Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951250 | sp|Q8L3W1|VRN1_ARATH | 23.708 | 329 | 198 | 9 | 15 | 294 | 6 | 330 | 3.52e-16 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951250 | A0A072UAG2 | 89.506 | 324 | 25 | 2 | 1 | 319 | 1 | 320 | 0.0 | 598 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0951250 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951250 | MtrunA17_Chr6g0467351 | 87.931 | 232 | 22 | 2 | 1 | 227 | 1 | 231 | 7.53e-148 | 415 |
| Msa0951250 | MtrunA17_Chr4g0067431 | 64.839 | 310 | 92 | 3 | 1 | 296 | 1 | 307 | 1.81e-139 | 397 |
| Msa0951250 | MtrunA17_Chr1g0163221 | 54.324 | 370 | 96 | 8 | 1 | 319 | 1 | 348 | 1.56e-119 | 348 |
| Msa0951250 | MtrunA17_Chr1g0163061 | 53.506 | 271 | 69 | 3 | 1 | 214 | 1 | 271 | 1.24e-74 | 230 |
| Msa0951250 | MtrunA17_Chr6g0467361 | 93.421 | 76 | 5 | 0 | 221 | 296 | 7 | 82 | 2.60e-48 | 157 |
| Msa0951250 | MtrunA17_Chr7g0233561 | 31.908 | 304 | 172 | 12 | 13 | 295 | 16 | 305 | 2.53e-27 | 108 |
| Msa0951250 | MtrunA17_Chr3g0131891 | 31.469 | 286 | 171 | 9 | 13 | 286 | 17 | 289 | 1.13e-26 | 107 |
| Msa0951250 | MtrunA17_Chr1g0163251 | 29.091 | 275 | 169 | 9 | 20 | 286 | 10 | 266 | 1.46e-25 | 105 |
| Msa0951250 | MtrunA17_Chr1g0163071 | 29.553 | 291 | 167 | 9 | 31 | 294 | 2 | 281 | 1.80e-25 | 103 |
| Msa0951250 | MtrunA17_Chr8g0390841 | 26.087 | 299 | 174 | 10 | 13 | 284 | 37 | 315 | 2.07e-23 | 100 |
| Msa0951250 | MtrunA17_Chr1g0163181 | 27.402 | 281 | 181 | 8 | 19 | 286 | 9 | 279 | 4.61e-22 | 95.9 |
| Msa0951250 | MtrunA17_Chr1g0163231 | 26.599 | 297 | 174 | 10 | 15 | 295 | 9 | 277 | 1.05e-21 | 93.2 |
| Msa0951250 | MtrunA17_Chr3g0103171 | 28.996 | 269 | 158 | 11 | 30 | 286 | 5 | 252 | 1.07e-21 | 92.4 |
| Msa0951250 | MtrunA17_Chr3g0103181 | 28.912 | 294 | 152 | 10 | 13 | 286 | 10 | 266 | 1.67e-21 | 92.0 |
| Msa0951250 | MtrunA17_Chr1g0163261 | 25.979 | 281 | 179 | 8 | 15 | 286 | 9 | 269 | 2.06e-21 | 92.4 |
| Msa0951250 | MtrunA17_Chr1g0163131 | 26.351 | 296 | 186 | 9 | 9 | 286 | 12 | 293 | 7.03e-21 | 90.9 |
| Msa0951250 | MtrunA17_Chr1g0163201 | 26.054 | 261 | 178 | 6 | 30 | 284 | 18 | 269 | 6.73e-20 | 89.4 |
| Msa0951250 | MtrunA17_Chr1g0171611 | 24.912 | 285 | 161 | 8 | 15 | 286 | 9 | 253 | 1.11e-19 | 87.4 |
| Msa0951250 | MtrunA17_Chr3g0103151 | 45.161 | 93 | 48 | 2 | 13 | 105 | 10 | 99 | 2.48e-19 | 83.6 |
| Msa0951250 | MtrunA17_Chr7g0233521 | 26.882 | 279 | 166 | 9 | 31 | 295 | 2 | 256 | 3.35e-19 | 85.9 |
| Msa0951250 | MtrunA17_Chr7g0233571 | 42.718 | 103 | 53 | 2 | 13 | 110 | 8 | 109 | 6.14e-19 | 84.0 |
