AlfalfaGEDB | Msa0955510

M. sativa cultivar zhongmu-4 / Msa0955510

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955510	XP_003619518.1	85.512	283	26	1	1	268	1	283	2.50e-174	492

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955510	sp\|Q9M0K4\|LAF1_ARATH	52.308	195	62	6	13	185	9	194	3.68e-60	195

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0955510	TF	MYB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955510	MtrunA17_Chr6g0470971	85.512	283	26	1	1	268	1	283	2.30e-178	492
Msa0955510	MtrunA17_Chr1g0203441	54.255	282	105	7	1	268	1	272	1.02e-92	275
Msa0955510	MtrunA17_Chr1g0211161	73.636	110	29	0	11	120	10	119	7.49e-54	174
Msa0955510	MtrunA17_Chr4g0058631	48.649	185	90	3	11	191	9	192	1.50e-52	174
Msa0955510	MtrunA17_Chr3g0117091	60.714	140	48	1	11	143	9	148	2.17e-52	174
Msa0955510	MtrunA17_Chr1g0193371	73.832	107	28	0	11	117	9	115	2.43e-52	174
Msa0955510	MtrunA17_Chr7g0270891	72.897	107	29	0	11	117	9	115	2.94e-51	171
Msa0955510	MtrunA17_Chr1g0193801	71.963	107	30	0	11	117	9	115	1.18e-50	170
Msa0955510	MtrunA17_Chr7g0271241	74.257	101	26	0	11	111	9	109	7.24e-50	168
Msa0955510	MtrunA17_Chr2g0330041	61.667	120	46	0	11	130	9	128	2.09e-48	165

Showing 1 to 10 of 163 entries

Previous1 2 3 4 5…17Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0955510	AT4G25560.1	52.308	195	62	6	13	185	9	194	3.74e-61	195
Msa0955510	AT5G52260.1	53.158	190	71	2	10	185	8	193	2.52e-60	192
Msa0955510	AT3G48920.1	44.223	251	107	8	11	253	15	240	1.02e-57	185
Msa0955510	AT4G01680.3	73.832	107	28	0	11	117	9	115	1.01e-51	169
Msa0955510	AT5G26660.1	72.897	107	29	0	11	117	9	115	1.60e-51	172
Msa0955510	AT1G57560.1	70.000	110	33	0	11	120	9	118	3.54e-51	170
Msa0955510	AT1G57560.2	70.000	110	33	0	11	120	9	118	4.85e-51	169
Msa0955510	AT4G01680.1	73.832	107	28	0	11	117	9	115	5.83e-51	170
Msa0955510	AT1G09540.1	71.028	107	31	0	11	117	9	115	3.41e-49	166
Msa0955510	AT5G12870.1	65.179	112	39	0	13	124	17	128	1.23e-47	160

Showing 1 to 10 of 209 entries

Previous1 2 3 4 5…21Next

Find 38 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTATTCAAATGCCAGA+AGG	0.548828	6_3:-59982790	Msa0955510:CDS
AAGAAACTCACCAGCTTTAA+TGG	0.227212	6_3:+59985589	None:intergenic
AATTCAAAATCTAGATACTG+AGG	0.628820	6_3:-59982737	Msa0955510:CDS
ACATTATTCAAATGCCAGAA+GGG	0.608741	6_3:-59982789	Msa0955510:CDS
ACCAAAATCAAAATACAGAA+AGG	0.483708	6_3:-59985690	Msa0955510:CDS
AGAAACTCACCAGCTTTAAT+GGG	0.371716	6_3:+59985590	None:intergenic
AGCATACCTCTCTTTAATCC+TGG	0.484900	6_3:+59984540	None:intergenic
AGCGCTGTCCCCATTAAAGC+TGG	0.570808	6_3:-59985599	Msa0955510:intron
AGGTATGCTCAGCAAACATG+AGG	0.642467	6_3:-59984526	Msa0955510:CDS
AGTGATTATATAATGAAGCA+TGG	0.618334	6_3:-59985635	Msa0955510:CDS

