Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0953140 | XP_039689000.1 | 62.113 | 388 | 47 | 6 | 168 | 455 | 401 | 788 | 1.34e-142 | 437 |
| Msa0953140 | XP_039689000.1 | 78.392 | 199 | 12 | 2 | 1 | 168 | 61 | 259 | 3.06e-93 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0953140 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 74 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTAGTCTTTGCAAAATT+TGG | 0.108123 | 6_3:+48976756 | None:intergenic |
| AAATTGCTTCTTCTGTTAAA+TGG | 0.131608 | 6_3:-48976891 | Msa0953140:CDS |
| TCCTTATCATCCATCTTATT+TGG | 0.165376 | 6_3:+48978547 | None:intergenic |
| ATACTTCAAAGACACCTTTA+TGG | 0.189772 | 6_3:-48977546 | Msa0953140:CDS |
| ATATATTTCAACATGAATTA+TGG | 0.225211 | 6_3:-48977289 | Msa0953140:CDS |
| AAGGTGTCTTTGAAGTATTC+TGG | 0.227681 | 6_3:+48977551 | None:intergenic |
| TTCTACTTCCTCAGGAATAT+TGG | 0.238625 | 6_3:+48976788 | None:intergenic |
| AGGACAGATGATTTGATTCT+TGG | 0.289591 | 6_3:-48976813 | Msa0953140:CDS |
| ATAATTATGGAGATGATCTT+TGG | 0.290739 | 6_3:+48976619 | None:intergenic |
| AATTGCTTCTTCTGTTAAAT+GGG | 0.310460 | 6_3:-48976890 | Msa0953140:CDS |
| CTATTCACAATGTGCTTACT+TGG | 0.311024 | 6_3:+48977047 | None:intergenic |
| ATTCAAAGACTTTAAATCTC+TGG | 0.358863 | 6_3:+48978204 | None:intergenic |
| TAATTATGGAGATGATCTTT+GGG | 0.359234 | 6_3:+48976620 | None:intergenic |
| TTGTGGGATTGAAAATAATA+AGG | 0.367546 | 6_3:-48977252 | Msa0953140:CDS |
| CCACGTTCCAACTTTAGTTT+CGG | 0.374812 | 6_3:+48977356 | None:intergenic |
| GGATTGCATGTGTGGATTGT+GGG | 0.386909 | 6_3:-48977268 | Msa0953140:CDS |
| AATAGAAGCGCAACGACATA+AGG | 0.407517 | 6_3:-48977414 | Msa0953140:CDS |
| GCCAAATAAGATGGATGATA+AGG | 0.411161 | 6_3:-48978548 | Msa0953140:CDS |
| TCATATACTTGTCCAATCTT+AGG | 0.415728 | 6_3:+48978709 | None:intergenic |
| CTATGAGGAGACCGTTTCTA+AGG | 0.416336 | 6_3:-48978378 | Msa0953140:CDS |
| GCATGTAGTAGAGCAAATAT+TGG | 0.416599 | 6_3:-48978313 | Msa0953140:CDS |
| GAAAATAATAAGGATGAAGA+TGG | 0.417968 | 6_3:-48977242 | Msa0953140:CDS |
| CTTAGAAACGGTCTCCTCAT+AGG | 0.418860 | 6_3:+48978379 | None:intergenic |
| AGGTGTCTTTGAAGTATTCT+GGG | 0.430328 | 6_3:+48977552 | None:intergenic |
| TTCAAAGACACCTTTATGGC+TGG | 0.432131 | 6_3:-48977542 | Msa0953140:CDS |
| GGACAGATGATTTGATTCTT+GGG | 0.434817 | 6_3:-48976812 | Msa0953140:CDS |
| CAAGTAAGCACATTGTGAAT+AGG | 0.442114 | 6_3:-48977046 | Msa0953140:CDS |
| TATGAATGTGTGCCTAAGAT+TGG | 0.455212 | 6_3:-48978721 | Msa0953140:CDS |
| AGGTTATTTGCCAAATAAGA+TGG | 0.455356 | 6_3:-48978557 | Msa0953140:CDS |
| GGAAGGATTTCTACTTCCTC+AGG | 0.458382 | 6_3:+48976780 | None:intergenic |
| TTCTAAACCGAAACTAAAGT+TGG | 0.458635 | 6_3:-48977363 | Msa0953140:CDS |
| GCAACGACATAAGGAGTTAC+TGG | 0.459209 | 6_3:-48977405 | Msa0953140:CDS |
| TGGATTGCATGTGTGGATTG+TGG | 0.464007 | 6_3:-48977269 | Msa0953140:CDS |
| TCTCAATATCCCAGCCATAA+AGG | 0.474772 | 6_3:+48977532 | None:intergenic |