| Msa0951250 | MtrunA17_Chr1g0163101 | 32.927 | 164 | 93 | 6 | 12 | 168 | 14 | 167 | 2.98e-18 | 81.3 |
| Msa0951250 | MtrunA17_Chr1g0208771 | 23.529 | 289 | 197 | 8 | 19 | 291 | 1 | 281 | 8.14e-18 | 83.6 |
| Msa0951250 | MtrunA17_Chr7g0233541 | 27.113 | 284 | 176 | 11 | 31 | 295 | 2 | 273 | 2.66e-17 | 80.9 |
| Msa0951250 | MtrunA17_Chr7g0233531 | 27.636 | 275 | 169 | 9 | 31 | 295 | 2 | 256 | 2.89e-16 | 77.4 |
| Msa0951250 | MtrunA17_Chr1g0154131 | 25.987 | 304 | 185 | 12 | 13 | 295 | 182 | 466 | 5.48e-15 | 75.5 |
| Msa0951250 | MtrunA17_Chr1g0163081 | 46.053 | 76 | 37 | 3 | 31 | 106 | 6 | 77 | 8.22e-15 | 70.5 |
| Msa0951250 | MtrunA17_Chr6g0476181 | 44.048 | 84 | 38 | 4 | 31 | 109 | 2 | 81 | 1.04e-14 | 70.9 |
| Msa0951250 | MtrunA17_Chr3g0103191 | 27.451 | 255 | 143 | 9 | 13 | 253 | 10 | 236 | 1.41e-14 | 72.4 |
| Msa0951250 | MtrunA17_Chr3g0077411 | 25.623 | 281 | 167 | 10 | 12 | 286 | 259 | 503 | 3.54e-14 | 73.2 |
| Msa0951250 | MtrunA17_Chr1g0163121 | 43.590 | 78 | 40 | 3 | 29 | 106 | 9 | 82 | 4.39e-14 | 68.6 |
| Msa0951250 | MtrunA17_Chr5g0419201 | 36.449 | 107 | 66 | 2 | 1 | 106 | 1 | 106 | 5.46e-14 | 69.3 |
| Msa0951250 | MtrunA17_Chr1g0162161 | 43.421 | 76 | 39 | 3 | 31 | 106 | 4 | 75 | 1.43e-13 | 67.8 |
| Msa0951250 | MtrunA17_Chr1g0163141 | 43.590 | 78 | 40 | 3 | 29 | 106 | 9 | 82 | 3.46e-13 | 67.0 |
| Msa0951250 | MtrunA17_Chr5g0429931 | 26.296 | 270 | 151 | 10 | 30 | 294 | 10 | 236 | 3.81e-13 | 68.2 |
| Msa0951250 | MtrunA17_Chr3g0077461 | 31.126 | 151 | 85 | 4 | 14 | 159 | 236 | 372 | 4.95e-13 | 69.3 |
| Msa0951250 | MtrunA17_Chr1g0163191 | 34.211 | 114 | 67 | 3 | 20 | 128 | 10 | 120 | 1.08e-12 | 65.1 |
| Msa0951250 | MtrunA17_Chr1g0154161 | 22.917 | 288 | 188 | 10 | 13 | 286 | 28 | 295 | 3.10e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951250 | AT3G18990.1 | 23.708 | 329 | 198 | 9 | 15 | 294 | 6 | 330 | 3.58e-17 | 81.3 |
| Msa0951250 | AT3G18990.2 | 23.708 | 329 | 198 | 9 | 15 | 294 | 6 | 330 | 3.99e-17 | 81.6 |
| Msa0951250 | AT1G49475.1 | 38.261 | 115 | 64 | 3 | 15 | 124 | 34 | 146 | 4.31e-13 | 67.4 |
| Msa0951250 | AT3G18960.2 | 32.353 | 102 | 63 | 2 | 15 | 111 | 30 | 130 | 8.32e-13 | 66.6 |
| Msa0951250 | AT3G18960.1 | 32.353 | 102 | 63 | 2 | 15 | 111 | 30 | 130 | 9.77e-13 | 66.6 |
| Msa0951250 | AT4G31690.1 | 30.097 | 103 | 71 | 1 | 193 | 294 | 136 | 238 | 1.63e-11 | 64.3 |
Find 42 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCACAAGTTTCTCTTAA+AGG | 0.175780 | 6_3:+41059633 | None:intergenic |
| ACTTTCATTTGTGTCATATT+TGG | 0.209359 | 6_3:+41059822 | None:intergenic |
