AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0952880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0952880 MtrunA17_Chr6g0470151 83.702 362 49 1 1 362 1 352 2.10e-162 467
Msa0952880 MtrunA17_Chr2g0289181 46.352 233 125 0 327 559 1 233 8.47e-67 216
Msa0952880 MtrunA17_Chr6g0470161 78.400 125 22 1 435 559 1 120 2.39e-60 195
Msa0952880 MtrunA17_Chr7g0266611 51.515 165 79 1 395 559 2 165 1.64e-37 136
Msa0952880 MtrunA17_Chr8g0366921 50.802 187 73 5 1 180 1 175 9.46e-28 114
Msa0952880 MtrunA17_Chr1g0202461 39.200 125 65 2 291 415 222 335 1.04e-24 106
Msa0952880 MtrunA17_Chr8g0348311 45.361 97 51 1 317 413 134 228 2.51e-21 95.5
Msa0952880 MtrunA17_Chr7g0248691 41.818 110 56 1 312 413 118 227 1.21e-20 93.2
Msa0952880 MtrunA17_Chr7g0270051 45.977 87 47 0 333 419 46 132 3.04e-20 90.9
Msa0952880 MtrunA17_Chr8g0387501 42.308 104 52 2 341 439 130 230 3.96e-17 81.6
Msa0952880 MtrunA17_Chr2g0293481 46.753 77 40 1 341 417 268 343 4.48e-17 84.3
Msa0952880 MtrunA17_Chr7g0238921 41.509 106 50 3 292 397 87 180 6.90e-17 82.0
Msa0952880 MtrunA17_Chr5g0401821 41.414 99 55 1 316 411 172 270 3.05e-16 79.3
Msa0952880 MtrunA17_Chr1g0184691 45.122 82 42 1 321 399 271 352 1.91e-15 78.2
Msa0952880 MtrunA17_Chr4g0042831 40.860 93 50 2 338 426 276 367 2.07e-15 78.2
Msa0952880 MtrunA17_Chr4g0071521 43.529 85 45 1 316 397 218 302 2.13e-15 77.4
Msa0952880 MtrunA17_Chr4g0053281 47.887 71 37 0 341 411 267 337 2.38e-15 77.4
Msa0952880 MtrunA17_Chr2g0319961 50.794 63 31 0 341 403 81 143 2.52e-15 76.3
Msa0952880 MtrunA17_Chr8g0379461 47.619 63 33 0 341 403 77 139 3.38e-15 75.5
Msa0952880 MtrunA17_Chr2g0284321 50.000 60 30 0 341 400 36 95 4.49e-15 74.7
Msa0952880 MtrunA17_Chr8g0387981 38.043 92 51 2 310 395 98 189 2.54e-14 74.7
Msa0952880 MtrunA17_Chr7g0218081 43.939 66 36 1 338 403 408 472 4.51e-14 75.1
Msa0952880 MtrunA17_Chr7g0218081 43.077 65 35 2 336 400 224 286 8.10e-11 64.7
Msa0952880 MtrunA17_Chr1g0147881 34.694 98 58 2 320 411 237 334 5.41e-14 73.6
Msa0952880 MtrunA17_Chr7g0228941 42.647 68 39 0 334 401 46 113 5.43e-14 68.9
Msa0952880 MtrunA17_Chr2g0293901 41.758 182 90 5 1 181 1 167 5.69e-14 71.2
Msa0952880 MtrunA17_Chr3g0139021 37.778 90 55 1 309 397 282 371 7.70e-14 73.6
Msa0952880 MtrunA17_Chr5g0418191 41.026 78 45 1 338 415 318 394 9.31e-14 73.6
Msa0952880 MtrunA17_Chr3g0136961 39.048 105 60 2 315 418 112 213 1.25e-12 68.9
Msa0952880 MtrunA17_Chr2g0302391 37.778 90 51 1 341 425 212 301 1.70e-12 69.7
Msa0952880 MtrunA17_Chr7g0249311 46.377 69 35 2 332 400 171 237 2.46e-12 69.7
Msa0952880 MtrunA17_Chr7g0249311 39.744 78 40 2 340 411 392 468 3.09e-12 69.3
Msa0952880 MtrunA17_Chr7g0266621 47.253 91 41 1 1 91 1 84 3.90e-12 67.4
Msa0952880 MtrunA17_Chr4g0074001 30.702 114 73 3 291 403 313 421 4.44e-12 68.6
Msa0952880 MtrunA17_Chr8g0368721 46.277 188 85 4 1 187 1 173 4.48e-12 67.4
Msa0952880 MtrunA17_Chr7g0263531 42.105 76 41 2 341 416 362 434 4.74e-12 68.2
Msa0952880 MtrunA17_Chr3g0129321 39.130 69 39 3 337 404 115 181 4.76e-12 65.5
Msa0952880 MtrunA17_Chr4g0051881 45.902 61 32 1 340 400 178 237 5.37e-12 67.4
Msa0952880 MtrunA17_Chr3g0079691 50.000 62 29 2 339 400 279 338 5.84e-12 68.6
Msa0952880 MtrunA17_Chr3g0079691 38.806 67 40 1 340 406 495 560 2.02e-11 67.0
Msa0952880 MtrunA17_Chr5g0443131 46.774 62 32 1 340 401 157 217 7.33e-12 66.6
Msa0952880 MtrunA17_Chr7g0243891 48.529 68 33 2 333 400 209 274 1.06e-11 67.4
Msa0952880 MtrunA17_Chr7g0249301 42.188 64 36 1 340 403 292 354 1.18e-11 66.6
Msa0952880 MtrunA17_Chr4g0001361 43.939 66 37 0 335 400 157 222 1.50e-11 65.9
Msa0952880 MtrunA17_Chr5g0445311 38.806 67 40 1 340 406 364 429 1.85e-11 66.6
Msa0952880 MtrunA17_Chr3g0101131 38.806 67 40 1 340 406 415 480 1.95e-11 66.6
Msa0952880 MtrunA17_Chr2g0288871 33.010 103 65 3 299 400 266 365 2.92e-11 66.2
Msa0952880 MtrunA17_Chr2g0333851 43.750 64 36 0 338 401 167 230 5.08e-11 64.3
Msa0952880 MtrunA17_Chr1g0194481 44.262 61 33 1 340 400 158 217 8.54e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0952880 AT5G52830.1 48.980 98 48 2 318 415 144 239 5.38e-23 100
Msa0952880 AT4G01250.1 37.121 132 81 1 284 415 74 203 9.32e-21 93.6
Msa0952880 AT4G23550.1 44.186 86 47 1 332 417 132 216 7.08e-18 85.1
Msa0952880 AT5G28650.1 41.304 92 51 1 311 399 230 321 2.88e-17 83.6
Msa0952880 AT3G04670.1 36.441 118 61 3 285 399 215 321 3.37e-17 83.6
Msa0952880 AT1G30650.1 35.333 150 93 1 294 443 175 320 4.95e-17 84.0
Msa0952880 AT5G45050.4 40.816 98 57 1 300 397 1002 1098 7.18e-17 85.1
Msa0952880 AT5G45050.1 40.816 98 57 1 300 397 1141 1237 8.56e-17 84.7
Msa0952880 AT5G45050.2 40.816 98 57 1 300 397 1113 1209 1.00e-16 84.7
