Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951690 | XP_013452170.2 | 82.569 | 327 | 31 | 3 | 3 | 317 | 22 | 334 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951690 | sp|Q9T072|BH025_ARATH | 39.496 | 238 | 118 | 7 | 86 | 317 | 111 | 328 | 1.71e-41 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0951690 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951690 | MtrunA17_Chr6g0468491 | 82.515 | 326 | 31 | 3 | 4 | 317 | 1 | 312 | 0.0 | 530 |
| Msa0951690 | MtrunA17_Chr6g0468461 | 74.603 | 315 | 45 | 6 | 3 | 302 | 22 | 316 | 3.94e-153 | 433 |
| Msa0951690 | MtrunA17_Chr2g0307131 | 67.456 | 338 | 82 | 3 | 3 | 317 | 22 | 354 | 6.56e-152 | 430 |
| Msa0951690 | MtrunA17_Chr2g0307141 | 64.620 | 342 | 89 | 5 | 3 | 317 | 22 | 358 | 6.16e-140 | 400 |
| Msa0951690 | MtrunA17_Chr4g0033391 | 62.654 | 324 | 85 | 6 | 3 | 317 | 23 | 319 | 5.86e-132 | 378 |
| Msa0951690 | MtrunA17_Chr4g0033291 | 60.641 | 343 | 67 | 6 | 3 | 316 | 23 | 326 | 1.55e-127 | 367 |
| Msa0951690 | MtrunA17_Chr4g0033281 | 62.840 | 331 | 79 | 7 | 3 | 317 | 22 | 324 | 2.64e-121 | 351 |
| Msa0951690 | MtrunA17_Chr4g0054581 | 55.495 | 364 | 104 | 6 | 3 | 317 | 23 | 377 | 2.44e-114 | 335 |
| Msa0951690 | MtrunA17_Chr7g0225901 | 60.339 | 295 | 58 | 5 | 4 | 294 | 1 | 240 | 7.62e-112 | 324 |
| Msa0951690 | MtrunA17_Chr4g0054621 | 53.172 | 331 | 130 | 10 | 1 | 317 | 21 | 340 | 6.05e-104 | 307 |
| Msa0951690 | MtrunA17_Chr5g0400621 | 43.925 | 321 | 147 | 9 | 6 | 317 | 36 | 332 | 1.95e-62 | 201 |
| Msa0951690 | MtrunA17_Chr4g0002801 | 41.667 | 240 | 122 | 5 | 92 | 315 | 94 | 331 | 7.35e-52 | 174 |
| Msa0951690 | MtrunA17_Chr5g0400641 | 52.500 | 160 | 68 | 3 | 145 | 300 | 1 | 156 | 3.68e-47 | 156 |
| Msa0951690 | MtrunA17_Chr2g0280161 | 45.000 | 200 | 95 | 4 | 126 | 317 | 161 | 353 | 1.87e-46 | 160 |
| Msa0951690 | MtrunA17_Chr4g0054551 | 44.444 | 171 | 91 | 2 | 140 | 309 | 153 | 320 | 1.62e-44 | 154 |
| Msa0951690 | MtrunA17_Chr5g0400661 | 35.938 | 320 | 158 | 11 | 30 | 314 | 27 | 334 | 3.51e-44 | 154 |
| Msa0951690 | MtrunA17_Chr2g0333641 | 43.137 | 204 | 107 | 5 | 112 | 309 | 102 | 302 | 4.05e-44 | 153 |
| Msa0951690 | MtrunA17_Chr4g0049331 | 42.857 | 217 | 111 | 4 | 107 | 317 | 101 | 310 | 8.34e-44 | 152 |
| Msa0951690 | MtrunA17_Chr4g0054561 | 44.444 | 171 | 91 | 3 | 140 | 309 | 153 | 320 | 4.29e-43 | 150 |
| Msa0951690 | MtrunA17_Chr4g0002781 | 36.992 | 246 | 129 | 6 | 92 | 315 | 109 | 350 | 1.80e-42 | 150 |
| Msa0951690 | MtrunA17_Chr4g0054571 | 46.939 | 196 | 89 | 5 | 132 | 316 | 140 | 331 | 1.92e-42 | 149 |
| Msa0951690 | MtrunA17_Chr2g0333621 | 42.661 | 218 | 111 | 8 | 108 | 314 | 97 | 311 | 7.21e-41 | 144 |
| Msa0951690 | MtrunA17_Chr8g0336681 | 35.270 | 241 | 133 | 5 | 97 | 315 | 97 | 336 | 4.28e-37 | 135 |
| Msa0951690 | MtrunA17_Chr7g0249811 | 37.354 | 257 | 139 | 8 | 65 | 310 | 79 | 324 | 3.43e-36 | 132 |
| Msa0951690 | MtrunA17_Chr5g0400671 | 40.230 | 174 | 101 | 2 | 137 | 310 | 149 | 319 | 3.86e-35 | 130 |
| Msa0951690 | MtrunA17_Chr2g0333611 | 35.268 | 224 | 125 | 6 | 101 | 316 | 6 | 217 | 8.05e-35 | 126 |
| Msa0951690 | MtrunA17_Chr2g0333541 | 35.317 | 252 | 143 | 7 | 71 | 313 | 27 | 267 | 1.52e-33 | 124 |
