AlfalfaGEDB | Msa0954880

M. sativa cultivar zhongmu-4 / Msa0954880

KEGG: K08838|K20607
GO: GO:0000003 GO:0000160 GO:0000165 GO:0000187 GO:0000280 GO:0000910 GO:0001101 GO:0001932 GO:0001934 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007049 GO:0007112 GO:0007140 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007346 GO:0008150 GO:0008152 GO:0009524 GO:0009605 GO:0009607 GO:0009617 GO:0009653 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009791 GO:0009814 GO:0009864 GO:0009866 GO:0009867 GO:0009873 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031349 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033206 GO:0033554 GO:0033674 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042742 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045087 GO:0045088 GO:0045089 GO:0045859 GO:0045860 GO:0045937 GO:0048232 GO:0048285 GO:0048364 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048583 GO:0048584 GO:0048609 GO:0048646 GO:0048731 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051301 GO:0051321 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0060255 GO:0061640 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0080134 GO:0090696 GO:0090697 GO:0090698 GO:0097305 GO:0097306 GO:0098542 GO:0099402 GO:0140013 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1903046 GO:1905392 GO:1905393
PFAM: PF00069.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0954880	RHN77807.1	60.938	128	33	3	57	174	14	134	1.07e-37	138

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0954880	sp\|O80396\|M2K3_ARATH	89.130	46	5	0	57	102	193	238	1.02e-20	92.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0954880	MtrunA17_Chr1g0158721	60.938	128	33	3	57	174	14	134	9.80e-42	138
Msa0954880	MtrunA17_Chr4g0054501	84.375	64	9	1	57	119	14	77	4.57e-31	108
Msa0954880	MtrunA17_Chr6g0449691	95.652	46	2	0	57	102	194	239	3.91e-23	95.5
Msa0954880	MtrunA17_Chr2g0326461	82.500	40	3	1	143	182	1	36	2.01e-15	68.2
Msa0954880	MtrunA17_Chr6g0467451	77.500	40	9	0	143	182	1	40	1.18e-14	65.5
Msa0954880	MtrunA17_Chr3g0113101	82.222	45	8	0	12	56	29	73	2.60e-14	70.1
Msa0954880	MtrunA17_Chr6g0487231	62.222	45	17	0	57	101	177	221	1.58e-12	64.7
Msa0954880	MtrunA17_Chr4g0070851	58.140	43	18	0	57	99	178	220	1.56e-11	62.0
Msa0954880	MtrunA17_Chr2g0299991	53.488	43	20	0	57	99	178	220	4.32e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0954880	AT5G40440.4	89.130	46	5	57	102	193	238	1.03e-21	92.0
Msa0954880	AT5G40440.1	89.130	46	5	57	102	193	238	1.03e-21	92.0
Msa0954880	AT5G40440.6	89.130	46	5	57	102	175	220	1.09e-21	92.0
Msa0954880	AT5G40440.3	89.130	46	5	57	102	175	220	1.09e-21	92.0
Msa0954880	AT5G40440.2	89.130	46	5	57	102	175	220	1.09e-21	92.0
Msa0954880	AT5G40440.5	89.130	46	5	57	102	111	156	1.13e-21	91.7
Msa0954880	AT5G56580.1	64.444	45	16	56	100	178	222	4.16e-13	67.0