| ATGTCGTTGCGCTTCTATTG+CGG | 0.475783 | 6_3:+48977418 | None:intergenic |
| TTAGTCTTTGCAAAATTTGG+TGG | 0.476004 | 6_3:+48976759 | None:intergenic |
| TATAGCTGTGTGGAGAAGGC+TGG | 0.484277 | 6_3:-48976927 | Msa0953140:CDS |
| CTTATATAGCTGTGTGGAGA+AGG | 0.497066 | 6_3:-48976931 | Msa0953140:CDS |
| TGACATAGCTGACAATGTCT+TGG | 0.510088 | 6_3:-48976991 | Msa0953140:CDS |
| TTCCTTGCAGACCTTAGAAA+CGG | 0.510667 | 6_3:+48978367 | None:intergenic |
| TCAAAGACACCTTTATGGCT+GGG | 0.528739 | 6_3:-48977541 | Msa0953140:CDS |
| GGTAGTGGTAAAAGATTCAA+AGG | 0.534413 | 6_3:-48976735 | Msa0953140:CDS |
| AAAATAATAAGGATGAAGAT+GGG | 0.538281 | 6_3:-48977241 | Msa0953140:CDS |
| TAATAAGGATGAAGATGGGA+TGG | 0.542098 | 6_3:-48977237 | Msa0953140:CDS |
| GAACTCATCATCATCATTCG+TGG | 0.542497 | 6_3:+48977715 | None:intergenic |
| CATGATAATAGTGAGATCAA+TGG | 0.542763 | 6_3:-48977200 | Msa0953140:intron |
| ATCCACTTGCTTCACCTATG+AGG | 0.549579 | 6_3:-48978393 | Msa0953140:CDS |
| AAGAATCAAATCATCTGTCC+TGG | 0.550254 | 6_3:+48976815 | None:intergenic |
| TCTTTGCAAAATTTGGTGGA+AGG | 0.554025 | 6_3:+48976763 | None:intergenic |
| TTTGCAAAGACTAAAGGTAG+TGG | 0.555928 | 6_3:-48976750 | Msa0953140:CDS |
| TGAATTATGGATTGCATGTG+TGG | 0.559216 | 6_3:-48977276 | Msa0953140:CDS |
| GCAAACTCATTTCTCATGTG+TGG | 0.577677 | 6_3:-48976959 | Msa0953140:CDS |
| ACACAAAGTATGTGTCTACA+AGG | 0.578783 | 6_3:+48977098 | None:intergenic |
| GGAGAAGGCTGGAAAAGATA+AGG | 0.578848 | 6_3:-48976916 | Msa0953140:CDS |
| ATTGCTTCTTCTGTTAAATG+GGG | 0.580707 | 6_3:-48976889 | Msa0953140:CDS |
| GTGAAGCAAGTGGATGTGTA+TGG | 0.586364 | 6_3:+48978401 | None:intergenic |
| ATTCAAAGGTGGCAAAGAGA+AGG | 0.590018 | 6_3:-48976721 | Msa0953140:CDS |
| AAGGGAGTTCTAAGAGAACC+AGG | 0.594888 | 6_3:-48976833 | Msa0953140:intron |
| GACCGTTTCTAAGGTCTGCA+AGG | 0.609485 | 6_3:-48978369 | Msa0953140:CDS |
| ACTTATTAAAAGAACAACGT+GGG | 0.609528 | 6_3:-48978273 | Msa0953140:CDS |
| CTTATTAAAAGAACAACGTG+GGG | 0.620642 | 6_3:-48978272 | Msa0953140:CDS |
| GTAAGCACATTGTGAATAGG+TGG | 0.621765 | 6_3:-48977043 | Msa0953140:CDS |
| CACTTATTAAAAGAACAACG+TGG | 0.622568 | 6_3:-48978274 | Msa0953140:CDS |
| TGTTTGAGATTCGAAGCATG+TGG | 0.623687 | 6_3:-48977577 | Msa0953140:intron |
| AGTTGGAACGTGGTATAGAG+AGG | 0.637880 | 6_3:-48977346 | Msa0953140:CDS |
| AATTATGGAGATGATCTTTG+GGG | 0.641900 | 6_3:+48976621 | None:intergenic |
| TCTTGGGTCCAATATTCCTG+AGG | 0.650417 | 6_3:-48976796 | Msa0953140:CDS |
| GTATATGATACGTTACAAGA+AGG | 0.651642 | 6_3:-48978694 | Msa0953140:CDS |
| CTCCTCATAGGTGAAGCAAG+TGG | 0.652880 | 6_3:+48978391 | None:intergenic |
| TCTCCACACAGCTATATAAG+CGG | 0.674698 | 6_3:+48976934 | None:intergenic |
| CCGAAACTAAAGTTGGAACG+TGG | 0.683259 | 6_3:-48977356 | Msa0953140:CDS |
| AGTGGTAAAAGATTCAAAGG+TGG | 0.684382 | 6_3:-48976732 | Msa0953140:CDS |
| TTATTAAAAGAACAACGTGG+GGG | 0.742887 | 6_3:-48978271 | Msa0953140:CDS |
