Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0950740 | sp|Q94BZ5|HSFA5_ARATH | 56.710 | 231 | 98 | 2 | 1 | 229 | 1 | 231 | 2.05e-84 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0950740 | A0A072UAD0 | 69.801 | 351 | 52 | 4 | 1 | 321 | 1 | 327 | 2.46e-166 | 475 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0950740 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0950740 | MtrunA17_Chr6g0467041 | 69.801 | 351 | 52 | 4 | 1 | 321 | 1 | 327 | 4.73e-170 | 475 |
| Msa0950740 | MtrunA17_Chr8g0378061 | 77.181 | 298 | 29 | 4 | 23 | 281 | 23 | 320 | 8.03e-156 | 445 |
| Msa0950740 | MtrunA17_Chr8g0378061 | 80.435 | 46 | 9 | 0 | 278 | 323 | 412 | 457 | 1.34e-16 | 80.1 |
| Msa0950740 | MtrunA17_Chr2g0330821 | 57.288 | 295 | 106 | 6 | 1 | 280 | 60 | 349 | 2.25e-102 | 304 |
| Msa0950740 | MtrunA17_Chr2g0330841 | 53.488 | 258 | 74 | 6 | 64 | 281 | 29 | 280 | 9.88e-76 | 238 |
| Msa0950740 | MtrunA17_Chr8g0379701 | 38.292 | 363 | 154 | 9 | 15 | 319 | 5 | 355 | 1.46e-66 | 214 |
| Msa0950740 | MtrunA17_Chr5g0410881 | 50.711 | 211 | 90 | 4 | 22 | 218 | 32 | 242 | 4.75e-65 | 213 |
| Msa0950740 | MtrunA17_Chr4g0039891 | 44.976 | 209 | 103 | 3 | 20 | 216 | 10 | 218 | 9.39e-56 | 188 |
| Msa0950740 | MtrunA17_Chr1g0204741 | 43.498 | 223 | 109 | 6 | 7 | 215 | 20 | 239 | 8.45e-52 | 174 |
| Msa0950740 | MtrunA17_Chr7g0260331 | 45.411 | 207 | 103 | 4 | 19 | 215 | 46 | 252 | 8.49e-51 | 172 |
| Msa0950740 | MtrunA17_Chr3g0135831 | 43.627 | 204 | 109 | 3 | 19 | 217 | 43 | 245 | 8.69e-51 | 172 |
| Msa0950740 | MtrunA17_Chr1g0185131 | 43.069 | 202 | 103 | 3 | 22 | 218 | 32 | 226 | 2.79e-47 | 162 |
| Msa0950740 | MtrunA17_Chr4g0071051 | 44.624 | 186 | 99 | 2 | 19 | 203 | 98 | 280 | 3.75e-46 | 161 |
| Msa0950740 | MtrunA17_Chr8g0392001 | 48.205 | 195 | 88 | 6 | 20 | 201 | 20 | 214 | 1.25e-45 | 159 |
| Msa0950740 | MtrunA17_Chr3g0134031 | 66.667 | 102 | 34 | 0 | 12 | 113 | 14 | 115 | 8.96e-45 | 156 |
| Msa0950740 | MtrunA17_Chr6g0485571 | 40.654 | 214 | 100 | 2 | 20 | 219 | 9 | 209 | 7.46e-43 | 150 |
| Msa0950740 | MtrunA17_Chr5g0402291 | 61.321 | 106 | 41 | 0 | 17 | 122 | 4 | 109 | 2.81e-42 | 147 |
| Msa0950740 | MtrunA17_Chr5g0441531 | 68.817 | 93 | 29 | 0 | 21 | 113 | 24 | 116 | 6.93e-42 | 145 |
| Msa0950740 | MtrunA17_Chr5g0397881 | 59.259 | 108 | 44 | 0 | 6 | 113 | 8 | 115 | 3.66e-41 | 147 |
| Msa0950740 | MtrunA17_Chr2g0284481 | 58.333 | 108 | 45 | 0 | 12 | 119 | 5 | 112 | 3.33e-40 | 144 |
| Msa0950740 | MtrunA17_Chr6g0472421 | 62.366 | 93 | 35 | 0 | 21 | 113 | 32 | 124 | 6.23e-38 | 137 |
| Msa0950740 | MtrunA17_Chr7g0257331 | 51.327 | 113 | 55 | 0 | 1 | 113 | 1 | 113 | 8.11e-38 | 134 |
| Msa0950740 | MtrunA17_Chr1g0203601 | 60.000 | 95 | 38 | 0 | 21 | 115 | 17 | 111 | 3.49e-37 | 135 |
| Msa0950740 | MtrunA17_Chr4g0047421 | 57.732 | 97 | 37 | 1 | 21 | 113 | 32 | 128 | 7.04e-34 | 123 |
| Msa0950740 | MtrunA17_Chr8g0375041 | 55.914 | 93 | 41 | 0 | 21 | 113 | 8 | 100 | 1.35e-32 | 121 |
| Msa0950740 | MtrunA17_Chr1g0179321 | 62.903 | 62 | 23 | 0 | 20 | 81 | 47 | 108 | 1.21e-24 | 96.3 |
| Msa0950740 | MtrunA17_Chr4g0023771 | 60.870 | 69 | 26 | 1 | 12 | 79 | 4 | 72 | 1.91e-20 | 85.1 |
| Msa0950740 | MtrunA17_Chr1g0179311 | 30.818 | 159 | 99 | 4 | 61 | 216 | 1 | 151 | 3.08e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0950740 | AT4G13980.1 | 56.710 | 231 | 98 | 2 | 1 | 229 | 1 | 231 | 2.08e-85 | 265 |
| Msa0950740 | AT4G17750.1 | 48.148 | 216 | 91 | 4 | 22 | 216 | 52 | 267 | 1.04e-59 | 199 |
| Msa0950740 | AT1G32330.2 | 46.383 | 235 | 107 | 5 | 1 | 216 | 16 | 250 | 3.05e-59 | 197 |
| Msa0950740 | AT1G32330.1 | 46.383 | 235 | 107 | 5 | 1 | 216 | 16 | 250 | 3.89e-59 | 197 |
| Msa0950740 | AT5G16820.1 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 8.96e-59 | 196 |
| Msa0950740 | AT5G16820.2 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 8.96e-59 | 196 |
| Msa0950740 | AT3G02990.1 | 43.348 | 233 | 119 | 4 | 8 | 228 | 9 | 240 | 1.10e-58 | 196 |
| Msa0950740 | AT5G45710.3 | 37.695 | 321 | 167 | 7 | 14 | 319 | 5 | 307 | 2.11e-54 | 181 |
| Msa0950740 | AT5G45710.1 | 37.695 | 321 | 167 | 7 | 14 | 319 | 5 | 307 | 2.11e-54 | 181 |
| Msa0950740 | AT4G18880.1 | 48.815 | 211 | 98 | 3 | 16 | 220 | 9 | 215 | 4.97e-53 | 179 |
| Msa0950740 | AT2G26150.1 | 38.028 | 284 | 159 | 7 | 19 | 292 | 41 | 317 | 3.38e-51 | 173 |
| Msa0950740 | AT2G26150.4 | 38.028 | 284 | 159 | 7 | 19 | 292 | 41 | 317 | 3.38e-51 | 173 |
| Msa0950740 | AT3G51910.1 | 42.654 | 211 | 104 | 5 | 22 | 226 | 29 | 228 | 3.38e-48 | 163 |
| Msa0950740 | AT3G22830.1 | 40.278 | 216 | 116 | 3 | 19 | 221 | 58 | 273 | 9.80e-48 | 166 |
| Msa0950740 | AT5G03720.2 | 42.079 | 202 | 109 | 3 | 20 | 213 | 53 | 254 | 2.75e-46 | 162 |