Msa0954880	AT4G29810.3	52.174	46	22	57	102	187	232	2.68e-11	61.6
Msa0954880	AT4G29810.1	52.174	46	22	57	102	178	223	3.13e-11	61.6
Msa0954880	AT4G29810.2	52.174	46	22	57	102	187	232	3.15e-11	61.6

Find 46 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGAAATCAACCCCTTTATT+TGG	0.169708	6_3:-57820064	Msa0954880:CDS
GAGCCGAAAATTACTGATTT+TGG	0.210770	6_3:-57818846	Msa0954880:CDS
TTTGCCAGGGCTTCTGCCCC+TGG	0.257698	6_3:-57817989	Msa0954880:CDS
GTCATAACCAAATGCGAAAT+TGG	0.262915	6_3:-57819980	Msa0954880:CDS
CTAAGAGATTCTCCAAATAA+AGG	0.281816	6_3:+57820052	None:intergenic
ACTGTCGCCAATTTCGCATT+TGG	0.348976	6_3:+57819973	None:intergenic
TAAGAGATTCTCCAAATAAA+GGG	0.353148	6_3:+57820053	None:intergenic
GTGCCAGGAGCGCATTTGCC+AGG	0.360341	6_3:-57818114	Msa0954880:CDS
ATGCAGAAAGCCTTGGCAAC+TGG	0.385037	6_3:+57818012	None:intergenic
TTTGCCAGGGGCAGAAGCCC+TGG	0.387044	6_3:+57817985	None:intergenic
TGCGCTCCTGGCACAAGCCC+TGG	0.394498	6_3:+57818123	None:intergenic
TTGGCAACTGGACGTTTGCC+AGG	0.412302	6_3:+57818024	None:intergenic
AATTTGCCAGGGGTTGAGCC+AGG	0.412442	6_3:-57818141	Msa0954880:intron
TTTGCTGGTGATTCTGCTCC+TGG	0.415327	6_3:-57818054	Msa0954880:CDS
GTTGAGCCAGGGCTTGTGCC+AGG	0.423934	6_3:-57818129	Msa0954880:CDS
TTTGCGATGAGCAGATTTGC+TGG	0.431395	6_3:-57818069	Msa0954880:CDS
ATGCGAAATTGGCGACAGTT+TGG	0.435500	6_3:-57819969	Msa0954880:intron
ATTTACTTGTAAATCTCAAA+GGG	0.447984	6_3:-57818869	Msa0954880:CDS
GCTCCTGGCAAATGCGCTCC+TGG	0.462158	6_3:+57818111	None:intergenic
TCAATTTACCGGTGCGGCTG+AGG	0.481484	6_3:+57821309	None:intergenic
TCTGCTCCTGGCAAAACTCC+TGG	0.482133	6_3:-57818042	Msa0954880:CDS
CCTGCCAGGGCTTTAGCTCC+TGG	0.485581	6_3:+57818096	None:intergenic
TCATCGCAAATGAACCTGCC+AGG	0.485862	6_3:+57818082	None:intergenic
GGAGTTCACCTCCGCCGCGT+TGG	0.486895	6_3:-57821338	Msa0954880:CDS
AGATTTACAAGTAAATTAGC+AGG	0.487423	6_3:+57818876	None:intergenic
GGCGAGCTCCAACGCGGCGG+AGG	0.498948	6_3:+57821330	None:intergenic
CCAGGAGCTAAAGCCCTGGC+AGG	0.502053	6_3:-57818096	Msa0954880:CDS
AATTTACTTGTAAATCTCAA+AGG	0.502420	6_3:-57818870	Msa0954880:CDS
AACGCGGCGGAGGTGAACTC+CGG	0.530650	6_3:+57821340	None:intergenic
GGAGCTCGCCTCAGCCGCAC+CGG	0.549208	6_3:-57821317	Msa0954880:intron
TGGCAAAATGCAGAAAGCCT+TGG	0.549930	6_3:+57818005	None:intergenic
CTTAGAGAATTCAGTTGCAG+TGG	0.554158	6_3:-57818811	Msa0954880:intron
CATCGCAAATGAACCTGCCA+GGG	0.561636	6_3:+57818083	None:intergenic
ATTTGCCAGGGGTTGAGCCA+GGG	0.565973	6_3:-57818140	Msa0954880:intron
TGGCAAACGTCCAGTTGCCA+AGG	0.569331	6_3:-57818022	Msa0954880:CDS
CGCGAATCAATTTACCGGTG+CGG	0.603687	6_3:+57821303	None:intergenic
TTTGCCAGGAGCTAAAGCCC+TGG	0.609134	6_3:-57818100	Msa0954880:CDS
AAGAGATTCTCCAAATAAAG+GGG	0.628743	6_3:+57820054	None:intergenic
GGCGGAGGTGAACTCCGGCA+TGG	0.629591	6_3:+57821345	None:intergenic
GGCTGAGGCGAGCTCCAACG+CGG	0.642046	6_3:+57821324	None:intergenic
TGAGGCGAGCTCCAACGCGG+CGG	0.647437	6_3:+57821327	None:intergenic