| GCTCACAATAATTTGAAATT+TGG | 0.213375 | 6_3:-41058566 | Msa0951250:CDS |
| CTCTCTCAATGTGTGTCTTC+TGG | 0.218908 | 6_3:+41059175 | None:intergenic |
| TGCCTCCTCGCAAAACTTAT+TGG | 0.225687 | 6_3:+41059882 | None:intergenic |
| CTTCATTATCACCTGGTAAA+AGG | 0.287609 | 6_3:-41059587 | Msa0951250:CDS |
| TTCTATCTTGATCAACAAAA+AGG | 0.293775 | 6_3:+41058660 | None:intergenic |
| ACACATTGAGAGAGATCTTT+TGG | 0.323525 | 6_3:-41059166 | Msa0951250:intron |
| CATCACAAGTTTCTCTTAAA+GGG | 0.327281 | 6_3:+41059634 | None:intergenic |
| TAGAACATGGAATGCTGATT+TGG | 0.353140 | 6_3:-41058642 | Msa0951250:CDS |
| TCTAATCGACCATCTTCAAT+AGG | 0.374130 | 6_3:+41057813 | None:intergenic |
| TTTGCGTGATTCACAACTTT+TGG | 0.378903 | 6_3:-41059727 | Msa0951250:CDS |
| TGTGTCTTCACAAATTCATT+TGG | 0.382410 | 6_3:+41058713 | None:intergenic |
| AAACCAGTGATTATGATGTT+TGG | 0.387209 | 6_3:-41059788 | Msa0951250:CDS |
| TAACAAACCCAGTCACTCTA+AGG | 0.404015 | 6_3:-41059848 | Msa0951250:CDS |
| CTCTTTGATGTGATTGTACT+CGG | 0.404696 | 6_3:-41059681 | Msa0951250:intron |
| TATCCTTCAAGAAGGAAAAC+TGG | 0.409944 | 6_3:-41060286 | Msa0951250:intron |
| TTTGGAAGCCTTAGAGTGAC+TGG | 0.425843 | 6_3:+41059840 | None:intergenic |
| TGACACAAATGAAAGTTACT+TGG | 0.482529 | 6_3:-41059815 | Msa0951250:CDS |
| TGGTTCATTGAAAGTTACTA+AGG | 0.494073 | 6_3:-41059613 | Msa0951250:CDS |
| CATATGCACATGATGAAAGA+AGG | 0.522234 | 6_3:-41058692 | Msa0951250:CDS |
| ATCTCCATCACCTTGTGTGA+AGG | 0.534503 | 6_3:-41059559 | Msa0951250:CDS |
| AAACCAAACATCATAATCAC+TGG | 0.538084 | 6_3:+41059785 | None:intergenic |
| TAATAGTCATGATGATATCA+AGG | 0.538648 | 6_3:-41059271 | Msa0951250:CDS |
| AAACAATTTGCACTAACAAG+TGG | 0.561217 | 6_3:-41058605 | Msa0951250:CDS |
| GACACAAATGAAAGTTACTT+GGG | 0.564890 | 6_3:-41059814 | Msa0951250:CDS |
| TGATACTTGCCTATTGAAGA+TGG | 0.567074 | 6_3:-41057822 | Msa0951250:CDS |
| TTGTGTGAAGGTTTGTAAGA+AGG | 0.570655 | 6_3:-41059547 | Msa0951250:CDS |
| AATTTGCACTAACAAGTGGT+TGG | 0.572723 | 6_3:-41058601 | Msa0951250:CDS |
| GAAGGTGAAAATCAACCCTA+AGG | 0.579493 | 6_3:-41059529 | Msa0951250:CDS |
| CAAACCTTCACACAAGGTGA+TGG | 0.582575 | 6_3:+41059555 | None:intergenic |
| CATGCAAGTATCCTTCAAGA+AGG | 0.583757 | 6_3:-41060294 | Msa0951250:CDS |
| TTGGAAGCCTTAGAGTGACT+GGG | 0.587860 | 6_3:+41059841 | None:intergenic |
| AAGGATTGTTACTTCAAAGA+GGG | 0.588782 | 6_3:-41057845 | Msa0951250:CDS |
| CCTTTAAGAGAAACTTGTGA+TGG | 0.589265 | 6_3:-41059633 | Msa0951250:CDS |
| GAAGGATTGTTACTTCAAAG+AGG | 0.590696 | 6_3:-41057846 | Msa0951250:CDS |
| TTGTTGATCAAGATAGAACA+TGG | 0.602629 | 6_3:-41058655 | Msa0951250:CDS |
