Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951020 | XP_004516775.1 | 38.078 | 281 | 125 | 6 | 1 | 275 | 14 | 251 | 8.28e-45 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951020 | sp|Q5XEM9|ALFL5_ARATH | 71.186 | 59 | 16 | 1 | 289 | 347 | 203 | 260 | 9.28e-23 | 99.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0951020 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951020 | MtrunA17_Chr6g0457221 | 56.429 | 140 | 57 | 2 | 26 | 165 | 44 | 179 | 1.56e-40 | 151 |
| Msa0951020 | MtrunA17_Chr6g0457161 | 52.903 | 155 | 66 | 3 | 7 | 158 | 31 | 181 | 3.86e-39 | 146 |
| Msa0951020 | MtrunA17_Chr8g0343441 | 77.778 | 81 | 18 | 0 | 267 | 347 | 176 | 256 | 9.63e-31 | 117 |
| Msa0951020 | MtrunA17_Chr2g0329821 | 75.862 | 58 | 14 | 0 | 289 | 346 | 193 | 250 | 4.51e-26 | 104 |
| Msa0951020 | MtrunA17_Chr1g0150821 | 76.364 | 55 | 12 | 1 | 293 | 347 | 210 | 263 | 1.06e-23 | 98.6 |
| Msa0951020 | MtrunA17_Chr2g0300241 | 68.333 | 60 | 16 | 2 | 290 | 347 | 195 | 253 | 1.26e-21 | 92.4 |
| Msa0951020 | MtrunA17_Chr4g0076771 | 69.231 | 52 | 16 | 0 | 292 | 343 | 201 | 252 | 4.56e-21 | 90.9 |
| Msa0951020 | MtrunA17_Chr4g0006381 | 69.091 | 55 | 16 | 1 | 293 | 347 | 189 | 242 | 3.41e-20 | 88.2 |
| Msa0951020 | MtrunA17_Chr7g0242511 | 65.455 | 55 | 18 | 1 | 293 | 347 | 189 | 242 | 7.12e-19 | 84.7 |
| Msa0951020 | MtrunA17_Chr5g0402951 | 34.483 | 116 | 67 | 2 | 23 | 135 | 160 | 269 | 8.51e-14 | 71.6 |
| Msa0951020 | MtrunA17_Chr5g0402961 | 39.175 | 97 | 56 | 1 | 23 | 119 | 162 | 255 | 5.11e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951020 | AT5G38690.2 | 31.022 | 274 | 158 | 6 | 26 | 275 | 30 | 296 | 5.06e-29 | 117 |
| Msa0951020 | AT5G38690.1 | 31.022 | 274 | 158 | 6 | 26 | 275 | 30 | 296 | 5.06e-29 | 117 |
| Msa0951020 | AT1G67780.2 | 42.857 | 147 | 68 | 3 | 7 | 137 | 11 | 157 | 3.57e-28 | 115 |
| Msa0951020 | AT1G67780.1 | 42.857 | 147 | 68 | 3 | 7 | 137 | 11 | 157 | 3.57e-28 | 115 |
| Msa0951020 | AT1G67270.1 | 48.246 | 114 | 56 | 1 | 9 | 119 | 5 | 118 | 1.23e-25 | 107 |
| Msa0951020 | AT5G20510.2 | 71.186 | 59 | 16 | 1 | 289 | 347 | 162 | 219 | 5.10e-24 | 98.6 |
| Msa0951020 | AT5G20510.1 | 71.186 | 59 | 16 | 1 | 289 | 347 | 203 | 260 | 9.44e-24 | 99.0 |
| Msa0951020 | AT3G42790.1 | 74.138 | 58 | 14 | 1 | 289 | 346 | 193 | 249 | 2.05e-23 | 97.8 |
| Msa0951020 | AT2G02470.1 | 74.545 | 55 | 13 | 1 | 293 | 347 | 203 | 256 | 4.41e-23 | 97.1 |
| Msa0951020 | AT2G02470.2 | 74.545 | 55 | 13 | 1 | 293 | 347 | 194 | 247 | 5.71e-23 | 96.3 |
| Msa0951020 | AT5G26210.1 | 75.000 | 56 | 13 | 1 | 291 | 346 | 200 | 254 | 1.85e-22 | 95.1 |
| Msa0951020 | AT1G14510.1 | 68.519 | 54 | 17 | 0 | 293 | 346 | 198 | 251 | 2.35e-21 | 92.0 |
| Msa0951020 | AT5G05610.2 | 63.636 | 55 | 20 | 0 | 289 | 343 | 184 | 238 | 8.32e-19 | 84.7 |
| Msa0951020 | AT5G05610.1 | 63.636 | 55 | 20 | 0 | 289 | 343 | 184 | 238 | 8.32e-19 | 84.7 |
| Msa0951020 | AT3G11200.1 | 62.745 | 51 | 19 | 0 | 289 | 339 | 189 | 239 | 1.69e-17 | 81.3 |
| Msa0951020 | AT3G11200.2 | 62.745 | 51 | 19 | 0 | 289 | 339 | 176 | 226 | 2.29e-17 | 80.5 |
| Msa0951020 | AT2G23530.1 | 39.252 | 107 | 54 | 3 | 18 | 119 | 153 | 253 | 1.90e-13 | 71.6 |