| Msa0950740 | AT5G03720.1 | 42.079 | 202 | 109 | 3 | 20 | 213 | 53 | 254 | 2.75e-46 | 162 |
| Msa0950740 | AT3G24520.1 | 44.809 | 183 | 80 | 4 | 20 | 202 | 15 | 176 | 4.46e-45 | 156 |
| Msa0950740 | AT1G46264.1 | 62.500 | 112 | 32 | 1 | 21 | 122 | 33 | 144 | 3.26e-44 | 155 |
| Msa0950740 | AT1G67970.1 | 44.792 | 192 | 93 | 5 | 20 | 201 | 17 | 205 | 3.98e-44 | 155 |
| Msa0950740 | AT5G43840.1 | 42.246 | 187 | 96 | 3 | 21 | 205 | 18 | 194 | 1.44e-42 | 149 |
| Msa0950740 | AT5G54070.1 | 43.169 | 183 | 98 | 2 | 20 | 201 | 69 | 246 | 1.88e-41 | 147 |
| Msa0950740 | AT3G63350.1 | 39.665 | 179 | 107 | 1 | 19 | 196 | 25 | 203 | 6.10e-40 | 142 |
| Msa0950740 | AT4G11660.1 | 61.000 | 100 | 39 | 0 | 14 | 113 | 51 | 150 | 1.93e-38 | 140 |
| Msa0950740 | AT4G36990.1 | 45.506 | 178 | 62 | 4 | 8 | 153 | 2 | 176 | 2.20e-38 | 137 |
| Msa0950740 | AT5G62020.1 | 50.420 | 119 | 58 | 1 | 1 | 118 | 1 | 119 | 1.94e-37 | 135 |
| Msa0950740 | AT2G41690.1 | 52.174 | 115 | 55 | 0 | 22 | 136 | 40 | 154 | 4.68e-37 | 133 |
| Msa0950740 | AT4G18870.1 | 46.591 | 88 | 47 | 0 | 22 | 109 | 146 | 233 | 1.51e-22 | 95.9 |
| Msa0950740 | AT4G18870.1 | 45.833 | 96 | 51 | 1 | 14 | 109 | 5 | 99 | 3.28e-22 | 94.7 |
| Msa0950740 | AT2G26150.3 | 32.973 | 185 | 109 | 6 | 43 | 217 | 13 | 192 | 1.21e-16 | 79.3 |
| Msa0950740 | AT2G26150.2 | 32.973 | 185 | 109 | 6 | 43 | 217 | 13 | 192 | 1.21e-16 | 79.3 |
| Msa0950740 | AT1G77570.1 | 42.391 | 92 | 49 | 3 | 19 | 106 | 22 | 113 | 1.38e-16 | 75.9 |
| Msa0950740 | AT4G19630.1 | 34.021 | 97 | 61 | 1 | 19 | 112 | 8 | 104 | 3.50e-13 | 66.2 |
| Msa0950740 | AT5G45710.4 | 27.826 | 230 | 131 | 8 | 106 | 319 | 1 | 211 | 1.92e-12 | 66.6 |
| Msa0950740 | AT5G45710.2 | 27.826 | 230 | 131 | 8 | 106 | 319 | 1 | 211 | 1.92e-12 | 66.6 |
Find 73 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCAATGCTGCCCTTTC+TGG | -0.010683 | 6_3:-39564792 | None:intergenic |
| TGCAGGCTTTCCTCATCTTC+AGG | 0.204361 | 6_3:-39565143 | None:intergenic |
| CTTCTTTGAGAAGGCTCTTC+AGG | 0.211830 | 6_3:+39564959 | Msa0950740:CDS |
| ACGGAGTGAATGATGTCTTT+TGG | 0.280090 | 6_3:+39565300 | Msa0950740:CDS |
| GAAATTGCTGTGTTTGAAAT+AGG | 0.280393 | 6_3:-39563587 | None:intergenic |
| ATAATTATAGCTTAAGAGTT+TGG | 0.284728 | 6_3:-39564856 | None:intergenic |
| CCACAGATGAGATCGTTTCT+TGG | 0.319260 | 6_3:+39563500 | Msa0950740:CDS |
| CAAAATCGAATCCATGGATT+TGG | 0.330894 | 6_3:+39565010 | Msa0950740:CDS |
| ATAACAAAAGCTTCATCGTT+TGG | 0.362747 | 6_3:+39563530 | Msa0950740:CDS |
| GCAGGCTTTCCTCATCTTCA+GGG | 0.373078 | 6_3:-39565142 | None:intergenic |
| AGAAGAACGCGAGAGAATTC+AGG | 0.373908 | 6_3:-39563559 | None:intergenic |
| AGAACTGACCAAGCAATTAC+TGG | 0.383163 | 6_3:+39565206 | Msa0950740:CDS |
| ACGTTACCTGAAGCCTCCTT+TGG | 0.398346 | 6_3:-39565254 | None:intergenic |
| TAAGAAAAGGCGATTGTCTC+AGG | 0.414889 | 6_3:+39565043 | Msa0950740:CDS |
| ACCAAGCTACCTTCGGCAAC+AGG | 0.417304 | 6_3:-39565080 | None:intergenic |
| AGCTTAAGAGTTTGGATTGA+AGG | 0.419735 | 6_3:-39564848 | None:intergenic |
| CTTTCTGACGGAGAACTGAT+AGG | 0.440803 | 6_3:+39565173 | Msa0950740:CDS |
| TGCTGTGTTTGAAATAGGTT+GGG | 0.448167 | 6_3:-39563582 | None:intergenic |
| TTGCTGTGTTTGAAATAGGT+TGG | 0.457272 | 6_3:-39563583 | None:intergenic |
| GAGTTTATTTGAGATATCTT+CGG | 0.461136 | 6_3:-39565120 | None:intergenic |
| TGGAAACTTATAATAAGAAA+AGG | 0.461564 | 6_3:+39565030 | Msa0950740:CDS |
| TCTGCTTCCGTCGGCAGCAG+TGG | 0.466428 | 6_3:-39563425 | None:intergenic |
| CCACAGTCATAGTCATCCTC+CGG | 0.469987 | 6_3:+39564755 | Msa0950740:CDS |
| GCCGAGCAGCTGCTTCGACT+TGG | 0.471786 | 6_3:-39565277 | None:intergenic |
| AAAATCAGATCCTGATCGTT+GGG | 0.473476 | 6_3:+39564662 | Msa0950740:CDS |
| GCTGATCCAAAGGAGGCTTC+AGG | 0.474888 | 6_3:+39565248 | Msa0950740:CDS |
| TTCCCGCAAAATCGAATCCA+TGG | 0.478636 | 6_3:+39565004 | Msa0950740:CDS |
| TTGGCAAACTCCCAACGATC+AGG | 0.478885 | 6_3:-39564672 | None:intergenic |
| GCTTAAGAGTTTGGATTGAA+GGG | 0.480417 | 6_3:-39564847 | None:intergenic |
| ATTATAAGTTTCCAAATCCA+TGG | 0.481800 | 6_3:-39565021 | None:intergenic |
| GCCTGTTGCCGAAGGTAGCT+TGG | 0.482063 | 6_3:+39565079 | Msa0950740:CDS |
| AGATCCAGAAAGGGCAGCAT+TGG | 0.494908 | 6_3:+39564788 | Msa0950740:CDS |
| CGACGGAAGCAGAGAAGGTA+TGG | 0.499479 | 6_3:+39563435 | Msa0950740:CDS |
| TGAGACAGAAAAGCTTCAGC+TGG | 0.500611 | 6_3:+39564881 | Msa0950740:CDS |
| ATTGAGCTGACGGATGAAGC+TGG | 0.506271 | 6_3:-39563611 | None:intergenic |
| TTTGCAGAACTTCTTTGAGA+AGG | 0.509914 | 6_3:+39564950 | Msa0950740:CDS |
| GAACTGACCAAGCAATTACT+GGG | 0.527335 | 6_3:+39565207 | Msa0950740:CDS |
| TGGATTAACCAAGCTACCTT+CGG | 0.533584 | 6_3:-39565087 | None:intergenic |
| TACTAATGAGGCTGATCCAA+AGG | 0.534971 | 6_3:+39565238 | Msa0950740:CDS |