| TTCTTACAAACCTTCACACA+AGG | 0.621821 | 6_3:+41059549 | None:intergenic |
| TTTGCGAGGAGGCATTGGCA+AGG | 0.624036 | 6_3:-41059873 | Msa0951250:CDS |
| GGGTTGGCTAGAATTTGTGA+AGG | 0.624634 | 6_3:-41057864 | Msa0951250:CDS |
| GAACTTGAACATCAGAACAA+TGG | 0.632266 | 6_3:-41060339 | Msa0951250:CDS |
| AAGGATCCTTCATTATCACC+TGG | 0.639424 | 6_3:-41059594 | Msa0951250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATGAATTTAAGAATT+AGG | - | chr6_3:41057935-41057954 | Msa0951250:intron | 10.0% |
| !! | AAAATATGAATTTATGAATT+AGG | - | chr6_3:41057977-41057996 | Msa0951250:intron | 10.0% |
| !!! | ATTTTTTTGTCTTATTTTTT+AGG | - | chr6_3:41058837-41058856 | Msa0951250:intron | 10.0% |
| !!! | TTTTTTTGTCTTATTTTTTA+GGG | - | chr6_3:41058838-41058857 | Msa0951250:intron | 10.0% |
| !!! | ATAAATTACCTTTAAAATTA+GGG | + | chr6_3:41059713-41059732 | None:intergenic | 10.0% |
| !!! | AATAAATTACCTTTAAAATT+AGG | + | chr6_3:41059714-41059733 | None:intergenic | 10.0% |
| !! | TAAATTATATTGATAAGAAA+AGG | + | chr6_3:41060265-41060284 | None:intergenic | 10.0% |
| !!! | TTAGGAGTATAATAAAATAA+CGG | - | chr6_3:41057953-41057972 | Msa0951250:intron | 15.0% |
| !!! | TGATATTGATTATTTTTTCT+TGG | - | chr6_3:41058218-41058237 | Msa0951250:intron | 15.0% |
| !!! | AGCAAAATTTCATAATTTTA+AGG | - | chr6_3:41058702-41058721 | Msa0951250:CDS | 15.0% |
| !!! | TTTTTTGTCTTATTTTTTAG+GGG | - | chr6_3:41058839-41058858 | Msa0951250:intron | 15.0% |
| !! | TAAAATCAATAATTCAAAAC+AGG | - | chr6_3:41059424-41059443 | Msa0951250:intron | 15.0% |
| !! | AAAAATCATAAAATCAACAA+TGG | + | chr6_3:41059916-41059935 | None:intergenic | 15.0% |
| !!! | TTTTTAAAAGTTTCACATAA+AGG | - | chr6_3:41060101-41060120 | Msa0951250:intron | 15.0% |
| !!! | CATGAATAATTTTGAAAAAG+TGG | + | chr6_3:41057855-41057874 | None:intergenic | 20.0% |
| !!! | AATTTTAAGGATATGAACAA+TGG | - | chr6_3:41058715-41058734 | Msa0951250:CDS | 20.0% |
| !!! | ATTCACGTCTATATTTTTAA+GGG | + | chr6_3:41059176-41059195 | None:intergenic | 20.0% |
| !!! | TATTCACGTCTATATTTTTA+AGG | + | chr6_3:41059177-41059196 | None:intergenic | 20.0% |
| !! | TTTCATTATCTATTCTTTCA+TGG | - | chr6_3:41059220-41059239 | Msa0951250:CDS | 20.0% |
| !! | TTCATTATCTATTCTTTCAT+GGG | - | chr6_3:41059221-41059240 | Msa0951250:CDS | 20.0% |
| !!! | TTATTAAAGTACCTAGATTA+TGG | - | chr6_3:41059320-41059339 | Msa0951250:intron | 20.0% |
| !!! | TGAAAATTCCCTAATTTTAA+AGG | - | chr6_3:41059702-41059721 | Msa0951250:CDS | 20.0% |
| !!! | TTATGAGTCTTGTATATAAA+CGG | + | chr6_3:41059958-41059977 | None:intergenic | 20.0% |