| GAACCGCTTATATAGCTGTG+TGG | 0.756000 | 6_3:-48976937 | Msa0953140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGAAAAAATACATATTTA+AGG | + | chr6_3:48976732-48976751 | None:intergenic | 10.0% |
| !!! | ATTTTTTATTTTTTTGACAA+AGG | + | chr6_3:48976804-48976823 | None:intergenic | 10.0% |
| !!! | TAACTTTTTTTTCTTTTCAT+GGG | - | chr6_3:48976835-48976854 | Msa0953140:intron | 15.0% |
| !! | ATATATTTCAACATGAATTA+TGG | - | chr6_3:48978506-48978525 | Msa0953140:intron | 15.0% |
| !! | CAGGTATATTATAATTAGTA+TGG | - | chr6_3:48976659-48976678 | Msa0953140:CDS | 20.0% |
| !! | TGAATATGATCAATATAACA+AGG | + | chr6_3:48976699-48976718 | None:intergenic | 20.0% |
| !!! | GTAACTTTTTTTTCTTTTCA+TGG | - | chr6_3:48976834-48976853 | Msa0953140:intron | 20.0% |
| !! | ATGATATTGGGTTTATATAT+AGG | - | chr6_3:48976858-48976877 | Msa0953140:intron | 20.0% |
| !!! | TTTTCTTTCTATTTTCTTGT+TGG | - | chr6_3:48976900-48976919 | Msa0953140:CDS | 20.0% |
| !! | AGGAAAAATTATTCCTTATT+TGG | - | chr6_3:48977746-48977765 | Msa0953140:CDS | 20.0% |
| !!! | GGAAAAATTATTCCTTATTT+GGG | - | chr6_3:48977747-48977766 | Msa0953140:CDS | 20.0% |
| !!! | GAAAAATTATTCCTTATTTG+GGG | - | chr6_3:48977748-48977767 | Msa0953140:CDS | 20.0% |
| !!! | AAAAAAATCTCTGAAAAAGT+AGG | - | chr6_3:48978052-48978071 | Msa0953140:intron | 20.0% |
| !! | TTGAGTTAGAAAAGAATAAA+TGG | - | chr6_3:48978185-48978204 | Msa0953140:intron | 20.0% |
| !! | AAAATAATAAGGATGAAGAT+GGG | - | chr6_3:48978554-48978573 | Msa0953140:CDS | 20.0% |
| !! | TGTTAACATGGAAAAATAAT+TGG | - | chr6_3:48978930-48978949 | Msa0953140:intron | 20.0% |
| !!! | AACTTGTTTTCAAATTTCTC+AGG | - | chr6_3:48976640-48976659 | Msa0953140:CDS | 25.0% |
| ! | TAACTCAATAGTTGAATATG+AGG | + | chr6_3:48976781-48976800 | None:intergenic | 25.0% |
| ! | ATATATAGGTGTGTATTAGT+TGG | - | chr6_3:48976872-48976891 | Msa0953140:intron | 25.0% |
| !! | TGTTGTTTATATCTTGTTGA+TGG | - | chr6_3:48976999-48977018 | Msa0953140:CDS | 25.0% |
| ! | ATAAAAACAACATTAAGCGT+TGG | - | chr6_3:48977192-48977211 | Msa0953140:intron | 25.0% |
| !!! | ATGCAAATGTTGTTTTCAAA+TGG | - | chr6_3:48977330-48977349 | Msa0953140:CDS | 25.0% |
| !!! | TGCAAATGTTGTTTTCAAAT+GGG | - | chr6_3:48977331-48977350 | Msa0953140:CDS | 25.0% |
| ! | ACTTATTAAAAGAACAACGT+GGG | - | chr6_3:48977522-48977541 | Msa0953140:CDS | 25.0% |
| ! | ATTCAAAGACTTTAAATCTC+TGG | + | chr6_3:48977594-48977613 | None:intergenic | 25.0% |
| !! | TTTTGATAGACTACTTTAGA+AGG | - | chr6_3:48977633-48977652 | Msa0953140:intron | 25.0% |
| ! | TCATACACATAATAAAAGGA+TGG | + | chr6_3:48977674-48977693 | None:intergenic | 25.0% |
| !! | ATCCTTTTATTATGTGTATG+AGG | - | chr6_3:48977673-48977692 | Msa0953140:intron | 25.0% |
| ! | TACCTCATACACATAATAAA+AGG | + | chr6_3:48977678-48977697 | None:intergenic | 25.0% |
| !! | TTTTATTATGTGTATGAGGT+AGG | - | chr6_3:48977677-48977696 | Msa0953140:intron | 25.0% |
