0950730:CDS |
| CCACAGATGAGATCATTTCT+TGG | 0.343190 | 6_3:+39536289 | Msa0950730:CDS |
| ACGGAGTGAATGATGTGTTT+TGG | 0.356521 | 6_3:+39538364 | Msa0950730:CDS |
| CTTCTTTGAGAAGGCTCTAC+AGG | 0.360916 | 6_3:+39538092 | Msa0950730:CDS |
| ATAACAAAAGCTTCATCGTT+TGG | 0.362747 | 6_3:+39536319 | Msa0950730:CDS |
| AGAAGAACGCGAGAGAATTC+AGG | 0.373908 | 6_3:-39536348 | None:intergenic |
| ACGTTACCTGAAGCCTCCTT+TGG | 0.398346 | 6_3:-39538318 | None:intergenic |
| TAAGAAAAGGCGATTGTCTC+AGG | 0.414889 | 6_3:+39538176 | Msa0950730:CDS |
| ACCAAGCTACCTTCGGCAAC+AGG | 0.417714 | 6_3:-39538213 | None:intergenic |
| AGCTTAGGAGTTTGGATTGA+AGG | 0.419735 | 6_3:-39537981 | None:intergenic |
| TTGCTGTGTTTGAAATATGT+TGG | 0.421946 | 6_3:-39536372 | None:intergenic |
| TGCTGTGTTTGAAATATGTT+GGG | 0.444516 | 6_3:-39536371 | None:intergenic |
| TATCAAGATAATTATAGCTT+AGG | 0.451761 | 6_3:-39537996 | None:intergenic |
| TGGAAACTTATAATAAGAAA+AGG | 0.461564 | 6_3:+39538163 | Msa0950730:CDS |
| TCTGCTTCCGTCGGCAGCAG+TGG | 0.466428 | 6_3:-39536214 | None:intergenic |
| CCACAGTCATAGTCATCCTC+CGG | 0.469987 | 6_3:+39537888 | Msa0950730:CDS |
| GCCGAGCAGCTGCTTCGACT+TGG | 0.471786 | 6_3:-39538341 | None:intergenic |
| GCCTGTTGCCGAAGGTAGCT+TGG | 0.473073 | 6_3:+39538212 | Msa0950730:CDS |
| GAAAGCAGATCCTGATCGTT+GGG | 0.475772 | 6_3:+39537795 | Msa0950730:CDS |
| TTGGCAAACTCCCAACGATC+AGG | 0.478885 | 6_3:-39537805 | None:intergenic |
| GCTTAGGAGTTTGGATTGAA+GGG | 0.480417 | 6_3:-39537980 | None:intergenic |
| ATTATAAGTTTCCAAATCCA+TGG | 0.481800 | 6_3:-39538154 | None:intergenic |
| GCTGATCCAAAGGAGGCTTC+AGG | 0.482903 | 6_3:+39538312 | Msa0950730:CDS |
| GAAGCCTCCTTTGGATCAGC+GGG | 0.484852 | 6_3:-39538309 | None:intergenic |
| TTTGCAAAACTTCTTTGAGA+AGG | 0.487416 | 6_3:+39538083 | Msa0950730:CDS |
| CTTTCTGAAGGAGAACTGAC+AGG | 0.491976 | 6_3:+39538267 | Msa0950730:CDS |
| AGATCCAGAAAGGGCAGCAT+TGG | 0.494908 | 6_3:+39537921 | Msa0950730:CDS |
| TGATACAGAAAAGCTTCAGC+TGG | 0.497298 | 6_3:+39538014 | Msa0950730:CDS |
| CGACGGAAGCAGAGAAGGTA+TGG | 0.499479 | 6_3:+39536224 | Msa0950730:CDS |
| ATTGAGCTGACGGATGAAGC+TGG | 0.506271 | 6_3:-39536400 | None:intergenic |
| TTCTCTCAGAATCTTTCTGA+AGG | 0.510971 | 6_3:+39538255 | Msa0950730:CDS |
| TTCCCGCAAAATCGAATCCA+TGG | 0.512391 | 6_3:+39538137 | Msa0950730:CDS |
| TCAGCGGCAATTGGATGGCA+TGG | 0.513464 | 6_3:+39538044 | Msa0950730:CDS |
| TCATATGTCTTCTGAAGAAA+CGG | 0.516273 | 6_3:-39536249 | None:intergenic |
| AACTGACCCCGCTGATCCAA+AGG | 0.526560 | 6_3:+39538302 | Msa0950730:CDS |
| GAGAGAAAACATTTCTAGGA+AGG | 0.527585 | 6_3:-39538239 | None:intergenic |
| AACAGCATGGACTTTCAGTA+AGG | 0.541453 | 6_3:-39538395 | None:intergenic |
| GGAAAGCAGATCCTGATCGT+TGG | 0.545857 | 6_3:+39537794 | Msa0950730:CDS |
| GTCGAAGCAGCTGCTCGGCA+CGG | 0.548207 | 6_3:+39538345 | Msa0950730:CDS |
| TCCAAGTCGAAGCAGCTGCT+CGG | 0.549998 | 6_3:+39538340 | Msa0950730:CDS |
| CCGGAGGATGACTATGACTG+TGG | 0.551542 | 6_3:-39537888 | None:intergenic |
| AAGGTCGACCAAGCTACCTT+CGG | 0.554405 | 6_3:-39538220 | None:intergenic |
| CACAGTCATAGTCATCCTCC+GGG | 0.559092 | 6_3:+39537889 | Msa0950730:CDS |
| TTCTGCTGTAGATCCAGAAA+GGG | 0.565003 | 6_3:+39537912 | Msa0950730:CDS |
| AGAAATGATCTCATCTGTGG+TGG | 0.567159 | 6_3:-39536286 | None:intergenic |
| GTTCTGCTGTAGATCCAGAA+AGG | 0.569845 | 6_3:+39537911 | Msa0950730:CDS |
| GACTGTGGATAGGTTTCTTG+CGG | 0.574041 | 6_3:-39537873 | None:intergenic |
| GCTGCCGACGGAAGCAGAGA+AGG | 0.581055 | 6_3:+39536219 | Msa0950730:CDS |
| TGAAGCCTCCTTTGGATCAG+CGG | 0.591974 | 6_3:-39538310 | None:intergenic |
| CACATGCAGCCTGTTGCCGA+AGG | 0.596050 | 6_3:+39538204 | Msa0950730:CDS |
| TTACATAGGTATTGAGCTGA+CGG | 0.598207 | 6_3:-39536410 | None:intergenic |
| AATTGGATGGCATGGAGAAG+AGG | 0.602743 | 6_3:+39538052 | Msa0950730:CDS |
| TCATCAGCCACTGCTGCCGA+CGG | 0.606067 | 6_3:+39536207 | Msa0950730:CDS |
| TCTGGATCTACAGCAGAACC+CGG | 0.614712 | 6_3:-39537907 | None:intergenic |
| GGATGACTATGACTGTGGAT+AGG | 0.617132 | 6_3:-39537883 | None:intergenic |
| TCTTCATTGTCTGAACAGCA+TGG | 0.622573 | 6_3:-39538408 | None:intergenic |
| CATACCTTCTCTGCTTCCGT+CGG | 0.623107 | 6_3:-39536223 | None:intergenic |