Msa0952880 AT2G23320.1 43.529 85 45 1 316 397 213 297 1.22e-16 81.6
Msa0952880 AT2G34830.1 55.000 60 27 0 341 400 216 275 1.36e-16 82.8
Msa0952880 AT2G34830.2 55.000 60 27 0 341 400 225 284 1.53e-16 82.8
Msa0952880 AT4G24240.1 40.860 93 52 1 308 397 246 338 2.08e-15 78.2
Msa0952880 AT4G31550.2 38.000 100 59 1 309 405 211 310 1.01e-14 75.9
Msa0952880 AT4G31550.1 38.710 93 54 1 316 405 219 311 1.50e-14 75.5
Msa0952880 AT3G58710.2 46.970 66 35 0 341 406 71 136 2.27e-14 73.9
Msa0952880 AT3G58710.1 46.970 66 35 0 341 406 72 137 2.30e-14 73.9
Msa0952880 AT2G24570.1 39.080 87 50 1 316 399 216 302 3.01e-14 74.3
Msa0952880 AT1G29280.1 48.333 60 31 0 341 400 75 134 5.50e-14 72.8
Msa0952880 AT2G03340.1 41.558 77 44 1 338 414 413 488 9.40e-14 74.3
Msa0952880 AT2G30590.1 39.080 87 50 1 316 399 286 372 2.09e-13 72.4
Msa0952880 AT5G43290.1 41.096 73 42 1 325 397 99 170 9.31e-13 69.3
Msa0952880 AT1G80840.1 40.217 92 50 2 340 428 146 235 1.08e-12 69.3
Msa0952880 AT3G01080.1 42.857 63 35 1 338 400 304 365 1.30e-12 70.5
Msa0952880 AT3G01080.2 36.559 93 48 2 318 400 312 403 1.33e-12 70.5
Msa0952880 AT4G26640.7 41.026 78 43 3 338 414 169 244 2.26e-12 70.1
Msa0952880 AT4G26640.5 41.026 78 43 3 338 414 33 108 2.41e-12 69.3
Msa0952880 AT4G26640.6 41.026 78 43 3 338 414 33 108 2.41e-12 69.3
Msa0952880 AT4G26640.4 41.026 78 43 3 338 414 33 108 2.41e-12 69.3
Msa0952880 AT4G26640.3 41.026 78 43 3 338 414 33 108 2.41e-12 69.3
Msa0952880 AT4G26640.1 41.026 78 43 3 338 414 137 212 2.59e-12 69.7
Msa0952880 AT4G26640.2 41.026 78 43 3 338 414 209 284 2.71e-12 69.7
Msa0952880 AT2G04880.1 44.444 63 34 1 341 403 308 369 3.30e-12 69.3
Msa0952880 AT2G04880.2 44.444 63 34 1 341 403 284 345 3.43e-12 69.3
Msa0952880 AT5G45260.1 28.834 163 92 7 247 403 1129 1273 3.69e-12 70.1
Msa0952880 AT5G07100.1 46.970 66 34 1 335 400 112 176 4.45e-12 67.8
Msa0952880 AT5G07100.2 46.970 66 34 1 335 400 19 83 5.27e-12 65.9
Msa0952880 AT5G07100.4 46.970 66 34 1 335 400 19 83 5.27e-12 65.9
Msa0952880 AT5G07100.5 46.970 66 34 1 335 400 19 83 5.27e-12 65.9
Msa0952880 AT5G07100.3 46.970 66 34 1 335 400 19 83 5.27e-12 65.9
Msa0952880 AT1G13960.1 42.857 63 35 1 338 400 407 468 8.00e-12 68.2
Msa0952880 AT1G13960.2 42.857 63 35 1 338 400 254 315 8.12e-12 67.4
Msa0952880 AT2G47260.1 38.636 88 52 2 313 400 148 233 1.31e-11 66.6
Msa0952880 AT4G18170.1 35.644 101 59 2 302 397 129 228 2.22e-11 65.9
Msa0952880 AT2G37260.1 37.037 81 46 2 321 397 326 405 3.01e-11 66.2
Msa0952880 AT2G37260.3 37.037 81 46 2 321 397 246 325 3.21e-11 65.5
Msa0952880 AT2G37260.2 37.037 81 46 2 321 397 244 323 3.37e-11 65.5
Msa0952880 AT1G29860.1 43.548 62 34 1 340 401 136 196 3.74e-11 64.7
Msa0952880 AT2G25000.2 45.902 61 33 0 340 400 103 163 4.90e-11 63.5
Msa0952880 AT2G25000.4 45.902 61 33 0 340 400 103 163 4.90e-11 63.5
Msa0952880 AT2G25000.3 45.902 61 33 0 340 400 125 185 5.19e-11 63.5
Msa0952880 AT5G56270.1 39.062 64 38 1 340 403 487 549 5.26e-11 65.9
Msa0952880 AT2G21900.1 45.161 62 33 1 340 401 109 169 5.41e-11 62.8
Msa0952880 AT2G46400.1 38.710 93 50 2 310 395 69 161 5.86e-11 64.3
Msa0952880 AT4G31800.2 38.889 90 53 1 340 429 111 198 8.75e-11 62.8

Find 148 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCAGGAAACAAACTTAT+TGG 0.167476 6_3:-47973127 Msa0952880:CDS
TTTCTCTAGCAGCGGGTAAA+TGG 0.192922 6_3:+47973263 None:intergenic
TACCCGCTGTTGGAAATTTC+AGG 0.250971 6_3:-47973420 Msa0952880:CDS
AGTGGTGGTGGTTGGGATGG+GGG 0.259814 6_3:+47975418 None:intergenic
TGTGATTGATTGAGCTTTCT+TGG 0.276762 6_3:+47974852 None:intergenic
TTGAGGAGATATGACGTTAT+TGG 0.276825 6_3:+47975580 None:intergenic
TAGTGGTGGTGGTTGGGATG+GGG 0.282225 6_3:+47975417 None:intergenic
GGTGGGAGTATTGAAATTAT+TGG 0.287618 6_3:+47975154 None:intergenic
TGGTGGTCGTGGACAAAATA+TGG 0.290490 6_3:-47974587 Msa0952880:CDS
TAGTCTTTGATGACTTGTTC+TGG 0.291346 6_3:+47973446 None:intergenic
TGTTGAGTATAAATTTATTT+AGG 0.298367 6_3:+47975201 None:intergenic
TGTAATGTGGGTTGGGATAG+TGG 0.316848 6_3:+47975400 None:intergenic
ATAGTGGTGGTGGTTGGGAT+GGG 0.318096 6_3:+47975416 None:intergenic
GTGGTGGTGCAGGGGCTAAT+AGG 0.332725 6_3:+47975032 None:intergenic
GAACCCAGCTTTGAAATGTT+TGG 0.337980 6_3:+47973391 None:intergenic
TTGGGATAGTGGTGGTGGTT+GGG 0.338841 6_3:+47975411 None:intergenic
AACATTATCACTAGTGTTCA+TGG 0.339452 6_3:-47974999 Msa0952880:CDS
GATAGTGGTGGTGGTTGGGA+TGG 0.340741 6_3:+47975415 None:intergenic
CTAAAACCATCAAAGTAAAA+TGG 0.342350 6_3:+47975548 None:intergenic
TTGGTAGGGGTGGGGTTAAC+AGG 0.344695 6_3:+47975173 None:intergenic
TAGTGGTTGTTGAAGGGGTT+TGG 0.351398 6_3:+47975348 None:intergenic
GTGATTGATTGAGCTTTCTT+GGG 0.361329 6_3:+47974853 None:intergenic