| !! | ATGGTTGTTTGAAAAGTTTT+TGG | - | chr6_3:48977910-48977929 | Msa0953140:intron | 25.0% |
| !!! | ATTTTGTATAGCTACTTTCA+TGG | + | chr6_3:48977987-48978006 | None:intergenic | 25.0% |
| !! | GAAAGTGAGAATTCTTTTTA+TGG | - | chr6_3:48978301-48978320 | Msa0953140:CDS | 25.0% |
| ! | AATTCAACCAAGTTAACATT+AGG | + | chr6_3:48978340-48978359 | None:intergenic | 25.0% |
| !!! | ATGTTAACTTGGTTGAATTT+TGG | - | chr6_3:48978341-48978360 | Msa0953140:CDS | 25.0% |
| ! | TTGTGGGATTGAAAATAATA+AGG | - | chr6_3:48978543-48978562 | Msa0953140:CDS | 25.0% |
| ! | GAAAATAATAAGGATGAAGA+TGG | - | chr6_3:48978553-48978572 | Msa0953140:CDS | 25.0% |
| !!! | ACACATACTTTGTGTTTTAA+AGG | - | chr6_3:48978705-48978724 | Msa0953140:CDS | 25.0% |
| !!! | CACATACTTTGTGTTTTAAA+GGG | - | chr6_3:48978706-48978725 | Msa0953140:CDS | 25.0% |
| ! | AAATTGCTTCTTCTGTTAAA+TGG | - | chr6_3:48978904-48978923 | Msa0953140:intron | 25.0% |
| ! | AATTGCTTCTTCTGTTAAAT+GGG | - | chr6_3:48978905-48978924 | Msa0953140:intron | 25.0% |
| ! | AAATAATTGGACGAATTTGA+AGG | - | chr6_3:48978943-48978962 | Msa0953140:intron | 25.0% |
| ! | AATAATTGGACGAATTTGAA+GGG | - | chr6_3:48978944-48978963 | Msa0953140:intron | 25.0% |
| ! | AAAAAAAGCAAGACTTTGTA+AGG | - | chr6_3:48979113-48979132 | Msa0953140:intron | 25.0% |
| GAATATGAGGAGATATAACA+AGG | + | chr6_3:48976768-48976787 | None:intergenic | 30.0% | |
| ! | TTCTTTTCATGGGATGATAT+TGG | - | chr6_3:48976845-48976864 | Msa0953140:intron | 30.0% |
| ! | TCTTTTCATGGGATGATATT+GGG | - | chr6_3:48976846-48976865 | Msa0953140:intron | 30.0% |
| !!! | TTGGTTTTATTGCTGTTCAA+TGG | - | chr6_3:48976919-48976938 | Msa0953140:CDS | 30.0% |
| !! | TTTTATTGCTGTTCAATGGT+GGG | - | chr6_3:48976923-48976942 | Msa0953140:CDS | 30.0% |
| TCATATACTTGTCCAATCTT+AGG | + | chr6_3:48977089-48977108 | None:intergenic | 30.0% | |
| GTATATGATACGTTACAAGA+AGG | - | chr6_3:48977101-48977120 | Msa0953140:CDS | 30.0% | |
| AGGTTATTTGCCAAATAAGA+TGG | - | chr6_3:48977238-48977257 | Msa0953140:CDS | 30.0% | |
| TCCTTATCATCCATCTTATT+TGG | + | chr6_3:48977251-48977270 | None:intergenic | 30.0% | |
| !!! | AAATGTTGTTTTCAAATGGG+AGG | - | chr6_3:48977334-48977353 | Msa0953140:CDS | 30.0% |
| !!! | AATGTTGTTTTCAAATGGGA+GGG | - | chr6_3:48977335-48977354 | Msa0953140:CDS | 30.0% |
| ! | AATAAGTGGAAAGCTTTTGA+AGG | + | chr6_3:48977509-48977528 | None:intergenic | 30.0% |
| ! | CACGTTGTTCTTTTAATAAG+TGG | + | chr6_3:48977523-48977542 | None:intergenic | 30.0% |
| CACTTATTAAAAGAACAACG+TGG | - | chr6_3:48977521-48977540 | Msa0953140:CDS | 30.0% | |
| CTTATTAAAAGAACAACGTG+GGG | - | chr6_3:48977523-48977542 | Msa0953140:CDS | 30.0% | |
| TTATTAAAAGAACAACGTGG+GGG | - | chr6_3:48977524-48977543 | Msa0953140:CDS | 30.0% | |
| AGGTAATAGATTGTCTATGA+TGG | + | chr6_3:48977847-48977866 | None:intergenic | 30.0% | |
| CATAGACAATCTATTACCTT+CGG | - | chr6_3:48977848-48977867 | Msa0953140:intron | 30.0% | |