| Msa0951020 | AT4G37110.3 | 34.615 | 130 | 81 | 3 | 23 | 152 | 83 | 208 | 2.41e-13 | 70.5 |
| Msa0951020 | AT4G37110.4 | 34.615 | 130 | 81 | 3 | 23 | 152 | 83 | 208 | 2.41e-13 | 70.5 |
| Msa0951020 | AT4G37110.2 | 34.615 | 130 | 81 | 3 | 23 | 152 | 165 | 290 | 6.72e-13 | 69.7 |
| Msa0951020 | AT4G37110.1 | 34.615 | 130 | 81 | 3 | 23 | 152 | 178 | 303 | 7.61e-13 | 69.7 |
Find 95 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACTCATACAATAAAT+TGG | 0.148698 | 6_3:-40396013 | Msa0951020:CDS |
| AAAGCATATTCTTCCTTTAT+AGG | 0.158707 | 6_3:+40396316 | None:intergenic |
| TTTATGATGGAGTTTGATTT+AGG | 0.207910 | 6_3:+40397190 | None:intergenic |
| TGGGATGGCACCATTGTTAT+TGG | 0.285100 | 6_3:-40395993 | Msa0951020:CDS |
| TCTTCCACATCCTCGTCTTT+AGG | 0.289074 | 6_3:+40395661 | None:intergenic |
| TGAATTGGTGTTGGATTTAG+AGG | 0.320517 | 6_3:+40397106 | None:intergenic |
| TTATGATGGAGTTTGATTTA+GGG | 0.355183 | 6_3:+40397191 | None:intergenic |
| TACTAATGTTGGGCCTATAA+AGG | 0.359306 | 6_3:-40396329 | Msa0951020:CDS |
| GTTATTGGTGATAATGATAT+TGG | 0.371338 | 6_3:-40395978 | Msa0951020:CDS |
| GAAGTTGATCTATCTCCATA+TGG | 0.371660 | 6_3:+40395943 | None:intergenic |
| CAGAAAATCCAGAATTCATC+AGG | 0.388348 | 6_3:+40395571 | None:intergenic |
| GGCAATGGGTACCGAGGATT+GGG | 0.397506 | 6_3:-40396072 | Msa0951020:CDS |
| GGCACATCCAATTATTCAAA+AGG | 0.404163 | 6_3:+40396613 | None:intergenic |
| TGCAAATGCCTCTACACTTC+GGG | 0.407999 | 6_3:+40396592 | None:intergenic |
| TAATTGATAATAATGCTATA+AGG | 0.408256 | 6_3:-40395917 | Msa0951020:CDS |
| TATAAAGGAAGAATATGCTT+TGG | 0.417141 | 6_3:-40396314 | Msa0951020:CDS |
| TCCTCAATTAGTTCTCTCTC+TGG | 0.418949 | 6_3:+40395894 | None:intergenic |
| TGGCAATGGGTACCGAGGAT+TGG | 0.420412 | 6_3:-40396073 | Msa0951020:CDS |
| ATAAAGGAAGAATATGCTTT+GGG | 0.425102 | 6_3:-40396313 | Msa0951020:CDS |
| ATGGGTAATAATACTAATGT+TGG | 0.425773 | 6_3:-40396340 | Msa0951020:CDS |
| GTTCGTATAGCCAAGGCATC+TGG | 0.430043 | 6_3:-40396421 | Msa0951020:CDS |
| CATGTTGTTGCAAGTGGTCG+TGG | 0.432215 | 6_3:+40397075 | None:intergenic |
| TGGGGTGAGCAGCGATGGAA+GGG | 0.432655 | 6_3:+40397139 | None:intergenic |
| TTCAACTCATACAATAAATT+GGG | 0.436614 | 6_3:-40396012 | Msa0951020:CDS |
| TCGATATGCTTAGCCCTAGC+AGG | 0.441225 | 6_3:+40395502 | None:intergenic |
| CTAAAGCATCAGCCGCCTAC+AGG | 0.441391 | 6_3:-40396451 | Msa0951020:CDS |
| CTGGGGTGAGCAGCGATGGA+AGG | 0.443550 | 6_3:+40397138 | None:intergenic |
| GGAATATATTGAATTGGTGT+TGG | 0.450499 | 6_3:+40397097 | None:intergenic |
| GGTGCATGCGGTGAGCAATA+TGG | 0.455947 | 6_3:-40395595 | Msa0951020:CDS |
| CTCTTGTTGTTATTGCATGA+TGG | 0.456815 | 6_3:+40395466 | None:intergenic |
| AATATGGCCCTGATGAATTC+TGG | 0.457151 | 6_3:-40395579 | Msa0951020:CDS |
| CTCAGAAATGCTTAGCAAGA+TGG | 0.474202 | 6_3:-40396386 | Msa0951020:CDS |
| TATGATGGAGTTTGATTTAG+GGG | 0.479970 | 6_3:+40397192 | None:intergenic |
| GAAGTGCCGACAAGAAATAA+AGG | 0.482752 | 6_3:-40396848 | Msa0951020:intron |
| TGGGTAATAATACTAATGTT+GGG | 0.488773 | 6_3:-40396339 | Msa0951020:CDS |
| GAAGAAATTTCTCATCCCTC+TGG | 0.489177 | 6_3:-40395873 | Msa0951020:CDS |
| ACCAAACATTGAAAATGTAC+TGG | 0.490987 | 6_3:-40395850 | Msa0951020:CDS |
| ATGGGTACCGAGGATTGGGC+TGG | 0.494204 | 6_3:-40396068 | Msa0951020:CDS |