| GAAATGATCTCATCTGTGGT+GGG | 0.624254 | 6_3:-39536285 | None:intergenic |
| AGAACGCGAGAGAATTCAGG+AGG | 0.628084 | 6_3:-39536345 | None:intergenic |
| ATGCTGTTCAGACAATGAAG+AGG | 0.637659 | 6_3:+39538410 | Msa0950730:CDS |
| TTTCTGAAGGAGAACTGACA+GGG | 0.656485 | 6_3:+39538268 | Msa0950730:CDS |
| CCAAGAAATGATCTCATCTG+TGG | 0.658293 | 6_3:-39536289 | None:intergenic |
| TGACCCCGCTGATCCAAAGG+AGG | 0.662370 | 6_3:+39538305 | Msa0950730:CDS |
| GAACGCGAGAGAATTCAGGA+GGG | 0.662504 | 6_3:-39536344 | None:intergenic |
| TCTTCAGAAGACATATGACA+TGG | 0.665030 | 6_3:+39536254 | Msa0950730:CDS |
| GCAGTGGCTGATGATGATTG+TGG | 0.706595 | 6_3:-39536198 | None:intergenic |
| AAGCCTCCTTTGGATCAGCG+GGG | 0.731334 | 6_3:-39538308 | None:intergenic |
| GGATCTACAGCAGAACCCGG+AGG | 0.744225 | 6_3:-39537904 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCTTGTAAAAATTTAA+TGG | + | chr6_3:39537636-39537655 | Msa0950730:intron | 10.0% |
| !!! | ATCTTTTATAAATTTTTCAT+TGG | - | chr6_3:39537827-39537846 | None:intergenic | 10.0% |
| !! | ATATTCTTGTAAAAATTTAA+TGG | + | chr6_3:39537636-39537655 | Msa0950730:intron | 10.0% |
| !!! | ATCTTTTATAAATTTTTCAT+TGG | - | chr6_3:39537827-39537846 | None:intergenic | 10.0% |
| !! | TTATCATATTTATATAGTTC+AGG | - | chr6_3:39537099-39537118 | None:intergenic | 15.0% |
| !! | TTATCATATTTATATAGTTC+AGG | - | chr6_3:39537099-39537118 | None:intergenic | 15.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | + | chr6_3:39536529-39536548 | Msa0950730:intron | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | + | chr6_3:39536635-39536654 | Msa0950730:intron | 20.0% |
| !! | ATTATTTCATTGAGTTTAGT+TGG | + | chr6_3:39536675-39536694 | Msa0950730:intron | 20.0% |
| !! | ATACTAAATTATGTCATTGT+CGG | - | chr6_3:39536829-39536848 | None:intergenic | 20.0% |
| !! | TTTAGTATAATCATATGTGT+CGG | + | chr6_3:39536841-39536860 | Msa0950730:intron | 20.0% |
| !!! | ACTATTTATCATGTTTCTAT+AGG | + | chr6_3:39537240-39537259 | Msa0950730:intron | 20.0% |
| !!! | CTATTTATCATGTTTCTATA+GGG | + | chr6_3:39537241-39537260 | Msa0950730:intron | 20.0% |
| !! | AGGTAATATTTGTATAACTA+TGG | - | chr6_3:39537328-39537347 | None:intergenic | 20.0% |
| !! | ATGTGAAAGATTTGAAAATA+AGG | - | chr6_3:39537348-39537367 | None:intergenic | 20.0% |
| !!! | TTATTTTCAAATCTTTCACA+TGG | + | chr6_3:39537347-39537366 | Msa0950730:intron | 20.0% |
| !! | ATGGGAAAATTTAACATTTA+GGG | - | chr6_3:39537395-39537414 | None:intergenic | 20.0% |
| !! | AATGGGAAAATTTAACATTT+AGG | - | chr6_3:39537396-39537415 | None:intergenic | 20.0% |
| !! | GGATTAAACAATAAAAATCA+GGG | - | chr6_3:39537434-39537453 | None:intergenic | 20.0% |
| !! | AGGATTAAACAATAAAAATC+AGG | - | chr6_3:39537435-39537454 | None:intergenic | 20.0% |
| !!! | AAGTATGTTTTAGTTTGTTA+TGG | + | chr6_3:39537739-39537758 | Msa0950730:intron | 20.0% |
| !!! | ATTTATGTGTGCTTTTTATT+AGG | + | chr6_3:39537765-39537784 | Msa0950730:intron | 20.0% |
| !!! | TTTATGTGTGCTTTTTATTA+GGG | + | chr6_3:39537766-39537785 | Msa0950730:intron | 20.0% |
| !! | TATCAAGATAATTATAGCTT+AGG | - | chr6_3:39537999-39538018 | None:intergenic | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | + | chr6_3:39538163-39538182 | Msa0950730:CDS | 20.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | + | chr6_3:39536529-39536548 | Msa0950730:intron | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | + | chr6_3:39536635-39536654 | Msa0950730:intron | 20.0% |
| !! | ATTATTTCATTGAGTTTAGT+TGG | + | chr6_3:39536675-39536694 | Msa0950730:intron | 20.0% |
| !! | ATACTAAATTATGTCATTGT+CGG | - | chr6_3:39536829-39536848 | None:intergenic | 20.0% |
| !! | TTTAGTATAATCATATGTGT+CGG | + | chr6_3:39536841-39536860 | Msa0950730:intron | 20.0% |
| !!! | ACTATTTATCATGTTTCTAT+AGG | + | chr6_3:39537240-39537259 | Msa0950730:intron | 20.0% |
| !!! | CTATTTATCATGTTTCTATA+GGG | + | chr6_3:39537241-39537260 | Msa0950730:intron | 20.0% |
| !! | AGGTAATATTTGTATAACTA+TGG | - | chr6_3:39537328-39537347 | None:intergenic | 20.0% |
| !! | ATGTGAAAGATTTGAAAATA+AGG | - | chr6_3:39537348-39537367 | None:intergenic | 20.0% |
| !!! | TTATTTTCAAATCTTTCACA+TGG | + | chr6_3:39537347-39537366 | Msa0950730:intron | 20.0% |