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAAAATACAGAAAGGGATTA+TGG	-	chr6_3:59982685-59982704	Msa0955510:CDS	30.0%
TACAACAATCTCAAATTCAC+CGG	+	chr6_3:59983000-59983019	None:intergenic	30.0%
AAAATCAAGGAATGATAAGG+AGG	-	chr6_3:59983121-59983140	Msa0955510:CDS	30.0%
AACTCTTAGTAGCATCAAAA+GGG	+	chr6_3:59983527-59983546	None:intergenic	30.0%
AACTAATCTCATCCAATGTT+TGG	-	chr6_3:59983653-59983672	Msa0955510:intron	30.0%
CACTCAGAAAATAAAAGTCT+TGG	+	chr6_3:59985460-59985479	None:intergenic	30.0%
AACATTATTCAAATGCCAGA+AGG	-	chr6_3:59985577-59985596	Msa0955510:intron	30.0%
ACATTATTCAAATGCCAGAA+GGG	-	chr6_3:59985578-59985597	Msa0955510:intron	30.0%
TTTGATGCTACTAAGAGTTG+AGG	-	chr6_3:59983331-59983350	Msa0955510:intron	35.0%
TTGATGCTACTAAGAGTTGA+GGG	-	chr6_3:59983332-59983351	Msa0955510:intron	35.0%

Showing 1 to 10 of 188 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	59982651	59985738	59982651	ID=Msa0955510;Name=Msa0955510
chr6_3	mRNA	59982651	59985738	59982651	ID=Msa0955510-mRNA-1;Parent=Msa0955510;Name=Msa0955510-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0\|1\|1\|1\|3\|0\|268
chr6_3	exon	59985600	59985738	59985600	ID=Msa0955510-mRNA-1:exon:11803;Parent=Msa0955510-mRNA-1
chr6_3	exon	59984486	59984615	59984486	ID=Msa0955510-mRNA-1:exon:11802;Parent=Msa0955510-mRNA-1
chr6_3	exon	59982651	59983188	59982651	ID=Msa0955510-mRNA-1:exon:11801;Parent=Msa0955510-mRNA-1
chr6_3	CDS	59985600	59985738	59985600	ID=Msa0955510-mRNA-1:cds;Parent=Msa0955510-mRNA-1
chr6_3	CDS	59984486	59984615	59984486	ID=Msa0955510-mRNA-1:cds;Parent=Msa0955510-mRNA-1
chr6_3	CDS	59982651	59983188	59982651	ID=Msa0955510-mRNA-1:cds;Parent=Msa0955510-mRNA-1

Gene Sequence

>Msa0955510

ATGGGATTTCAGCTAGCAGAAAAAGTACCAAAATCAAAATACAGAAAGGGATTATGGTCACCTGAAGAAGATGACAAGCTCAGTGATTATATAATGAAGCATGGTCATAGCTGCTGGAGCGCTGTCCCCATTAAAGCTGGCTTGCAAAGGAATGGAAAGAGTTGCAGACTAAGGTGGATTAACTACCTGAGACCAGGATTAAAGAGAGGTATGCTCAGCAAACATGAGGAAGATAAAATCATGACCCTTCACCACATGTTAGGAAACAAGTGGTCTCAGATTGCACAACAATTGCCAGGAAGGACCGACAACGAGATTAAAAATTATTGGCATTCATATCTGAAAAAGAAAGAAGTCAAAAGTGATGATACAATGAACTCCTTACTCTCAACTCAAAAACATGAAATTCAAGATCCTAAATATGTGTTGTTAGAAAACATTAACAAATCAACAGCTACAACACACTCTGATCAATATATTTCAAAGAATTATAACACTGCCAATGAAGTTTGTCAAAGCTCATTACCAAGACTTTTATTTTCTGAGTGGCTCTCACTAGATCAAGTAAACTGTGGCAGCTCTCTAAATTCAGATGATTTTTTGGTCTTGAAAAATGGCTATGATCAAAATTTAATTTTTCAAGAAAACATTATTCAAATGCCAGAAGGGCAGTTTGGTGAAGAGTATCATGATAGTTTAATTCAAAATCTAGATACTGAGGTGTACTACTCACTGGATCAGTTATCAAATCAAGTGGATGAAAATGAATTGATCCACTATCTGAACAATGATGGAATGTATGTATGA

Protein sequence

>Msa0955510

MGFQLAEKVPKSKYRKGLWSPEEDDKLSDYIMKHGHSCWSAVPIKAGLQRNGKSCRLRWINYLRPGLKRGMLSKHEEDKIMTLHHMLGNKWSQIAQQLPGRTDNEIKNYWHSYLKKKEVKSDDTMNSLLSTQKHEIQDPKYVLLENINKSTATTHSDQYISKNYNTANEVCQSSLPRLLFSEWLSLDQVNCGSSLNSDDFLVLKNGYDQNLIFQENIIQMPEGQFGEEYHDSLIQNLDTEVYYSLDQLSNQVDENELIHYLNNDGMYV*