AlfalfaGEDB | Msa0956490

M. sativa cultivar zhongmu-4 / Msa0956490

KEGG: K09338
GO: -
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0956490	XP_013442370.2	95.629	755	33	0	1	755	15	769	0.0	1446

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0956490	sp\|Q0WV12\|ANL2_ARATH	50.938	746	319	13	12	751	94	798	0.0	723

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0956490	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0956490	MtrunA17_Chr6g0472471	95.629	755	33	0	1	755	15	769	0.0	1446
Msa0956490	MtrunA17_Chr1g0203671	58.431	765	293	12	1	753	40	791	0.0	881
Msa0956490	MtrunA17_Chr7g0246631	52.618	764	308	18	9	751	44	774	0.0	786
Msa0956490	MtrunA17_Chr8g0350321	53.004	749	323	12	13	751	77	806	0.0	775
Msa0956490	MtrunA17_Chr4g0024351	43.935	742	365	13	21	751	28	729	0.0	605
Msa0956490	MtrunA17_Chr2g0322731	43.860	741	364	14	21	751	67	765	0.0	602
Msa0956490	MtrunA17_Chr5g0410711	40.897	736	403	15	28	751	63	778	0.0	546
Msa0956490	MtrunA17_Chr6g0481041	41.655	713	384	13	54	751	28	723	0.0	538
Msa0956490	MtrunA17_Chr2g0331581	38.527	706	362	11	59	751	143	789	1.77e-168	505
Msa0956490	MtrunA17_Chr5g0394111	34.566	703	351	12	62	751	40	646	1.70e-132	407

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0956490	AT4G00730.1	50.938	746	319	13	12	751	94	798	723
Msa0956490	AT3G61150.1	50.000	742	340	13	23	751	80	803	719
Msa0956490	AT5G52170.3	47.574	742	311	15	16	755	17	682	644
Msa0956490	AT5G52170.1	47.574	742	311	15	16	755	17	682	644
Msa0956490	AT5G52170.2	47.185	746	313	15	16	755	17	687	640
Msa0956490	AT4G04890.2	45.020	753	357	15	15	751	24	735	631
Msa0956490	AT4G04890.1	45.020	753	357	15	15	751	24	735	631
Msa0956490	AT4G21750.2	44.575	765	367	15	15	752	24	758	615
Msa0956490	AT4G21750.1	44.575	765	367	15	15	752	24	758	615
Msa0956490	AT4G21750.3	44.575	765	367	15	15	752	24	758	615