| ATATCTTCGGCAATATTCCA+TGG | 0.535929 | 6_3:-39565107 | None:intergenic |
| GAAAATCAGATCCTGATCGT+TGG | 0.543561 | 6_3:+39564661 | Msa0950740:CDS |
| TCATACGTCTTCTGAAGAAA+CGG | 0.543831 | 6_3:-39563460 | None:intergenic |
| GTCGAAGCAGCTGCTCGGCA+CGG | 0.548207 | 6_3:+39565281 | Msa0950740:CDS |
| TCAGCGGCGATTGGAAGGCA+TGG | 0.549084 | 6_3:+39564911 | Msa0950740:CDS |
| TCCAAGTCGAAGCAGCTGCT+CGG | 0.549998 | 6_3:+39565276 | Msa0950740:CDS |
| CCGGAGGATGACTATGACTG+TGG | 0.551542 | 6_3:-39564755 | None:intergenic |
| CACAGTCATAGTCATCCTCC+GGG | 0.559092 | 6_3:+39564756 | Msa0950740:CDS |
| TTCTGCTGTAGATCCAGAAA+GGG | 0.565003 | 6_3:+39564779 | Msa0950740:CDS |
| AAGGTAGCTTGGTTAATCCA+TGG | 0.568191 | 6_3:+39565090 | Msa0950740:CDS |
| GTTCTGCTGTAGATCCAGAA+AGG | 0.569845 | 6_3:+39564778 | Msa0950740:CDS |
| GACTGTGGATAGGTTTCTTG+CGG | 0.574041 | 6_3:-39564740 | None:intergenic |
| AAATAAACTCCCTGAAGATG+AGG | 0.580535 | 6_3:+39565133 | Msa0950740:CDS |
| GCTGCCGACGGAAGCAGAGA+AGG | 0.581055 | 6_3:+39563430 | Msa0950740:CDS |
| AAGATGCCCCAGTAATTGCT+TGG | 0.581078 | 6_3:-39565214 | None:intergenic |
| AGAAACGATCTCATCTGTGG+TGG | 0.582151 | 6_3:-39563497 | None:intergenic |
| GATTGGAAGGCATGGAGAAG+AGG | 0.593047 | 6_3:+39564919 | Msa0950740:CDS |
| CACATGCAGCCTGTTGCCGA+AGG | 0.596050 | 6_3:+39565071 | Msa0950740:CDS |
| TCTTCATTGTCTGAACAGCA+TGG | 0.597736 | 6_3:-39565344 | None:intergenic |
| TTACATAGGTATTGAGCTGA+CGG | 0.598207 | 6_3:-39563621 | None:intergenic |
| TCATCAGCCACTGCTGCCGA+CGG | 0.606067 | 6_3:+39563418 | Msa0950740:CDS |
| TCTGGATCTACAGCAGAACC+CGG | 0.614712 | 6_3:-39564774 | None:intergenic |
| GGATGACTATGACTGTGGAT+AGG | 0.617132 | 6_3:-39564750 | None:intergenic |
| CATACCTTCTCTGCTTCCGT+CGG | 0.623107 | 6_3:-39563434 | None:intergenic |
| GAAACGATCTCATCTGTGGT+GGG | 0.626600 | 6_3:-39563496 | None:intergenic |
| AGAACGCGAGAGAATTCAGG+AGG | 0.628084 | 6_3:-39563556 | None:intergenic |
| CCAAGAAACGATCTCATCTG+TGG | 0.633047 | 6_3:-39563500 | None:intergenic |
| ATGCTGTTCAGACAATGAAG+AGG | 0.637659 | 6_3:+39565346 | Msa0950740:CDS |
| GAACGCGAGAGAATTCAGGA+GGG | 0.662504 | 6_3:-39563555 | None:intergenic |
| TCTTCAGAAGACGTATGACA+TGG | 0.665030 | 6_3:+39563465 | Msa0950740:CDS |
| TAATGAGGCTGATCCAAAGG+AGG | 0.671930 | 6_3:+39565241 | Msa0950740:CDS |
| GCAGTGGCTGATGATGATTG+TGG | 0.706595 | 6_3:-39563409 | None:intergenic |
| AACTGACCAAGCAATTACTG+GGG | 0.734160 | 6_3:+39565208 | Msa0950740:CDS |
| GGATCTACAGCAGAACCCGG+AGG | 0.744225 | 6_3:-39564771 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTTATAAATTTTTCAT+TGG | - | chr6_3:39564694-39564713 | None:intergenic | 10.0% |
| !!! | ATCTTTTATAAATTTTTCAT+TGG | - | chr6_3:39564694-39564713 | None:intergenic | 10.0% |
| !! | TTATCATATTTATATAGTTC+AGG | - | chr6_3:39564306-39564325 | None:intergenic | 15.0% |
| !!! | ATGTATGTTTTAATTTGTTA+CGG | + | chr6_3:39564606-39564625 | Msa0950740:intron | 15.0% |
| !! | TTATCATATTTATATAGTTC+AGG | - | chr6_3:39564306-39564325 | None:intergenic | 15.0% |
| !!! | ATGTATGTTTTAATTTGTTA+CGG | + | chr6_3:39564606-39564625 | Msa0950740:intron | 15.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | + | chr6_3:39563736-39563755 | Msa0950740:intron | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | + | chr6_3:39563842-39563861 | Msa0950740:intron | 20.0% |
| !! | ATTATTTCATTGAGTTTAGT+TGG | + | chr6_3:39563882-39563901 | Msa0950740:intron | 20.0% |
| !! | AGGATTAAACAATAAAAATC+AGG | - | chr6_3:39564335-39564354 | None:intergenic | 20.0% |
| !! | ATATTCTTGTAGAGATTTAA+TGG | + | chr6_3:39564532-39564551 | Msa0950740:intron | 20.0% |
| !! | ATAATTATAGCTTAAGAGTT+TGG | - | chr6_3:39564859-39564878 | None:intergenic | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | + | chr6_3:39565030-39565049 | Msa0950740:CDS | 20.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | + | chr6_3:39563736-39563755 | Msa0950740:intron | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | + | chr6_3:39563842-39563861 | Msa0950740:intron | 20.0% |
| !! | ATTATTTCATTGAGTTTAGT+TGG | + | chr6_3:39563882-39563901 | Msa0950740:intron | 20.0% |
| !! | AGGATTAAACAATAAAAATC+AGG | - | chr6_3:39564335-39564354 | None:intergenic | 20.0% |
| !! | ATATTCTTGTAGAGATTTAA+TGG | + | chr6_3:39564532-39564551 | Msa0950740:intron | 20.0% |
| !! | ATAATTATAGCTTAAGAGTT+TGG | - | chr6_3:39564859-39564878 | None:intergenic | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | + | chr6_3:39565030-39565049 | Msa0950740:CDS | 20.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | + | chr6_3:39563859-39563878 | Msa0950740:intron | 25.0% |
| !!! | TGAGATATTATAGTCTTGTA+TGG | + | chr6_3:39563945-39563964 | Msa0950740:intron | 25.0% |