AAGGGTCTAAGTTATCTGCA+CGG	0.655190	6_3:-57818930	Msa0954880:CDS
AAGCTACTAGAAGTCCATGA+AGG	0.665741	6_3:-57817942	None:intergenic
TTTACTTGTAAATCTCAAAG+GGG	0.681294	6_3:-57818868	Msa0954880:CDS
AAAAGATGAGCAAGTCCGTG+TGG	0.685259	6_3:-57818546	Msa0954880:CDS
ACAGCTCAACAAGATCCACA+CGG	0.726849	6_3:+57818531	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAAAAAATTCAATTTGATTT+AGG	+	chr6_3:57818335-57818354	None:intergenic	10.0%
!!!	TCAATTTATTGTATTAATTT+TGG	-	chr6_3:57820838-57820857	Msa0954880:intron	10.0%
!!!	CAATTTATTGTATTAATTTT+GGG	-	chr6_3:57820839-57820858	Msa0954880:intron	10.0%
!!!	TCTTAAATTCATGAAAATTT+TGG	-	chr6_3:57818294-57818313	Msa0954880:intron	15.0%
!!!	CTTAAATTCATGAAAATTTT+GGG	-	chr6_3:57818295-57818314	Msa0954880:intron	15.0%
!!	TAATTATGAATATGATATCT+AGG	+	chr6_3:57818542-57818561	None:intergenic	15.0%
!!	TATATACTTATTTATTGTCA+TGG	-	chr6_3:57818703-57818722	Msa0954880:intron	15.0%
!!	TTCTACAAAATAATAATCAA+AGG	-	chr6_3:57819086-57819105	Msa0954880:intron	15.0%
!!!	GTTTTTTTAATCTTTTTGAA+GGG	-	chr6_3:57820340-57820359	Msa0954880:intron	15.0%
!!!	TTAGATAGATATTTCTTTTA+GGG	+	chr6_3:57820900-57820919	None:intergenic	15.0%
!!!	ATTAGATAGATATTTCTTTT+AGG	+	chr6_3:57820901-57820920	None:intergenic	15.0%
!!!	AATTTTTTTTCCTTTCCTTT+TGG	-	chr6_3:57818346-57818365	Msa0954880:intron	20.0%
!!	ATGTAACTTATCAAAAAGTA+AGG	-	chr6_3:57818502-57818521	Msa0954880:intron	20.0%
!!!	ACTAACATATTTTTGCAATT+AGG	-	chr6_3:57819195-57819214	Msa0954880:intron	20.0%
!!!	ATAAAAGTATCAGAATCTTA+CGG	+	chr6_3:57819538-57819557	None:intergenic	20.0%
!!	AAATTAAACAATACAACATG+TGG	-	chr6_3:57819614-57819633	Msa0954880:intron	20.0%
!!!	TTTCAATTTTAAACTTAGCA+TGG	-	chr6_3:57819641-57819660	Msa0954880:intron	20.0%
!!	AACATGAAACAATTATGATT+TGG	+	chr6_3:57820012-57820031	None:intergenic	20.0%
!!!	GGTTTTTTTAATCTTTTTGA+AGG	-	chr6_3:57820339-57820358	Msa0954880:intron	20.0%
!!	AATTTACTTGTAAATCTCAA+AGG	-	chr6_3:57820418-57820437	Msa0954880:intron	20.0%
!!	ATTTACTTGTAAATCTCAAA+GGG	-	chr6_3:57820419-57820438	Msa0954880:intron	20.0%
!!!	ATACCAAAATCAGTAATTTT+CGG	+	chr6_3:57820448-57820467	None:intergenic	20.0%
!!	ATGATTATTAGATAGATAGT+AGG	+	chr6_3:57820876-57820895	None:intergenic	20.0%
!	TTTGTTTAAGTAACAAAGAG+AGG	-	chr6_3:57818180-57818199	Msa0954880:intron	25.0%
!	TTGTTTAAGTAACAAAGAGA+GGG	-	chr6_3:57818181-57818200	Msa0954880:intron	25.0%
!	ACAATTCCCAAATTAATGTA+AGG	-	chr6_3:57818228-57818247	Msa0954880:intron	25.0%
!	GAAACTCCTTACATTAATTT+GGG	+	chr6_3:57818237-57818256	None:intergenic	25.0%
!	GGATTCATTAATAACAAAAG+TGG	+	chr6_3:57818259-57818278	None:intergenic	25.0%
!!	ATTAATGAATCCTTTTCTTC+TGG	-	chr6_3:57818267-57818286	Msa0954880:intron	25.0%
!!	TTAATGAATCCTTTTCTTCT+GGG	-	chr6_3:57818268-57818287	Msa0954880:intron	25.0%
!!!	ATTCATGAAAATTTTGGGTT+AGG	-	chr6_3:57818300-57818319	Msa0954880:intron	25.0%
!!	GGATTTCTAATCAGATTTTA+GGG	-	chr6_3:57818389-57818408	Msa0954880:intron	25.0%