| Msa0951690 | MtrunA17_Chr4g0002851 | 34.839 | 155 | 69 | 2 | 165 | 312 | 65 | 194 | 8.28e-23 | 94.0 |
| Msa0951690 | MtrunA17_Chr4g0002831 | 33.129 | 163 | 91 | 5 | 153 | 311 | 53 | 201 | 1.00e-22 | 94.0 |
| Msa0951690 | MtrunA17_Chr7g0233441 | 37.162 | 148 | 83 | 4 | 165 | 312 | 57 | 194 | 2.30e-21 | 90.1 |
| Msa0951690 | MtrunA17_Chr8g0366751 | 33.333 | 150 | 85 | 3 | 142 | 278 | 462 | 609 | 7.50e-16 | 78.2 |
| Msa0951690 | MtrunA17_Chr1g0185621 | 29.947 | 187 | 104 | 6 | 142 | 309 | 475 | 653 | 6.90e-15 | 75.5 |
| Msa0951690 | MtrunA17_Chr8g0346161 | 30.872 | 149 | 82 | 7 | 135 | 271 | 284 | 423 | 3.98e-14 | 72.8 |
| Msa0951690 | MtrunA17_Chr7g0275821 | 29.221 | 154 | 101 | 2 | 142 | 295 | 252 | 397 | 7.65e-14 | 71.6 |
| Msa0951690 | MtrunA17_Chr5g0411341 | 30.625 | 160 | 76 | 4 | 142 | 278 | 493 | 640 | 9.60e-14 | 72.0 |
| Msa0951690 | MtrunA17_Chr8g0386921 | 40.000 | 80 | 48 | 0 | 126 | 205 | 390 | 469 | 1.56e-12 | 68.2 |
| Msa0951690 | MtrunA17_Chr8g0346151 | 30.075 | 133 | 74 | 4 | 133 | 251 | 265 | 392 | 1.81e-12 | 67.8 |
| Msa0951690 | MtrunA17_Chr8g0365711 | 23.188 | 207 | 136 | 5 | 98 | 291 | 202 | 398 | 2.13e-12 | 67.4 |
| Msa0951690 | MtrunA17_Chr3g0131691 | 24.876 | 201 | 140 | 3 | 115 | 305 | 271 | 470 | 5.85e-12 | 66.2 |
| Msa0951690 | MtrunA17_Chr7g0260841 | 50.000 | 54 | 27 | 0 | 142 | 195 | 355 | 408 | 8.62e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0951690 | AT4G37850.2 | 39.496 | 238 | 118 | 7 | 86 | 317 | 111 | 328 | 1.74e-42 | 149 |
| Msa0951690 | AT4G37850.1 | 39.496 | 238 | 118 | 7 | 86 | 317 | 111 | 328 | 1.74e-42 | 149 |
| Msa0951690 | AT2G22760.1 | 36.014 | 286 | 149 | 11 | 62 | 314 | 11 | 295 | 5.35e-42 | 147 |
| Msa0951690 | AT2G22750.2 | 44.974 | 189 | 96 | 3 | 127 | 309 | 111 | 297 | 3.49e-37 | 135 |
| Msa0951690 | AT2G22750.3 | 44.974 | 189 | 96 | 3 | 127 | 309 | 139 | 325 | 3.89e-37 | 135 |
| Msa0951690 | AT2G22750.5 | 44.974 | 189 | 96 | 3 | 127 | 309 | 135 | 321 | 4.46e-37 | 135 |
| Msa0951690 | AT2G22750.1 | 44.974 | 189 | 95 | 4 | 127 | 309 | 111 | 296 | 6.18e-36 | 132 |
| Msa0951690 | AT2G22760.2 | 35.472 | 265 | 138 | 10 | 62 | 294 | 11 | 274 | 6.28e-36 | 131 |
| Msa0951690 | AT2G22750.4 | 44.974 | 189 | 95 | 4 | 127 | 309 | 139 | 324 | 7.57e-36 | 132 |
| Msa0951690 | AT2G22770.1 | 34.167 | 240 | 131 | 6 | 91 | 312 | 87 | 317 | 8.94e-33 | 124 |
| Msa0951690 | AT5G46760.1 | 28.261 | 184 | 99 | 7 | 142 | 298 | 415 | 592 | 9.10e-17 | 81.3 |
| Msa0951690 | AT4G17880.1 | 34.014 | 147 | 80 | 5 | 142 | 276 | 416 | 557 | 9.48e-16 | 78.2 |
| Msa0951690 | AT1G32640.1 | 32.374 | 139 | 81 | 3 | 142 | 273 | 452 | 584 | 7.69e-15 | 75.5 |
| Msa0951690 | AT1G63650.3 | 29.586 | 169 | 96 | 5 | 142 | 290 | 405 | 570 | 1.22e-14 | 74.7 |
| Msa0951690 | AT1G63650.1 | 29.586 | 169 | 96 | 5 | 142 | 290 | 405 | 570 | 1.22e-14 | 74.7 |
| Msa0951690 | AT1G63650.2 | 29.586 | 169 | 96 | 5 | 142 | 290 | 405 | 570 | 1.22e-14 | 74.7 |
| Msa0951690 | AT1G01260.1 | 29.333 | 150 | 84 | 2 | 142 | 291 | 433 | 560 | 5.76e-13 | 69.7 |
| Msa0951690 | AT1G01260.2 | 29.333 | 150 | 84 | 2 | 142 | 291 | 433 | 560 | 5.76e-13 | 69.7 |
| Msa0951690 | AT1G01260.3 | 29.333 | 150 | 84 | 2 | 142 | 291 | 433 | 560 | 5.76e-13 | 69.7 |