| GTGTGAATATCACCCCTGCT+AGG | 0.500091 | 6_3:-40395516 | Msa0951020:CDS |
| AAGTTGATCTATCTCCATAT+GGG | 0.500138 | 6_3:+40395944 | None:intergenic |
| GTCGTGGGAATATATTGAAT+TGG | 0.502383 | 6_3:+40397091 | None:intergenic |
| TGGTAGACTGAATTCCCATA+TGG | 0.509370 | 6_3:-40395958 | Msa0951020:CDS |
| AAAGGAAGTCTTGTTTCTTG+AGG | 0.511116 | 6_3:-40396795 | Msa0951020:CDS |
| TAAAGCATCAGCCGCCTACA+GGG | 0.517220 | 6_3:-40396450 | Msa0951020:CDS |
| ATGATGGAGTTTGATTTAGG+GGG | 0.519150 | 6_3:+40397193 | None:intergenic |
| GGGGTGAGCAGCGATGGAAG+GGG | 0.519456 | 6_3:+40397140 | None:intergenic |
| CCCATTGCCACACAATGAGT+TGG | 0.522267 | 6_3:+40396086 | None:intergenic |
| AGTGGTCAAACCTGTCTAAG+AGG | 0.522708 | 6_3:+40396758 | None:intergenic |
| CTTTCCAACTCGAATTCCAC+GGG | 0.526130 | 6_3:+40397021 | None:intergenic |
| GACAAAATTTGCTAGGAACA+CGG | 0.526762 | 6_3:+40396993 | None:intergenic |
| TTGCAAATGCCTCTACACTT+CGG | 0.528376 | 6_3:+40396591 | None:intergenic |
| CCATTGCCACACAATGAGTT+GGG | 0.530914 | 6_3:+40396087 | None:intergenic |
| AAATCCCGTGGAATTCGAGT+TGG | 0.532955 | 6_3:-40397025 | Msa0951020:CDS |
| CCCAACTCATTGTGTGGCAA+TGG | 0.536825 | 6_3:-40396087 | Msa0951020:CDS |
| GTTACCTAAAGACGAGGATG+TGG | 0.537974 | 6_3:-40395665 | Msa0951020:CDS |
| TGAATTTAGATATGGGGAAG+AGG | 0.541078 | 6_3:-40396649 | Msa0951020:intron |
| TCTGTGACATTTGTGAGAGG+TGG | 0.541786 | 6_3:-40395552 | Msa0951020:CDS |
| TTTGTGAGAGGTGGTTCCAT+GGG | 0.542875 | 6_3:-40395543 | Msa0951020:CDS |
| GAGGAAGATGGAGATGAAGA+CGG | 0.543246 | 6_3:-40395631 | Msa0951020:CDS |
| GCCAGAGAGAGAACTAATTG+AGG | 0.544336 | 6_3:-40395895 | Msa0951020:CDS |
| ACAAAATTTGCTAGGAACAC+GGG | 0.544351 | 6_3:+40396994 | None:intergenic |
| GGGTGAGCAGCGATGGAAGG+GGG | 0.548394 | 6_3:+40397141 | None:intergenic |
| ACACGTAAAACCAGATGCCT+TGG | 0.548428 | 6_3:+40396411 | None:intergenic |
| GAAGAACATTGTGAGGAAGA+TGG | 0.556234 | 6_3:-40395643 | Msa0951020:CDS |
| CCAACTCATTGTGTGGCAAT+GGG | 0.564276 | 6_3:-40396086 | Msa0951020:CDS |
| TGTGAATATCACCCCTGCTA+GGG | 0.567860 | 6_3:-40395515 | Msa0951020:CDS |
| AACATTTCCAGCCCAATCCT+CGG | 0.568680 | 6_3:+40396061 | None:intergenic |
| CGATATGCTTAGCCCTAGCA+GGG | 0.574696 | 6_3:+40395503 | None:intergenic |
| TCTTTCCAACTCGAATTCCA+CGG | 0.576672 | 6_3:+40397020 | None:intergenic |
| TGATATTCACACATTTCCCA+TGG | 0.578749 | 6_3:+40395527 | None:intergenic |
| TGAGTTGAAGACAAAGGACT+AGG | 0.578822 | 6_3:+40396026 | None:intergenic |
| ATTTGTGAGAGGTGGTTCCA+TGG | 0.579292 | 6_3:-40395544 | Msa0951020:CDS |
| GGATTTCATGTTGTTGCAAG+TGG | 0.580645 | 6_3:+40397069 | None:intergenic |
| GAATTGGTGTTGGATTTAGA+GGG | 0.594166 | 6_3:+40397107 | None:intergenic |
| ACCTGGTGACAAAATTTGCT+AGG | 0.596109 | 6_3:+40396986 | None:intergenic |
| ATTGTATGAGTTGAAGACAA+AGG | 0.596124 | 6_3:+40396020 | None:intergenic |
| AACAAGAGAGCTCGCCCTTG+AGG | 0.603261 | 6_3:-40395451 | None:intergenic |
| ATCATTATCACCAATAACAA+TGG | 0.607015 | 6_3:+40395983 | None:intergenic |
| GGCACTTGTTCGTATAGCCA+AGG | 0.607034 | 6_3:-40396428 | Msa0951020:CDS |
| ATGTTGTTGCAAGTGGTCGT+GGG | 0.613009 | 6_3:+40397076 | None:intergenic |
| GGAAGAATATGCTTTGGGAA+AGG | 0.614050 | 6_3:-40396308 | Msa0951020:intron |