| !! | AATTTCCTAATGTAGTTTAT+TGG | + | chr6_3:41060181-41060200 | None:intergenic | 20.0% |
| !!! | AGGAAATTCATTTTAGAAAA+TGG | - | chr6_3:41060193-41060212 | Msa0951250:intron | 20.0% |
| !! | TTTTTCCAGTTCTCAATTTT+CGG | - | chr6_3:41058126-41058145 | Msa0951250:intron | 25.0% |
| ! | ACTTTCATTTGTGTCATATT+TGG | + | chr6_3:41058346-41058365 | None:intergenic | 25.0% |
| !! | TAGATTCTTTTTGTTCCTTA+GGG | + | chr6_3:41058654-41058673 | None:intergenic | 25.0% |
| !! | TTAGATTCTTTTTGTTCCTT+AGG | + | chr6_3:41058655-41058674 | None:intergenic | 25.0% |
| !! | TATGAAATTTTGCTTGAGAT+TGG | + | chr6_3:41058696-41058715 | None:intergenic | 25.0% |
| ! | TAATAGTCATGATGATATCA+AGG | - | chr6_3:41058894-41058913 | Msa0951250:intron | 25.0% |
| ! | TAGTAATAGATTAACCCTAA+AGG | - | chr6_3:41059049-41059068 | Msa0951250:intron | 25.0% |
| ! | AGTAATAGATTAACCCTAAA+GGG | - | chr6_3:41059050-41059069 | Msa0951250:intron | 25.0% |
| !!! | TAAAATTTTTGGTCCCTTTA+GGG | + | chr6_3:41059066-41059085 | None:intergenic | 25.0% |
| !! | TAAAGGGACCAAAAATTTTA+GGG | - | chr6_3:41059066-41059085 | Msa0951250:intron | 25.0% |
| !!! | GTCTATATTCTTTAGGTTTT+TGG | + | chr6_3:41059095-41059114 | None:intergenic | 25.0% |
| ! | ATGTTTCGTCTATATTCTTT+AGG | + | chr6_3:41059102-41059121 | None:intergenic | 25.0% |
| !!! | TGATCACTGTTGAATTTTTT+AGG | - | chr6_3:41059131-41059150 | Msa0951250:intron | 25.0% |
| !!! | GATCACTGTTGAATTTTTTA+GGG | - | chr6_3:41059132-41059151 | Msa0951250:intron | 25.0% |
| !!! | ATCACTGTTGAATTTTTTAG+GGG | - | chr6_3:41059133-41059152 | Msa0951250:intron | 25.0% |
| ! | TCAATCGAATTATACCATAA+TGG | - | chr6_3:41059272-41059291 | Msa0951250:CDS | 25.0% |
| ! | CAATCGAATTATACCATAAT+GGG | - | chr6_3:41059273-41059292 | Msa0951250:CDS | 25.0% |
| ! | AATATAACAAAGTCCCATTA+TGG | + | chr6_3:41059289-41059308 | None:intergenic | 25.0% |
| ! | AGTTATGTATAGCATACTAA+TGG | - | chr6_3:41059370-41059389 | Msa0951250:intron | 25.0% |
| ! | TTCTATCTTGATCAACAAAA+AGG | + | chr6_3:41059508-41059527 | None:intergenic | 25.0% |
| !! | GCTCACAATAATTTGAAATT+TGG | - | chr6_3:41059599-41059618 | Msa0951250:CDS | 25.0% |
| !! | CAAAACTTTTGTACTCAATT+AGG | - | chr6_3:41059882-41059901 | Msa0951250:CDS | 25.0% |
| ! | AATTATATTCCAAAATCGCA+AGG | + | chr6_3:41060230-41060249 | None:intergenic | 25.0% |
| CAAAACACACAAAAGACATA+TGG | + | chr6_3:41058038-41058057 | None:intergenic | 30.0% | |
| TGACACAAATGAAAGTTACT+TGG | - | chr6_3:41058350-41058369 | Msa0951250:intron | 30.0% | |
| GACACAAATGAAAGTTACTT+GGG | - | chr6_3:41058351-41058370 | Msa0951250:intron | 30.0% | |