GGTGGAAGGAGTAGTGAGGG+TGG 0.366407 6_3:+47975136 None:intergenic
CAAATAAGCTTTCAGAAGAT+TGG 0.368905 6_3:-47974607 Msa0952880:CDS
AGTCTTTGATGACTTGTTCT+GGG 0.370924 6_3:+47973447 None:intergenic
AGTCAAGTTGGTGGTGGTGC+AGG 0.372354 6_3:+47975022 None:intergenic
TTGGTGTTTGAGATGGAGAT+GGG 0.375368 6_3:+47975627 None:intergenic
GTTGGGATAGTGGTGGTGGT+TGG 0.384329 6_3:+47975410 None:intergenic
GGGTTTGGATAATAGTGATT+GGG 0.385706 6_3:+47975363 None:intergenic
GAATCACAAATCCTGCCTTC+AGG 0.403451 6_3:-47973142 Msa0952880:CDS
CCGGGAATAGTGGTTGTTGA+AGG 0.405815 6_3:+47975341 None:intergenic
AATTAACAACAAGGTAACTT+TGG 0.407679 6_3:-47974645 Msa0952880:CDS
ATGGAGAGAGGTGGTGGGAT+TGG 0.408785 6_3:+47975442 None:intergenic
AATTACCCAACACCAGATCT+AGG 0.412137 6_3:-47974824 Msa0952880:CDS
TGAAATTATTGGTAGGGGTG+GGG 0.414985 6_3:+47975165 None:intergenic
CCTTCAACAACCACTATTCC+CGG 0.416292 6_3:-47975341 Msa0952880:CDS
GTGATTCACCGGAGTAAACC+TGG 0.417652 6_3:+47973158 None:intergenic
CAAAACATAATTCAAGAATC+AGG 0.420705 6_3:-47974773 Msa0952880:intron
CAACAAGAAATGCAATCAAA+TGG 0.425635 6_3:-47975230 Msa0952880:CDS
AACACTTGATTGTTATTGTT+TGG 0.427124 6_3:+47974915 None:intergenic
TTCTCTAGCAGCGGGTAAAT+GGG 0.428823 6_3:+47973264 None:intergenic
AAGGAACGGGGTTATTGTCT+TGG 0.430686 6_3:+47975519 None:intergenic
TCCAATGGACATTGACGATT+GGG 0.439428 6_3:-47975717 None:intergenic
GTCAAGTTGGTGGTGGTGCA+GGG 0.440160 6_3:+47975023 None:intergenic
CACAACAAAAGTGTCCTCTT+TGG 0.441667 6_3:+47973534 None:intergenic
GCAGGTAAATGGAACTCTAT+TGG 0.442204 6_3:-47973478 Msa0952880:CDS
ATTCCCGGCCACATAACATT+TGG 0.443207 6_3:-47975326 Msa0952880:CDS
CTAAGTTCAGTTTCTGAATG+AGG 0.443490 6_3:+47973292 None:intergenic
TTGAAATTATTGGTAGGGGT+GGG 0.444762 6_3:+47975164 None:intergenic
GTTACCAAACATTTCAAAGC+TGG 0.448001 6_3:-47973395 Msa0952880:CDS
AGGAACGGGGTTATTGTCTT+GGG 0.448203 6_3:+47975520 None:intergenic
CGGGAATAGTGGTTGTTGAA+GGG 0.449477 6_3:+47975342 None:intergenic
ACTTGAATATTCCTGCTCTC+TGG 0.454557 6_3:+47973337 None:intergenic
GTTGGTGTTTGAGATGGAGA+TGG 0.454612 6_3:+47975626 None:intergenic
GTCATGGCGGTAATTCTAGT+AGG 0.454681 6_3:+47975113 None:intergenic
GACGTTATTGGTGGTGGAGG+TGG 0.458710 6_3:+47975592 None:intergenic
TGATTGTTGTAATGTGGGTT+GGG 0.462715 6_3:+47975393 None:intergenic
AGTGATAATGTTAGTCAAGT+TGG 0.462717 6_3:+47975010 None:intergenic
GGGGTTTGGATAATAGTGAT+TGG 0.471326 6_3:+47975362 None:intergenic
ATTAGGTAAAATCCTAGATC+TGG 0.473232 6_3:+47974812 None:intergenic
GAGGTGGCGGTGACAGTGGT+TGG 0.473849 6_3:+47975608 None:intergenic
TAAGTTTGTTTCCTGAAGGC+AGG 0.474115 6_3:+47973131 None:intergenic
GGAGTATTGAAATTATTGGT+AGG 0.476280 6_3:+47975158 None:intergenic
CTCCAATGGACATTGACGAT+TGG 0.476413 6_3:-47975718 None:intergenic
TCTGACATATCAGTCATGTT+TGG 0.477660 6_3:+47973073 None:intergenic
ACCTGGGCATTGCTACTCAT+TGG 0.480044 6_3:+47973175 None:intergenic
ATAGAGTTCCATTTACCTGC+TGG 0.487185 6_3:+47973481 None:intergenic
GTGGGTTGGGATAGTGGTGG+TGG 0.487824 6_3:+47975406 None:intergenic
TGAAGTGATTGTTGTAATGT+GGG 0.489359 6_3:+47975388 None:intergenic
GAGTATTGAAATTATTGGTA+GGG 0.491396 6_3:+47975159 None:intergenic
TGAGGGATTTCTGATTGACT+AGG 0.496461 6_3:+47973310 None:intergenic
GTTAGCGAAGGCGTTGGTAG+TGG 0.498129 6_3:+47975091 None:intergenic
ATGAAGTGATTGTTGTAATG+TGG 0.498474 6_3:+47975387 None:intergenic
AGATATGACGTTATTGGTGG+TGG 0.499087 6_3:+47975586 None:intergenic
CTAATAGGTGCAGTGGTGGT+CGG 0.503498 6_3:+47975047 None:intergenic
AACAAGAAATGCAATCAAAT+GGG 0.503558 6_3:-47975229 Msa0952880:CDS
TTACCAAACATTTCAAAGCT+GGG 0.504927 6_3:-47973394 Msa0952880:CDS
TAAGTTCAGTTTCTGAATGA+GGG 0.506377 6_3:+47973293 None:intergenic
TGTTATGTGGCCGGGAATAG+TGG 0.508241 6_3:+47975331 None:intergenic
GGGAATAGTGGTTGTTGAAG+GGG 0.513196 6_3:+47975343 None:intergenic
GTTATTGGTGGTGGAGGTGG+CGG 0.516325 6_3:+47975595 None:intergenic
GATTCAATTTCTCTAGCAGC+GGG 0.517766 6_3:+47973256 None:intergenic
GTGATTGTTGTAATGTGGGT+TGG 0.519681 6_3:+47975392 None:intergenic
TCATGGCGGTAATTCTAGTA+GGG 0.520929 6_3:+47975114 None:intergenic
AGTATTGAAATTATTGGTAG+GGG 0.523845 6_3:+47975160 None:intergenic
AAAATCCTAGATCTGGTGTT+GGG 0.524682 6_3:+47974819 None:intergenic
AAGACTAGATTACCCGCTGT+TGG 0.528458 6_3:-47973430 Msa0952880:CDS
ACAGTGGTTGGTGTTTGAGA+TGG 0.528977 6_3:+47975620 None:intergenic
GAGTAATGCATAATCTGAAA+TGG 0.529216 6_3:+47974959 None:intergenic
TAGGGGTGGAAGGAGTAGTG+AGG 0.529334 6_3:+47975132 None:intergenic
ATTGAAATTATTGGTAGGGG+TGG 0.533722 6_3:+47975163 None:intergenic
GTACCAAATGTTATGTGGCC+GGG 0.534649 6_3:+47975323 None:intergenic
AGGAGATATGACGTTATTGG+TGG 0.536868 6_3:+47975583 None:intergenic