| ACTCATACAATAAATTGGGA+TGG | 0.616351 | 6_3:-40396008 | Msa0951020:CDS |
| TGGATGTGCCCGAAGTGTAG+AGG | 0.628364 | 6_3:-40396600 | Msa0951020:CDS |
| GGATGTGGAAGAACATTGTG+AGG | 0.641770 | 6_3:-40395650 | Msa0951020:CDS |
| AAAGCATCAGCCGCCTACAG+GGG | 0.652248 | 6_3:-40396449 | Msa0951020:CDS |
| GTGTGTTGAATTTAGATATG+GGG | 0.656398 | 6_3:-40396655 | Msa0951020:intron |
| CGAACAAGTGCCCCTGTAGG+CGG | 0.661590 | 6_3:+40396439 | None:intergenic |
| TTGTGTGGCAATGGGTACCG+AGG | 0.665786 | 6_3:-40396078 | Msa0951020:CDS |
| ATATTGCCCAACTCATTGTG+TGG | 0.681307 | 6_3:-40396093 | Msa0951020:CDS |
| ATACGAACAAGTGCCCCTGT+AGG | 0.687555 | 6_3:+40396436 | None:intergenic |
| AGAAAATCCAGAATTCATCA+GGG | 0.689840 | 6_3:+40395572 | None:intergenic |
| GAAGACGGAGAGAACTCATG+TGG | 0.691398 | 6_3:-40395616 | Msa0951020:CDS |
| GAGAACTCATGTGGTGCATG+CGG | 0.697071 | 6_3:-40395607 | Msa0951020:CDS |
| TTTGGAGTTACCTAAAGACG+AGG | 0.697923 | 6_3:-40395671 | Msa0951020:CDS |
| GATATGCTTAGCCCTAGCAG+GGG | 0.762022 | 6_3:+40395504 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATAATTTAAAATAAAAAG+TGG | + | chr6_3:40395924-40395943 | None:intergenic | 10.0% |
| !!! | ATATTGTTTATTTTTTCACA+TGG | - | chr6_3:40395791-40395810 | Msa0951020:CDS | 15.0% |
| !!! | TAAAACATGTTTTATGATTT+TGG | - | chr6_3:40396121-40396140 | Msa0951020:intron | 15.0% |
| !!! | TAATTGATAATAATGCTATA+AGG | - | chr6_3:40396744-40396763 | Msa0951020:intron | 15.0% |
| !!! | TTTTGAATTTTCTCTTAAAT+AGG | - | chr6_3:40396966-40396985 | Msa0951020:intron | 15.0% |
| !! | TTAAATTATTCTGAGTACAA+AGG | - | chr6_3:40395933-40395952 | Msa0951020:CDS | 20.0% |
| !!! | AAGTAAACCTTTTGAATAAT+TGG | - | chr6_3:40396041-40396060 | Msa0951020:CDS | 20.0% |
| !! | TTCAACTCATACAATAAATT+GGG | - | chr6_3:40396649-40396668 | Msa0951020:intron | 20.0% |
| !!! | TAGATTTTAACACATTGATT+GGG | - | chr6_3:40396879-40396898 | Msa0951020:intron | 20.0% |
| !! | TTATGATGGAGTTTGATTTA+GGG | + | chr6_3:40395473-40395492 | None:intergenic | 25.0% |
| !! | TTTATGATGGAGTTTGATTT+AGG | + | chr6_3:40395474-40395493 | None:intergenic | 25.0% |
| !! | CAAAAACCTTTATTTCTTGT+CGG | + | chr6_3:40395822-40395841 | None:intergenic | 25.0% |
| ! | TTGTGTGTTGAATTTAGATA+TGG | - | chr6_3:40396004-40396023 | Msa0951020:CDS | 25.0% |
| ! | TGTGTGTTGAATTTAGATAT+GGG | - | chr6_3:40396005-40396024 | Msa0951020:CDS | 25.0% |
| !!! | ATGTTTTATGATTTTGGTGT+TGG | - | chr6_3:40396127-40396146 | Msa0951020:intron | 25.0% |
| ! | TGAAAAATTGGAACTTTCTA+TGG | - | chr6_3:40396302-40396321 | Msa0951020:intron | 25.0% |
| ! | GAAAAATTGGAACTTTCTAT+GGG | - | chr6_3:40396303-40396322 | Msa0951020:intron | 25.0% |
| ! | ATGGGTAATAATACTAATGT+TGG | - | chr6_3:40396321-40396340 | Msa0951020:CDS | 25.0% |
| ! | TGGGTAATAATACTAATGTT+GGG | - | chr6_3:40396322-40396341 | Msa0951020:CDS | 25.0% |
| ! | AAAGCATATTCTTCCTTTAT+AGG | + | chr6_3:40396348-40396367 | None:intergenic | 25.0% |
| ! | TATAAAGGAAGAATATGCTT+TGG | - | chr6_3:40396347-40396366 | Msa0951020:CDS | 25.0% |
| ! | ATAAAGGAAGAATATGCTTT+GGG | - | chr6_3:40396348-40396367 | Msa0951020:CDS | 25.0% |
| !! | TCTTTATTTGATGCTGAATA+AGG | - | chr6_3:40396419-40396438 | Msa0951020:CDS | 25.0% |