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Find 216 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTCCAGGAATTGCT+GGG	0.583398	6_3:+63826393	None:intergenic
AAATCAAACACCCTTTGCCG+AGG	0.632804	6_3:+63824149	None:intergenic
AACAAATTCAGGAACTCGAA+AGG	0.602744	6_3:-63827443	Msa0956490:intron
AACAAATTTGCATACCTGTG+GGG	0.645738	6_3:+63824592	None:intergenic
AACACCCTTTGCCGAGGCAA+CGG	0.542039	6_3:+63824155	None:intergenic
AACTTTGATTCTGGTTTGCT+TGG	0.372370	6_3:-63827600	Msa0956490:CDS
AAGAAAATGGAAGGACATGT+TGG	0.514124	6_3:-63827642	None:intergenic
AATCAACAGTGCAGGTCTTG+TGG	0.541045	6_3:-63825862	Msa0956490:CDS
AATCCGACATGCAGCAATTG+CGG	0.597113	6_3:-63826419	Msa0956490:CDS
AATGGAAGGACATGTTGGAA+TGG	0.553146	6_3:-63827637	Msa0956490:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGTCTGTAATATGTTCG+GGG	-	chr6_3:63823629-63823648	Msa0956490:CDS	30.0%
TCAATTAGTTCAGTTTGGTT+TGG	+	chr6_3:63823687-63823706	None:intergenic	30.0%
ACGACTTAGACATTGTTTAT+AGG	-	chr6_3:63824035-63824054	Msa0956490:CDS	30.0%
ACGACTTAGACATTGTTTAT+AGG	-	chr6_3:63824035-63824054	Msa0956490:CDS	30.0%
TGTCAATCAATCATAATCGT+TGG	-	chr6_3:63824160-63824179	Msa0956490:CDS	30.0%
ATTTGGATTTGGCATAGTTA+TGG	+	chr6_3:63824676-63824695	None:intergenic	30.0%
TTTAACGATCCGAAACAAAA+CGG	-	chr6_3:63825008-63825027	Msa0956490:intron	30.0%
AAGTCAAAGATTAACAGTTC+TGG	+	chr6_3:63825955-63825974	None:intergenic	30.0%
TAACAAATTTGCATACCTGT+GGG	+	chr6_3:63826344-63826363	None:intergenic	30.0%
ATAACAAATTTGCATACCTG+TGG	+	chr6_3:63826345-63826364	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	63823296	63827658	63823296	ID=Msa0956490;Name=Msa0956490
chr6_3	mRNA	63823296	63827658	63823296	ID=Msa0956490-mRNA-1;Parent=Msa0956490;Name=Msa0956490-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0\|0\|1\|1\|1\|8\|0\|755
chr6_3	exon	63827444	63827658	63827444	ID=Msa0956490-mRNA-1:exon:12195;Parent=Msa0956490-mRNA-1
chr6_3	exon	63826988	63827105	63826988	ID=Msa0956490-mRNA-1:exon:12194;Parent=Msa0956490-mRNA-1
chr6_3	exon	63825845	63826531	63825845	ID=Msa0956490-mRNA-1:exon:12193;Parent=Msa0956490-mRNA-1
chr6_3	exon	63825626	63825727	63825626	ID=Msa0956490-mRNA-1:exon:12192;Parent=Msa0956490-mRNA-1
chr6_3	exon	63825327	63825539	63825327	ID=Msa0956490-mRNA-1:exon:12191;Parent=Msa0956490-mRNA-1
chr6_3	exon	63824607	63824772	63824607	ID=Msa0956490-mRNA-1:exon:12190;Parent=Msa0956490-mRNA-1
chr6_3	exon	63824022	63824386	63824022	ID=Msa0956490-mRNA-1:exon:12189;Parent=Msa0956490-mRNA-1
chr6_3	exon	63823296	63823697	63823296	ID=Msa0956490-mRNA-1:exon:12188;Parent=Msa0956490-mRNA-1
chr6_3	CDS	63827444	63827658	63827444	ID=Msa0956490-mRNA-1:cds;Parent=Msa0956490-mRNA-1
chr6_3	CDS	63826988	63827105	63826988	ID=Msa0956490-mRNA-1:cds;Parent=Msa0956490-mRNA-1
chr6_3	CDS	63825845	63826531	63825845	ID=Msa0956490-mRNA-1:cds;Parent=Msa0956490-mRNA-1
chr6_3	CDS	63825626	63825727	63825626	ID=Msa0956490-mRNA-1:cds;Parent=Msa0956490-mRNA-1
chr6_3	CDS	63825327	63825539	63825327	ID=Msa0956490-mRNA-1:cds;Parent=Msa0956490-mRNA-1
chr6_3	CDS	63824607	63824772	63824607	ID=Msa0956490-mRNA-1:cds;Parent=Msa0956490-mRNA-1
chr6_3	CDS	63824022	63824386	63824022	ID=Msa0956490-mRNA-1:cds;Parent=Msa0956490-mRNA-1
chr6_3	CDS	63823296	63823697	63823296	ID=Msa0956490-mRNA-1:cds;Parent=Msa0956490-mRNA-1