!!!	TCTATTTTAGTTTTCAAGAC+AGG	-	chr6_3:57818471-57818490	Msa0954880:intron	25.0%
!!!	TAAATTCATGTTCTAAGGTT+AGG	+	chr6_3:57818834-57818853	None:intergenic	25.0%
!	GAGATTAAATTCATGTTCTA+AGG	+	chr6_3:57818839-57818858	None:intergenic	25.0%
!	CAACATGAATGATACATATT+TGG	-	chr6_3:57818911-57818930	Msa0954880:CDS	25.0%
!	TAAGAGATTCTCCAAATAAA+GGG	+	chr6_3:57819238-57819257	None:intergenic	25.0%
!!	GTTTATGCGTTATTAATTTG+TGG	-	chr6_3:57819718-57819737	Msa0954880:intron	25.0%
!	TGAAACATGGATGATAAAAT+AGG	+	chr6_3:57820124-57820143	None:intergenic	25.0%
!	AGATTTACAAGTAAATTAGC+AGG	+	chr6_3:57820415-57820434	None:intergenic	25.0%
!	TTTACTTGTAAATCTCAAAG+GGG	-	chr6_3:57820420-57820439	Msa0954880:intron	25.0%
	ATCGATAAACACTAAATCCT+TGG	+	chr6_3:57818110-57818129	None:intergenic	30.0%
	GTACACTTCAAAATCTCATT+TGG	-	chr6_3:57818133-57818152	Msa0954880:CDS	30.0%
	TTTGGGAATTGTTCAAATTC+TGG	+	chr6_3:57818220-57818239	None:intergenic	30.0%
	GGAAACTCCTTACATTAATT+TGG	+	chr6_3:57818238-57818257	None:intergenic	30.0%
	TTAAGATTACCCAGAAGAAA+AGG	+	chr6_3:57818280-57818299	None:intergenic	30.0%
!!!	ATGAAAATTTTGGGTTAGGT+GGG	-	chr6_3:57818304-57818323	Msa0954880:intron	30.0%
!	GGGATTTCTAATCAGATTTT+AGG	-	chr6_3:57818388-57818407	Msa0954880:intron	30.0%
	GTAGAGCAATAAATATGAGA+TGG	-	chr6_3:57818570-57818589	Msa0954880:intron	30.0%
!	CAATCATTGACTACAAGAAT+AGG	+	chr6_3:57818631-57818650	None:intergenic	30.0%
	CTATTCTTGTAGTCAATGAT+TGG	-	chr6_3:57818629-57818648	Msa0954880:intron	30.0%
	TGAATGATATACCTTACCTT+AGG	-	chr6_3:57818738-57818757	Msa0954880:intron	30.0%
!	CACTTTTATGATGCAAAGAA+AGG	-	chr6_3:57818874-57818893	Msa0954880:CDS	30.0%
	TTGAAATCAACCCCTTTATT+TGG	-	chr6_3:57819224-57819243	Msa0954880:intron	30.0%
	AAGAGATTCTCCAAATAAAG+GGG	+	chr6_3:57819237-57819256	None:intergenic	30.0%
	CTAAGAGATTCTCCAAATAA+AGG	+	chr6_3:57819239-57819258	None:intergenic	30.0%
!	AATCAACACTGAAGTTTTCA+AGG	-	chr6_3:57819270-57819289	Msa0954880:intron	30.0%
	ATACTTTCTATACCATGCAA+TGG	-	chr6_3:57819854-57819873	Msa0954880:intron	30.0%
!	ACTTATTCATGATAGCGTTA+AGG	-	chr6_3:57819904-57819923	Msa0954880:intron	30.0%
!	AATTGTTTCATGTTGACTGA+TGG	-	chr6_3:57820018-57820037	Msa0954880:CDS	30.0%
!	GTGATACTTTTGTGGAAATT+AGG	-	chr6_3:57820040-57820059	Msa0954880:CDS	30.0%
	TTTGTGGAAATTAGGAGATA+AGG	-	chr6_3:57820048-57820067	Msa0954880:CDS	30.0%
	ATGGATGATAAAATAGGTTC+AGG	+	chr6_3:57820118-57820137	None:intergenic	30.0%
	ATTGAGATATGCTACTAACT+TGG	-	chr6_3:57820314-57820333	Msa0954880:intron	30.0%
	GAAGTGCAATTTCTATCTAT+AGG	+	chr6_3:57820722-57820741	None:intergenic	30.0%
!	ATAGATAGTAGGCATTTTCA+TGG	+	chr6_3:57820865-57820884	None:intergenic	30.0%
!	AGAAATGTTACATTTTGCCA+GGG	+	chr6_3:57821319-57821338	None:intergenic	30.0%
!	AAGAAATGTTACATTTTGCC+AGG	+	chr6_3:57821320-57821339	None:intergenic	30.0%
	TAAATCCTTGGAACATACCT+TGG	+	chr6_3:57818098-57818117	None:intergenic	35.0%