| ! | CTTCAACTCATACAATAAAT+TGG | - | chr6_3:40396648-40396667 | Msa0951020:intron | 25.0% |
| ! | ATCATTATCACCAATAACAA+TGG | + | chr6_3:40396681-40396700 | None:intergenic | 25.0% |
| !! | GTTATTGGTGATAATGATAT+TGG | - | chr6_3:40396683-40396702 | Msa0951020:intron | 25.0% |
| !!! | GTAGATTTTAACACATTGAT+TGG | - | chr6_3:40396878-40396897 | Msa0951020:intron | 25.0% |
| ! | CATATATCCAACAAGTATTA+AGG | + | chr6_3:40396928-40396947 | None:intergenic | 25.0% |
| !! | CTTAATACTTGTTGGATATA+TGG | - | chr6_3:40396926-40396945 | Msa0951020:intron | 25.0% |
| !! | ATTTTCTCTTAAATAGGCTT+TGG | - | chr6_3:40396972-40396991 | Msa0951020:intron | 25.0% |
| ! | TATGATGGAGTTTGATTTAG+GGG | + | chr6_3:40395472-40395491 | None:intergenic | 30.0% |
| !! | GTTTATGGATTTTGTTTGAG+GGG | + | chr6_3:40395501-40395520 | None:intergenic | 30.0% |
| !! | GGTTTATGGATTTTGTTTGA+GGG | + | chr6_3:40395502-40395521 | None:intergenic | 30.0% |
| ! | ATTTAGAGGGATGATTTTCT+GGG | + | chr6_3:40395544-40395563 | None:intergenic | 30.0% |
| GGAATATATTGAATTGGTGT+TGG | + | chr6_3:40395567-40395586 | None:intergenic | 30.0% | |
| GTGTGTTGAATTTAGATATG+GGG | - | chr6_3:40396006-40396025 | Msa0951020:CDS | 30.0% | |
| TTAACGAAGATTAACGATGT+AGG | - | chr6_3:40396184-40396203 | Msa0951020:intron | 30.0% | |
| GTGACAGCTACATAAAAATA+GGG | + | chr6_3:40396390-40396409 | None:intergenic | 30.0% | |
| TGTGACAGCTACATAAAAAT+AGG | + | chr6_3:40396391-40396410 | None:intergenic | 30.0% | |
| !! | CATATTTGTTATTATGCTGC+AGG | - | chr6_3:40396526-40396545 | Msa0951020:intron | 30.0% |
| ! | ATTGTATGAGTTGAAGACAA+AGG | + | chr6_3:40396644-40396663 | None:intergenic | 30.0% |
| ACTCATACAATAAATTGGGA+TGG | - | chr6_3:40396653-40396672 | Msa0951020:intron | 30.0% | |
| ! | AAGTTGATCTATCTCCATAT+GGG | + | chr6_3:40396720-40396739 | None:intergenic | 30.0% |
| ACCAAACATTGAAAATGTAC+TGG | - | chr6_3:40396811-40396830 | Msa0951020:CDS | 30.0% | |
| ! | TCCAGTACATTTTCAATGTT+TGG | + | chr6_3:40396815-40396834 | None:intergenic | 30.0% |
| !! | TTTTAACACATTGATTGGGA+AGG | - | chr6_3:40396883-40396902 | Msa0951020:intron | 30.0% |
| ATGACATCCTTAATACTTGT+TGG | - | chr6_3:40396918-40396937 | Msa0951020:intron | 30.0% | |
| AGAAAATCCAGAATTCATCA+GGG | + | chr6_3:40397092-40397111 | None:intergenic | 30.0% | |
| ! | ATGATGGAGTTTGATTTAGG+GGG | + | chr6_3:40395471-40395490 | None:intergenic | 35.0% |
| !! | GGGTTTATGGATTTTGTTTG+AGG | + | chr6_3:40395503-40395522 | None:intergenic | 35.0% |
| ! | TTTAGAGGGATGATTTTCTG+GGG | + | chr6_3:40395543-40395562 | None:intergenic | 35.0% |
| ! | GATTTAGAGGGATGATTTTC+TGG | + | chr6_3:40395545-40395564 | None:intergenic | 35.0% |
| !! | GAATTGGTGTTGGATTTAGA+GGG | + | chr6_3:40395557-40395576 | None:intergenic | 35.0% |
| !! | TGAATTGGTGTTGGATTTAG+AGG | + | chr6_3:40395558-40395577 | None:intergenic | 35.0% |
| GTCGTGGGAATATATTGAAT+TGG | + | chr6_3:40395573-40395592 | None:intergenic | 35.0% | |
| ! | TTTTCGTGGGGAAGAAAAAT+TGG | + | chr6_3:40395616-40395635 | None:intergenic | 35.0% |
| !! | ACAAAATTTGCTAGGAACAC+GGG | + | chr6_3:40395670-40395689 | None:intergenic | 35.0% |
| !! | GACAAAATTTGCTAGGAACA+CGG | + | chr6_3:40395671-40395690 | None:intergenic | 35.0% |
| CAAGAAACTAGAAATCAACC+TGG | + | chr6_3:40395695-40395714 | None:intergenic | 35.0% | |