| !! | ATGGGAAAATTTAACATTTA+GGG | - | chr6_3:39537395-39537414 | None:intergenic | 20.0% |
| !! | AATGGGAAAATTTAACATTT+AGG | - | chr6_3:39537396-39537415 | None:intergenic | 20.0% |
| !! | GGATTAAACAATAAAAATCA+GGG | - | chr6_3:39537434-39537453 | None:intergenic | 20.0% |
| !! | AGGATTAAACAATAAAAATC+AGG | - | chr6_3:39537435-39537454 | None:intergenic | 20.0% |
| !!! | AAGTATGTTTTAGTTTGTTA+TGG | + | chr6_3:39537739-39537758 | Msa0950730:intron | 20.0% |
| !!! | ATTTATGTGTGCTTTTTATT+AGG | + | chr6_3:39537765-39537784 | Msa0950730:intron | 20.0% |
| !!! | TTTATGTGTGCTTTTTATTA+GGG | + | chr6_3:39537766-39537785 | Msa0950730:intron | 20.0% |
| !! | TATCAAGATAATTATAGCTT+AGG | - | chr6_3:39537999-39538018 | None:intergenic | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | + | chr6_3:39538163-39538182 | Msa0950730:CDS | 20.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | + | chr6_3:39536652-39536671 | Msa0950730:intron | 25.0% |
| !!! | TGAGATATTATAGTCTTGTA+TGG | + | chr6_3:39536738-39536757 | Msa0950730:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | - | chr6_3:39537055-39537074 | None:intergenic | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | + | chr6_3:39537547-39537566 | Msa0950730:intron | 25.0% |
| ! | ATTACACACATAAAAACTTC+AGG | - | chr6_3:39537611-39537630 | None:intergenic | 25.0% |
| ! | GCATTCTTGTAAAGATTTAA+TGG | + | chr6_3:39537658-39537677 | Msa0950730:intron | 25.0% |
| ! | AAATAAGTTTGCAGTTCTTA+TGG | + | chr6_3:39537691-39537710 | Msa0950730:intron | 25.0% |
| ! | ATAATTATAGCTTAGGAGTT+TGG | - | chr6_3:39537992-39538011 | None:intergenic | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | - | chr6_3:39538157-39538176 | None:intergenic | 25.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | + | chr6_3:39536652-39536671 | Msa0950730:intron | 25.0% |
| !!! | TGAGATATTATAGTCTTGTA+TGG | + | chr6_3:39536738-39536757 | Msa0950730:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | - | chr6_3:39537055-39537074 | None:intergenic | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | + | chr6_3:39537547-39537566 | Msa0950730:intron | 25.0% |
| ! | ATTACACACATAAAAACTTC+AGG | - | chr6_3:39537611-39537630 | None:intergenic | 25.0% |
| ! | GCATTCTTGTAAAGATTTAA+TGG | + | chr6_3:39537658-39537677 | Msa0950730:intron | 25.0% |
| ! | AAATAAGTTTGCAGTTCTTA+TGG | + | chr6_3:39537691-39537710 | Msa0950730:intron | 25.0% |
| ! | ATAATTATAGCTTAGGAGTT+TGG | - | chr6_3:39537992-39538011 | None:intergenic | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | - | chr6_3:39538157-39538176 | None:intergenic | 25.0% |
| ! | TCATATGTCTTCTGAAGAAA+CGG | - | chr6_3:39536252-39536271 | None:intergenic | 30.0% |
| ATAACAAAAGCTTCATCGTT+TGG | + | chr6_3:39536319-39536338 | Msa0950730:CDS | 30.0% | |
| ! | TGCTGTGTTTGAAATATGTT+GGG | - | chr6_3:39536374-39536393 | None:intergenic | 30.0% |
| ! | TTGCTGTGTTTGAAATATGT+TGG | - | chr6_3:39536375-39536394 | None:intergenic | 30.0% |
| ! | TAGCATGAATTGACTTACAT+AGG | - | chr6_3:39536427-39536446 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | + | chr6_3:39536563-39536582 | Msa0950730:intron | 30.0% | |
| AAATTAAGACATACGAAGCA+AGG | - | chr6_3:39536909-39536928 | None:intergenic | 30.0% | |
| ! | GCTTCGTATGTCTTAATTTT+CGG | + | chr6_3:39536910-39536929 | Msa0950730:intron | 30.0% |
| !! | TATGTCTTAATTTTCGGTGT+GGG | + | chr6_3:39536916-39536935 | Msa0950730:intron | 30.0% |
| ! | AAGAATATTTCTACAGCATC+TGG | + | chr6_3:39536992-39537011 | Msa0950730:intron | 30.0% |
| TCTGAATATCACACTATTTC+CGG | + | chr6_3:39537066-39537085 | Msa0950730:intron | 30.0% | |
| ATATAGTTCAGGAACTAAAC+CGG | - | chr6_3:39537088-39537107 | None:intergenic | 30.0% | |
| ! | TTATCATGTTTCTATAGGGT+AGG | + | chr6_3:39537245-39537264 | Msa0950730:intron | 30.0% |
| ! | TATCATGTTTCTATAGGGTA+GGG | + | chr6_3:39537246-39537265 | Msa0950730:intron | 30.0% |
| ! | TGACTAACATGGGAAATTTT+GGG | - | chr6_3:39537294-39537313 | None:intergenic | 30.0% |
| ! | ATGACTAACATGGGAAATTT+TGG | - | chr6_3:39537295-39537314 | None:intergenic | 30.0% |
| AACAATAAAAATCAGGGTGT+TGG | - | chr6_3:39537428-39537447 | None:intergenic | 30.0% | |