| ! | ATACTGAATTATGTCATTGT+CGG | - | chr6_3:39564036-39564055 | None:intergenic | 25.0% |
| ! | TTCAGTATAATCATATGTGT+CGG | + | chr6_3:39564048-39564067 | Msa0950740:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | - | chr6_3:39564262-39564281 | None:intergenic | 25.0% |
| !! | TCTGAATATCACACTATTTT+TGG | + | chr6_3:39564273-39564292 | Msa0950740:intron | 25.0% |
| ! | GAAATTGATATCTAAGTCTT+AGG | + | chr6_3:39564414-39564433 | Msa0950740:intron | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | + | chr6_3:39564447-39564466 | Msa0950740:intron | 25.0% |
| ! | CTTCATTAAACAAAAACTTC+AGG | - | chr6_3:39564511-39564530 | None:intergenic | 25.0% |
| ! | AATGGTAAATCGTTCAAAAT+AGG | + | chr6_3:39564550-39564569 | Msa0950740:intron | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | - | chr6_3:39565024-39565043 | None:intergenic | 25.0% |
| !! | GAGTTTATTTGAGATATCTT+CGG | - | chr6_3:39565123-39565142 | None:intergenic | 25.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | + | chr6_3:39563859-39563878 | Msa0950740:intron | 25.0% |
| !!! | TGAGATATTATAGTCTTGTA+TGG | + | chr6_3:39563945-39563964 | Msa0950740:intron | 25.0% |
| ! | ATACTGAATTATGTCATTGT+CGG | - | chr6_3:39564036-39564055 | None:intergenic | 25.0% |
| ! | TTCAGTATAATCATATGTGT+CGG | + | chr6_3:39564048-39564067 | Msa0950740:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | - | chr6_3:39564262-39564281 | None:intergenic | 25.0% |
| !! | TCTGAATATCACACTATTTT+TGG | + | chr6_3:39564273-39564292 | Msa0950740:intron | 25.0% |
| ! | GAAATTGATATCTAAGTCTT+AGG | + | chr6_3:39564414-39564433 | Msa0950740:intron | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | + | chr6_3:39564447-39564466 | Msa0950740:intron | 25.0% |
| ! | CTTCATTAAACAAAAACTTC+AGG | - | chr6_3:39564511-39564530 | None:intergenic | 25.0% |
| ! | AATGGTAAATCGTTCAAAAT+AGG | + | chr6_3:39564550-39564569 | Msa0950740:intron | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | - | chr6_3:39565024-39565043 | None:intergenic | 25.0% |
| !! | GAGTTTATTTGAGATATCTT+CGG | - | chr6_3:39565123-39565142 | None:intergenic | 25.0% |
| ATAACAAAAGCTTCATCGTT+TGG | + | chr6_3:39563530-39563549 | Msa0950740:CDS | 30.0% | |
| ! | GAAATTGCTGTGTTTGAAAT+AGG | - | chr6_3:39563590-39563609 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | + | chr6_3:39563770-39563789 | Msa0950740:intron | 30.0% | |
| AAAAAAATTTCTGCAGCATC+TGG | + | chr6_3:39564199-39564218 | Msa0950740:intron | 30.0% | |
| TTGATATCTAAGTCTTAGGT+AGG | + | chr6_3:39564418-39564437 | Msa0950740:intron | 30.0% | |
| TGATATCTAAGTCTTAGGTA+GGG | + | chr6_3:39564419-39564438 | Msa0950740:intron | 30.0% | |
| ATCGTTCAAAATAGGTCTTA+TGG | + | chr6_3:39564558-39564577 | Msa0950740:intron | 30.0% | |
| !! | ATTTACGTGTGCTTTTTATC+AGG | + | chr6_3:39564632-39564651 | Msa0950740:intron | 30.0% |
| !! | TTTACGTGTGCTTTTTATCA+GGG | + | chr6_3:39564633-39564652 | Msa0950740:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | + | chr6_3:39564710-39564729 | Msa0950740:CDS | 30.0% | |
| ATAACAAAAGCTTCATCGTT+TGG | + | chr6_3:39563530-39563549 | Msa0950740:CDS | 30.0% | |
| ! | GAAATTGCTGTGTTTGAAAT+AGG | - | chr6_3:39563590-39563609 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | + | chr6_3:39563770-39563789 | Msa0950740:intron | 30.0% | |
| AAAAAAATTTCTGCAGCATC+TGG | + | chr6_3:39564199-39564218 | Msa0950740:intron | 30.0% | |
| TTGATATCTAAGTCTTAGGT+AGG | + | chr6_3:39564418-39564437 | Msa0950740:intron | 30.0% | |
| TGATATCTAAGTCTTAGGTA+GGG | + | chr6_3:39564419-39564438 | Msa0950740:intron | 30.0% | |
| ATCGTTCAAAATAGGTCTTA+TGG | + | chr6_3:39564558-39564577 | Msa0950740:intron | 30.0% | |
| !! | ATTTACGTGTGCTTTTTATC+AGG | + | chr6_3:39564632-39564651 | Msa0950740:intron | 30.0% |
| !! | TTTACGTGTGCTTTTTATCA+GGG | + | chr6_3:39564633-39564652 | Msa0950740:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | + | chr6_3:39564710-39564729 | Msa0950740:CDS | 30.0% | |
| ! | TCATACGTCTTCTGAAGAAA+CGG | - | chr6_3:39563463-39563482 | None:intergenic | 35.0% |
| ! | TGCTGTGTTTGAAATAGGTT+GGG | - | chr6_3:39563585-39563604 | None:intergenic | 35.0% |
| ! | TTGCTGTGTTTGAAATAGGT+TGG | - | chr6_3:39563586-39563605 | None:intergenic | 35.0% |
| !! | TTACATAGGTATTGAGCTGA+CGG | - | chr6_3:39563624-39563643 | None:intergenic | 35.0% |
| ! | TAGCGTGAATTGACTTACAT+AGG | - | chr6_3:39563638-39563657 | None:intergenic | 35.0% |
| ATCCATCTTTCAACATTCTC+AGG | - | chr6_3:39563926-39563945 | None:intergenic | 35.0% | |
| AAATTAAGACCTACGAAGCT+AGG | - | chr6_3:39564116-39564135 | None:intergenic | 35.0% | |
| ! | GCTTCGTAGGTCTTAATTTT+CGG | + | chr6_3:39564117-39564136 | Msa0950740:intron | 35.0% |