| AAACCAGTGATTATGATGTT+TGG | - | chr6_3:41058377-41058396 | Msa0951250:intron | 30.0% | |
| AAACCAAACATCATAATCAC+TGG | + | chr6_3:41058383-41058402 | None:intergenic | 30.0% | |
| !!! | TATGATGTTTGGTTTTGCAA+TGG | - | chr6_3:41058388-41058407 | Msa0951250:intron | 30.0% |
| CATCACAAGTTTCTCTTAAA+GGG | + | chr6_3:41058534-41058553 | None:intergenic | 30.0% | |
| TGGTTCATTGAAAGTTACTA+AGG | - | chr6_3:41058552-41058571 | Msa0951250:CDS | 30.0% | |
| TTAAGGATATGAACAATGGT+TGG | - | chr6_3:41058719-41058738 | Msa0951250:CDS | 30.0% | |
| !!! | CTAAAATTTTTGGTCCCTTT+AGG | + | chr6_3:41059067-41059086 | None:intergenic | 30.0% |
| ! | CTAAAGGGACCAAAAATTTT+AGG | - | chr6_3:41059065-41059084 | Msa0951250:intron | 30.0% |
| ! | AAAGGGACCAAAAATTTTAG+GGG | - | chr6_3:41059067-41059086 | Msa0951250:intron | 30.0% |
| !!! | TCACTGTTGAATTTTTTAGG+GGG | - | chr6_3:41059134-41059153 | Msa0951250:intron | 30.0% |
| CCAATCAAAATCCATAATCT+AGG | + | chr6_3:41059334-41059353 | None:intergenic | 30.0% | |
| !! | CCTAGATTATGGATTTTGAT+TGG | - | chr6_3:41059331-41059350 | Msa0951250:intron | 30.0% |
| TGTGTCTTCACAAATTCATT+TGG | + | chr6_3:41059455-41059474 | None:intergenic | 30.0% | |
| TTGTTGATCAAGATAGAACA+TGG | - | chr6_3:41059510-41059529 | Msa0951250:CDS | 30.0% | |
| AAACAATTTGCACTAACAAG+TGG | - | chr6_3:41059560-41059579 | Msa0951250:CDS | 30.0% | |
| ! | AACTTTTGTACTCAATTAGG+TGG | - | chr6_3:41059885-41059904 | Msa0951250:CDS | 30.0% |
| TCGATAAAAAGATGCTTGAT+AGG | + | chr6_3:41060033-41060052 | None:intergenic | 30.0% | |
| GTCTACCAATAAACTACATT+AGG | - | chr6_3:41060173-41060192 | Msa0951250:intron | 30.0% | |
| ! | AAGGATTGTTACTTCAAAGA+GGG | - | chr6_3:41060320-41060339 | Msa0951250:CDS | 30.0% |
| GAACTTGAACATCAGAACAA+TGG | - | chr6_3:41057826-41057845 | Msa0951250:CDS | 35.0% | |
| TATCCTTCAAGAAGGAAAAC+TGG | - | chr6_3:41057879-41057898 | Msa0951250:intron | 35.0% | |
| ! | TTACCAGTTTTCCTTCTTGA+AGG | + | chr6_3:41057885-41057904 | None:intergenic | 35.0% |
| ! | TTTTGCCGAAAATTGAGAAC+TGG | + | chr6_3:41058134-41058153 | None:intergenic | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | - | chr6_3:41058392-41058411 | Msa0951250:intron | 35.0% |
| ! | TTTGCGTGATTCACAACTTT+TGG | - | chr6_3:41058438-41058457 | Msa0951250:intron | 35.0% |
| CTCTTTGATGTGATTGTACT+CGG | - | chr6_3:41058484-41058503 | Msa0951250:intron | 35.0% | |
| CCATCACAAGTTTCTCTTAA+AGG | + | chr6_3:41058535-41058554 | None:intergenic | 35.0% | |
| ! | CCTTTAAGAGAAACTTGTGA+TGG | - | chr6_3:41058532-41058551 | Msa0951250:CDS | 35.0% |
| !! | CTTTTACCAGGTGATAATGA+AGG | + | chr6_3:41058580-41058599 | None:intergenic | 35.0% |