| ATGGCAATGAGTAAAAACTA+AGG | + | chr6_3:39537566-39537585 | Msa0950730:intron | 30.0% | |
| !! | GTGCTTTTTATTAGGGATTT+CGG | + | chr6_3:39537773-39537792 | Msa0950730:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | + | chr6_3:39537843-39537862 | Msa0950730:CDS | 30.0% | |
| ! | TTTGCAAAACTTCTTTGAGA+AGG | + | chr6_3:39538083-39538102 | Msa0950730:CDS | 30.0% |
| ! | TTCTGAGAGAAAACATTTCT+AGG | - | chr6_3:39538246-39538265 | None:intergenic | 30.0% |
| ! | TCATATGTCTTCTGAAGAAA+CGG | - | chr6_3:39536252-39536271 | None:intergenic | 30.0% |
| ATAACAAAAGCTTCATCGTT+TGG | + | chr6_3:39536319-39536338 | Msa0950730:CDS | 30.0% | |
| ! | TGCTGTGTTTGAAATATGTT+GGG | - | chr6_3:39536374-39536393 | None:intergenic | 30.0% |
| ! | TTGCTGTGTTTGAAATATGT+TGG | - | chr6_3:39536375-39536394 | None:intergenic | 30.0% |
| ! | TAGCATGAATTGACTTACAT+AGG | - | chr6_3:39536427-39536446 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | + | chr6_3:39536563-39536582 | Msa0950730:intron | 30.0% | |
| AAATTAAGACATACGAAGCA+AGG | - | chr6_3:39536909-39536928 | None:intergenic | 30.0% | |
| ! | GCTTCGTATGTCTTAATTTT+CGG | + | chr6_3:39536910-39536929 | Msa0950730:intron | 30.0% |
| !! | TATGTCTTAATTTTCGGTGT+GGG | + | chr6_3:39536916-39536935 | Msa0950730:intron | 30.0% |
| ! | AAGAATATTTCTACAGCATC+TGG | + | chr6_3:39536992-39537011 | Msa0950730:intron | 30.0% |
| TCTGAATATCACACTATTTC+CGG | + | chr6_3:39537066-39537085 | Msa0950730:intron | 30.0% | |
| ATATAGTTCAGGAACTAAAC+CGG | - | chr6_3:39537088-39537107 | None:intergenic | 30.0% | |
| ! | TTATCATGTTTCTATAGGGT+AGG | + | chr6_3:39537245-39537264 | Msa0950730:intron | 30.0% |
| ! | TATCATGTTTCTATAGGGTA+GGG | + | chr6_3:39537246-39537265 | Msa0950730:intron | 30.0% |
| ! | TGACTAACATGGGAAATTTT+GGG | - | chr6_3:39537294-39537313 | None:intergenic | 30.0% |
| ! | ATGACTAACATGGGAAATTT+TGG | - | chr6_3:39537295-39537314 | None:intergenic | 30.0% |
| AACAATAAAAATCAGGGTGT+TGG | - | chr6_3:39537428-39537447 | None:intergenic | 30.0% | |
| ATGGCAATGAGTAAAAACTA+AGG | + | chr6_3:39537566-39537585 | Msa0950730:intron | 30.0% | |
| !! | GTGCTTTTTATTAGGGATTT+CGG | + | chr6_3:39537773-39537792 | Msa0950730:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | + | chr6_3:39537843-39537862 | Msa0950730:CDS | 30.0% | |
| ! | TTTGCAAAACTTCTTTGAGA+AGG | + | chr6_3:39538083-39538102 | Msa0950730:CDS | 30.0% |
| ! | TTCTGAGAGAAAACATTTCT+AGG | - | chr6_3:39538246-39538265 | None:intergenic | 30.0% |
| TCTTCAGAAGACATATGACA+TGG | + | chr6_3:39536254-39536273 | Msa0950730:CDS | 35.0% | |
| !! | TTACATAGGTATTGAGCTGA+CGG | - | chr6_3:39536413-39536432 | None:intergenic | 35.0% |
| GACATGAGAATGTTGAAAGA+TGG | + | chr6_3:39536714-39536733 | Msa0950730:intron | 35.0% | |
| ! | ATAATCATATGTGTCGGTGT+CGG | + | chr6_3:39536847-39536866 | Msa0950730:intron | 35.0% |
| ! | GTATGTCTTAATTTTCGGTG+TGG | + | chr6_3:39536915-39536934 | Msa0950730:intron | 35.0% |
| TGACGCATTTCATATACTTC+AGG | - | chr6_3:39537128-39537147 | None:intergenic | 35.0% | |
| ! | GTAGGGACTAAATTTGAGAT+AGG | + | chr6_3:39537263-39537282 | Msa0950730:intron | 35.0% |
| AGACACATCATGACTAACAT+GGG | - | chr6_3:39537304-39537323 | None:intergenic | 35.0% | |
| AAAACTTCAGGAAGCAAATC+TGG | - | chr6_3:39537599-39537618 | None:intergenic | 35.0% | |
| ! | AATCCATGGATTCGATTTTG+CGG | - | chr6_3:39538143-39538162 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | + | chr6_3:39538143-39538162 | Msa0950730:CDS | 35.0% | |
| ! | GAGAGAAAACATTTCTAGGA+AGG | - | chr6_3:39538242-39538261 | None:intergenic | 35.0% |
| TTCTCTCAGAATCTTTCTGA+AGG | + | chr6_3:39538255-39538274 | Msa0950730:CDS | 35.0% | |
| TCTTCAGAAGACATATGACA+TGG | + | chr6_3:39536254-39536273 | Msa0950730:CDS | 35.0% | |
| !! | TTACATAGGTATTGAGCTGA+CGG | - | chr6_3:39536413-39536432 | None:intergenic | 35.0% |
| GACATGAGAATGTTGAAAGA+TGG | + | chr6_3:39536714-39536733 | Msa0950730:intron | 35.0% | |
| ! | ATAATCATATGTGTCGGTGT+CGG | + | chr6_3:39536847-39536866 | Msa0950730:intron | 35.0% |
| ! | GTATGTCTTAATTTTCGGTG+TGG | + | chr6_3:39536915-39536934 | Msa0950730:intron | 35.0% |