| !! | TAGGTCTTAATTTTCGGTGT+GGG | + | chr6_3:39564123-39564142 | Msa0950740:intron | 35.0% |
| ! | TGTGAATTGGTGGGTAATTT+AGG | + | chr6_3:39564148-39564167 | Msa0950740:intron | 35.0% |
| AAAACTTCAGGAAGCAAATC+TGG | - | chr6_3:39564499-39564518 | None:intergenic | 35.0% | |
| AAAATCAGATCCTGATCGTT+GGG | + | chr6_3:39564662-39564681 | Msa0950740:CDS | 35.0% | |
| GCTTAAGAGTTTGGATTGAA+GGG | - | chr6_3:39564850-39564869 | None:intergenic | 35.0% | |
| AGCTTAAGAGTTTGGATTGA+AGG | - | chr6_3:39564851-39564870 | None:intergenic | 35.0% | |
| ! | TTTGCAGAACTTCTTTGAGA+AGG | + | chr6_3:39564950-39564969 | Msa0950740:CDS | 35.0% |
| ! | AATCCATGGATTCGATTTTG+CGG | - | chr6_3:39565010-39565029 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | + | chr6_3:39565010-39565029 | Msa0950740:CDS | 35.0% | |
| ATATCTTCGGCAATATTCCA+TGG | - | chr6_3:39565110-39565129 | None:intergenic | 35.0% | |
| AAATAAACTCCCTGAAGATG+AGG | + | chr6_3:39565133-39565152 | Msa0950740:CDS | 35.0% | |
| CTGCAGAAAAATCTTTCTGA+CGG | + | chr6_3:39565161-39565180 | Msa0950740:CDS | 35.0% | |
| ! | TCATACGTCTTCTGAAGAAA+CGG | - | chr6_3:39563463-39563482 | None:intergenic | 35.0% |
| ! | TGCTGTGTTTGAAATAGGTT+GGG | - | chr6_3:39563585-39563604 | None:intergenic | 35.0% |
| ! | TTGCTGTGTTTGAAATAGGT+TGG | - | chr6_3:39563586-39563605 | None:intergenic | 35.0% |
| !! | TTACATAGGTATTGAGCTGA+CGG | - | chr6_3:39563624-39563643 | None:intergenic | 35.0% |
| ! | TAGCGTGAATTGACTTACAT+AGG | - | chr6_3:39563638-39563657 | None:intergenic | 35.0% |
| ATCCATCTTTCAACATTCTC+AGG | - | chr6_3:39563926-39563945 | None:intergenic | 35.0% | |
| AAATTAAGACCTACGAAGCT+AGG | - | chr6_3:39564116-39564135 | None:intergenic | 35.0% | |
| ! | GCTTCGTAGGTCTTAATTTT+CGG | + | chr6_3:39564117-39564136 | Msa0950740:intron | 35.0% |
| !! | TAGGTCTTAATTTTCGGTGT+GGG | + | chr6_3:39564123-39564142 | Msa0950740:intron | 35.0% |
| ! | TGTGAATTGGTGGGTAATTT+AGG | + | chr6_3:39564148-39564167 | Msa0950740:intron | 35.0% |
| AAAACTTCAGGAAGCAAATC+TGG | - | chr6_3:39564499-39564518 | None:intergenic | 35.0% | |
| AAAATCAGATCCTGATCGTT+GGG | + | chr6_3:39564662-39564681 | Msa0950740:CDS | 35.0% | |
| GCTTAAGAGTTTGGATTGAA+GGG | - | chr6_3:39564850-39564869 | None:intergenic | 35.0% | |
| AGCTTAAGAGTTTGGATTGA+AGG | - | chr6_3:39564851-39564870 | None:intergenic | 35.0% | |
| ! | TTTGCAGAACTTCTTTGAGA+AGG | + | chr6_3:39564950-39564969 | Msa0950740:CDS | 35.0% |
| ! | AATCCATGGATTCGATTTTG+CGG | - | chr6_3:39565010-39565029 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | + | chr6_3:39565010-39565029 | Msa0950740:CDS | 35.0% | |
| ATATCTTCGGCAATATTCCA+TGG | - | chr6_3:39565110-39565129 | None:intergenic | 35.0% | |
| AAATAAACTCCCTGAAGATG+AGG | + | chr6_3:39565133-39565152 | Msa0950740:CDS | 35.0% | |
| CTGCAGAAAAATCTTTCTGA+CGG | + | chr6_3:39565161-39565180 | Msa0950740:CDS | 35.0% | |
| TCTTCAGAAGACGTATGACA+TGG | + | chr6_3:39563465-39563484 | Msa0950740:CDS | 40.0% | |
| GACCTGAGAATGTTGAAAGA+TGG | + | chr6_3:39563921-39563940 | Msa0950740:intron | 40.0% | |
| TTCGTTGTTTGTGTCGTGTT+TGG | - | chr6_3:39564004-39564023 | None:intergenic | 40.0% | |
| ! | GTAGGTCTTAATTTTCGGTG+TGG | + | chr6_3:39564122-39564141 | Msa0950740:intron | 40.0% |
| !! | CATCTGGATCTTGGTAATGA+TGG | + | chr6_3:39564215-39564234 | Msa0950740:intron | 40.0% |
| GAAAATCAGATCCTGATCGT+TGG | + | chr6_3:39564661-39564680 | Msa0950740:CDS | 40.0% | |
| TTCTGCTGTAGATCCAGAAA+GGG | + | chr6_3:39564779-39564798 | Msa0950740:CDS | 40.0% | |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | + | chr6_3:39564895-39564914 | Msa0950740:CDS | 40.0% |
| ! | ATCCATGGATTCGATTTTGC+GGG | - | chr6_3:39565009-39565028 | None:intergenic | 40.0% |
| TAAGAAAAGGCGATTGTCTC+AGG | + | chr6_3:39565043-39565062 | Msa0950740:CDS | 40.0% | |
| TGGATTAACCAAGCTACCTT+CGG | - | chr6_3:39565090-39565109 | None:intergenic | 40.0% | |
| AAGGTAGCTTGGTTAATCCA+TGG | + | chr6_3:39565090-39565109 | Msa0950740:CDS | 40.0% | |
| ! | CGTCAGAAAGATTTTTCTGC+AGG | - | chr6_3:39565163-39565182 | None:intergenic | 40.0% |
| AGAACTGACCAAGCAATTAC+TGG | + | chr6_3:39565206-39565225 | Msa0950740:CDS | 40.0% | |
| GAACTGACCAAGCAATTACT+GGG | + | chr6_3:39565207-39565226 | Msa0950740:CDS | 40.0% | |
| AACTGACCAAGCAATTACTG+GGG | + | chr6_3:39565208-39565227 | Msa0950740:CDS | 40.0% | |
| !! | TGGGGCATCTTTTACTAATG+AGG | + | chr6_3:39565226-39565245 | Msa0950740:CDS | 40.0% |
| TACTAATGAGGCTGATCCAA+AGG | + | chr6_3:39565238-39565257 | Msa0950740:CDS | 40.0% | |
| ! | ACGGAGTGAATGATGTCTTT+TGG | + | chr6_3:39565300-39565319 | Msa0950740:CDS | 40.0% |
| ! | CGGAGTGAATGATGTCTTTT+GGG | + | chr6_3:39565301-39565320 | Msa0950740:CDS | 40.0% |