TCCCAATCGTCAATGTCCAT+TGG 0.539210 6_3:+47975716 None:intergenic
GAAGGCGTTGGTAGTGGTCA+TGG 0.541151 6_3:+47975097 None:intergenic
CCAATAAGTTTGTTTCCTGA+AGG 0.543295 6_3:+47973127 None:intergenic
GTGGAAGGAGTAGTGAGGGT+GGG 0.544821 6_3:+47975137 None:intergenic
GAGGGATTTCTGATTGACTA+GGG 0.547273 6_3:+47973311 None:intergenic
AGGCAGGATTTGTGATTCAC+CGG 0.548075 6_3:+47973147 None:intergenic
TGGTGTTTGAGATGGAGATG+GGG 0.548223 6_3:+47975628 None:intergenic
GGTGGAGGTGGCGGTGACAG+TGG 0.548306 6_3:+47975604 None:intergenic
GGTTTGGATAATAGTGATTG+GGG 0.549958 6_3:+47975364 None:intergenic
AAACCATCAAAGTAAAATGG+TGG 0.550726 6_3:+47975551 None:intergenic
ATCACTAACACTAGTGCTCA+TGG 0.555133 6_3:-47975299 Msa0952880:CDS
ATAAGCTTTCAGAAGATTGG+TGG 0.556521 6_3:-47974604 Msa0952880:CDS
AGGGGTGGAAGGAGTAGTGA+GGG 0.559730 6_3:+47975133 None:intergenic
GTAATTCTAGTAGGGGTGGA+AGG 0.560785 6_3:+47975122 None:intergenic
TCAAGTTGGTGGTGGTGCAG+GGG 0.561949 6_3:+47975024 None:intergenic
TGATTGATTGAGCTTTCTTG+GGG 0.561989 6_3:+47974854 None:intergenic
TAAAATCCTAGATCTGGTGT+TGG 0.562048 6_3:+47974818 None:intergenic
TATGACGTTATTGGTGGTGG+AGG 0.562705 6_3:+47975589 None:intergenic
GCCAATGAGTAGCAATGCCC+AGG 0.566515 6_3:-47973176 Msa0952880:CDS
AAAAGAGGCGGGGTTAGTAA+AGG 0.569673 6_3:+47975658 None:intergenic
GGGGCATGGAGAGAGGTGGT+GGG 0.569845 6_3:+47975437 None:intergenic
CGGGGTTATTGTCTTGGGCA+AGG 0.571092 6_3:+47975525 None:intergenic
TTTCAGAAGATTGGTGGTCG+TGG 0.572428 6_3:-47974598 Msa0952880:CDS
TGTACCAAATGTTATGTGGC+CGG 0.574015 6_3:+47975322 None:intergenic
AGCAATGCCCAGGTTTACTC+CGG 0.575866 6_3:-47973166 Msa0952880:CDS
GCAGGGGCTAATAGGTGCAG+TGG 0.576808 6_3:+47975040 None:intergenic
ATGTGAAAAGACCTTGGATG+TGG 0.577521 6_3:+47974542 None:intergenic
AGCTTTGTTGCTATTGACAA+AGG 0.577889 6_3:+47975685 None:intergenic
GGCGGTAATTCTAGTAGGGG+TGG 0.578698 6_3:+47975118 None:intergenic
TGAAATGGTAGGATATTGAC+TGG 0.578765 6_3:+47974974 None:intergenic
AATTCGATCATCCAGAGAGC+AGG 0.579343 6_3:-47973348 Msa0952880:CDS
AACCATCAAAGTAAAATGGT+GGG 0.584704 6_3:+47975552 None:intergenic
AATGCATAATCTGAAATGGT+AGG 0.587445 6_3:+47974963 None:intergenic
TGTGGGGTTAGCGAAGGCGT+TGG 0.595580 6_3:+47975085 None:intergenic
TGATTGTACCAAATGTTATG+TGG 0.596955 6_3:+47975318 None:intergenic
GACCTGAAATTTCCAACAGC+GGG 0.597205 6_3:+47973418 None:intergenic
AAAGCTTATTTGTTCTCACA+TGG 0.598586 6_3:+47974618 None:intergenic
AGTTGTTGTGGGGTTAGCGA+AGG 0.605077 6_3:+47975079 None:intergenic
TGATTCAATTTCTCTAGCAG+CGG 0.608307 6_3:+47973255 None:intergenic
CTTTGATGACTTGTTCTGGG+AGG 0.611922 6_3:+47973450 None:intergenic
TGATTCACCGGAGTAAACCT+GGG 0.612077 6_3:+47973159 None:intergenic
GGGGCTAATAGGTGCAGTGG+TGG 0.614826 6_3:+47975043 None:intergenic
GAAATAGAAAACCATCATTG+AGG 0.620026 6_3:+47973026 None:intergenic
TTAGCGGGTCCCCACATCCA+AGG 0.623038 6_3:-47974553 Msa0952880:intron
TGTGAAAAGACCTTGGATGT+GGG 0.630725 6_3:+47974543 None:intergenic
GATAATGTTAGTCAAGTTGG+TGG 0.636625 6_3:+47975013 None:intergenic
GTGAAAAGACCTTGGATGTG+GGG 0.637723 6_3:+47974544 None:intergenic
AATGTTAGTCAAGTTGGTGG+TGG 0.642962 6_3:+47975016 None:intergenic
ATAGAAAACCATCATTGAGG+TGG 0.645904 6_3:+47973029 None:intergenic
CATGGCGGTAATTCTAGTAG+GGG 0.672579 6_3:+47975115 None:intergenic
AAACATGACTGATATGTCAG+AGG 0.673297 6_3:-47973071 Msa0952880:CDS
AATGTGGGTTGGGATAGTGG+TGG 0.673840 6_3:+47975403 None:intergenic
GATTGATTGAGCTTTCTTGG+GGG 0.688353 6_3:+47974855 None:intergenic
CGACCTGAAATTTCCAACAG+CGG 0.699786 6_3:+47973417 None:intergenic
GGCGTTGGTAGTGGTCATGG+CGG 0.717922 6_3:+47975100 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATAAATAAATTTTAT+GGG + chr6_3:47974626-47974645 None:intergenic 0.0%
!!! TTTAAAATAAATAAATTTTA+TGG + chr6_3:47974627-47974646 None:intergenic 0.0%
!!! TATCAAAATTAATGTATTTT+TGG - chr6_3:47974483-47974502 Msa0952880:intron 10.0%
!! ACTAAAAATATATGTTTATT+GGG + chr6_3:47975040-47975059 None:intergenic 10.0%
!! TACTAAAAATATATGTTTAT+TGG + chr6_3:47975041-47975060 None:intergenic 10.0%
!! TGTTGAGTATAAATTTATTT+AGG + chr6_3:47973536-47973555 None:intergenic 15.0%
!!! ATATGTAAAAGTTAGATTTT+TGG + chr6_3:47974218-47974237 None:intergenic 15.0%
!!! ATTTTAGTAGATCATAAATA+AGG + chr6_3:47974676-47974695 None:intergenic 15.0%
!! AAATTTATTCATAGGATAAT+TGG + chr6_3:47974722-47974741 None:intergenic 15.0%
!! AAAAGAAAGATGTATTTATA+TGG - chr6_3:47974815-47974834 Msa0952880:CDS 15.0%
!!! CTAATGTTTAAATATGTTTT+TGG + chr6_3:47974842-47974861 None:intergenic 15.0%
!!! TGAAATCATTTTGTTTAAGT+GGG + chr6_3:47973245-47973264 None:intergenic 20.0%
!!! ATGAAATCATTTTGTTTAAG+TGG + chr6_3:47973246-47973265 None:intergenic 20.0%