| TGACGCATTTCATATACTTC+AGG | - | chr6_3:39537128-39537147 | None:intergenic | 35.0% | |
| ! | GTAGGGACTAAATTTGAGAT+AGG | + | chr6_3:39537263-39537282 | Msa0950730:intron | 35.0% |
| AGACACATCATGACTAACAT+GGG | - | chr6_3:39537304-39537323 | None:intergenic | 35.0% | |
| AAAACTTCAGGAAGCAAATC+TGG | - | chr6_3:39537599-39537618 | None:intergenic | 35.0% | |
| ! | AATCCATGGATTCGATTTTG+CGG | - | chr6_3:39538143-39538162 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | + | chr6_3:39538143-39538162 | Msa0950730:CDS | 35.0% | |
| ! | GAGAGAAAACATTTCTAGGA+AGG | - | chr6_3:39538242-39538261 | None:intergenic | 35.0% |
| TTCTCTCAGAATCTTTCTGA+AGG | + | chr6_3:39538255-39538274 | Msa0950730:CDS | 35.0% | |
| GAAATGATCTCATCTGTGGT+GGG | - | chr6_3:39536288-39536307 | None:intergenic | 40.0% | |
| AGAAATGATCTCATCTGTGG+TGG | - | chr6_3:39536289-39536308 | None:intergenic | 40.0% | |
| CCAAGAAATGATCTCATCTG+TGG | - | chr6_3:39536292-39536311 | None:intergenic | 40.0% | |
| CCACAGATGAGATCATTTCT+TGG | + | chr6_3:39536289-39536308 | Msa0950730:CDS | 40.0% | |
| ! | TGTGAATTGGTGGGTGATTT+AGG | + | chr6_3:39536941-39536960 | Msa0950730:intron | 40.0% |
| TTTCTACAGCATCTGGATCT+TGG | + | chr6_3:39536999-39537018 | Msa0950730:intron | 40.0% | |
| CAGACACATCATGACTAACA+TGG | - | chr6_3:39537305-39537324 | None:intergenic | 40.0% | |
| TCTTTCACATGGCAAACCTA+TGG | + | chr6_3:39537358-39537377 | Msa0950730:intron | 40.0% | |
| CTTTCACATGGCAAACCTAT+GGG | + | chr6_3:39537359-39537378 | Msa0950730:intron | 40.0% | |
| !! | GGTGTTGGTATGCACTTAAT+GGG | - | chr6_3:39537413-39537432 | None:intergenic | 40.0% |
| CTACGATGTAGAAGAGAAGT+AGG | - | chr6_3:39537455-39537474 | None:intergenic | 40.0% | |
| TTCTGCTGTAGATCCAGAAA+GGG | + | chr6_3:39537912-39537931 | Msa0950730:CDS | 40.0% | |
| GCTTAGGAGTTTGGATTGAA+GGG | - | chr6_3:39537983-39538002 | None:intergenic | 40.0% | |
| AGCTTAGGAGTTTGGATTGA+AGG | - | chr6_3:39537984-39538003 | None:intergenic | 40.0% | |
| TGATACAGAAAAGCTTCAGC+TGG | + | chr6_3:39538014-39538033 | Msa0950730:CDS | 40.0% | |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | + | chr6_3:39538028-39538047 | Msa0950730:CDS | 40.0% |
| ! | ATCCATGGATTCGATTTTGC+GGG | - | chr6_3:39538142-39538161 | None:intergenic | 40.0% |
| TAAGAAAAGGCGATTGTCTC+AGG | + | chr6_3:39538176-39538195 | Msa0950730:CDS | 40.0% | |
| ! | TTTCTGAAGGAGAACTGACA+GGG | + | chr6_3:39538268-39538287 | Msa0950730:CDS | 40.0% |
| ! | ACGGAGTGAATGATGTGTTT+TGG | + | chr6_3:39538364-39538383 | Msa0950730:CDS | 40.0% |
| ! | CGGAGTGAATGATGTGTTTT+GGG | + | chr6_3:39538365-39538384 | Msa0950730:CDS | 40.0% |
| AACAGCATGGACTTTCAGTA+AGG | - | chr6_3:39538398-39538417 | None:intergenic | 40.0% | |
| TCTTCATTGTCTGAACAGCA+TGG | - | chr6_3:39538411-39538430 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | + | chr6_3:39538410-39538429 | Msa0950730:CDS | 40.0% | |
| GAAATGATCTCATCTGTGGT+GGG | - | chr6_3:39536288-39536307 | None:intergenic | 40.0% | |
| AGAAATGATCTCATCTGTGG+TGG | - | chr6_3:39536289-39536308 | None:intergenic | 40.0% | |
| CCAAGAAATGATCTCATCTG+TGG | - | chr6_3:39536292-39536311 | None:intergenic | 40.0% | |
| CCACAGATGAGATCATTTCT+TGG | + | chr6_3:39536289-39536308 | Msa0950730:CDS | 40.0% | |
| ! | TGTGAATTGGTGGGTGATTT+AGG | + | chr6_3:39536941-39536960 | Msa0950730:intron | 40.0% |
| TTTCTACAGCATCTGGATCT+TGG | + | chr6_3:39536999-39537018 | Msa0950730:intron | 40.0% | |
| CAGACACATCATGACTAACA+TGG | - | chr6_3:39537305-39537324 | None:intergenic | 40.0% | |
| TCTTTCACATGGCAAACCTA+TGG | + | chr6_3:39537358-39537377 | Msa0950730:intron | 40.0% | |
| CTTTCACATGGCAAACCTAT+GGG | + | chr6_3:39537359-39537378 | Msa0950730:intron | 40.0% | |
| !! | GGTGTTGGTATGCACTTAAT+GGG | - | chr6_3:39537413-39537432 | None:intergenic | 40.0% |
| CTACGATGTAGAAGAGAAGT+AGG | - | chr6_3:39537455-39537474 | None:intergenic | 40.0% | |
| TTCTGCTGTAGATCCAGAAA+GGG | + | chr6_3:39537912-39537931 | Msa0950730:CDS | 40.0% | |
| GCTTAGGAGTTTGGATTGAA+GGG | - | chr6_3:39537983-39538002 | None:intergenic | 40.0% | |
| AGCTTAGGAGTTTGGATTGA+AGG | - | chr6_3:39537984-39538003 | None:intergenic | 40.0% | |