| TCTTCATTGTCTGAACAGCA+TGG | - | chr6_3:39565347-39565366 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | + | chr6_3:39565346-39565365 | Msa0950740:CDS | 40.0% | |
| TCTTCAGAAGACGTATGACA+TGG | + | chr6_3:39563465-39563484 | Msa0950740:CDS | 40.0% | |
| GACCTGAGAATGTTGAAAGA+TGG | + | chr6_3:39563921-39563940 | Msa0950740:intron | 40.0% | |
| TTCGTTGTTTGTGTCGTGTT+TGG | - | chr6_3:39564004-39564023 | None:intergenic | 40.0% | |
| ! | GTAGGTCTTAATTTTCGGTG+TGG | + | chr6_3:39564122-39564141 | Msa0950740:intron | 40.0% |
| !! | CATCTGGATCTTGGTAATGA+TGG | + | chr6_3:39564215-39564234 | Msa0950740:intron | 40.0% |
| GAAAATCAGATCCTGATCGT+TGG | + | chr6_3:39564661-39564680 | Msa0950740:CDS | 40.0% | |
| TTCTGCTGTAGATCCAGAAA+GGG | + | chr6_3:39564779-39564798 | Msa0950740:CDS | 40.0% | |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | + | chr6_3:39564895-39564914 | Msa0950740:CDS | 40.0% |
| ! | ATCCATGGATTCGATTTTGC+GGG | - | chr6_3:39565009-39565028 | None:intergenic | 40.0% |
| TAAGAAAAGGCGATTGTCTC+AGG | + | chr6_3:39565043-39565062 | Msa0950740:CDS | 40.0% | |
| TGGATTAACCAAGCTACCTT+CGG | - | chr6_3:39565090-39565109 | None:intergenic | 40.0% | |
| AAGGTAGCTTGGTTAATCCA+TGG | + | chr6_3:39565090-39565109 | Msa0950740:CDS | 40.0% | |
| ! | CGTCAGAAAGATTTTTCTGC+AGG | - | chr6_3:39565163-39565182 | None:intergenic | 40.0% |
| AGAACTGACCAAGCAATTAC+TGG | + | chr6_3:39565206-39565225 | Msa0950740:CDS | 40.0% | |
| GAACTGACCAAGCAATTACT+GGG | + | chr6_3:39565207-39565226 | Msa0950740:CDS | 40.0% | |
| AACTGACCAAGCAATTACTG+GGG | + | chr6_3:39565208-39565227 | Msa0950740:CDS | 40.0% | |
| !! | TGGGGCATCTTTTACTAATG+AGG | + | chr6_3:39565226-39565245 | Msa0950740:CDS | 40.0% |
| TACTAATGAGGCTGATCCAA+AGG | + | chr6_3:39565238-39565257 | Msa0950740:CDS | 40.0% | |
| ! | ACGGAGTGAATGATGTCTTT+TGG | + | chr6_3:39565300-39565319 | Msa0950740:CDS | 40.0% |
| ! | CGGAGTGAATGATGTCTTTT+GGG | + | chr6_3:39565301-39565320 | Msa0950740:CDS | 40.0% |
| TCTTCATTGTCTGAACAGCA+TGG | - | chr6_3:39565347-39565366 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | + | chr6_3:39565346-39565365 | Msa0950740:CDS | 40.0% | |
| GAAACGATCTCATCTGTGGT+GGG | - | chr6_3:39563499-39563518 | None:intergenic | 45.0% | |
| AGAAACGATCTCATCTGTGG+TGG | - | chr6_3:39563500-39563519 | None:intergenic | 45.0% | |
| CCAAGAAACGATCTCATCTG+TGG | - | chr6_3:39563503-39563522 | None:intergenic | 45.0% | |
| CCACAGATGAGATCGTTTCT+TGG | + | chr6_3:39563500-39563519 | Msa0950740:CDS | 45.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | - | chr6_3:39563562-39563581 | None:intergenic | 45.0% | |
| TTTCTGCAGCATCTGGATCT+TGG | + | chr6_3:39564206-39564225 | Msa0950740:intron | 45.0% | |
| CGTAGACATCTCAAGCATCT+AGG | + | chr6_3:39564370-39564389 | Msa0950740:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+CGG | - | chr6_3:39564496-39564515 | None:intergenic | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | - | chr6_3:39564743-39564762 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | - | chr6_3:39564753-39564772 | None:intergenic | 45.0% | |
| GTTCTGCTGTAGATCCAGAA+AGG | + | chr6_3:39564778-39564797 | Msa0950740:CDS | 45.0% | |
| TGAGACAGAAAAGCTTCAGC+TGG | + | chr6_3:39564881-39564900 | Msa0950740:CDS | 45.0% | |
| ! | CTTCTTTGAGAAGGCTCTTC+AGG | + | chr6_3:39564959-39564978 | Msa0950740:CDS | 45.0% |
| TTCCCGCAAAATCGAATCCA+TGG | + | chr6_3:39565004-39565023 | Msa0950740:CDS | 45.0% | |
| CTTTCTGACGGAGAACTGAT+AGG | + | chr6_3:39565173-39565192 | Msa0950740:CDS | 45.0% | |
| AAGATGCCCCAGTAATTGCT+TGG | - | chr6_3:39565217-39565236 | None:intergenic | 45.0% | |
| TAATGAGGCTGATCCAAAGG+AGG | + | chr6_3:39565241-39565260 | Msa0950740:CDS | 45.0% | |
| GAAACGATCTCATCTGTGGT+GGG | - | chr6_3:39563499-39563518 | None:intergenic | 45.0% | |
| AGAAACGATCTCATCTGTGG+TGG | - | chr6_3:39563500-39563519 | None:intergenic | 45.0% | |
| CCAAGAAACGATCTCATCTG+TGG | - | chr6_3:39563503-39563522 | None:intergenic | 45.0% | |
| CCACAGATGAGATCGTTTCT+TGG | + | chr6_3:39563500-39563519 | Msa0950740:CDS | 45.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | - | chr6_3:39563562-39563581 | None:intergenic | 45.0% | |
| TTTCTGCAGCATCTGGATCT+TGG | + | chr6_3:39564206-39564225 | Msa0950740:intron | 45.0% | |
| CGTAGACATCTCAAGCATCT+AGG | + | chr6_3:39564370-39564389 | Msa0950740:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+CGG | - | chr6_3:39564496-39564515 | None:intergenic | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | - | chr6_3:39564743-39564762 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | - | chr6_3:39564753-39564772 | None:intergenic | 45.0% | |
| GTTCTGCTGTAGATCCAGAA+AGG | + | chr6_3:39564778-39564797 | Msa0950740:CDS | 45.0% | |