| CATGCAAAAACCTGAGAAAA+AGG | - | chr6_3:40395848-40395867 | Msa0951020:CDS | 35.0% | |
| ! | AACAAGACTTCCTTTTTCTC+AGG | + | chr6_3:40395861-40395880 | None:intergenic | 35.0% |
| !! | AAAGGAAGTCTTGTTTCTTG+AGG | - | chr6_3:40395866-40395885 | Msa0951020:CDS | 35.0% |
| TGAATTTAGATATGGGGAAG+AGG | - | chr6_3:40396012-40396031 | Msa0951020:CDS | 35.0% | |
| GGCACATCCAATTATTCAAA+AGG | + | chr6_3:40396051-40396070 | None:intergenic | 35.0% | |
| CAAGATGGAAGCTGAAAAAT+TGG | - | chr6_3:40396290-40396309 | Msa0951020:intron | 35.0% | |
| TACTAATGTTGGGCCTATAA+AGG | - | chr6_3:40396332-40396351 | Msa0951020:CDS | 35.0% | |
| ! | GAAGTTGATCTATCTCCATA+TGG | + | chr6_3:40396721-40396740 | None:intergenic | 35.0% |
| ! | TTTTCAATGTTTGGTCCAGA+GGG | + | chr6_3:40396806-40396825 | None:intergenic | 35.0% |
| ! | ATTTTCAATGTTTGGTCCAG+AGG | + | chr6_3:40396807-40396826 | None:intergenic | 35.0% |
| CAGAAAATCCAGAATTCATC+AGG | + | chr6_3:40397093-40397112 | None:intergenic | 35.0% | |
| ! | TTTTCTGTGACATTTGTGAG+AGG | - | chr6_3:40397106-40397125 | Msa0951020:five_prime_UTR | 35.0% |
| TGATATTCACACATTTCCCA+TGG | + | chr6_3:40397137-40397156 | None:intergenic | 35.0% | |
| !! | CTCTTGTTGTTATTGCATGA+TGG | + | chr6_3:40397198-40397217 | None:intergenic | 35.0% |
| !! | TTAGGGGGTGGATTTGATTT+TGG | + | chr6_3:40395456-40395475 | None:intergenic | 40.0% |
| !! | TTTGAGGGGTCGTTTTATGA+TGG | + | chr6_3:40395487-40395506 | None:intergenic | 40.0% |
| GGATTTCATGTTGTTGCAAG+TGG | + | chr6_3:40395595-40395614 | None:intergenic | 40.0% | |
| !!! | TTCCACGGGATTTTTTTCGT+GGG | + | chr6_3:40395629-40395648 | None:intergenic | 40.0% |
| !!! | ATTCCACGGGATTTTTTTCG+TGG | + | chr6_3:40395630-40395649 | None:intergenic | 40.0% |
| TCTTTCCAACTCGAATTCCA+CGG | + | chr6_3:40395644-40395663 | None:intergenic | 40.0% | |
| ! | TCCTAGCAAATTTTGTCACC+AGG | - | chr6_3:40395674-40395693 | Msa0951020:CDS | 40.0% |
| ! | ACCTGGTGACAAAATTTGCT+AGG | + | chr6_3:40395678-40395697 | None:intergenic | 40.0% |
| !! | GAAGTGCCGACAAGAAATAA+AGG | - | chr6_3:40395813-40395832 | Msa0951020:CDS | 40.0% |
| GCAAAAAATGCCTCTTAGAC+AGG | - | chr6_3:40395893-40395912 | Msa0951020:CDS | 40.0% | |
| TTGCAAATGCCTCTACACTT+CGG | + | chr6_3:40396073-40396092 | None:intergenic | 40.0% | |
| TAGTGTGTGCATGTAAGTTG+TGG | - | chr6_3:40396096-40396115 | Msa0951020:CDS | 40.0% | |
| CTCAGAAATGCTTAGCAAGA+TGG | - | chr6_3:40396275-40396294 | Msa0951020:intron | 40.0% | |
| !! | GGAAGAATATGCTTTGGGAA+AGG | - | chr6_3:40396353-40396372 | Msa0951020:CDS | 40.0% |
| !! | AGAATATGCTTTGGGAAAGG+TGG | - | chr6_3:40396356-40396375 | Msa0951020:CDS | 40.0% |
| ATATTGCCCAACTCATTGTG+TGG | - | chr6_3:40396568-40396587 | Msa0951020:intron | 40.0% | |
| ! | TGAGTTGAAGACAAAGGACT+AGG | + | chr6_3:40396638-40396657 | None:intergenic | 40.0% |
| TGGTAGACTGAATTCCCATA+TGG | - | chr6_3:40396703-40396722 | Msa0951020:intron | 40.0% | |
| ! | TCCTCAATTAGTTCTCTCTC+TGG | + | chr6_3:40396770-40396789 | None:intergenic | 40.0% |
| GAAGAAATTTCTCATCCCTC+TGG | - | chr6_3:40396788-40396807 | Msa0951020:CDS | 40.0% | |
| ! | TTTGGAGTTACCTAAAGACG+AGG | - | chr6_3:40396990-40397009 | Msa0951020:CDS | 40.0% |