!!!	CATGAAAATTTTGGGTTAGG+TGG	-	chr6_3:57818303-57818322	Msa0954880:intron	35.0%
!!	CAGATTTTAGGGACTTCTTA+CGG	-	chr6_3:57818400-57818419	Msa0954880:intron	35.0%
	CAATAAATATGAGATGGTGC+TGG	-	chr6_3:57818576-57818595	Msa0954880:intron	35.0%
!!	GTAATTAGACTCTAGAGTCT+AGG	-	chr6_3:57818947-57818966	Msa0954880:intron	35.0%
!	ATATGTCTCTCACTGTTTTC+AGG	-	chr6_3:57819026-57819045	Msa0954880:intron	35.0%
!	TATGTCTCTCACTGTTTTCA+GGG	-	chr6_3:57819027-57819046	Msa0954880:intron	35.0%
	GTCATAACCAAATGCGAAAT+TGG	-	chr6_3:57819308-57819327	Msa0954880:intron	35.0%
	GTAGTTGAATGAGTCTGTTT+GGG	-	chr6_3:57819369-57819388	Msa0954880:intron	35.0%
	TTTATGTGAGGAGAGAAGTT+TGG	+	chr6_3:57819404-57819423	None:intergenic	35.0%
	CATCAATAACTCATCTGCTT+CGG	-	chr6_3:57819506-57819525	Msa0954880:intron	35.0%
	ATCAATAACTCATCTGCTTC+GGG	-	chr6_3:57819507-57819526	Msa0954880:intron	35.0%
	TTAAACTTAGCATGGCTACT+AGG	-	chr6_3:57819649-57819668	Msa0954880:intron	35.0%
!	CATTAGTGAATCAAGTTGTC+TGG	+	chr6_3:57819749-57819768	None:intergenic	35.0%
!	TACCATGCAATGGTAGTTTT+AGG	-	chr6_3:57819864-57819883	Msa0954880:intron	35.0%
	GATCTGTCAAGCATTTAAGA+AGG	-	chr6_3:57819986-57820005	Msa0954880:CDS	35.0%
	AGATATGCTACTAACTTGGT+TGG	-	chr6_3:57820318-57820337	Msa0954880:intron	35.0%
!!!	GAGCCGAAAATTACTGATTT+TGG	-	chr6_3:57820442-57820461	Msa0954880:intron	35.0%
!!	ACTGATTTTGGTATTAGTGC+TGG	-	chr6_3:57820454-57820473	Msa0954880:intron	35.0%
!	AAATTCGTACACATTTTGCC+AGG	-	chr6_3:57821015-57821034	Msa0954880:intron	35.0%
!	AATTCGTACACATTTTGCCA+GGG	-	chr6_3:57821016-57821035	Msa0954880:intron	35.0%
!	GAAATGTTACATTTTGCCAG+GGG	+	chr6_3:57821318-57821337	None:intergenic	35.0%
	GGAGAAGATAGGCGATTAAA+TGG	+	chr6_3:57818012-57818031	None:intergenic	40.0%
	TTAATCGCCTATCTTCTCCT+TGG	-	chr6_3:57818013-57818032	Msa0954880:CDS	40.0%
	TCGGTAACAAACTTCGTTGA+CGG	-	chr6_3:57818044-57818063	Msa0954880:CDS	40.0%
	TTGGAACATACCTTGGTTCA+CGG	+	chr6_3:57818091-57818110	None:intergenic	40.0%
!	TGCATCATAAAAGTGTACGC+AGG	+	chr6_3:57818869-57818888	None:intergenic	40.0%
!	TCTAGAGTCTAGGTTCCAAA+TGG	-	chr6_3:57818957-57818976	Msa0954880:intron	40.0%
	CCATTAAACAGCTTGCCATT+TGG	+	chr6_3:57818975-57818994	None:intergenic	40.0%
	CCAAATGGCAAGCTGTTTAA+TGG	-	chr6_3:57818972-57818991	Msa0954880:intron	40.0%
	GCTGTTTAATGGAGTGAGTT+AGG	-	chr6_3:57818983-57819002	Msa0954880:intron	40.0%
	CGTAGTTGAATGAGTCTGTT+TGG	-	chr6_3:57819368-57819387	Msa0954880:intron	40.0%
	TTGTCACGAGTGTTTATGTG+AGG	+	chr6_3:57819416-57819435	None:intergenic	40.0%
	CTGAGAGTGAGAACAGATAA+TGG	+	chr6_3:57819476-57819495	None:intergenic	40.0%
!	TGGCTACTAGGTTTTCTTGA+TGG	-	chr6_3:57819661-57819680	Msa0954880:intron	40.0%
!	TGGTATTTGCTGCTGCTATT+TGG	-	chr6_3:57819681-57819700	Msa0954880:intron	40.0%
	GTCCTAAAACTACCATTGCA+TGG	+	chr6_3:57819869-57819888	None:intergenic	40.0%
!	TGATAGCGTTAAGGCATCAA+TGG	-	chr6_3:57819913-57819932	Msa0954880:intron	40.0%
!!	GACTGATGGTGATACTTTTG+TGG	-	chr6_3:57820032-57820051	Msa0954880:CDS	40.0%