| CTTCATTATCACCTGGTAAA+AGG | - | chr6_3:41058578-41058597 | Msa0951250:CDS | 35.0% | |
| TTCTTACAAACCTTCACACA+AGG | + | chr6_3:41058619-41058638 | None:intergenic | 35.0% | |
| TTGTGTGAAGGTTTGTAAGA+AGG | - | chr6_3:41058618-41058637 | Msa0951250:CDS | 35.0% | |
| !!! | TTCGTGCTTAGCTTTTTTTG+TGG | - | chr6_3:41058862-41058881 | Msa0951250:intron | 35.0% |
| ATGCAAAAAAGTCCTTGTCA+TGG | + | chr6_3:41058963-41058982 | None:intergenic | 35.0% | |
| ! | ACACATTGAGAGAGATCTTT+TGG | - | chr6_3:41058999-41059018 | Msa0951250:intron | 35.0% |
| ! | AAGGGACCAAAAATTTTAGG+GGG | - | chr6_3:41059068-41059087 | Msa0951250:intron | 35.0% |
| ! | TTTGGTCCCCCTAAAATTTT+TGG | + | chr6_3:41059077-41059096 | None:intergenic | 35.0% |
| CATATGCACATGATGAAAGA+AGG | - | chr6_3:41059473-41059492 | Msa0951250:CDS | 35.0% | |
| ! | TAGAACATGGAATGCTGATT+TGG | - | chr6_3:41059523-41059542 | Msa0951250:CDS | 35.0% |
| AATTTGCACTAACAAGTGGT+TGG | - | chr6_3:41059564-41059583 | Msa0951250:CDS | 35.0% | |
| !!! | TGCTATTTTCTCTCTTGAAG+AGG | - | chr6_3:41059676-41059695 | Msa0951250:intron | 35.0% |
| ! | AAATTGTGACCTTGCGATTT+TGG | - | chr6_3:41060218-41060237 | Msa0951250:intron | 35.0% |
| ATTTATGTGTGAACTCTCTC+AGG | - | chr6_3:41060280-41060299 | Msa0951250:intron | 35.0% | |
| TTTATGTGTGAACTCTCTCA+GGG | - | chr6_3:41060281-41060300 | Msa0951250:intron | 35.0% | |
| ! | GAAGGATTGTTACTTCAAAG+AGG | - | chr6_3:41060319-41060338 | Msa0951250:CDS | 35.0% |
| TGATACTTGCCTATTGAAGA+TGG | - | chr6_3:41060343-41060362 | Msa0951250:CDS | 35.0% | |
| CATGCAAGTATCCTTCAAGA+AGG | - | chr6_3:41057871-41057890 | Msa0951250:intron | 40.0% | |
| ! | AAGTGCCAATAAGTTTTGCG+AGG | - | chr6_3:41058278-41058297 | Msa0951250:intron | 40.0% |
| TAACAAACCCAGTCACTCTA+AGG | - | chr6_3:41058317-41058336 | Msa0951250:intron | 40.0% | |
| GTGATTGTACTCGGTAAATG+CGG | - | chr6_3:41058493-41058512 | Msa0951250:intron | 40.0% | |
| AAGGATCCTTCATTATCACC+TGG | - | chr6_3:41058571-41058590 | Msa0951250:CDS | 40.0% | |
| !! | GGAGATTTTAGCCTTTTACC+AGG | + | chr6_3:41058592-41058611 | None:intergenic | 40.0% |
| GAAGGTGAAAATCAACCCTA+AGG | - | chr6_3:41058636-41058655 | Msa0951250:CDS | 40.0% | |
| !!! | AGCTTTTTTTGTGGTGTAGC+AGG | - | chr6_3:41058871-41058890 | Msa0951250:intron | 40.0% |
| CGAAAAATTCAGCCATGACA+AGG | - | chr6_3:41058948-41058967 | Msa0951250:intron | 40.0% | |
| ! | GCTGAAGTACTCGATTAAAG+CGG | + | chr6_3:41060011-41060030 | None:intergenic | 40.0% |
| ! | TGCCAATAAGTTTTGCGAGG+AGG | - | chr6_3:41058281-41058300 | Msa0951250:intron | 45.0% |