| AGAAAAGTGATTCATTTGCA+TGG | - | chr6_3:48977891-48977910 | Msa0953140:intron | 30.0% | |
| !! | TGAAAAGTTTTTGGAAGCAA+TGG | - | chr6_3:48977919-48977938 | Msa0953140:intron | 30.0% |
| !! | GAAAAGTTTTTGGAAGCAAT+GGG | - | chr6_3:48977920-48977939 | Msa0953140:intron | 30.0% |
| TGATCGGTTATTATAAGAGT+TGG | + | chr6_3:48977956-48977975 | None:intergenic | 30.0% | |
| ! | AAGTTTCAAGTCATGTGTTT+GGG | - | chr6_3:48978108-48978127 | Msa0953140:intron | 30.0% |
| AATTGAGTTTGAAGAGACTT+GGG | - | chr6_3:48978144-48978163 | Msa0953140:intron | 30.0% | |
| ATACTTCAAAGACACCTTTA+TGG | - | chr6_3:48978249-48978268 | Msa0953140:CDS | 30.0% | |
| CTTGAATCCTAATGTTAACT+TGG | - | chr6_3:48978330-48978349 | Msa0953140:CDS | 30.0% | |
| TTCTAAACCGAAACTAAAGT+TGG | - | chr6_3:48978432-48978451 | Msa0953140:CDS | 30.0% | |
| CATGATAATAGTGAGATCAA+TGG | - | chr6_3:48978595-48978614 | Msa0953140:CDS | 30.0% | |
| TTGCTCATGCAAAATATTTC+AGG | - | chr6_3:48978663-48978682 | Msa0953140:CDS | 30.0% | |
| TTGTCAGCTATGTCAAAAAT+AGG | + | chr6_3:48978799-48978818 | None:intergenic | 30.0% | |
| ATTGCTTCTTCTGTTAAATG+GGG | - | chr6_3:48978906-48978925 | Msa0953140:intron | 30.0% | |
| ! | TTAGTCTTTGCAAAATTTGG+TGG | + | chr6_3:48979039-48979058 | None:intergenic | 30.0% |
| ! | CCTTTAGTCTTTGCAAAATT+TGG | + | chr6_3:48979042-48979061 | None:intergenic | 30.0% |
| ! | CCAAATTTTGCAAAGACTAA+AGG | - | chr6_3:48979039-48979058 | Msa0953140:intron | 30.0% |
| !! | GTTTTATTGCTGTTCAATGG+TGG | - | chr6_3:48976922-48976941 | Msa0953140:CDS | 35.0% |
| CAAGATATAAACAACAGCAC+AGG | + | chr6_3:48976995-48977014 | None:intergenic | 35.0% | |
| TATGAATGTGTGCCTAAGAT+TGG | - | chr6_3:48977074-48977093 | Msa0953140:CDS | 35.0% | |
| !! | CATTTTGTTTGCTCGAAAGA+AGG | - | chr6_3:48977218-48977237 | Msa0953140:CDS | 35.0% |
| GCCAAATAAGATGGATGATA+AGG | - | chr6_3:48977247-48977266 | Msa0953140:CDS | 35.0% | |
| GCAAAGTGAATCTATTGTCT+AGG | - | chr6_3:48977271-48977290 | Msa0953140:CDS | 35.0% | |
| TTGTCTAGGCTTAAAGAAGA+AGG | - | chr6_3:48977285-48977304 | Msa0953140:CDS | 35.0% | |
| TGTCTAGGCTTAAAGAAGAA+GGG | - | chr6_3:48977286-48977305 | Msa0953140:CDS | 35.0% | |
| !!! | ATGTTGTTTTCAAATGGGAG+GGG | - | chr6_3:48977336-48977355 | Msa0953140:CDS | 35.0% |
| GCATGTAGTAGAGCAAATAT+TGG | - | chr6_3:48977482-48977501 | Msa0953140:intron | 35.0% | |
| ! | TTATTCCTTATTTGGGGATG+TGG | - | chr6_3:48977754-48977773 | Msa0953140:CDS | 35.0% |
| ! | TTGATTTTTGCACCTTTCAC+TGG | - | chr6_3:48977815-48977834 | Msa0953140:intron | 35.0% |
| ! | TGATTTTTGCACCTTTCACT+GGG | - | chr6_3:48977816-48977835 | Msa0953140:intron | 35.0% |
| TTTCATGGAAGGATCTTGAT+CGG | + | chr6_3:48977972-48977991 | None:intergenic | 35.0% | |
| ! | TGTATAGCTACTTTCATGGA+AGG | + | chr6_3:48977983-48978002 | None:intergenic | 35.0% |
| ! | GAAGTTTCAAGTCATGTGTT+TGG | - | chr6_3:48978107-48978126 | Msa0953140:intron | 35.0% |
| ! | AGTTTCAAGTCATGTGTTTG+GGG | - | chr6_3:48978109-48978128 | Msa0953140:intron | 35.0% |