!	ATGTGATGCACCTTGTTATG+AGG	-	chr6_3:57820076-57820095	Msa0954880:intron	40.0%
!	TGTGATGCACCTTGTTATGA+GGG	-	chr6_3:57820077-57820096	Msa0954880:intron	40.0%
	TCTACAAGACCCTCATAACA+AGG	+	chr6_3:57820089-57820108	None:intergenic	40.0%
	AAGGGTCTAAGTTATCTGCA+CGG	-	chr6_3:57820358-57820377	Msa0954880:intron	40.0%
	CTTAGAGAATTCAGTTGCAG+TGG	-	chr6_3:57820477-57820496	Msa0954880:intron	40.0%
	TGTGGAAGCAAATCAGTATG+TGG	+	chr6_3:57820548-57820567	None:intergenic	40.0%
	ACAGTCAAGCAAACAAAGTG+TGG	+	chr6_3:57820566-57820585	None:intergenic	40.0%
!	ATTCGTACACATTTTGCCAG+GGG	-	chr6_3:57821017-57821036	Msa0954880:intron	40.0%
	ATGGCCGCGAATCAATTTAC+CGG	+	chr6_3:57817993-57818012	None:intergenic	45.0%
	AAGCTCACCAAGGAGAAGAT+AGG	+	chr6_3:57818023-57818042	None:intergenic	45.0%
!	CTTCTCCTTGGTGAGCTTTT+CGG	-	chr6_3:57818025-57818044	Msa0954880:CDS	45.0%
	TGTTACCGAAAAGCTCACCA+AGG	+	chr6_3:57818033-57818052	None:intergenic	45.0%
	GTAACAAACTTCGTTGACGG+CGG	-	chr6_3:57818047-57818066	Msa0954880:CDS	45.0%
	GTGAACCAAGGTATGTTCCA+AGG	-	chr6_3:57818090-57818109	Msa0954880:CDS	45.0%
	TCTCACACGTCCAAAAGGAA+AGG	+	chr6_3:57818359-57818378	None:intergenic	45.0%
	TCTACTCTCACACGTCCAAA+AGG	+	chr6_3:57818364-57818383	None:intergenic	45.0%
	TGGACGTGTGAGAGTAGATT+TGG	-	chr6_3:57818366-57818385	Msa0954880:intron	45.0%
	GGACGTGTGAGAGTAGATTT+GGG	-	chr6_3:57818367-57818386	Msa0954880:intron	45.0%
	GACGTGTGAGAGTAGATTTG+GGG	-	chr6_3:57818368-57818387	Msa0954880:intron	45.0%
	TACCTTACCTTAGGACTGTC+TGG	-	chr6_3:57818747-57818766	Msa0954880:intron	45.0%
	TACCAGACAGTCCTAAGGTA+AGG	+	chr6_3:57818752-57818771	None:intergenic	45.0%
	TGGTAAGCCAATTCCAGCAA+TGG	-	chr6_3:57818767-57818786	Msa0954880:intron	45.0%
	TCGAAAGCCATTGCTGGAAT+TGG	+	chr6_3:57818777-57818796	None:intergenic	45.0%
!!	TCTCTCACTGTTTTCAGGGT+TGG	-	chr6_3:57819031-57819050	Msa0954880:intron	45.0%
!!	TCACTGTTTTCAGGGTTGGA+AGG	-	chr6_3:57819035-57819054	Msa0954880:intron	45.0%
	ACTGTCGCCAATTTCGCATT+TGG	+	chr6_3:57819318-57819337	None:intergenic	45.0%
	ATGCGAAATTGGCGACAGTT+TGG	-	chr6_3:57819319-57819338	Msa0954880:intron	45.0%
	ACTCGTGACAATTTCTGCGA+GGG	-	chr6_3:57819425-57819444	Msa0954880:intron	45.0%
!!	GCTGCTATTTGGTGCTCTAA+AGG	-	chr6_3:57819692-57819711	Msa0954880:intron	45.0%
	AAAAGATGAGCAAGTCCGTG+TGG	-	chr6_3:57820742-57820761	Msa0954880:intron	45.0%
	ACAGCTCAACAAGATCCACA+CGG	+	chr6_3:57820760-57820779	None:intergenic	45.0%
	CTTGTTGAGCTGTGAGAGAA+CGG	-	chr6_3:57820767-57820786	Msa0954880:intron	45.0%
	TTAACCCCTGGCAATGTTTC+TGG	-	chr6_3:57821040-57821059	Msa0954880:intron	45.0%
	ACATGCCAGAAACATTGCCA+GGG	+	chr6_3:57821048-57821067	None:intergenic	45.0%
	AACATGCCAGAAACATTGCC+AGG	+	chr6_3:57821049-57821068	None:intergenic	45.0%
!	CAACTTTTCTGACGTTGTGC+AGG	+	chr6_3:57821112-57821131	None:intergenic	45.0%
	CAAGCTGACACAATTTGCCA+GGG	-	chr6_3:57821136-57821155	Msa0954880:intron	45.0%