| Msa0951690 | AT5G41315.3 | 28.108 | 185 | 104 | 6 | 131 | 290 | 436 | 616 | 9.48e-13 | 69.3 |
| Msa0951690 | AT5G41315.2 | 28.108 | 185 | 104 | 6 | 131 | 290 | 439 | 619 | 9.94e-13 | 69.3 |
| Msa0951690 | AT5G41315.1 | 28.108 | 185 | 104 | 6 | 131 | 290 | 431 | 611 | 9.97e-13 | 69.3 |
| Msa0951690 | AT2G46510.1 | 48.333 | 60 | 31 | 0 | 142 | 201 | 395 | 454 | 3.82e-12 | 67.4 |
| Msa0951690 | AT4G16430.1 | 45.902 | 61 | 33 | 0 | 142 | 202 | 320 | 380 | 3.90e-12 | 67.0 |
Find 50 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTAGTAGTGGGTGAATT+TGG | 0.102801 | 6_3:-43460829 | None:intergenic |
| ATCAAGTTATGAAACAAATT+TGG | 0.197162 | 6_3:+43460657 | Msa0951690:CDS |
| TCAGTTTCAAATTCCATCTT+TGG | 0.246525 | 6_3:+43460798 | Msa0951690:CDS |
| AATAACAGTGTCTTACCTTT+TGG | 0.250719 | 6_3:+43461440 | Msa0951690:CDS |
| AATTAGTAGTGGGTGAATTT+GGG | 0.299879 | 6_3:-43460828 | None:intergenic |
| GGGCCTTCTAGTTAAAATTA+TGG | 0.305314 | 6_3:+43461385 | Msa0951690:CDS |
| TTACTTAATGTACCTTCTTA+AGG | 0.323115 | 6_3:-43460990 | None:intergenic |
| CATCTGTATCAAGGAAATTC+AGG | 0.330296 | 6_3:-43460534 | None:intergenic |
| GAGAGAATTGATTGTGTTGT+TGG | 0.363999 | 6_3:+43461290 | Msa0951690:CDS |
| TACTAATTCCTCACAAAACT+TGG | 0.378617 | 6_3:+43460843 | Msa0951690:CDS |
| GATGGTGATGAAGAAAGTTT+TGG | 0.390876 | 6_3:-43460763 | None:intergenic |
| TTGTCATCGTTGCAGAGGCC+TGG | 0.407480 | 6_3:-43461251 | None:intergenic |
| TAGGAAAACATATGTTGATT+CGG | 0.409240 | 6_3:+43461342 | Msa0951690:CDS |
| AAACAACAATGTTTCACTTC+GGG | 0.411590 | 6_3:+43460607 | Msa0951690:CDS |
| ATCGTTGCAGAGGCCTGGTT+TGG | 0.420748 | 6_3:-43461246 | None:intergenic |
| CGACATTACTATTATTGCTC+AGG | 0.443689 | 6_3:+43461475 | Msa0951690:CDS |
| TAATGTACCTTCTTAAGGTT+AGG | 0.447983 | 6_3:-43460985 | None:intergenic |
| AAATTCAGGTTGCTTTCCTC+AGG | 0.450905 | 6_3:-43460520 | None:intergenic |
| TTTGGGATGTTGTCCAAAGA+TGG | 0.468893 | 6_3:-43460811 | None:intergenic |
| TACTGGCAGCCAACAAAACT+CGG | 0.482022 | 6_3:-43461868 | None:intergenic |
| AACTGAAAAGATGATTTAGA+TGG | 0.501895 | 6_3:-43460781 | None:intergenic |
| GGATCCAATGTCAAGAGCAC+AGG | 0.507133 | 6_3:+43461363 | Msa0951690:CDS |
| AAATTATGGTAGAGATTGAA+AGG | 0.513560 | 6_3:+43461399 | Msa0951690:CDS |
| CAAACAACAATGTTTCACTT+CGG | 0.515112 | 6_3:+43460606 | Msa0951690:CDS |
| CCGATAGTCTTGACCAAACC+AGG | 0.516025 | 6_3:+43461233 | Msa0951690:CDS |
| GGCCCCTGTGCTCTTGACAT+TGG | 0.522418 | 6_3:-43461367 | None:intergenic |
| TCTTGTTCCTAACCTTAAGA+AGG | 0.522439 | 6_3:+43460978 | Msa0951690:CDS |
| AAAAGGTCTCGTACTCATCA+TGG | 0.528225 | 6_3:+43460886 | Msa0951690:CDS |
| TCAGAACTTCATTGCTCTTG+CGG | 0.540285 | 6_3:+43460954 | Msa0951690:CDS |
| ACTCTACCACATCTGTATCA+AGG | 0.544071 | 6_3:-43460543 | None:intergenic |
| TGAATACAATTTATTTCCTG+AGG | 0.546737 | 6_3:+43460504 | Msa0951690:CDS |
| CCTGGTTTGGTCAAGACTAT+CGG | 0.562604 | 6_3:-43461233 | None:intergenic |
| TGATGAGTTACTAAGAGATG+TGG | 0.574471 | 6_3:-43460638 | None:intergenic |
| TCATGGTCAAGATCATATCA+TGG | 0.581035 | 6_3:+43460903 | Msa0951690:CDS |
| TCGAGGATAGAATCTCCAAA+AGG | 0.583129 | 6_3:-43461455 | None:intergenic |
| GAGTTTCTCTCACATGACAT+AGG | 0.592458 | 6_3:+43460562 | Msa0951690:CDS |