| TGAGACAGAAAAGCTTCAGC+TGG | + | chr6_3:39564881-39564900 | Msa0950740:CDS | 45.0% | |
| ! | CTTCTTTGAGAAGGCTCTTC+AGG | + | chr6_3:39564959-39564978 | Msa0950740:CDS | 45.0% |
| TTCCCGCAAAATCGAATCCA+TGG | + | chr6_3:39565004-39565023 | Msa0950740:CDS | 45.0% | |
| CTTTCTGACGGAGAACTGAT+AGG | + | chr6_3:39565173-39565192 | Msa0950740:CDS | 45.0% | |
| AAGATGCCCCAGTAATTGCT+TGG | - | chr6_3:39565217-39565236 | None:intergenic | 45.0% | |
| TAATGAGGCTGATCCAAAGG+AGG | + | chr6_3:39565241-39565260 | Msa0950740:CDS | 45.0% | |
| ! | GCAGTGGCTGATGATGATTG+TGG | - | chr6_3:39563412-39563431 | None:intergenic | 50.0% |
| CATACCTTCTCTGCTTCCGT+CGG | - | chr6_3:39563437-39563456 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | - | chr6_3:39563558-39563577 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | - | chr6_3:39563559-39563578 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | - | chr6_3:39563614-39563633 | None:intergenic | 50.0% |
| TCCTCAGATTAGGTGTGTCC+TGG | - | chr6_3:39564089-39564108 | None:intergenic | 50.0% | |
| GCTAGGACACTCCTCAGATT+AGG | - | chr6_3:39564099-39564118 | None:intergenic | 50.0% | |
| ! | TTCGGTGTGGGTGTGTGAAT+TGG | + | chr6_3:39564135-39564154 | Msa0950740:intron | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | + | chr6_3:39564139-39564158 | Msa0950740:intron | 50.0% | |
| CTACGATGCAGAAGAGAAGC+AGG | - | chr6_3:39564355-39564374 | None:intergenic | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | - | chr6_3:39564675-39564694 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | + | chr6_3:39564755-39564774 | Msa0950740:CDS | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | + | chr6_3:39564756-39564775 | Msa0950740:CDS | 50.0% | |
| TCTGGATCTACAGCAGAACC+CGG | - | chr6_3:39564777-39564796 | None:intergenic | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | + | chr6_3:39564788-39564807 | Msa0950740:CDS | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | - | chr6_3:39564795-39564814 | None:intergenic | 50.0% | |
| ! | GGAAGATTTTCAGCGGCGAT+TGG | + | chr6_3:39564902-39564921 | Msa0950740:CDS | 50.0% |
| ! | GATTTTCAGCGGCGATTGGA+AGG | + | chr6_3:39564906-39564925 | Msa0950740:CDS | 50.0% |
| ! | GATTGGAAGGCATGGAGAAG+AGG | + | chr6_3:39564919-39564938 | Msa0950740:CDS | 50.0% |
| GCAGGCTTTCCTCATCTTCA+GGG | - | chr6_3:39565145-39565164 | None:intergenic | 50.0% | |
| TGCAGGCTTTCCTCATCTTC+AGG | - | chr6_3:39565146-39565165 | None:intergenic | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | - | chr6_3:39565257-39565276 | None:intergenic | 50.0% | |
| ! | GCAGTGGCTGATGATGATTG+TGG | - | chr6_3:39563412-39563431 | None:intergenic | 50.0% |
| CATACCTTCTCTGCTTCCGT+CGG | - | chr6_3:39563437-39563456 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | - | chr6_3:39563558-39563577 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | - | chr6_3:39563559-39563578 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | - | chr6_3:39563614-39563633 | None:intergenic | 50.0% |
| TCCTCAGATTAGGTGTGTCC+TGG | - | chr6_3:39564089-39564108 | None:intergenic | 50.0% | |
| GCTAGGACACTCCTCAGATT+AGG | - | chr6_3:39564099-39564118 | None:intergenic | 50.0% | |
| ! | TTCGGTGTGGGTGTGTGAAT+TGG | + | chr6_3:39564135-39564154 | Msa0950740:intron | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | + | chr6_3:39564139-39564158 | Msa0950740:intron | 50.0% | |
| CTACGATGCAGAAGAGAAGC+AGG | - | chr6_3:39564355-39564374 | None:intergenic | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | - | chr6_3:39564675-39564694 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | + | chr6_3:39564755-39564774 | Msa0950740:CDS | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | + | chr6_3:39564756-39564775 | Msa0950740:CDS | 50.0% | |
| TCTGGATCTACAGCAGAACC+CGG | - | chr6_3:39564777-39564796 | None:intergenic | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | + | chr6_3:39564788-39564807 | Msa0950740:CDS | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | - | chr6_3:39564795-39564814 | None:intergenic | 50.0% | |
| ! | GGAAGATTTTCAGCGGCGAT+TGG | + | chr6_3:39564902-39564921 | Msa0950740:CDS | 50.0% |
| ! | GATTTTCAGCGGCGATTGGA+AGG | + | chr6_3:39564906-39564925 | Msa0950740:CDS | 50.0% |
| ! | GATTGGAAGGCATGGAGAAG+AGG | + | chr6_3:39564919-39564938 | Msa0950740:CDS | 50.0% |
| GCAGGCTTTCCTCATCTTCA+GGG | - | chr6_3:39565145-39565164 | None:intergenic | 50.0% | |
| TGCAGGCTTTCCTCATCTTC+AGG | - | chr6_3:39565146-39565165 | None:intergenic | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | - | chr6_3:39565257-39565276 | None:intergenic | 50.0% | |
| CGACGGAAGCAGAGAAGGTA+TGG | + | chr6_3:39563435-39563454 | Msa0950740:CDS | 55.0% | |