	AAGCTGACACAATTTGCCAG+GGG	-	chr6_3:57821137-57821156	Msa0954880:intron	45.0%
	TTTGCGATGAGCAGATTTGC+TGG	-	chr6_3:57821219-57821238	Msa0954880:intron	45.0%
	TGGCAAAATGCAGAAAGCCT+TGG	+	chr6_3:57821286-57821305	None:intergenic	45.0%
!	AAGGCTTTCTGCATTTTGCC+AGG	-	chr6_3:57821285-57821304	Msa0954880:intron	45.0%
!	AGGCTTTCTGCATTTTGCCA+GGG	-	chr6_3:57821286-57821305	Msa0954880:intron	45.0%
	CGCGAATCAATTTACCGGTG+CGG	+	chr6_3:57817988-57818007	None:intergenic	50.0%
!!	CGCACCGGTAAATTGATTCG+CGG	-	chr6_3:57817986-57818005	Msa0954880:CDS	50.0%
	GAACATACCTTGGTTCACGG+TGG	+	chr6_3:57818088-57818107	None:intergenic	50.0%
	TGGCTTACCAGACAGTCCTA+AGG	+	chr6_3:57818757-57818776	None:intergenic	50.0%
	TAGTGCTCGAAAGCCATTGC+TGG	+	chr6_3:57818783-57818802	None:intergenic	50.0%
	CACTCGTGACAATTTCTGCG+AGG	-	chr6_3:57819424-57819443	Msa0954880:intron	50.0%
!!	ACGTGGGAGCTTCTGAAACA+TGG	+	chr6_3:57820137-57820156	None:intergenic	50.0%
	TTCAGAAGCTCCCACGTGTA+AGG	-	chr6_3:57820140-57820159	Msa0954880:intron	50.0%
	CATGCCAGAAACATTGCCAG+GGG	+	chr6_3:57821047-57821066	None:intergenic	50.0%
	GGCAAATTGTGTCAGCTTGC+AGG	+	chr6_3:57821135-57821154	None:intergenic	50.0%
	GCAAGCTGACACAATTTGCC+AGG	-	chr6_3:57821135-57821154	Msa0954880:intron	50.0%
	CATCGCAAATGAACCTGCCA+GGG	+	chr6_3:57821208-57821227	None:intergenic	50.0%
	TCATCGCAAATGAACCTGCC+AGG	+	chr6_3:57821209-57821228	None:intergenic	50.0%
	TTTGCTGGTGATTCTGCTCC+TGG	-	chr6_3:57821234-57821253	Msa0954880:intron	50.0%
	ATGCAGAAAGCCTTGGCAAC+TGG	+	chr6_3:57821279-57821298	None:intergenic	50.0%
	TCAATTTACCGGTGCGGCTG+AGG	+	chr6_3:57817982-57818001	None:intergenic	55.0%
	ACAAACTTCGTTGACGGCGG+AGG	-	chr6_3:57818050-57818069	Msa0954880:CDS	55.0%
!	TTTTGCCAGGGGTTAACCCC+TGG	-	chr6_3:57821028-57821047	Msa0954880:intron	55.0%
	AATTTGCCAGGGGTTGAGCC+AGG	-	chr6_3:57821147-57821166	Msa0954880:intron	55.0%
	ATTTGCCAGGGGTTGAGCCA+GGG	-	chr6_3:57821148-57821167	Msa0954880:intron	55.0%
	TTTGCCAGGAGCTAAAGCCC+TGG	-	chr6_3:57821188-57821207	Msa0954880:intron	55.0%
	TCTGCTCCTGGCAAAACTCC+TGG	-	chr6_3:57821246-57821265	Msa0954880:intron	55.0%
!	CGTTTGCCAGGAGTTTTGCC+AGG	+	chr6_3:57821255-57821274	None:intergenic	55.0%
	TTGGCAACTGGACGTTTGCC+AGG	+	chr6_3:57821267-57821286	None:intergenic	55.0%
	TGGCAAACGTCCAGTTGCCA+AGG	-	chr6_3:57821266-57821285	Msa0954880:intron	55.0%
	CTTGGTTCACGGTGGCGTGA+GGG	+	chr6_3:57818080-57818099	None:intergenic	60.0%
	CATTGCCAGGGGTTAACCCC+TGG	+	chr6_3:57821036-57821055	None:intergenic	60.0%
	AACGCGGCGGAGGTGAACTC+CGG	+	chr6_3:57817951-57817970	None:intergenic	65.0%
	CCTTGGTTCACGGTGGCGTG+AGG	+	chr6_3:57818081-57818100	None:intergenic	65.0%
	CCTCACGCCACCGTGAACCA+AGG	-	chr6_3:57818078-57818097	Msa0954880:CDS	65.0%
	ACAAGCCCTGGCTCAACCCC+TGG	+	chr6_3:57821156-57821175	None:intergenic	65.0%
	GTTGAGCCAGGGCTTGTGCC+AGG	-	chr6_3:57821159-57821178	Msa0954880:intron	65.0%
!	GTGCCAGGAGCGCATTTGCC+AGG	-	chr6_3:57821174-57821193	Msa0954880:intron	65.0%