| AACAACAATGTTTCACTTCG+GGG | 0.595287 | 6_3:+43460608 | Msa0951690:CDS |
| TGTTGGTTTACCATTTCAAG+TGG | 0.603001 | 6_3:+43461307 | Msa0951690:CDS |
| GATCCAATGTCAAGAGCACA+GGG | 0.607017 | 6_3:+43461364 | Msa0951690:CDS |
| ACTTCAATGCTGTCATGCGT+AGG | 0.616461 | 6_3:-43461816 | None:intergenic |
| GATGAGTTACTAAGAGATGT+GGG | 0.618639 | 6_3:-43460637 | None:intergenic |
| AGGGGTTGTCATCGTTGCAG+AGG | 0.621962 | 6_3:-43461256 | None:intergenic |
| GAGCAATAATAGTAATGTCG+AGG | 0.636001 | 6_3:-43461472 | None:intergenic |
| GAATTTCCTTGATACAGATG+TGG | 0.638336 | 6_3:+43460537 | Msa0951690:CDS |
| AGGCTACAACATGAGCATCA+AGG | 0.640216 | 6_3:+43461780 | Msa0951690:CDS |
| AATTCTCTCATCACATGACG+AGG | 0.641489 | 6_3:-43461276 | None:intergenic |
| GTTACTAAGAGATGTGGGAG+TGG | 0.643033 | 6_3:-43460632 | None:intergenic |
| TTCTCTCATCACATGACGAG+GGG | 0.649118 | 6_3:-43461274 | None:intergenic |
| ATTCTCTCATCACATGACGA+GGG | 0.668233 | 6_3:-43461275 | None:intergenic |
| ATCCAATGTCAAGAGCACAG+GGG | 0.815243 | 6_3:+43461365 | Msa0951690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCACAATTTTTTAATTTT+TGG | + | chr6_3:43461544-43461563 | Msa0951690:intron | 10.0% |
| !!! | ATAAGAAATATTTTTATTCT+AGG | + | chr6_3:43461635-43461654 | Msa0951690:intron | 10.0% |
| !!! | TTTCACAATTTTTTAATTTT+TGG | + | chr6_3:43461544-43461563 | Msa0951690:intron | 10.0% |
| !!! | ATAAGAAATATTTTTATTCT+AGG | + | chr6_3:43461635-43461654 | Msa0951690:intron | 10.0% |
| !!! | TTCTTTTTATGAAATAATCT+TGG | + | chr6_3:43461051-43461070 | Msa0951690:intron | 15.0% |
| !! | ATTGTGAAAAATAAAGTTAA+TGG | - | chr6_3:43461533-43461552 | None:intergenic | 15.0% |
| !! | TATAATAATAGTAATAGTGA+TGG | - | chr6_3:43461572-43461591 | None:intergenic | 15.0% |
| !! | ATTATATTGAGCAATTATAA+TGG | - | chr6_3:43461668-43461687 | None:intergenic | 15.0% |
| !!! | ATTTTGTTGTCTTTTTATTT+TGG | + | chr6_3:43461689-43461708 | Msa0951690:intron | 15.0% |
| !! | AAGATTAATATTAAATACAG+TGG | - | chr6_3:43461734-43461753 | None:intergenic | 15.0% |
| !!! | TTCTTTTTATGAAATAATCT+TGG | + | chr6_3:43461051-43461070 | Msa0951690:intron | 15.0% |
| !! | ATTGTGAAAAATAAAGTTAA+TGG | - | chr6_3:43461533-43461552 | None:intergenic | 15.0% |
| !! | TATAATAATAGTAATAGTGA+TGG | - | chr6_3:43461572-43461591 | None:intergenic | 15.0% |
| !! | ATTATATTGAGCAATTATAA+TGG | - | chr6_3:43461668-43461687 | None:intergenic | 15.0% |
| !!! | ATTTTGTTGTCTTTTTATTT+TGG | + | chr6_3:43461689-43461708 | Msa0951690:intron | 15.0% |
| !! | AAGATTAATATTAAATACAG+TGG | - | chr6_3:43461734-43461753 | None:intergenic | 15.0% |
| !! | ATCAAGTTATGAAACAAATT+TGG | + | chr6_3:43460657-43460676 | Msa0951690:CDS | 20.0% |
| !! | TTTAAATGTAGATATAGAGA+TGG | - | chr6_3:43461507-43461526 | None:intergenic | 20.0% |
| !! | ATCAAGTTATGAAACAAATT+TGG | + | chr6_3:43460657-43460676 | Msa0951690:CDS | 20.0% |
| !! | TTTAAATGTAGATATAGAGA+TGG | - | chr6_3:43461507-43461526 | None:intergenic | 20.0% |
| ! | TGAATACAATTTATTTCCTG+AGG | + | chr6_3:43460504-43460523 | Msa0951690:CDS | 25.0% |
| !!! | ATTGTTGTTTGTTTTGTTCT+TGG | - | chr6_3:43460597-43460616 | None:intergenic | 25.0% |
| !!! | TGATTTTGATAAGCCAAATA+TGG | + | chr6_3:43460693-43460712 | Msa0951690:CDS | 25.0% |