!! TTACAGAAAAATTAACAACA+AGG - chr6_3:47974080-47974099 Msa0952880:intron 20.0%
!!! TTTTTGGTTTAAGTACAAAA+TGG - chr6_3:47974499-47974518 Msa0952880:intron 20.0%
!!! TAACAATCAAAACTTTTACA+TGG + chr6_3:47974544-47974563 None:intergenic 20.0%
!! TTCACTTTGTATTTATGATA+AGG - chr6_3:47974865-47974884 Msa0952880:CDS 20.0%
!! TCACTTTGTATTTATGATAA+GGG - chr6_3:47974866-47974885 Msa0952880:CDS 20.0%
!! AAATTAACCTTATCAAGTAT+TGG + chr6_3:47974900-47974919 None:intergenic 20.0%
! CTAAAACCATCAAAGTAAAA+TGG + chr6_3:47973189-47973208 None:intergenic 25.0%
!!! GAAATCATTTTGTTTAAGTG+GGG + chr6_3:47973244-47973263 None:intergenic 25.0%
!!! AAGTGTTGAACAATCAAAAA+AGG + chr6_3:47973478-47973497 None:intergenic 25.0%
! AACAAGAAATGCAATCAAAT+GGG - chr6_3:47973505-47973524 Msa0952880:CDS 25.0%
!! AGTATTGAAATTATTGGTAG+GGG + chr6_3:47973577-47973596 None:intergenic 25.0%
!!! GAGTATTGAAATTATTGGTA+GGG + chr6_3:47973578-47973597 None:intergenic 25.0%
!! AACACTTGATTGTTATTGTT+TGG + chr6_3:47973822-47973841 None:intergenic 25.0%
! CAAAACATAATTCAAGAATC+AGG - chr6_3:47973961-47973980 Msa0952880:intron 25.0%
! AATTAACAACAAGGTAACTT+TGG - chr6_3:47974089-47974108 Msa0952880:intron 25.0%
! TATGGACAAAAAAACATTAG+CGG - chr6_3:47974165-47974184 Msa0952880:intron 25.0%
! TTAATACAAACATGATACCT+AGG - chr6_3:47974273-47974292 Msa0952880:intron 25.0%
! TAATACAAACATGATACCTA+GGG - chr6_3:47974274-47974293 Msa0952880:intron 25.0%
! CAACAAGTAGAAAAAACAAA+AGG + chr6_3:47974591-47974610 None:intergenic 25.0%
!!! TTTCTACTTGTTGTTTGTTT+TGG - chr6_3:47974598-47974617 Msa0952880:CDS 25.0%
! TCTCTGCAAAATTTATTCAT+AGG + chr6_3:47974730-47974749 None:intergenic 25.0%
! ACAAATATATCACTCATTTC+AGG - chr6_3:47974978-47974997 Msa0952880:CDS 25.0%
! ATTAAAGTGATACGATTTAG+AGG - chr6_3:47975074-47975093 Msa0952880:CDS 25.0%
!! CAATCAATGAATGATTTTTC+AGG - chr6_3:47975113-47975132 Msa0952880:CDS 25.0%
!! GAAAACAAGTTTTCAACATT+AGG + chr6_3:47975508-47975527 None:intergenic 25.0%
!! TAAAATGGTGGGATATTTTG+AGG + chr6_3:47973174-47973193 None:intergenic 30.0%
AACCATCAAAGTAAAATGGT+GGG + chr6_3:47973185-47973204 None:intergenic 30.0%
AAACCATCAAAGTAAAATGG+TGG + chr6_3:47973186-47973205 None:intergenic 30.0%
!! TTTTGTTTAAGTGGGGAAAA+AGG + chr6_3:47973237-47973256 None:intergenic 30.0%
TGAAGTGATTGTTGTAATGT+GGG + chr6_3:47973349-47973368 None:intergenic 30.0%
ATGAAGTGATTGTTGTAATG+TGG + chr6_3:47973350-47973369 None:intergenic 30.0%
TGATTGTACCAAATGTTATG+TGG + chr6_3:47973419-47973438 None:intergenic 30.0%
GTTGAACAATCAAAAAAGGT+GGG + chr6_3:47973474-47973493 None:intergenic 30.0%
TGTTGAACAATCAAAAAAGG+TGG + chr6_3:47973475-47973494 None:intergenic 30.0%
CAACAAGAAATGCAATCAAA+TGG - chr6_3:47973504-47973523 Msa0952880:CDS 30.0%
!! GGAGTATTGAAATTATTGGT+AGG + chr6_3:47973579-47973598 None:intergenic 30.0%
! AGTGATAATGTTAGTCAAGT+TGG + chr6_3:47973727-47973746 None:intergenic 30.0%
AACATTATCACTAGTGTTCA+TGG - chr6_3:47973735-47973754 Msa0952880:intron 30.0%
! AATGCATAATCTGAAATGGT+AGG + chr6_3:47973774-47973793 None:intergenic 30.0%
GAGTAATGCATAATCTGAAA+TGG + chr6_3:47973778-47973797 None:intergenic 30.0%
ATTAGGTAAAATCCTAGATC+TGG + chr6_3:47973925-47973944 None:intergenic 30.0%
! GCTTTTTGTGAATCTGAATT+AGG + chr6_3:47973942-47973961 None:intergenic 30.0%
AAAGCTTATTTGTTCTCACA+TGG + chr6_3:47974119-47974138 None:intergenic 30.0%
CAAATAAGCTTTCAGAAGAT+TGG - chr6_3:47974127-47974146 Msa0952880:intron 30.0%
ATGGACAAAAAAACATTAGC+GGG - chr6_3:47974166-47974185 Msa0952880:intron 30.0%
!!! ATACCTAGGGTTTTAAATAG+TGG - chr6_3:47974287-47974306 Msa0952880:intron 30.0%
!!! CATCTTTGTTTTCTATCTGT+TGG + chr6_3:47974753-47974772 None:intergenic 30.0%
TTACCAAACATTTCAAAGCT+GGG - chr6_3:47975340-47975359 Msa0952880:CDS 30.0%
TAAGTTCAGTTTCTGAATGA+GGG + chr6_3:47975444-47975463 None:intergenic 30.0%
GAAATAGAAAACCATCATTG+AGG + chr6_3:47975711-47975730 None:intergenic 30.0%
!! AGCTTTGTTGCTATTGACAA+AGG + chr6_3:47973052-47973071 None:intergenic 35.0%
AGATGGGGTTTCAAAAAAAG+AGG + chr6_3:47973094-47973113 None:intergenic 35.0%
TTGAGGAGATATGACGTTAT+TGG + chr6_3:47973157-47973176 None:intergenic 35.0%
! ATCCCACCATTTTACTTTGA+TGG - chr6_3:47973180-47973199 Msa0952880:CDS 35.0%
TTTAAGTGGGGAAAAAGGAA+CGG + chr6_3:47973232-47973251 None:intergenic 35.0%
TGATTGTTGTAATGTGGGTT+GGG + chr6_3:47973344-47973363 None:intergenic 35.0%
GGTTTGGATAATAGTGATTG+GGG + chr6_3:47973373-47973392 None:intergenic 35.0%
GGGTTTGGATAATAGTGATT+GGG + chr6_3:47973374-47973393 None:intergenic 35.0%
TTGAAATTATTGGTAGGGGT+GGG + chr6_3:47973573-47973592 None:intergenic 35.0%
ATTGAAATTATTGGTAGGGG+TGG + chr6_3:47973574-47973593 None:intergenic 35.0%
!! GGTGGGAGTATTGAAATTAT+TGG + chr6_3:47973583-47973602 None:intergenic 35.0%