| TGATACAGAAAAGCTTCAGC+TGG | + | chr6_3:39538014-39538033 | Msa0950730:CDS | 40.0% | |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | + | chr6_3:39538028-39538047 | Msa0950730:CDS | 40.0% |
| ! | ATCCATGGATTCGATTTTGC+GGG | - | chr6_3:39538142-39538161 | None:intergenic | 40.0% |
| TAAGAAAAGGCGATTGTCTC+AGG | + | chr6_3:39538176-39538195 | Msa0950730:CDS | 40.0% | |
| ! | TTTCTGAAGGAGAACTGACA+GGG | + | chr6_3:39538268-39538287 | Msa0950730:CDS | 40.0% |
| ! | ACGGAGTGAATGATGTGTTT+TGG | + | chr6_3:39538364-39538383 | Msa0950730:CDS | 40.0% |
| ! | CGGAGTGAATGATGTGTTTT+GGG | + | chr6_3:39538365-39538384 | Msa0950730:CDS | 40.0% |
| AACAGCATGGACTTTCAGTA+AGG | - | chr6_3:39538398-39538417 | None:intergenic | 40.0% | |
| TCTTCATTGTCTGAACAGCA+TGG | - | chr6_3:39538411-39538430 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | + | chr6_3:39538410-39538429 | Msa0950730:CDS | 40.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | - | chr6_3:39536351-39536370 | None:intergenic | 45.0% | |
| ! | TGGCAAACCTATGGGTGTTT+TGG | + | chr6_3:39537367-39537386 | Msa0950730:intron | 45.0% |
| TAGGGTTCCAAAACACCCAT+AGG | - | chr6_3:39537377-39537396 | None:intergenic | 45.0% | |
| !! | GGGTGTTGGTATGCACTTAA+TGG | - | chr6_3:39537414-39537433 | None:intergenic | 45.0% |
| CGTAGACATCTCAAGCATCT+AGG | + | chr6_3:39537470-39537489 | Msa0950730:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+TGG | - | chr6_3:39537596-39537615 | None:intergenic | 45.0% | |
| GAAAGCAGATCCTGATCGTT+GGG | + | chr6_3:39537795-39537814 | Msa0950730:CDS | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | - | chr6_3:39537876-39537895 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | - | chr6_3:39537886-39537905 | None:intergenic | 45.0% | |
| GTTCTGCTGTAGATCCAGAA+AGG | + | chr6_3:39537911-39537930 | Msa0950730:CDS | 45.0% | |
| ! | GGAAGATTTTCAGCGGCAAT+TGG | + | chr6_3:39538035-39538054 | Msa0950730:CDS | 45.0% |
| ! | GATTTTCAGCGGCAATTGGA+TGG | + | chr6_3:39538039-39538058 | Msa0950730:CDS | 45.0% |
| AATTGGATGGCATGGAGAAG+AGG | + | chr6_3:39538052-39538071 | Msa0950730:CDS | 45.0% | |
| ! | CTTCTTTGAGAAGGCTCTAC+AGG | + | chr6_3:39538092-39538111 | Msa0950730:CDS | 45.0% |
| TTCCCGCAAAATCGAATCCA+TGG | + | chr6_3:39538137-39538156 | Msa0950730:CDS | 45.0% | |
| ! | CTTTCTGAAGGAGAACTGAC+AGG | + | chr6_3:39538267-39538286 | Msa0950730:CDS | 45.0% |
| AGAAGAACGCGAGAGAATTC+AGG | - | chr6_3:39536351-39536370 | None:intergenic | 45.0% | |
| ! | TGGCAAACCTATGGGTGTTT+TGG | + | chr6_3:39537367-39537386 | Msa0950730:intron | 45.0% |
| TAGGGTTCCAAAACACCCAT+AGG | - | chr6_3:39537377-39537396 | None:intergenic | 45.0% | |
| !! | GGGTGTTGGTATGCACTTAA+TGG | - | chr6_3:39537414-39537433 | None:intergenic | 45.0% |
| CGTAGACATCTCAAGCATCT+AGG | + | chr6_3:39537470-39537489 | Msa0950730:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+TGG | - | chr6_3:39537596-39537615 | None:intergenic | 45.0% | |
| GAAAGCAGATCCTGATCGTT+GGG | + | chr6_3:39537795-39537814 | Msa0950730:CDS | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | - | chr6_3:39537876-39537895 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | - | chr6_3:39537886-39537905 | None:intergenic | 45.0% | |
| GTTCTGCTGTAGATCCAGAA+AGG | + | chr6_3:39537911-39537930 | Msa0950730:CDS | 45.0% | |
| ! | GGAAGATTTTCAGCGGCAAT+TGG | + | chr6_3:39538035-39538054 | Msa0950730:CDS | 45.0% |
| ! | GATTTTCAGCGGCAATTGGA+TGG | + | chr6_3:39538039-39538058 | Msa0950730:CDS | 45.0% |
| AATTGGATGGCATGGAGAAG+AGG | + | chr6_3:39538052-39538071 | Msa0950730:CDS | 45.0% | |
| ! | CTTCTTTGAGAAGGCTCTAC+AGG | + | chr6_3:39538092-39538111 | Msa0950730:CDS | 45.0% |
| TTCCCGCAAAATCGAATCCA+TGG | + | chr6_3:39538137-39538156 | Msa0950730:CDS | 45.0% | |
| ! | CTTTCTGAAGGAGAACTGAC+AGG | + | chr6_3:39538267-39538286 | Msa0950730:CDS | 45.0% |
| ! | GCAGTGGCTGATGATGATTG+TGG | - | chr6_3:39536201-39536220 | None:intergenic | 50.0% |
| CATACCTTCTCTGCTTCCGT+CGG | - | chr6_3:39536226-39536245 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | - | chr6_3:39536347-39536366 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | - | chr6_3:39536348-39536367 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | - | chr6_3:39536403-39536422 | None:intergenic | 50.0% |