| !!! | ATTTTTTTCAGCTCCATATT+TGG | - | chr6_3:43460709-43460728 | None:intergenic | 25.0% |
| ! | AACTGAAAAGATGATTTAGA+TGG | - | chr6_3:43460784-43460803 | None:intergenic | 25.0% |
| ! | TTACTTAATGTACCTTCTTA+AGG | - | chr6_3:43460993-43461012 | None:intergenic | 25.0% |
| !! | TAGGAAAACATATGTTGATT+CGG | + | chr6_3:43461342-43461361 | Msa0951690:CDS | 25.0% |
| !!! | CTACCATAATTTTAACTAGA+AGG | - | chr6_3:43461391-43461410 | None:intergenic | 25.0% |
| ! | AAATTATGGTAGAGATTGAA+AGG | + | chr6_3:43461399-43461418 | Msa0951690:CDS | 25.0% |
| !!! | TTTATTTTATAGTTGGGTGA+AGG | + | chr6_3:43461760-43461779 | Msa0951690:intron | 25.0% |
| ! | TGAATACAATTTATTTCCTG+AGG | + | chr6_3:43460504-43460523 | Msa0951690:CDS | 25.0% |
| !!! | ATTGTTGTTTGTTTTGTTCT+TGG | - | chr6_3:43460597-43460616 | None:intergenic | 25.0% |
| !!! | TGATTTTGATAAGCCAAATA+TGG | + | chr6_3:43460693-43460712 | Msa0951690:CDS | 25.0% |
| !!! | ATTTTTTTCAGCTCCATATT+TGG | - | chr6_3:43460709-43460728 | None:intergenic | 25.0% |
| ! | AACTGAAAAGATGATTTAGA+TGG | - | chr6_3:43460784-43460803 | None:intergenic | 25.0% |
| ! | TTACTTAATGTACCTTCTTA+AGG | - | chr6_3:43460993-43461012 | None:intergenic | 25.0% |
| !! | TAGGAAAACATATGTTGATT+CGG | + | chr6_3:43461342-43461361 | Msa0951690:CDS | 25.0% |
| !!! | CTACCATAATTTTAACTAGA+AGG | - | chr6_3:43461391-43461410 | None:intergenic | 25.0% |
| ! | AAATTATGGTAGAGATTGAA+AGG | + | chr6_3:43461399-43461418 | Msa0951690:CDS | 25.0% |
| !!! | TTTATTTTATAGTTGGGTGA+AGG | + | chr6_3:43461760-43461779 | Msa0951690:intron | 25.0% |
| CAAACAACAATGTTTCACTT+CGG | + | chr6_3:43460606-43460625 | Msa0951690:CDS | 30.0% | |
| AAACAACAATGTTTCACTTC+GGG | + | chr6_3:43460607-43460626 | Msa0951690:CDS | 30.0% | |
| TCAGTTTCAAATTCCATCTT+TGG | + | chr6_3:43460798-43460817 | Msa0951690:CDS | 30.0% | |
| !! | AATTAGTAGTGGGTGAATTT+GGG | - | chr6_3:43460831-43460850 | None:intergenic | 30.0% |
| ! | TTTTGTGAGGAATTAGTAGT+GGG | - | chr6_3:43460841-43460860 | None:intergenic | 30.0% |
| TACTAATTCCTCACAAAACT+TGG | + | chr6_3:43460843-43460862 | Msa0951690:CDS | 30.0% | |
| !! | TTTTGTTTCCAAGTTTTGTG+AGG | - | chr6_3:43460854-43460873 | None:intergenic | 30.0% |
| TAATGTACCTTCTTAAGGTT+AGG | - | chr6_3:43460988-43461007 | None:intergenic | 30.0% | |
| ! | AATAACAGTGTCTTACCTTT+TGG | + | chr6_3:43461440-43461459 | Msa0951690:CDS | 30.0% |
| CAAACAACAATGTTTCACTT+CGG | + | chr6_3:43460606-43460625 | Msa0951690:CDS | 30.0% | |
| AAACAACAATGTTTCACTTC+GGG | + | chr6_3:43460607-43460626 | Msa0951690:CDS | 30.0% | |
| TCAGTTTCAAATTCCATCTT+TGG | + | chr6_3:43460798-43460817 | Msa0951690:CDS | 30.0% | |
| !! | AATTAGTAGTGGGTGAATTT+GGG | - | chr6_3:43460831-43460850 | None:intergenic | 30.0% |
| ! | TTTTGTGAGGAATTAGTAGT+GGG | - | chr6_3:43460841-43460860 | None:intergenic | 30.0% |
| TACTAATTCCTCACAAAACT+TGG | + | chr6_3:43460843-43460862 | Msa0951690:CDS | 30.0% | |
| !! | TTTTGTTTCCAAGTTTTGTG+AGG | - | chr6_3:43460854-43460873 | None:intergenic | 30.0% |
| TAATGTACCTTCTTAAGGTT+AGG | - | chr6_3:43460988-43461007 | None:intergenic | 30.0% | |
| ! | AATAACAGTGTCTTACCTTT+TGG | + | chr6_3:43461440-43461459 | Msa0951690:CDS | 30.0% |
| CATCTGTATCAAGGAAATTC+AGG | - | chr6_3:43460537-43460556 | None:intergenic | 35.0% | |