| CAAGTCTCTTCAAACTCAAT+TGG | + | chr6_3:48978145-48978164 | None:intergenic | 35.0% | |
| CAATTGAGTTTGAAGAGACT+TGG | - | chr6_3:48978143-48978162 | Msa0953140:intron | 35.0% | |
| !! | AGGTGTCTTTGAAGTATTCT+GGG | + | chr6_3:48978246-48978265 | None:intergenic | 35.0% |
| !! | AAGGTGTCTTTGAAGTATTC+TGG | + | chr6_3:48978247-48978266 | None:intergenic | 35.0% |
| ! | ACTTGGTTGAATTTTGGATG+AGG | - | chr6_3:48978347-48978366 | Msa0953140:CDS | 35.0% |
| ! | TGAATTATGGATTGCATGTG+TGG | - | chr6_3:48978519-48978538 | Msa0953140:intron | 35.0% |
| TAATAAGGATGAAGATGGGA+TGG | - | chr6_3:48978558-48978577 | Msa0953140:CDS | 35.0% | |
| TGAGCAATTTGCATTGTGAT+CGG | + | chr6_3:48978650-48978669 | None:intergenic | 35.0% | |
| TGCAAAATATTTCAGGCTGA+AGG | - | chr6_3:48978670-48978689 | Msa0953140:CDS | 35.0% | |
| ACACAAAGTATGTGTCTACA+AGG | + | chr6_3:48978700-48978719 | None:intergenic | 35.0% | |
| CTATTCACAATGTGCTTACT+TGG | + | chr6_3:48978751-48978770 | None:intergenic | 35.0% | |
| CAAGTAAGCACATTGTGAAT+AGG | - | chr6_3:48978749-48978768 | Msa0953140:intron | 35.0% | |
| AAGAATCAAATCATCTGTCC+TGG | + | chr6_3:48978983-48979002 | None:intergenic | 35.0% | |
| AGGACAGATGATTTGATTCT+TGG | - | chr6_3:48978982-48979001 | Msa0953140:intron | 35.0% | |
| GGACAGATGATTTGATTCTT+GGG | - | chr6_3:48978983-48979002 | Msa0953140:intron | 35.0% | |
| TTCTACTTCCTCAGGAATAT+TGG | + | chr6_3:48979010-48979029 | None:intergenic | 35.0% | |
| ! | TCTTTGCAAAATTTGGTGGA+AGG | + | chr6_3:48979035-48979054 | None:intergenic | 35.0% |
| TTTGCAAAGACTAAAGGTAG+TGG | - | chr6_3:48979045-48979064 | Msa0953140:intron | 35.0% | |
| ! | GGTAGTGGTAAAAGATTCAA+AGG | - | chr6_3:48979060-48979079 | Msa0953140:intron | 35.0% |
| AGTGGTAAAAGATTCAAAGG+TGG | - | chr6_3:48979063-48979082 | Msa0953140:intron | 35.0% | |
| !! | TCAATGGTGGGTTTGACTAT+AGG | - | chr6_3:48976935-48976954 | Msa0953140:CDS | 40.0% |
| GAAAAATACGCACTCTCTGT+CGG | - | chr6_3:48977137-48977156 | Msa0953140:intron | 40.0% | |
| ! | AGAAGGGCTTTAACAAGAGA+AGG | - | chr6_3:48977302-48977321 | Msa0953140:CDS | 40.0% |
| !!! | TGTTGTTTTCAAATGGGAGG+GGG | - | chr6_3:48977337-48977356 | Msa0953140:CDS | 40.0% |
| TTCCTTGCAGACCTTAGAAA+CGG | + | chr6_3:48977431-48977450 | None:intergenic | 40.0% | |
| !!! | ACCGACTGAAGCATGTTTTT+TGG | - | chr6_3:48977708-48977727 | Msa0953140:CDS | 40.0% |
| CCCAAAAAACATGCTTCAGT+CGG | + | chr6_3:48977712-48977731 | None:intergenic | 40.0% | |
| !!! | CCGACTGAAGCATGTTTTTT+GGG | - | chr6_3:48977709-48977728 | Msa0953140:CDS | 40.0% |
| !!! | AAGCATGTTTTTTGGGCAGA+TGG | - | chr6_3:48977716-48977735 | Msa0953140:CDS | 40.0% |
| TTTGGGCAGATGGTATTTGT+AGG | - | chr6_3:48977726-48977745 | Msa0953140:CDS | 40.0% | |
| TGAAACCACATCCCCAAATA+AGG | + | chr6_3:48977762-48977781 | None:intergenic | 40.0% | |
| CAATCTATTACCTTCGGAGT+AGG | - | chr6_3:48977854-48977873 | Msa0953140:intron | 40.0% | |