| GATTAGGTGTGTCCTGGCGT+CGG | - | chr6_3:39564083-39564102 | None:intergenic | 55.0% | |
| GCCAGGACACACCTAATCTG+AGG | + | chr6_3:39564085-39564104 | Msa0950740:intron | 55.0% | |
| !! | GAGGAGTGTCCTAGCTTCGT+AGG | + | chr6_3:39564104-39564123 | Msa0950740:intron | 55.0% |
| GGTGTGGGTGTGTGAATTGG+TGG | + | chr6_3:39564138-39564157 | Msa0950740:intron | 55.0% | |
| AGGAAGCAAATCTGGCGGTG+GGG | - | chr6_3:39564491-39564510 | None:intergenic | 55.0% | |
| CAGGAAGCAAATCTGGCGGT+GGG | - | chr6_3:39564492-39564511 | None:intergenic | 55.0% | |
| TCAGGAAGCAAATCTGGCGG+TGG | - | chr6_3:39564493-39564512 | None:intergenic | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | - | chr6_3:39564758-39564777 | None:intergenic | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | - | chr6_3:39565083-39565102 | None:intergenic | 55.0% | |
| GCTGATCCAAAGGAGGCTTC+AGG | + | chr6_3:39565248-39565267 | Msa0950740:CDS | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | + | chr6_3:39565276-39565295 | Msa0950740:CDS | 55.0% | |
| CGACGGAAGCAGAGAAGGTA+TGG | + | chr6_3:39563435-39563454 | Msa0950740:CDS | 55.0% | |
| GATTAGGTGTGTCCTGGCGT+CGG | - | chr6_3:39564083-39564102 | None:intergenic | 55.0% | |
| GCCAGGACACACCTAATCTG+AGG | + | chr6_3:39564085-39564104 | Msa0950740:intron | 55.0% | |
| !! | GAGGAGTGTCCTAGCTTCGT+AGG | + | chr6_3:39564104-39564123 | Msa0950740:intron | 55.0% |
| GGTGTGGGTGTGTGAATTGG+TGG | + | chr6_3:39564138-39564157 | Msa0950740:intron | 55.0% | |
| AGGAAGCAAATCTGGCGGTG+GGG | - | chr6_3:39564491-39564510 | None:intergenic | 55.0% | |
| CAGGAAGCAAATCTGGCGGT+GGG | - | chr6_3:39564492-39564511 | None:intergenic | 55.0% | |
| TCAGGAAGCAAATCTGGCGG+TGG | - | chr6_3:39564493-39564512 | None:intergenic | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | - | chr6_3:39564758-39564777 | None:intergenic | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | - | chr6_3:39565083-39565102 | None:intergenic | 55.0% | |
| GCTGATCCAAAGGAGGCTTC+AGG | + | chr6_3:39565248-39565267 | Msa0950740:CDS | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | + | chr6_3:39565276-39565295 | Msa0950740:CDS | 55.0% | |
| TCATCAGCCACTGCTGCCGA+CGG | + | chr6_3:39563418-39563437 | Msa0950740:CDS | 60.0% | |
| GGATCTACAGCAGAACCCGG+AGG | - | chr6_3:39564774-39564793 | None:intergenic | 60.0% | |
| TCAGCGGCGATTGGAAGGCA+TGG | + | chr6_3:39564911-39564930 | Msa0950740:CDS | 60.0% | |
| CACATGCAGCCTGTTGCCGA+AGG | + | chr6_3:39565071-39565090 | Msa0950740:CDS | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | + | chr6_3:39565079-39565098 | Msa0950740:CDS | 60.0% | |
| TCATCAGCCACTGCTGCCGA+CGG | + | chr6_3:39563418-39563437 | Msa0950740:CDS | 60.0% | |
| GGATCTACAGCAGAACCCGG+AGG | - | chr6_3:39564774-39564793 | None:intergenic | 60.0% | |
| TCAGCGGCGATTGGAAGGCA+TGG | + | chr6_3:39564911-39564930 | Msa0950740:CDS | 60.0% | |
| CACATGCAGCCTGTTGCCGA+AGG | + | chr6_3:39565071-39565090 | Msa0950740:CDS | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | + | chr6_3:39565079-39565098 | Msa0950740:CDS | 60.0% | |
| TCTGCTTCCGTCGGCAGCAG+TGG | - | chr6_3:39563428-39563447 | None:intergenic | 65.0% | |
| GCTGCCGACGGAAGCAGAGA+AGG | + | chr6_3:39563430-39563449 | Msa0950740:CDS | 65.0% | |
| ! | CGGTGTTAGACACCGACGCC+AGG | + | chr6_3:39564068-39564087 | Msa0950740:intron | 65.0% |
| GCCGAGCAGCTGCTTCGACT+TGG | - | chr6_3:39565280-39565299 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+CGG | + | chr6_3:39565281-39565300 | Msa0950740:CDS | 65.0% | |
| TCTGCTTCCGTCGGCAGCAG+TGG | - | chr6_3:39563428-39563447 | None:intergenic | 65.0% | |
| GCTGCCGACGGAAGCAGAGA+AGG | + | chr6_3:39563430-39563449 | Msa0950740:CDS | 65.0% | |
| ! | CGGTGTTAGACACCGACGCC+AGG | + | chr6_3:39564068-39564087 | Msa0950740:intron | 65.0% |
| GCCGAGCAGCTGCTTCGACT+TGG | - | chr6_3:39565280-39565299 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+CGG | + | chr6_3:39565281-39565300 | Msa0950740:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 39563397 | 39565382 | 39563397 | ID=Msa0950740;Name=Msa0950740 |
| chr6_3 | mRNA | 39563397 | 39565382 | 39563397 | ID=Msa0950740-mRNA-1;Parent=Msa0950740;Name=Msa0950740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|323 |
| chr6_3 | exon | 39563397 | 39563639 | 39563397 | ID=Msa0950740-mRNA-1:exon:9558;Parent=Msa0950740-mRNA-1 |
| chr6_3 | exon | 39564654 | 39565382 | 39564654 | ID=Msa0950740-mRNA-1:exon:9559;Parent=Msa0950740-mRNA-1 |
| chr6_3 | CDS | 39563397 | 39563639 | 39563397 | ID=Msa0950740-mRNA-1:cds;Parent=Msa0950740-mRNA-1 |
| chr6_3 | CDS | 39564654 | 39565382 | 39564654 | ID=Msa0950740-mRNA-1:cds;Parent=Msa0950740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