| GAATTTCCTTGATACAGATG+TGG | + | chr6_3:43460537-43460556 | Msa0951690:CDS | 35.0% | |
| AACAACAATGTTTCACTTCG+GGG | + | chr6_3:43460608-43460627 | Msa0951690:CDS | 35.0% | |
| GATGAGTTACTAAGAGATGT+GGG | - | chr6_3:43460640-43460659 | None:intergenic | 35.0% | |
| TGATGAGTTACTAAGAGATG+TGG | - | chr6_3:43460641-43460660 | None:intergenic | 35.0% | |
| !! | GATGGTGATGAAGAAAGTTT+TGG | - | chr6_3:43460766-43460785 | None:intergenic | 35.0% |
| !! | GAATTAGTAGTGGGTGAATT+TGG | - | chr6_3:43460832-43460851 | None:intergenic | 35.0% |
| ! | GTTTTGTGAGGAATTAGTAG+TGG | - | chr6_3:43460842-43460861 | None:intergenic | 35.0% |
| TCATGGTCAAGATCATATCA+TGG | + | chr6_3:43460903-43460922 | Msa0951690:CDS | 35.0% | |
| TCTTGTTCCTAACCTTAAGA+AGG | + | chr6_3:43460978-43460997 | Msa0951690:CDS | 35.0% | |
| CCTAACAGATTGTTACACAA+TGG | - | chr6_3:43461109-43461128 | None:intergenic | 35.0% | |
| CCATTGTGTAACAATCTGTT+AGG | + | chr6_3:43461106-43461125 | Msa0951690:intron | 35.0% | |
| TTGTGTAACAATCTGTTAGG+TGG | + | chr6_3:43461109-43461128 | Msa0951690:intron | 35.0% | |
| GAGAGAATTGATTGTGTTGT+TGG | + | chr6_3:43461290-43461309 | Msa0951690:CDS | 35.0% | |
| !! | TGTTGGTTTACCATTTCAAG+TGG | + | chr6_3:43461307-43461326 | Msa0951690:CDS | 35.0% |
| ! | ACTTTTGCTTCCACTTGAAA+TGG | - | chr6_3:43461320-43461339 | None:intergenic | 35.0% |
| ! | CAAGTGGAAGCAAAAGTTTT+AGG | + | chr6_3:43461323-43461342 | Msa0951690:CDS | 35.0% |
| ! | GGGCCTTCTAGTTAAAATTA+TGG | + | chr6_3:43461385-43461404 | Msa0951690:CDS | 35.0% |
| GAGCAATAATAGTAATGTCG+AGG | - | chr6_3:43461475-43461494 | None:intergenic | 35.0% | |
| CGACATTACTATTATTGCTC+AGG | + | chr6_3:43461475-43461494 | Msa0951690:CDS | 35.0% | |
| CATCTGTATCAAGGAAATTC+AGG | - | chr6_3:43460537-43460556 | None:intergenic | 35.0% | |
| GAATTTCCTTGATACAGATG+TGG | + | chr6_3:43460537-43460556 | Msa0951690:CDS | 35.0% | |
| AACAACAATGTTTCACTTCG+GGG | + | chr6_3:43460608-43460627 | Msa0951690:CDS | 35.0% | |
| GATGAGTTACTAAGAGATGT+GGG | - | chr6_3:43460640-43460659 | None:intergenic | 35.0% | |
| TGATGAGTTACTAAGAGATG+TGG | - | chr6_3:43460641-43460660 | None:intergenic | 35.0% | |
| !! | GATGGTGATGAAGAAAGTTT+TGG | - | chr6_3:43460766-43460785 | None:intergenic | 35.0% |
| !! | GAATTAGTAGTGGGTGAATT+TGG | - | chr6_3:43460832-43460851 | None:intergenic | 35.0% |
| ! | GTTTTGTGAGGAATTAGTAG+TGG | - | chr6_3:43460842-43460861 | None:intergenic | 35.0% |
| TCATGGTCAAGATCATATCA+TGG | + | chr6_3:43460903-43460922 | Msa0951690:CDS | 35.0% | |
| TCTTGTTCCTAACCTTAAGA+AGG | + | chr6_3:43460978-43460997 | Msa0951690:CDS | 35.0% | |
| CCTAACAGATTGTTACACAA+TGG | - | chr6_3:43461109-43461128 | None:intergenic | 35.0% | |
| CCATTGTGTAACAATCTGTT+AGG | + | chr6_3:43461106-43461125 | Msa0951690:intron | 35.0% | |
| TTGTGTAACAATCTGTTAGG+TGG | + | chr6_3:43461109-43461128 | Msa0951690:intron | 35.0% | |
| GAGAGAATTGATTGTGTTGT+TGG | + | chr6_3:43461290-43461309 | Msa0951690:CDS | 35.0% | |
| !! | TGTTGGTTTACCATTTCAAG+TGG | + | chr6_3:43461307-43461326 | Msa0951690:CDS | 35.0% |
| ! | ACTTTTGCTTCCACTTGAAA+TGG | - | chr6_3:43461320-43461339 | None:intergenic | 35.0% |
| ! | CAAGTGGAAGCAAAAGTTTT+AGG | + | chr6_3:43461323-43461342 | Msa0951690:CDS | 35.0% |