| TGCCTCCTCGCAAAACTTAT+TGG | + | chr6_3:41058286-41058305 | None:intergenic | 45.0% | |
| !! | TAAGTTTTGCGAGGAGGCAT+TGG | - | chr6_3:41058287-41058306 | Msa0951250:intron | 45.0% |
| TTGGAAGCCTTAGAGTGACT+GGG | + | chr6_3:41058327-41058346 | None:intergenic | 45.0% | |
| TTTGGAAGCCTTAGAGTGAC+TGG | + | chr6_3:41058328-41058347 | None:intergenic | 45.0% | |
| ATCTCCATCACCTTGTGTGA+AGG | - | chr6_3:41058606-41058625 | Msa0951250:CDS | 45.0% | |
| CAAACCTTCACACAAGGTGA+TGG | + | chr6_3:41058613-41058632 | None:intergenic | 45.0% | |
| CTCTCTCAATGTGTGTCTTC+TGG | + | chr6_3:41058993-41059012 | None:intergenic | 45.0% | |
| GTCGTACAAAGAGTCTAGAG+AGG | + | chr6_3:41059822-41059841 | None:intergenic | 45.0% | |
| !! | GGGTTGGCTAGAATTTGTGA+AGG | - | chr6_3:41060301-41060320 | Msa0951250:CDS | 45.0% |
| TGTGTGAACTCTCTCAGGGT+TGG | - | chr6_3:41060285-41060304 | Msa0951250:intron | 50.0% | |
| !! | TTTGCGAGGAGGCATTGGCA+AGG | - | chr6_3:41058292-41058311 | Msa0951250:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 41057814 | 41060373 | 41057814 | ID=Msa0951250;Name=Msa0951250 |
| chr6_3 | mRNA | 41057814 | 41060373 | 41057814 | ID=Msa0951250-mRNA-1;Parent=Msa0951250;Name=Msa0951250-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|0.6|0.5|6|0|319 |
| chr6_3 | exon | 41060287 | 41060373 | 41060287 | ID=Msa0951250-mRNA-1:exon:9820;Parent=Msa0951250-mRNA-1 |
| chr6_3 | exon | 41059682 | 41059910 | 41059682 | ID=Msa0951250-mRNA-1:exon:9819;Parent=Msa0951250-mRNA-1 |
| chr6_3 | exon | 41059451 | 41059666 | 41059451 | ID=Msa0951250-mRNA-1:exon:9818;Parent=Msa0951250-mRNA-1 |
| chr6_3 | exon | 41059167 | 41059294 | 41059167 | ID=Msa0951250-mRNA-1:exon:9817;Parent=Msa0951250-mRNA-1 |
| chr6_3 | exon | 41058514 | 41058741 | 41058514 | ID=Msa0951250-mRNA-1:exon:9816;Parent=Msa0951250-mRNA-1 |
| chr6_3 | exon | 41057814 | 41057885 | 41057814 | ID=Msa0951250-mRNA-1:exon:9815;Parent=Msa0951250-mRNA-1 |
| chr6_3 | CDS | 41060287 | 41060373 | 41060287 | ID=Msa0951250-mRNA-1:cds;Parent=Msa0951250-mRNA-1 |
| chr6_3 | CDS | 41059682 | 41059910 | 41059682 | ID=Msa0951250-mRNA-1:cds;Parent=Msa0951250-mRNA-1 |
| chr6_3 | CDS | 41059451 | 41059666 | 41059451 | ID=Msa0951250-mRNA-1:cds;Parent=Msa0951250-mRNA-1 |
| chr6_3 | CDS | 41059167 | 41059294 | 41059167 | ID=Msa0951250-mRNA-1:cds;Parent=Msa0951250-mRNA-1 |
| chr6_3 | CDS | 41058514 | 41058741 | 41058514 | ID=Msa0951250-mRNA-1:cds;Parent=Msa0951250-mRNA-1 |
| chr6_3 | CDS | 41057814 | 41057885 | 41057814 | ID=Msa0951250-mRNA-1:cds;Parent=Msa0951250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