| GAAGAACATTGTGAGGAAGA+TGG | - | chr6_3:40397018-40397037 | Msa0951020:CDS | 40.0% | |
| AATATGGCCCTGATGAATTC+TGG | - | chr6_3:40397082-40397101 | Msa0951020:five_prime_UTR | 40.0% | |
| ! | ATGGAGTTTGATTTAGGGGG+TGG | + | chr6_3:40395468-40395487 | None:intergenic | 45.0% |
| ATGTTGTTGCAAGTGGTCGT+GGG | + | chr6_3:40395588-40395607 | None:intergenic | 45.0% | |
| !!! | TCCACGGGATTTTTTTCGTG+GGG | + | chr6_3:40395628-40395647 | None:intergenic | 45.0% |
| AAATCCCGTGGAATTCGAGT+TGG | - | chr6_3:40395636-40395655 | Msa0951020:CDS | 45.0% | |
| CTTTCCAACTCGAATTCCAC+GGG | + | chr6_3:40395643-40395662 | None:intergenic | 45.0% | |
| AGTGGTCAAACCTGTCTAAG+AGG | + | chr6_3:40395906-40395925 | None:intergenic | 45.0% | |
| TGCAAATGCCTCTACACTTC+GGG | + | chr6_3:40396072-40396091 | None:intergenic | 45.0% | |
| ACACGTAAAACCAGATGCCT+TGG | + | chr6_3:40396253-40396272 | None:intergenic | 45.0% | |
| CCATTGCCACACAATGAGTT+GGG | + | chr6_3:40396577-40396596 | None:intergenic | 45.0% | |
| CCAACTCATTGTGTGGCAAT+GGG | - | chr6_3:40396575-40396594 | Msa0951020:intron | 45.0% | |
| AACATTTCCAGCCCAATCCT+CGG | + | chr6_3:40396603-40396622 | None:intergenic | 45.0% | |
| TGGGATGGCACCATTGTTAT+TGG | - | chr6_3:40396668-40396687 | Msa0951020:intron | 45.0% | |
| GCCAGAGAGAGAACTAATTG+AGG | - | chr6_3:40396766-40396785 | Msa0951020:intron | 45.0% | |
| GTTACCTAAAGACGAGGATG+TGG | - | chr6_3:40396996-40397015 | Msa0951020:CDS | 45.0% | |
| TCTTCCACATCCTCGTCTTT+AGG | + | chr6_3:40397003-40397022 | None:intergenic | 45.0% | |
| GGATGTGGAAGAACATTGTG+AGG | - | chr6_3:40397011-40397030 | Msa0951020:CDS | 45.0% | |
| GAGGAAGATGGAGATGAAGA+CGG | - | chr6_3:40397030-40397049 | Msa0951020:CDS | 45.0% | |
| TCTGTGACATTTGTGAGAGG+TGG | - | chr6_3:40397109-40397128 | Msa0951020:five_prime_UTR | 45.0% | |
| ATTTGTGAGAGGTGGTTCCA+TGG | - | chr6_3:40397117-40397136 | Msa0951020:five_prime_UTR | 45.0% | |
| TTTGTGAGAGGTGGTTCCAT+GGG | - | chr6_3:40397118-40397137 | Msa0951020:five_prime_UTR | 45.0% | |
| TGTGAATATCACCCCTGCTA+GGG | - | chr6_3:40397146-40397165 | Msa0951020:five_prime_UTR | 45.0% | |
| CATGTTGTTGCAAGTGGTCG+TGG | + | chr6_3:40395589-40395608 | None:intergenic | 50.0% | |
| TCCCCACGAAAAAAATCCCG+TGG | - | chr6_3:40395624-40395643 | Msa0951020:CDS | 50.0% | |
| ! | TAAAGCATCAGCCGCCTACA+GGG | - | chr6_3:40396211-40396230 | Msa0951020:intron | 50.0% |
| ATACGAACAAGTGCCCCTGT+AGG | + | chr6_3:40396228-40396247 | None:intergenic | 50.0% | |
| GGCACTTGTTCGTATAGCCA+AGG | - | chr6_3:40396233-40396252 | Msa0951020:intron | 50.0% | |
| ! | GTTCGTATAGCCAAGGCATC+TGG | - | chr6_3:40396240-40396259 | Msa0951020:intron | 50.0% |
| CCCAACTCATTGTGTGGCAA+TGG | - | chr6_3:40396574-40396593 | Msa0951020:intron | 50.0% | |
| CCCATTGCCACACAATGAGT+TGG | + | chr6_3:40396578-40396597 | None:intergenic | 50.0% | |
| GAAGACGGAGAGAACTCATG+TGG | - | chr6_3:40397045-40397064 | Msa0951020:CDS | 50.0% | |
| GAGAACTCATGTGGTGCATG+CGG | - | chr6_3:40397054-40397073 | Msa0951020:CDS | 50.0% | |
| GTGTGAATATCACCCCTGCT+AGG | - | chr6_3:40397145-40397164 | Msa0951020:five_prime_UTR | 50.0% | |
| GATATGCTTAGCCCTAGCAG+GGG | + | chr6_3:40397160-40397179 | None:intergenic | 50.0% | |