| ! | GGGCCTTCTAGTTAAAATTA+TGG | + | chr6_3:43461385-43461404 | Msa0951690:CDS | 35.0% |
| GAGCAATAATAGTAATGTCG+AGG | - | chr6_3:43461475-43461494 | None:intergenic | 35.0% | |
| CGACATTACTATTATTGCTC+AGG | + | chr6_3:43461475-43461494 | Msa0951690:CDS | 35.0% | |
| !! | AAATTCAGGTTGCTTTCCTC+AGG | - | chr6_3:43460523-43460542 | None:intergenic | 40.0% |
| ACTCTACCACATCTGTATCA+AGG | - | chr6_3:43460546-43460565 | None:intergenic | 40.0% | |
| GAGTTTCTCTCACATGACAT+AGG | + | chr6_3:43460562-43460581 | Msa0951690:CDS | 40.0% | |
| ! | TTTGGGATGTTGTCCAAAGA+TGG | - | chr6_3:43460814-43460833 | None:intergenic | 40.0% |
| CAAAAACCTCAGAGAGCAAA+AGG | + | chr6_3:43460869-43460888 | Msa0951690:CDS | 40.0% | |
| AAAAGGTCTCGTACTCATCA+TGG | + | chr6_3:43460886-43460905 | Msa0951690:CDS | 40.0% | |
| TCAGAACTTCATTGCTCTTG+CGG | + | chr6_3:43460954-43460973 | Msa0951690:CDS | 40.0% | |
| ATTCTCTCATCACATGACGA+GGG | - | chr6_3:43461278-43461297 | None:intergenic | 40.0% | |
| AATTCTCTCATCACATGACG+AGG | - | chr6_3:43461279-43461298 | None:intergenic | 40.0% | |
| TCGAGGATAGAATCTCCAAA+AGG | - | chr6_3:43461458-43461477 | None:intergenic | 40.0% | |
| !! | AAATTCAGGTTGCTTTCCTC+AGG | - | chr6_3:43460523-43460542 | None:intergenic | 40.0% |
| ACTCTACCACATCTGTATCA+AGG | - | chr6_3:43460546-43460565 | None:intergenic | 40.0% | |
| GAGTTTCTCTCACATGACAT+AGG | + | chr6_3:43460562-43460581 | Msa0951690:CDS | 40.0% | |
| ! | TTTGGGATGTTGTCCAAAGA+TGG | - | chr6_3:43460814-43460833 | None:intergenic | 40.0% |
| CAAAAACCTCAGAGAGCAAA+AGG | + | chr6_3:43460869-43460888 | Msa0951690:CDS | 40.0% | |
| AAAAGGTCTCGTACTCATCA+TGG | + | chr6_3:43460886-43460905 | Msa0951690:CDS | 40.0% | |
| TCAGAACTTCATTGCTCTTG+CGG | + | chr6_3:43460954-43460973 | Msa0951690:CDS | 40.0% | |
| ATTCTCTCATCACATGACGA+GGG | - | chr6_3:43461278-43461297 | None:intergenic | 40.0% | |
| AATTCTCTCATCACATGACG+AGG | - | chr6_3:43461279-43461298 | None:intergenic | 40.0% | |
| TCGAGGATAGAATCTCCAAA+AGG | - | chr6_3:43461458-43461477 | None:intergenic | 40.0% | |
| GTTACTAAGAGATGTGGGAG+TGG | - | chr6_3:43460635-43460654 | None:intergenic | 45.0% | |
| !! | CCTGGTTTGGTCAAGACTAT+CGG | - | chr6_3:43461236-43461255 | None:intergenic | 45.0% |
| TTCTCTCATCACATGACGAG+GGG | - | chr6_3:43461277-43461296 | None:intergenic | 45.0% | |
| ! | GATCCAATGTCAAGAGCACA+GGG | + | chr6_3:43461364-43461383 | Msa0951690:CDS | 45.0% |
| ! | ATCCAATGTCAAGAGCACAG+GGG | + | chr6_3:43461365-43461384 | Msa0951690:CDS | 45.0% |
| AGGCTACAACATGAGCATCA+AGG | + | chr6_3:43461780-43461799 | Msa0951690:CDS | 45.0% | |
| ACTTCAATGCTGTCATGCGT+AGG | - | chr6_3:43461819-43461838 | None:intergenic | 45.0% | |
| !! | GAACATGAGCCGAGTTTTGT+TGG | + | chr6_3:43461859-43461878 | Msa0951690:three_prime_UTR | 45.0% |
| TACTGGCAGCCAACAAAACT+CGG | - | chr6_3:43461871-43461890 | None:intergenic | 45.0% | |
| GTTACTAAGAGATGTGGGAG+TGG | - | chr6_3:43460635-43460654 | None:intergenic | 45.0% | |
| !! | CCTGGTTTGGTCAAGACTAT+CGG | - | chr6_3:43461236-43461255 | None:intergenic | 45.0% |
| TTCTCTCATCACATGACGAG+GGG | - | chr6_3:43461277-43461296 | None:intergenic | 45.0% | |
| ! | GATCCAATGTCAAGAGCACA+GGG | + | chr6_3:43461364-43461383 | Msa0951690:CDS | 45.0% |