GAGTGAAAAAAGTTGTTGTG+GGG + chr6_3:47973668-47973687 None:intergenic 35.0%
GGAGTGAAAAAAGTTGTTGT+GGG + chr6_3:47973669-47973688 None:intergenic 35.0%
!! GATAATGTTAGTCAAGTTGG+TGG + chr6_3:47973724-47973743 None:intergenic 35.0%
TGAAATGGTAGGATATTGAC+TGG + chr6_3:47973763-47973782 None:intergenic 35.0%
TGATTGATTGAGCTTTCTTG+GGG + chr6_3:47973883-47973902 None:intergenic 35.0%
GTGATTGATTGAGCTTTCTT+GGG + chr6_3:47973884-47973903 None:intergenic 35.0%
TGTGATTGATTGAGCTTTCT+TGG + chr6_3:47973885-47973904 None:intergenic 35.0%
AAAATCCTAGATCTGGTGTT+GGG + chr6_3:47973918-47973937 None:intergenic 35.0%
TAAAATCCTAGATCTGGTGT+TGG + chr6_3:47973919-47973938 None:intergenic 35.0%
ATAAGCTTTCAGAAGATTGG+TGG - chr6_3:47974130-47974149 Msa0952880:intron 35.0%
! TTTTGGATGTGAAAAGACCT+TGG + chr6_3:47974201-47974220 None:intergenic 35.0%
! AGACCACTATTTAAAACCCT+AGG + chr6_3:47974293-47974312 None:intergenic 35.0%
! CTGAATTGTGGTCTTAATCT+AGG - chr6_3:47974339-47974358 Msa0952880:intron 35.0%
AAACACGCCAATACTTGATA+AGG - chr6_3:47974890-47974909 Msa0952880:CDS 35.0%
ACAAAAAAGTGACACCAAAG+AGG - chr6_3:47975186-47975205 Msa0952880:CDS 35.0%
!! ACTTTTGTTGTGACGTTTGT+TGG - chr6_3:47975211-47975230 Msa0952880:CDS 35.0%
!!! ATTTACCTGCTGGTTTTTCA+TGG + chr6_3:47975246-47975265 None:intergenic 35.0%
ATGAAAAACCAGCAGGTAAA+TGG - chr6_3:47975245-47975264 Msa0952880:CDS 35.0%
!! AGTCTTTGATGACTTGTTCT+GGG + chr6_3:47975290-47975309 None:intergenic 35.0%
!! TAGTCTTTGATGACTTGTTC+TGG + chr6_3:47975291-47975310 None:intergenic 35.0%
GTTACCAAACATTTCAAAGC+TGG - chr6_3:47975339-47975358 Msa0952880:CDS 35.0%
CTAAGTTCAGTTTCTGAATG+AGG + chr6_3:47975445-47975464 None:intergenic 35.0%
TGATTCAATTTCTCTAGCAG+CGG + chr6_3:47975482-47975501 None:intergenic 35.0%
! CCAATAAGTTTGTTTCCTGA+AGG + chr6_3:47975610-47975629 None:intergenic 35.0%
CCTTCAGGAAACAAACTTAT+TGG - chr6_3:47975607-47975626 Msa0952880:CDS 35.0%
TCTGACATATCAGTCATGTT+TGG + chr6_3:47975664-47975683 None:intergenic 35.0%
AAACATGACTGATATGTCAG+AGG - chr6_3:47975663-47975682 Msa0952880:CDS 35.0%
!! AATTTTGACCACCTCAATGA+TGG - chr6_3:47975697-47975716 Msa0952880:CDS 35.0%
ATAGAAAACCATCATTGAGG+TGG + chr6_3:47975708-47975727 None:intergenic 35.0%
TGGGGTTTCAAAAAAAGAGG+CGG + chr6_3:47973091-47973110 None:intergenic 40.0%
! TTGGTGTTTGAGATGGAGAT+GGG + chr6_3:47973110-47973129 None:intergenic 40.0%
AGATATGACGTTATTGGTGG+TGG + chr6_3:47973151-47973170 None:intergenic 40.0%
AGGAGATATGACGTTATTGG+TGG + chr6_3:47973154-47973173 None:intergenic 40.0%
TTAAGTGGGGAAAAAGGAAC+GGG + chr6_3:47973231-47973250 None:intergenic 40.0%
GTGATTGTTGTAATGTGGGT+TGG + chr6_3:47973345-47973364 None:intergenic 40.0%
GGGGTTTGGATAATAGTGAT+TGG + chr6_3:47973375-47973394 None:intergenic 40.0%
TGTACCAAATGTTATGTGGC+CGG + chr6_3:47973415-47973434 None:intergenic 40.0%
ATCACTAACACTAGTGCTCA+TGG - chr6_3:47973435-47973454 Msa0952880:CDS 40.0%
TGAAATTATTGGTAGGGGTG+GGG + chr6_3:47973572-47973591 None:intergenic 40.0%
TCATGGCGGTAATTCTAGTA+GGG + chr6_3:47973623-47973642 None:intergenic 40.0%
CGGAGTGAAAAAAGTTGTTG+TGG + chr6_3:47973670-47973689 None:intergenic 40.0%
!! AATGTTAGTCAAGTTGGTGG+TGG + chr6_3:47973721-47973740 None:intergenic 40.0%
GATTGATTGAGCTTTCTTGG+GGG + chr6_3:47973882-47973901 None:intergenic 40.0%
AATTACCCAACACCAGATCT+AGG - chr6_3:47973910-47973929 Msa0952880:intron 40.0%
TGTGAAAAGACCTTGGATGT+GGG + chr6_3:47974194-47974213 None:intergenic 40.0%
ATGTGAAAAGACCTTGGATG+TGG + chr6_3:47974195-47974214 None:intergenic 40.0%
ATTCAGTGCAATGTCAAGGA+TGG + chr6_3:47974325-47974344 None:intergenic 40.0%
CACAATTCAGTGCAATGTCA+AGG + chr6_3:47974329-47974348 None:intergenic 40.0%
CTTGACATTGCACTGAATTG+TGG - chr6_3:47974327-47974346 Msa0952880:intron 40.0%
! ACTCATTTCAGGTAGAGAGT+TGG - chr6_3:47974989-47975008 Msa0952880:CDS 40.0%
! CTCATTTCAGGTAGAGAGTT+GGG - chr6_3:47974990-47975009 Msa0952880:CDS 40.0%
!! CACAACAAAAGTGTCCTCTT+TGG + chr6_3:47975203-47975222 None:intergenic 40.0%
ATAGAGTTCCATTTACCTGC+TGG + chr6_3:47975256-47975275 None:intergenic 40.0%
GCAGGTAAATGGAACTCTAT+TGG - chr6_3:47975256-47975275 Msa0952880:CDS 40.0%
!! GAACCCAGCTTTGAAATGTT+TGG + chr6_3:47975346-47975365 None:intergenic 40.0%
ACTTGAATATTCCTGCTCTC+TGG + chr6_3:47975400-47975419 None:intergenic 40.0%
GAGGGATTTCTGATTGACTA+GGG + chr6_3:47975426-47975445 None:intergenic 40.0%
TGAGGGATTTCTGATTGACT+AGG + chr6_3:47975427-47975446 None:intergenic 40.0%
GATTCAATTTCTCTAGCAGC+GGG + chr6_3:47975481-47975500 None:intergenic 40.0%
! TAAGTTTGTTTCCTGAAGGC+AGG + chr6_3:47975606-47975625 None:intergenic 40.0%
! AAAAGAGGCGGGGTTAGTAA+AGG + chr6_3:47973079-47973098 None:intergenic 45.0%