| CGATATGCTTAGCCCTAGCA+GGG | + | chr6_3:40397161-40397180 | None:intergenic | 50.0% | |
| TCGATATGCTTAGCCCTAGC+AGG | + | chr6_3:40397162-40397181 | None:intergenic | 50.0% | |
| CAGCGATGGAAGGGGGTTTA+TGG | + | chr6_3:40395516-40395535 | None:intergenic | 55.0% | |
| !!! | TTTTCTGGGGTGAGCAGCGA+TGG | + | chr6_3:40395530-40395549 | None:intergenic | 55.0% |
| TGGATGTGCCCGAAGTGTAG+AGG | - | chr6_3:40396061-40396080 | Msa0951020:CDS | 55.0% | |
| ! | CTAAAGCATCAGCCGCCTAC+AGG | - | chr6_3:40396210-40396229 | Msa0951020:intron | 55.0% |
| ! | AAAGCATCAGCCGCCTACAG+GGG | - | chr6_3:40396212-40396231 | Msa0951020:intron | 55.0% |
| ! | TTGTGTGGCAATGGGTACCG+AGG | - | chr6_3:40396583-40396602 | Msa0951020:CDS | 55.0% |
| !! | TGGCAATGGGTACCGAGGAT+TGG | - | chr6_3:40396588-40396607 | Msa0951020:CDS | 55.0% |
| !! | GGCAATGGGTACCGAGGATT+GGG | - | chr6_3:40396589-40396608 | Msa0951020:CDS | 55.0% |
| GGTGCATGCGGTGAGCAATA+TGG | - | chr6_3:40397066-40397085 | Msa0951020:exon | 55.0% | |
| TGGGGTGAGCAGCGATGGAA+GGG | + | chr6_3:40395525-40395544 | None:intergenic | 60.0% | |
| CGAACAAGTGCCCCTGTAGG+CGG | + | chr6_3:40396225-40396244 | None:intergenic | 60.0% | |
| !! | ATGGGTACCGAGGATTGGGC+TGG | - | chr6_3:40396593-40396612 | Msa0951020:CDS | 60.0% |
| GGGTGAGCAGCGATGGAAGG+GGG | + | chr6_3:40395523-40395542 | None:intergenic | 65.0% | |
| GGGGTGAGCAGCGATGGAAG+GGG | + | chr6_3:40395524-40395543 | None:intergenic | 65.0% | |
| CTGGGGTGAGCAGCGATGGA+AGG | + | chr6_3:40395526-40395545 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 40395453 | 40397230 | 40395453 | ID=Msa0951020;Name=Msa0951020 |
| chr6_3 | mRNA | 40395453 | 40397230 | 40395453 | ID=Msa0951020-mRNA-1;Parent=Msa0951020;Name=Msa0951020-mRNA-1;_AED=0.07;_eAED=0.07;_QI=153|1|0.83|1|1|1|6|0|347 |
| chr6_3 | exon | 40395453 | 40395695 | 40395453 | ID=Msa0951020-mRNA-1:exon:9735;Parent=Msa0951020-mRNA-1 |
| chr6_3 | exon | 40395779 | 40396135 | 40395779 | ID=Msa0951020-mRNA-1:exon:9734;Parent=Msa0951020-mRNA-1 |
| chr6_3 | exon | 40396309 | 40396477 | 40396309 | ID=Msa0951020-mRNA-1:exon:9733;Parent=Msa0951020-mRNA-1 |
| chr6_3 | exon | 40396576 | 40396662 | 40396576 | ID=Msa0951020-mRNA-1:exon:9732;Parent=Msa0951020-mRNA-1 |
| chr6_3 | exon | 40396769 | 40396866 | 40396769 | ID=Msa0951020-mRNA-1:exon:9731;Parent=Msa0951020-mRNA-1 |
| chr6_3 | exon | 40396988 | 40397230 | 40396988 | ID=Msa0951020-mRNA-1:exon:9730;Parent=Msa0951020-mRNA-1 |
| chr6_3 | five_prime_UTR | 40397078 | 40397230 | 40397078 | ID=Msa0951020-mRNA-1:five_prime_utr;Parent=Msa0951020-mRNA-1 |
| chr6_3 | CDS | 40396988 | 40397077 | 40396988 | ID=Msa0951020-mRNA-1:cds;Parent=Msa0951020-mRNA-1 |
| chr6_3 | CDS | 40396769 | 40396866 | 40396769 | ID=Msa0951020-mRNA-1:cds;Parent=Msa0951020-mRNA-1 |
| chr6_3 | CDS | 40396576 | 40396662 | 40396576 | ID=Msa0951020-mRNA-1:cds;Parent=Msa0951020-mRNA-1 |
| chr6_3 | CDS | 40396309 | 40396477 | 40396309 | ID=Msa0951020-mRNA-1:cds;Parent=Msa0951020-mRNA-1 |
| chr6_3 | CDS | 40395779 | 40396135 | 40395779 | ID=Msa0951020-mRNA-1:cds;Parent=Msa0951020-mRNA-1 |
| chr6_3 | CDS | 40395453 | 40395695 | 40395453 | ID=Msa0951020-mRNA-1:cds;Parent=Msa0951020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