| GATTAGGTGCGTCCTAGTGT+CGG | - | chr6_3:39536876-39536895 | None:intergenic | 50.0% | |
| TACGAAGCAAGGACACTCCT+CGG | - | chr6_3:39536898-39536917 | None:intergenic | 50.0% | |
| ! | TTCGGTGTGGGTGTGTGAAT+TGG | + | chr6_3:39536928-39536947 | Msa0950730:intron | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | + | chr6_3:39536932-39536951 | Msa0950730:intron | 50.0% | |
| CAGGAAGCAAATCTGGTGGT+GGG | - | chr6_3:39537592-39537611 | None:intergenic | 50.0% | |
| TCAGGAAGCAAATCTGGTGG+TGG | - | chr6_3:39537593-39537612 | None:intergenic | 50.0% | |
| GGAAAGCAGATCCTGATCGT+TGG | + | chr6_3:39537794-39537813 | Msa0950730:CDS | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | - | chr6_3:39537808-39537827 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | + | chr6_3:39537888-39537907 | Msa0950730:CDS | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | + | chr6_3:39537889-39537908 | Msa0950730:CDS | 50.0% | |
| TCTGGATCTACAGCAGAACC+CGG | - | chr6_3:39537910-39537929 | None:intergenic | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | + | chr6_3:39537921-39537940 | Msa0950730:CDS | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | - | chr6_3:39537928-39537947 | None:intergenic | 50.0% | |
| AAGGTCGACCAAGCTACCTT+CGG | - | chr6_3:39538223-39538242 | None:intergenic | 50.0% | |
| TGAAGCCTCCTTTGGATCAG+CGG | - | chr6_3:39538313-39538332 | None:intergenic | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | - | chr6_3:39538321-39538340 | None:intergenic | 50.0% | |
| ! | GCAGTGGCTGATGATGATTG+TGG | - | chr6_3:39536201-39536220 | None:intergenic | 50.0% |
| CATACCTTCTCTGCTTCCGT+CGG | - | chr6_3:39536226-39536245 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | - | chr6_3:39536347-39536366 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | - | chr6_3:39536348-39536367 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | - | chr6_3:39536403-39536422 | None:intergenic | 50.0% |
| GATTAGGTGCGTCCTAGTGT+CGG | - | chr6_3:39536876-39536895 | None:intergenic | 50.0% | |
| TACGAAGCAAGGACACTCCT+CGG | - | chr6_3:39536898-39536917 | None:intergenic | 50.0% | |
| ! | TTCGGTGTGGGTGTGTGAAT+TGG | + | chr6_3:39536928-39536947 | Msa0950730:intron | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | + | chr6_3:39536932-39536951 | Msa0950730:intron | 50.0% | |
| CAGGAAGCAAATCTGGTGGT+GGG | - | chr6_3:39537592-39537611 | None:intergenic | 50.0% | |
| TCAGGAAGCAAATCTGGTGG+TGG | - | chr6_3:39537593-39537612 | None:intergenic | 50.0% | |
| GGAAAGCAGATCCTGATCGT+TGG | + | chr6_3:39537794-39537813 | Msa0950730:CDS | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | - | chr6_3:39537808-39537827 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | + | chr6_3:39537888-39537907 | Msa0950730:CDS | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | + | chr6_3:39537889-39537908 | Msa0950730:CDS | 50.0% | |
| TCTGGATCTACAGCAGAACC+CGG | - | chr6_3:39537910-39537929 | None:intergenic | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | + | chr6_3:39537921-39537940 | Msa0950730:CDS | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | - | chr6_3:39537928-39537947 | None:intergenic | 50.0% | |
| AAGGTCGACCAAGCTACCTT+CGG | - | chr6_3:39538223-39538242 | None:intergenic | 50.0% | |
| TGAAGCCTCCTTTGGATCAG+CGG | - | chr6_3:39538313-39538332 | None:intergenic | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | - | chr6_3:39538321-39538340 | None:intergenic | 50.0% | |
| CGACGGAAGCAGAGAAGGTA+TGG | + | chr6_3:39536224-39536243 | Msa0950730:CDS | 55.0% | |
| ACTAGGACGCACCTAATCCG+AGG | + | chr6_3:39536878-39536897 | Msa0950730:intron | 55.0% | |
| GCAAGGACACTCCTCGGATT+AGG | - | chr6_3:39536892-39536911 | None:intergenic | 55.0% | |
| GGTGTGGGTGTGTGAATTGG+TGG | + | chr6_3:39536931-39536950 | Msa0950730:intron | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | - | chr6_3:39537891-39537910 | None:intergenic | 55.0% | |
| TCAGCGGCAATTGGATGGCA+TGG | + | chr6_3:39538044-39538063 | Msa0950730:CDS | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | - | chr6_3:39538216-39538235 | None:intergenic | 55.0% | |