GGGTTTCAAAAAAAGAGGCG+GGG + chr6_3:47973089-47973108 None:intergenic 45.0%
GGGGTTTCAAAAAAAGAGGC+GGG + chr6_3:47973090-47973109 None:intergenic 45.0%
! TGGTGTTTGAGATGGAGATG+GGG + chr6_3:47973109-47973128 None:intergenic 45.0%
! GTTGGTGTTTGAGATGGAGA+TGG + chr6_3:47973111-47973130 None:intergenic 45.0%
! ACAGTGGTTGGTGTTTGAGA+TGG + chr6_3:47973117-47973136 None:intergenic 45.0%
!! TATGACGTTATTGGTGGTGG+AGG + chr6_3:47973148-47973167 None:intergenic 45.0%
AGGAACGGGGTTATTGTCTT+GGG + chr6_3:47973217-47973236 None:intergenic 45.0%
AAGGAACGGGGTTATTGTCT+TGG + chr6_3:47973218-47973237 None:intergenic 45.0%
TAAGTGGGGAAAAAGGAACG+GGG + chr6_3:47973230-47973249 None:intergenic 45.0%
!! TGTAATGTGGGTTGGGATAG+TGG + chr6_3:47973337-47973356 None:intergenic 45.0%
TAGTGGTTGTTGAAGGGGTT+TGG + chr6_3:47973389-47973408 None:intergenic 45.0%
GGGAATAGTGGTTGTTGAAG+GGG + chr6_3:47973394-47973413 None:intergenic 45.0%
CGGGAATAGTGGTTGTTGAA+GGG + chr6_3:47973395-47973414 None:intergenic 45.0%
CCTTCAACAACCACTATTCC+CGG - chr6_3:47973393-47973412 Msa0952880:CDS 45.0%
ATTCCCGGCCACATAACATT+TGG - chr6_3:47973408-47973427 Msa0952880:CDS 45.0%
GTACCAAATGTTATGTGGCC+GGG + chr6_3:47973414-47973433 None:intergenic 45.0%
GTAATTCTAGTAGGGGTGGA+AGG + chr6_3:47973615-47973634 None:intergenic 45.0%
CATGGCGGTAATTCTAGTAG+GGG + chr6_3:47973622-47973641 None:intergenic 45.0%
GTCATGGCGGTAATTCTAGT+AGG + chr6_3:47973624-47973643 None:intergenic 45.0%
! TTTCAGAAGATTGGTGGTCG+TGG - chr6_3:47974136-47974155 Msa0952880:intron 45.0%
TGGTGGTCGTGGACAAAATA+TGG - chr6_3:47974147-47974166 Msa0952880:intron 45.0%
GTGAAAAGACCTTGGATGTG+GGG + chr6_3:47974193-47974212 None:intergenic 45.0%
CACAACCATGAAAAACCAGC+AGG - chr6_3:47975238-47975257 Msa0952880:CDS 45.0%
!! CTTTGATGACTTGTTCTGGG+AGG + chr6_3:47975287-47975306 None:intergenic 45.0%
AAGACTAGATTACCCGCTGT+TGG - chr6_3:47975304-47975323 Msa0952880:CDS 45.0%
TACCCGCTGTTGGAAATTTC+AGG - chr6_3:47975314-47975333 Msa0952880:CDS 45.0%
GACCTGAAATTTCCAACAGC+GGG + chr6_3:47975319-47975338 None:intergenic 45.0%
CGACCTGAAATTTCCAACAG+CGG + chr6_3:47975320-47975339 None:intergenic 45.0%
AATTCGATCATCCAGAGAGC+AGG - chr6_3:47975386-47975405 Msa0952880:CDS 45.0%
TTCTCTAGCAGCGGGTAAAT+GGG + chr6_3:47975473-47975492 None:intergenic 45.0%
TTTCTCTAGCAGCGGGTAAA+TGG + chr6_3:47975474-47975493 None:intergenic 45.0%
TGATTCACCGGAGTAAACCT+GGG + chr6_3:47975578-47975597 None:intergenic 45.0%
AGGCAGGATTTGTGATTCAC+CGG + chr6_3:47975590-47975609 None:intergenic 45.0%
GAATCACAAATCCTGCCTTC+AGG - chr6_3:47975592-47975611 Msa0952880:CDS 45.0%
!!! TTAAATATTTTAATATAACA+AGG - chr6_3:47974695-47974714 Msa0952880:intron 5.0%
!! ATAGTGGTGGTGGTTGGGAT+GGG + chr6_3:47973321-47973340 None:intergenic 50.0%
!! TTGGGATAGTGGTGGTGGTT+GGG + chr6_3:47973326-47973345 None:intergenic 50.0%
!! AATGTGGGTTGGGATAGTGG+TGG + chr6_3:47973334-47973353 None:intergenic 50.0%
CCGGGAATAGTGGTTGTTGA+AGG + chr6_3:47973396-47973415 None:intergenic 50.0%
TGTTATGTGGCCGGGAATAG+TGG + chr6_3:47973406-47973425 None:intergenic 50.0%
! AGTTGTTGTGGGGTTAGCGA+AGG + chr6_3:47973658-47973677 None:intergenic 50.0%
CTAATAGGTGCAGTGGTGGT+CGG + chr6_3:47973690-47973709 None:intergenic 50.0%
AGCTTTCTTGGGGGTTGTTG+TGG + chr6_3:47973873-47973892 None:intergenic 50.0%
! ACCTGGGCATTGCTACTCAT+TGG + chr6_3:47975562-47975581 None:intergenic 50.0%
AGCAATGCCCAGGTTTACTC+CGG - chr6_3:47975568-47975587 Msa0952880:CDS 50.0%
GTGATTCACCGGAGTAAACC+TGG + chr6_3:47975579-47975598 None:intergenic 50.0%
!! GTTATTGGTGGTGGAGGTGG+CGG + chr6_3:47973142-47973161 None:intergenic 55.0%
!! GACGTTATTGGTGGTGGAGG+TGG + chr6_3:47973145-47973164 None:intergenic 55.0%
CGGGGTTATTGTCTTGGGCA+AGG + chr6_3:47973212-47973231 None:intergenic 55.0%
!! ATGGAGAGAGGTGGTGGGAT+TGG + chr6_3:47973295-47973314 None:intergenic 55.0%
!! TAGTGGTGGTGGTTGGGATG+GGG + chr6_3:47973320-47973339 None:intergenic 55.0%
!! GATAGTGGTGGTGGTTGGGA+TGG + chr6_3:47973322-47973341 None:intergenic 55.0%
!! GTTGGGATAGTGGTGGTGGT+TGG + chr6_3:47973327-47973346 None:intergenic 55.0%
TTGGTAGGGGTGGGGTTAAC+AGG + chr6_3:47973564-47973583 None:intergenic 55.0%
GTGGAAGGAGTAGTGAGGGT+GGG + chr6_3:47973600-47973619 None:intergenic 55.0%
AGGGGTGGAAGGAGTAGTGA+GGG + chr6_3:47973604-47973623 None:intergenic 55.0%
TAGGGGTGGAAGGAGTAGTG+AGG + chr6_3:47973605-47973624 None:intergenic 55.0%
GGCGGTAATTCTAGTAGGGG+TGG + chr6_3:47973619-47973638 None:intergenic 55.0%
!! GAAGGCGTTGGTAGTGGTCA+TGG + chr6_3:47973640-47973659 None:intergenic 55.0%
!! GTTAGCGAAGGCGTTGGTAG+TGG + chr6_3:47973646-47973665 None:intergenic 55.0%
!! TCAAGTTGGTGGTGGTGCAG+GGG + chr6_3:47973713-47973732 None:intergenic 55.0%