	GCTCCTGGCAAATGCGCTCC+TGG	+	chr6_3:57821180-57821199	None:intergenic	65.0%
!	CCTGCCAGGGCTTTAGCTCC+TGG	+	chr6_3:57821195-57821214	None:intergenic	65.0%
	CCAGGAGCTAAAGCCCTGGC+AGG	-	chr6_3:57821192-57821211	Msa0954880:intron	65.0%
	TTTGCCAGGGCTTCTGCCCC+TGG	-	chr6_3:57821299-57821318	Msa0954880:intron	65.0%
	TTTGCCAGGGGCAGAAGCCC+TGG	+	chr6_3:57821306-57821325	None:intergenic	65.0%
	GGAGTTCACCTCCGCCGCGT+TGG	-	chr6_3:57817950-57817969	Msa0954880:CDS	70.0%
	TGAGGCGAGCTCCAACGCGG+CGG	+	chr6_3:57817964-57817983	None:intergenic	70.0%
	GGCTGAGGCGAGCTCCAACG+CGG	+	chr6_3:57817967-57817986	None:intergenic	70.0%
	TGCGCTCCTGGCACAAGCCC+TGG	+	chr6_3:57821168-57821187	None:intergenic	70.0%
	GGAGCTCGCCTCAGCCGCAC+CGG	-	chr6_3:57817971-57817990	Msa0954880:CDS	75.0%
!	GGCGAGCTCCAACGCGGCGG+AGG	+	chr6_3:57817961-57817980	None:intergenic	80.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	57817945	57821365	57817945	ID=Msa0954880;Name=Msa0954880
chr6_3	mRNA	57817945	57821365	57817945	ID=Msa0954880-mRNA-1;Parent=Msa0954880;Name=Msa0954880-mRNA-1;_AED=0.57;_eAED=0.66;_QI=0\|0\|0\|0.6\|1\|1\|5\|0\|188
chr6_3	exon	57821318	57821365	57821318	ID=Msa0954880-mRNA-1:exon:11525;Parent=Msa0954880-mRNA-1
chr6_3	exon	57819970	57820089	57819970	ID=Msa0954880-mRNA-1:exon:11524;Parent=Msa0954880-mRNA-1
chr6_3	exon	57818812	57818949	57818812	ID=Msa0954880-mRNA-1:exon:11523;Parent=Msa0954880-mRNA-1
chr6_3	exon	57818533	57818584	57818533	ID=Msa0954880-mRNA-1:exon:11522;Parent=Msa0954880-mRNA-1
chr6_3	exon	57817945	57818153	57817945	ID=Msa0954880-mRNA-1:exon:11521;Parent=Msa0954880-mRNA-1
chr6_3	CDS	57821318	57821365	57821318	ID=Msa0954880-mRNA-1:cds;Parent=Msa0954880-mRNA-1
chr6_3	CDS	57819970	57820089	57819970	ID=Msa0954880-mRNA-1:cds;Parent=Msa0954880-mRNA-1
chr6_3	CDS	57818812	57818949	57818812	ID=Msa0954880-mRNA-1:cds;Parent=Msa0954880-mRNA-1
chr6_3	CDS	57818533	57818584	57818533	ID=Msa0954880-mRNA-1:cds;Parent=Msa0954880-mRNA-1
chr6_3	CDS	57817945	57818153	57817945	ID=Msa0954880-mRNA-1:cds;Parent=Msa0954880-mRNA-1

Gene Sequence

>Msa0954880

ATGCCGGAGTTCACCTCCGCCGCGTTGGAGCTCGCCTCAGCCGCACCGAGTTTGAAATCAACCCCTTTATTTGGAGAATCTCTTAGAGCGTCATCAAAATCAACACTGAAGTTTTCAAGGACAATGAGTACTTCAGTCATAACCAAATGCGAAATTGGCGACAGTTTGGGTCTAAGTTATCTGCACGGAGTCAGATATTTAGTTCACAAAGACATAAAGCCTGCTAATTTACTTGTAAATCTCAAAGGGGAGCCGAAAATTACTGATTTTGGTATTAGTGCTGGCTTAGAGAATTCAGTTGCAGTGATAGAAATTGCACTTCAAAAGATGAGCAAGTCCGTGTGGATCTTGTTGAGCTGGGTTGAGCCAGGGCTTGTGCCAGGAGCGCATTTGCCAGGAGCTAAAGCCCTGGCAGGTTCATTTGCGATGAGCAGATTTGCTGGTGATTCTGCTCCTGGCAAAACTCCTGGCAAACGTCCAGTTGCCAAGGCTTTCTGCATTTTGCCAGGGCTTCTGCCCCTGGCAAAATGTAACATTTCTTGTAGTGAAGCTACTAGAAGTCCATGA

Protein sequence

>Msa0954880

MPEFTSAALELASAAPSLKSTPLFGESLRASSKSTLKFSRTMSTSVITKCEIGDSLGLSYLHGVRYLVHKDIKPANLLVNLKGEPKITDFGISAGLENSVAVIEIALQKMSKSVWILLSWVEPGLVPGAHLPGAKALAGSFAMSRFAGDSAPGKTPGKRPVAKAFCILPGLLPLAKCNISCSEATRSP*