| TGTTATAAGTCCTACTCCGA+AGG | + | chr6_3:48977867-48977886 | None:intergenic | 40.0% | |
| !! | AAGTTTTTGGAAGCAATGGG+TGG | - | chr6_3:48977923-48977942 | Msa0953140:intron | 40.0% |
| GAACTCATCATCATCATTCG+TGG | + | chr6_3:48978083-48978102 | None:intergenic | 40.0% | |
| ! | TGTTTGAGATTCGAAGCATG+TGG | - | chr6_3:48978218-48978237 | Msa0953140:CDS | 40.0% |
| TTCAAAGACACCTTTATGGC+TGG | - | chr6_3:48978253-48978272 | Msa0953140:CDS | 40.0% | |
| TCAAAGACACCTTTATGGCT+GGG | - | chr6_3:48978254-48978273 | Msa0953140:CDS | 40.0% | |
| TCTCAATATCCCAGCCATAA+AGG | + | chr6_3:48978266-48978285 | None:intergenic | 40.0% | |
| ! | AATAGAAGCGCAACGACATA+AGG | - | chr6_3:48978381-48978400 | Msa0953140:CDS | 40.0% |
| ! | CCACGTTCCAACTTTAGTTT+CGG | + | chr6_3:48978442-48978461 | None:intergenic | 40.0% |
| CAATGGTAAACTTCGAGAAG+TGG | - | chr6_3:48978612-48978631 | Msa0953140:CDS | 40.0% | |
| GAGCAATTTGCATTGTGATC+GGG | + | chr6_3:48978649-48978668 | None:intergenic | 40.0% | |
| GTAAGCACATTGTGAATAGG+TGG | - | chr6_3:48978752-48978771 | Msa0953140:intron | 40.0% | |
| TGACATAGCTGACAATGTCT+TGG | - | chr6_3:48978804-48978823 | Msa0953140:intron | 40.0% | |
| GCAAACTCATTTCTCATGTG+TGG | - | chr6_3:48978836-48978855 | Msa0953140:intron | 40.0% | |
| TCTCCACACAGCTATATAAG+CGG | + | chr6_3:48978864-48978883 | None:intergenic | 40.0% | |
| CTTATATAGCTGTGTGGAGA+AGG | - | chr6_3:48978864-48978883 | Msa0953140:intron | 40.0% | |
| GTTAAATGGGGCTGTTAACA+TGG | - | chr6_3:48978918-48978937 | Msa0953140:intron | 40.0% | |
| ATTCAAAGGTGGCAAAGAGA+AGG | - | chr6_3:48979074-48979093 | Msa0953140:intron | 40.0% | |
| !! | TGGTGGGTTTGACTATAGGA+AGG | - | chr6_3:48976939-48976958 | Msa0953140:CDS | 45.0% |
| GTGAAGCAAGTGGATGTGTA+TGG | + | chr6_3:48977397-48977416 | None:intergenic | 45.0% | |
| ATCCACTTGCTTCACCTATG+AGG | - | chr6_3:48977402-48977421 | Msa0953140:CDS | 45.0% | |
| CTTAGAAACGGTCTCCTCAT+AGG | + | chr6_3:48977419-48977438 | None:intergenic | 45.0% | |
| CTATGAGGAGACCGTTTCTA+AGG | - | chr6_3:48977417-48977436 | Msa0953140:CDS | 45.0% | |
| CGTGGGGGTTATGAAAATGT+TGG | - | chr6_3:48977539-48977558 | Msa0953140:CDS | 45.0% | |
| TGATGGTTGATCCCAGTGAA+AGG | + | chr6_3:48977830-48977849 | None:intergenic | 45.0% | |
| !! | CTTGGGCGTTTTTGATGACA+AGG | - | chr6_3:48978161-48978180 | Msa0953140:intron | 45.0% |
| ATGTCGTTGCGCTTCTATTG+CGG | + | chr6_3:48978380-48978399 | None:intergenic | 45.0% | |
| GCAACGACATAAGGAGTTAC+TGG | - | chr6_3:48978390-48978409 | Msa0953140:CDS | 45.0% | |
| CCGAAACTAAAGTTGGAACG+TGG | - | chr6_3:48978439-48978458 | Msa0953140:CDS | 45.0% | |
| AGTTGGAACGTGGTATAGAG+AGG | - | chr6_3:48978449-48978468 | Msa0953140:intron | 45.0% | |
| ! | TGGATTGCATGTGTGGATTG+TGG | - | chr6_3:48978526-48978545 | Msa0953140:intron | 45.0% |
| ! | GGATTGCATGTGTGGATTGT+GGG | - | chr6_3:48978527-48978546 | Msa0953140:intron | 45.0% |