| AACTGACCCCGCTGATCCAA+AGG | + | chr6_3:39538302-39538321 | Msa0950730:CDS | 55.0% | |
| AAGCCTCCTTTGGATCAGCG+GGG | - | chr6_3:39538311-39538330 | None:intergenic | 55.0% | |
| GAAGCCTCCTTTGGATCAGC+GGG | - | chr6_3:39538312-39538331 | None:intergenic | 55.0% | |
| GCTGATCCAAAGGAGGCTTC+AGG | + | chr6_3:39538312-39538331 | Msa0950730:CDS | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | + | chr6_3:39538340-39538359 | Msa0950730:CDS | 55.0% | |
| CGACGGAAGCAGAGAAGGTA+TGG | + | chr6_3:39536224-39536243 | Msa0950730:CDS | 55.0% | |
| ACTAGGACGCACCTAATCCG+AGG | + | chr6_3:39536878-39536897 | Msa0950730:intron | 55.0% | |
| GCAAGGACACTCCTCGGATT+AGG | - | chr6_3:39536892-39536911 | None:intergenic | 55.0% | |
| GGTGTGGGTGTGTGAATTGG+TGG | + | chr6_3:39536931-39536950 | Msa0950730:intron | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | - | chr6_3:39537891-39537910 | None:intergenic | 55.0% | |
| TCAGCGGCAATTGGATGGCA+TGG | + | chr6_3:39538044-39538063 | Msa0950730:CDS | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | - | chr6_3:39538216-39538235 | None:intergenic | 55.0% | |
| AACTGACCCCGCTGATCCAA+AGG | + | chr6_3:39538302-39538321 | Msa0950730:CDS | 55.0% | |
| AAGCCTCCTTTGGATCAGCG+GGG | - | chr6_3:39538311-39538330 | None:intergenic | 55.0% | |
| GAAGCCTCCTTTGGATCAGC+GGG | - | chr6_3:39538312-39538331 | None:intergenic | 55.0% | |
| GCTGATCCAAAGGAGGCTTC+AGG | + | chr6_3:39538312-39538331 | Msa0950730:CDS | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | + | chr6_3:39538340-39538359 | Msa0950730:CDS | 55.0% | |
| TCATCAGCCACTGCTGCCGA+CGG | + | chr6_3:39536207-39536226 | Msa0950730:CDS | 60.0% | |
| GGATCTACAGCAGAACCCGG+AGG | - | chr6_3:39537907-39537926 | None:intergenic | 60.0% | |
| CACATGCAGCCTGTTGCCGA+AGG | + | chr6_3:39538204-39538223 | Msa0950730:CDS | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | + | chr6_3:39538212-39538231 | Msa0950730:CDS | 60.0% | |
| TGACCCCGCTGATCCAAAGG+AGG | + | chr6_3:39538305-39538324 | Msa0950730:CDS | 60.0% | |
| TCATCAGCCACTGCTGCCGA+CGG | + | chr6_3:39536207-39536226 | Msa0950730:CDS | 60.0% | |
| GGATCTACAGCAGAACCCGG+AGG | - | chr6_3:39537907-39537926 | None:intergenic | 60.0% | |
| CACATGCAGCCTGTTGCCGA+AGG | + | chr6_3:39538204-39538223 | Msa0950730:CDS | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | + | chr6_3:39538212-39538231 | Msa0950730:CDS | 60.0% | |
| TGACCCCGCTGATCCAAAGG+AGG | + | chr6_3:39538305-39538324 | Msa0950730:CDS | 60.0% | |
| TCTGCTTCCGTCGGCAGCAG+TGG | - | chr6_3:39536217-39536236 | None:intergenic | 65.0% | |
| GCTGCCGACGGAAGCAGAGA+AGG | + | chr6_3:39536219-39536238 | Msa0950730:CDS | 65.0% | |
| ! | CGGTGTCGGACACCGACACT+AGG | + | chr6_3:39536861-39536880 | Msa0950730:intron | 65.0% |
| GCCGAGCAGCTGCTTCGACT+TGG | - | chr6_3:39538344-39538363 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+CGG | + | chr6_3:39538345-39538364 | Msa0950730:CDS | 65.0% | |
| TCTGCTTCCGTCGGCAGCAG+TGG | - | chr6_3:39536217-39536236 | None:intergenic | 65.0% | |
| GCTGCCGACGGAAGCAGAGA+AGG | + | chr6_3:39536219-39536238 | Msa0950730:CDS | 65.0% | |
| ! | CGGTGTCGGACACCGACACT+AGG | + | chr6_3:39536861-39536880 | Msa0950730:intron | 65.0% |
| GCCGAGCAGCTGCTTCGACT+TGG | - | chr6_3:39538344-39538363 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+CGG | + | chr6_3:39538345-39538364 | Msa0950730:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 39536186 | 39538446 | 39536186 | ID=Msa0950730;Name=Msa0950730 |
| chr6_3 | mRNA | 39536186 | 39538446 | 39536186 | ID=Msa0950730-mRNA-1;Parent=Msa0950730;Name=Msa0950730-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|300 |
| chr6_3 | exon | 39536186 | 39536428 | 39536186 | ID=Msa0950730-mRNA-1:exon:9560;Parent=Msa0950730-mRNA-1 |
| chr6_3 | exon | 39537787 | 39538446 | 39537787 | ID=Msa0950730-mRNA-1:exon:9561;Parent=Msa0950730-mRNA-1 |
| chr6_3 | CDS | 39536186 | 39536428 | 39536186 | ID=Msa0950730-mRNA-1:cds;Parent=Msa0950730-mRNA-1 |
| chr6_3 | CDS | 39537787 | 39538446 | 39537787 | ID=Msa0950730-mRNA-1:cds;Parent=Msa0950730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