| ! | ATCCAATGTCAAGAGCACAG+GGG | + | chr6_3:43461365-43461384 | Msa0951690:CDS | 45.0% |
| AGGCTACAACATGAGCATCA+AGG | + | chr6_3:43461780-43461799 | Msa0951690:CDS | 45.0% | |
| ACTTCAATGCTGTCATGCGT+AGG | - | chr6_3:43461819-43461838 | None:intergenic | 45.0% | |
| !! | GAACATGAGCCGAGTTTTGT+TGG | + | chr6_3:43461859-43461878 | Msa0951690:three_prime_UTR | 45.0% |
| TACTGGCAGCCAACAAAACT+CGG | - | chr6_3:43461871-43461890 | None:intergenic | 45.0% | |
| !!! | TAATTATTTTATTTTATAGT+TGG | + | chr6_3:43461753-43461772 | Msa0951690:intron | 5.0% |
| !!! | AATTATTTTATTTTATAGTT+GGG | + | chr6_3:43461754-43461773 | Msa0951690:intron | 5.0% |
| !!! | TAATTATTTTATTTTATAGT+TGG | + | chr6_3:43461753-43461772 | Msa0951690:intron | 5.0% |
| !!! | AATTATTTTATTTTATAGTT+GGG | + | chr6_3:43461754-43461773 | Msa0951690:intron | 5.0% |
| ! | ACGAGACCTTTTGCTCTCTG+AGG | - | chr6_3:43460878-43460897 | None:intergenic | 50.0% |
| ! | CCGATAGTCTTGACCAAACC+AGG | + | chr6_3:43461233-43461252 | Msa0951690:CDS | 50.0% |
| ! | GGATCCAATGTCAAGAGCAC+AGG | + | chr6_3:43461363-43461382 | Msa0951690:CDS | 50.0% |
| ! | ACGAGACCTTTTGCTCTCTG+AGG | - | chr6_3:43460878-43460897 | None:intergenic | 50.0% |
| ! | CCGATAGTCTTGACCAAACC+AGG | + | chr6_3:43461233-43461252 | Msa0951690:CDS | 50.0% |
| ! | GGATCCAATGTCAAGAGCAC+AGG | + | chr6_3:43461363-43461382 | Msa0951690:CDS | 50.0% |
| ATCGTTGCAGAGGCCTGGTT+TGG | - | chr6_3:43461249-43461268 | None:intergenic | 55.0% | |
| TTGTCATCGTTGCAGAGGCC+TGG | - | chr6_3:43461254-43461273 | None:intergenic | 55.0% | |
| AGGGGTTGTCATCGTTGCAG+AGG | - | chr6_3:43461259-43461278 | None:intergenic | 55.0% | |
| ATCGTTGCAGAGGCCTGGTT+TGG | - | chr6_3:43461249-43461268 | None:intergenic | 55.0% | |
| TTGTCATCGTTGCAGAGGCC+TGG | - | chr6_3:43461254-43461273 | None:intergenic | 55.0% | |
| AGGGGTTGTCATCGTTGCAG+AGG | - | chr6_3:43461259-43461278 | None:intergenic | 55.0% | |
| GGCCCCTGTGCTCTTGACAT+TGG | - | chr6_3:43461370-43461389 | None:intergenic | 60.0% | |
| GGCCCCTGTGCTCTTGACAT+TGG | - | chr6_3:43461370-43461389 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 43460490 | 43461896 | 43460490 | ID=Msa0951690;Name=Msa0951690 |
| chr6_3 | mRNA | 43460490 | 43461896 | 43460490 | ID=Msa0951690-mRNA-1;Parent=Msa0951690;Name=Msa0951690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.66|1|1|1|3|50|317 |
| chr6_3 | exon | 43460490 | 43460999 | 43460490 | ID=Msa0951690-mRNA-1:exon:9991;Parent=Msa0951690-mRNA-1 |
| chr6_3 | exon | 43461128 | 43461496 | 43461128 | ID=Msa0951690-mRNA-1:exon:9992;Parent=Msa0951690-mRNA-1 |
| chr6_3 | exon | 43461772 | 43461896 | 43461772 | ID=Msa0951690-mRNA-1:exon:9993;Parent=Msa0951690-mRNA-1 |
| chr6_3 | CDS | 43460490 | 43460999 | 43460490 | ID=Msa0951690-mRNA-1:cds;Parent=Msa0951690-mRNA-1 |
| chr6_3 | CDS | 43461128 | 43461496 | 43461128 | ID=Msa0951690-mRNA-1:cds;Parent=Msa0951690-mRNA-1 |
| chr6_3 | CDS | 43461772 | 43461846 | 43461772 | ID=Msa0951690-mRNA-1:cds;Parent=Msa0951690-mRNA-1 |
| chr6_3 | three_prime_UTR | 43461847 | 43461896 | 43461847 | ID=Msa0951690-mRNA-1:three_prime_utr;Parent=Msa0951690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