| GAACCGCTTATATAGCTGTG+TGG | - | chr6_3:48978858-48978877 | Msa0953140:intron | 45.0% | |
| GGAGAAGGCTGGAAAAGATA+AGG | - | chr6_3:48978879-48978898 | Msa0953140:intron | 45.0% | |
| !! | AAGGGAGTTCTAAGAGAACC+AGG | - | chr6_3:48978962-48978981 | Msa0953140:intron | 45.0% |
| TCTTGGGTCCAATATTCCTG+AGG | - | chr6_3:48978999-48979018 | Msa0953140:intron | 45.0% | |
| GGAAGGATTTCTACTTCCTC+AGG | + | chr6_3:48979018-48979037 | None:intergenic | 45.0% | |
| !!! | ATATTTATTTTGTTAATTTT+AGG | - | chr6_3:48977049-48977068 | Msa0953140:CDS | 5.0% |
| ! | GTTTTCAAATGGGAGGGGGA+AGG | - | chr6_3:48977341-48977360 | Msa0953140:CDS | 50.0% |
| CTCCTCATAGGTGAAGCAAG+TGG | + | chr6_3:48977407-48977426 | None:intergenic | 50.0% | |
| !! | GACCGTTTCTAAGGTCTGCA+AGG | - | chr6_3:48977426-48977445 | Msa0953140:CDS | 50.0% |
| TATAGCTGTGTGGAGAAGGC+TGG | - | chr6_3:48978868-48978887 | Msa0953140:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 48976623 | 48979194 | 48976623 | ID=Msa0953140;Name=Msa0953140 |
| chr6_3 | mRNA | 48976623 | 48979194 | 48976623 | ID=Msa0953140-mRNA-1;Parent=Msa0953140;Name=Msa0953140-mRNA-1;_AED=0.20;_eAED=0.27;_QI=0|0|0|0.75|0.28|0.12|8|0|455 |
| chr6_3 | exon | 48979156 | 48979194 | 48979156 | ID=Msa0953140-mRNA-1:exon:10740;Parent=Msa0953140-mRNA-1 |
| chr6_3 | exon | 48978531 | 48978746 | 48978531 | ID=Msa0953140-mRNA-1:exon:10739;Parent=Msa0953140-mRNA-1 |
| chr6_3 | exon | 48978214 | 48978461 | 48978214 | ID=Msa0953140-mRNA-1:exon:10738;Parent=Msa0953140-mRNA-1 |
| chr6_3 | exon | 48977708 | 48977787 | 48977708 | ID=Msa0953140-mRNA-1:exon:10737;Parent=Msa0953140-mRNA-1 |
| chr6_3 | exon | 48977513 | 48977591 | 48977513 | ID=Msa0953140-mRNA-1:exon:10736;Parent=Msa0953140-mRNA-1 |
| chr6_3 | exon | 48977201 | 48977448 | 48977201 | ID=Msa0953140-mRNA-1:exon:10735;Parent=Msa0953140-mRNA-1 |
| chr6_3 | exon | 48976887 | 48977125 | 48976887 | ID=Msa0953140-mRNA-1:exon:10734;Parent=Msa0953140-mRNA-1 |
| chr6_3 | exon | 48976623 | 48976841 | 48976623 | ID=Msa0953140-mRNA-1:exon:10733;Parent=Msa0953140-mRNA-1 |
| chr6_3 | CDS | 48979156 | 48979194 | 48979156 | ID=Msa0953140-mRNA-1:cds;Parent=Msa0953140-mRNA-1 |
| chr6_3 | CDS | 48978531 | 48978746 | 48978531 | ID=Msa0953140-mRNA-1:cds;Parent=Msa0953140-mRNA-1 |
| chr6_3 | CDS | 48978214 | 48978461 | 48978214 | ID=Msa0953140-mRNA-1:cds;Parent=Msa0953140-mRNA-1 |
| chr6_3 | CDS | 48977708 | 48977787 | 48977708 | ID=Msa0953140-mRNA-1:cds;Parent=Msa0953140-mRNA-1 |
| chr6_3 | CDS | 48977513 | 48977591 | 48977513 | ID=Msa0953140-mRNA-1:cds;Parent=Msa0953140-mRNA-1 |
| chr6_3 | CDS | 48977201 | 48977448 | 48977201 | ID=Msa0953140-mRNA-1:cds;Parent=Msa0953140-mRNA-1 |
| chr6_3 | CDS | 48976887 | 48977125 | 48976887 | ID=Msa0953140-mRNA-1:cds;Parent=Msa0953140-mRNA-1 |
| chr6_3 | CDS | 48976623 | 48976841 | 48976623 | ID=Msa0953140-mRNA-1:cds;Parent=Msa0953140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