!! GTCAAGTTGGTGGTGGTGCA+GGG + chr6_3:47973714-47973733 None:intergenic 55.0%
!! AGTCAAGTTGGTGGTGGTGC+AGG + chr6_3:47973715-47973734 None:intergenic 55.0%
GCCAATGAGTAGCAATGCCC+AGG - chr6_3:47975558-47975577 Msa0952880:CDS 55.0%
!! AGTGGTGGTGGTTGGGATGG+GGG + chr6_3:47973319-47973338 None:intergenic 60.0%
!! GTGGGTTGGGATAGTGGTGG+TGG + chr6_3:47973331-47973350 None:intergenic 60.0%
GGTGGAAGGAGTAGTGAGGG+TGG + chr6_3:47973601-47973620 None:intergenic 60.0%
!! GGCGTTGGTAGTGGTCATGG+CGG + chr6_3:47973637-47973656 None:intergenic 60.0%
! TGTGGGGTTAGCGAAGGCGT+TGG + chr6_3:47973652-47973671 None:intergenic 60.0%
GGGGCTAATAGGTGCAGTGG+TGG + chr6_3:47973694-47973713 None:intergenic 60.0%
GCAGGGGCTAATAGGTGCAG+TGG + chr6_3:47973697-47973716 None:intergenic 60.0%
! GTGGTGGTGCAGGGGCTAAT+AGG + chr6_3:47973705-47973724 None:intergenic 60.0%
! TTAGCGGGTCCCCACATCCA+AGG - chr6_3:47974181-47974200 Msa0952880:intron 60.0%
! GAGGTGGCGGTGACAGTGGT+TGG + chr6_3:47973129-47973148 None:intergenic 65.0%
GGGGCATGGAGAGAGGTGGT+GGG + chr6_3:47973300-47973319 None:intergenic 65.0%
! GATGGGGGCATGGAGAGAGG+TGG + chr6_3:47973304-47973323 None:intergenic 65.0%
! TGGGATGGGGGCATGGAGAG+AGG + chr6_3:47973307-47973326 None:intergenic 65.0%
TGGTGGTTGGGATGGGGGCA+TGG + chr6_3:47973314-47973333 None:intergenic 65.0%
! GGTGGAGGTGGCGGTGACAG+TGG + chr6_3:47973133-47973152 None:intergenic 70.0%
! GGGGGCATGGAGAGAGGTGG+TGG + chr6_3:47973301-47973320 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 47973021 47975735 47973021 ID=Msa0952880;Name=Msa0952880
chr6_3 mRNA 47973021 47975735 47973021 ID=Msa0952880-mRNA-1;Parent=Msa0952880;Name=Msa0952880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|559
chr6_3 exon 47974774 47975735 47974774 ID=Msa0952880-mRNA-1:exon:10563;Parent=Msa0952880-mRNA-1
chr6_3 exon 47974554 47974670 47974554 ID=Msa0952880-mRNA-1:exon:10562;Parent=Msa0952880-mRNA-1
chr6_3 exon 47973021 47973621 47973021 ID=Msa0952880-mRNA-1:exon:10561;Parent=Msa0952880-mRNA-1
chr6_3 CDS 47974774 47975735 47974774 ID=Msa0952880-mRNA-1:cds;Parent=Msa0952880-mRNA-1
chr6_3 CDS 47974554 47974670 47974554 ID=Msa0952880-mRNA-1:cds;Parent=Msa0952880-mRNA-1
chr6_3 CDS 47973021 47973621 47973021 ID=Msa0952880-mRNA-1:cds;Parent=Msa0952880-mRNA-1
Gene Sequence

>Msa0952880

ATGGACATTGACGATTGGGATCTCTTTTCCTTTGTCAATAGCAACAAAGCTACAACCTTTACTAACCCCGCCTCTTTTTTTGAAACCCCATCTCCATCTCAAACACCAACCACTGTCACCGCCACCTCCACCACCAATAACGTCATATCTCCTCAAAATATCCCACCATTTTACTTTGATGGTTTTAGCCTTGCCCAAGACAATAACCCCGTTCCTTTTTCCCCACTTAAACAAAATGATTTCATAGATCTAGACAAATTGAAAATTAATTCCAATCCCACCACCTCTCTCCATGCCCCCATCCCAACCACCACCACTATCCCAACCCACATTACAACAATCACTTCATCCCCAATCACTATTATCCAAACCCCTTCAACAACCACTATTCCCGGCCACATAACATTTGGTACAATCACTAACACTAGTGCTCATGGTTTCAATAAAAAACCCACCTTTTTTGATTGTTCAACACTTATCGAACAACAAGAAATGCAATCAAATGGGCACGACCTAAATAAATTTATACTCAACAAAAATCCTGTTAACCCCACCCCTACCAATAATTTCAATACTCCCACCCTCACTACTCCTTCCACCCCTACTAGAATTACCGCCATGACCACTACCAACGCCTTCGCTAACCCCACAACAACTTTTTTCACTCCGACCACCACTGCACCTATTAGCCCCTGCACCACCACCAACTTGACTAACATTATCACTAGTGTTCATGGAACCAGTCAATATCCTACCATTTCAGATTATGCATTACTCATCAAAGAACAACAAATTCAACCAAACAATAACAATCAAGTGTTTGATCATGCATACAACTATTCATTTGTTCCACAACAACCCCCAAGAAAGCTCAATCAATCACAAATTCAATTACCCAACACCAGATCTAGGATTTTACCTAATTCAGATTCACAAAAAGCAAAACATAATTCAAGAATCAGAAAAATTAACAACAAGGTAACTTTGGAATGCCATGTGAGAACAAATAAGCTTTCAGAAGATTGGTGGTCGTGGACAAAATATGGACAAAAAAACATTAGCGGGTCCCCACATCCAAGGAGCTACTTTAAATGTAGCAGTTCTAAAGATTGTTCAGCAAAAAAACTAGTACAAAAAAGTGACACCAAAGAGGACACTTTTGTTGTGACGTTTGTTGGAGCACACAACCATGAAAAACCAGCAGGTAAATGGAACTCTATTGGTCTGACCTCCCAGAACAAGTCATCAAAGACTAGATTACCCGCTGTTGGAAATTTCAGGTCGTTACCAAACATTTCAAAGCTGGGTTCTCAAAATGTGACGATGATGCAATTCGATCATCCAGAGAGCAGGAATATTCAAGTTCTCCCTAGTCAATCAGAAATCCCTCATTCAGAAACTGAACTTAGAGAGACCCATTTACCCGCTGCTAGAGAAATTGAATCATCTCCTAATGTTGAAAACTTGTTTTCATATGATGTGACGATGCTACAGTTTGATGAGCCAATGAGTAGCAATGCCCAGGTTTACTCCGGTGAATCACAAATCCTGCCTTCAGGAAACAAACTTATTGGAAACTCTGATGACGATGAAGAAATTATGATACCAAACATGACTGATATGTCAGAGGATTTCTTATTGAATTTTGACCACCTCAATGATGGTTTTCTATTTCCTTAG
Protein sequence

>Msa0952880

MDIDDWDLFSFVNSNKATTFTNPASFFETPSPSQTPTTVTATSTTNNVISPQNIPPFYFDGFSLAQDNNPVPFSPLKQNDFIDLDKLKINSNPTTSLHAPIPTTTTIPTHITTITSSPITIIQTPSTTTIPGHITFGTITNTSAHGFNKKPTFFDCSTLIEQQEMQSNGHDLNKFILNKNPVNPTPTNNFNTPTLTTPSTPTRITAMTTTNAFANPTTTFFTPTTTAPISPCTTTNLTNIITSVHGTSQYPTISDYALLIKEQQIQPNNNNQVFDHAYNYSFVPQQPPRKLNQSQIQLPNTRSRILPNSDSQKAKHNSRIRKINNKVTLECHVRTNKLSEDWWSWTKYGQKNISGSPHPRSYFKCSSSKDCSAKKLVQKSDTKEDTFVVTFVGAHNHEKPAGKWNSIGLTSQNKSSKTRLPAVGNFRSLPNISKLGSQNVTMMQFDHPESRNIQVLPSQSEIPHSETELRETHLPAAREIESSPNVENLFSYDVTMLQFDEPMSSNAQVYSGESQILPSGNKLIGNSDDDEEIMIPNMTDMSEDFLLNFDHLNDGFLFP*