Gene Sequence

>Msa0956490

ATGGAAGGACATGTTGGAATGGGACTTATTGGAGAGAACTTTGATTCTGGTTTGCTTGGAAGGTTGAGGGATGATGACTATGAAAGCAGGTCTGGAAGTGAGAATTTTGATGATTTTTCTGGTGATGACCTTGATGCTGCTGATGATCAGCCAAAGAGCAAGAAGAAGAAGAAATATCATAGGCACACTCCTCAACAAATTCAGGAACTCGAAAGTTTCTTCAAGGAGTGTCCACATCCTGATGAGAAGCAAAGAACTGACCTTAGCAAGAAGCTTGGTTTGGCGAACAAGCAAGTCAAGTTCTGGTTTCAGAATCGCCGAACTCAGATGAAGACGCAACTGGAACGCCATGAGAATATGATTCTGAGGCAGGAAAATGAGAGGCTCCGAGCTGAGAACAGTTTGTTGAAAGATGCTGTGTCAAATCCGACATGCAGCAATTGCGGTGGCCCAGCAATTCCTGGACAATTTTCACCGGAGGACCACCAGCTTAGGGTTGAAAATGCCAGACTGAAAGAGGAATTGGGCCGAGTGTCTACCTTGACCCACAAGTTCTTCGGCCGACCAGTCTCGGCATTTGCCTCCATAACTATGCCAAATCCAAATTCTGGCTTCGAACTTGGTATGGGAAGGAATGGTGTTGTTGGTCCAAGCAATTTCAACATGTCGCTGCCGATGGGATTTGGTATGGGAGACGGAGTTATGGGAGCTCCAGCGCTACAATCTGGATTGCAATCACCAATGGGAATGATCGGAAATAGTGCTCAGCAGGAGAGAGCTATGCTTATTGATCTTGCAGGAGCTGCTATGGATGAACTAATCAGTATGTCTCAGCCGGATTCTCCTCTCTGGATTAAGAGTTTGGATGGTGTGAATGAAGTGCTGAACTATGAAGAGTATGCAAAGATCAATTCTCCTTTTAACGATCCGAAACAAAACGGTTTTCTAACTGAAGCTACAAGACAAACTGGACTGTTATTAATCAACAGTGCAGGTCTTGTGGAAACGATGTTGGATGCGGATCAGTGGGCAGAGATGTTTCCATGTATGATTGCTGGAGCTTCAACCTTGGATGTCATATCTAGTGGAATGAATGGAACCAGGAGTGGATCTTTGCAAGTGATGCAAGCCGAGGTTCAAGTGCCTTCTCCATTAGTGCCGGTTCGACAATATAGCTTCCTCAGGTTTGCAAAGCAGCATGTCGGAGGCATTTGGGTTGTGGTTGATGTTTCAGTCAACGTCGGCCGTAATGCTGCTAATGGAAACACTTACATGAGCTGTAAGAAGCTTCCTTCTGGCTGTATTTTGGAGGATTTGCCCAATGGTTTTTGCAAGGTTACTTGGGTTGATCATTCCCAATATGATGAGAGTGTTGTCCACCAAGCCTATCGTCCATTGGTTAATTCTGGCAATGCATTTGGTGCTCATCGATGGGTTGCAACTCTCCAGAGGAAGTGTGATTCCCTCGCAGTCCTCATGTCACAGTCTGATGACCCCACAGCCATGACTCCACATGGTAAGAAAAGCATGCTGAAGCTCGCGCAGAGGATGTCGGATTACTTCTGGTCGGGAATCTGTCCTTCGAGTGCGTGCAAGTGGGAGATCCTTCCCATTAGTAACATGGGCGACAGTGACATGAAAATCATGTATCGGCAACATCCAGATGCCACTTCTAGCATCGTGCTAAGTGCTGCAACTTCTGTGTGGATTCCGTTGCCTCGGCAAAGGGTGTTTGATTTTCTCCGTGAGGCACAAATGAGAGGCGAGTGGGATGCTTTGTCCAATGGTGGACCAATGCAGGAGGTGGTCCACATTGCTAAAGGACAAGCTCTTGGAAATTCCATTTCTATTCTTAGTGTCAACAATGCTGTGAATCCGACTGGAAACGAGGGAAGCAGTCTATACCTGCAAGACTCATGGACCGATAGCTCTGGCTCTATGGTCGTGTACTCACCAATCGATTCACAATCCTTGGACATCGTGATCAGTGGTGGAGAGTCTTCATTGGTTCCTCTTTTACCTTCCGGCTTTTCAATTCTTCCGGACGGCCATTCAAACGTCAACAATATCGTTGGAACTTCAAGTGACGGTAGCGGCGGCAATGGCGAGGGCGGAGACAATGGTGGATGCTTGCTGACATTTGGATTACAAATGCTGCTGAACAACACTCAGACAAGTAAGCTCACAATGGAGTCAGTTGAGTCTGTCAATGCACAAATCTCAGTGACCATTCAGAGAATCAAAGATGCACTTGGAGTTGTTGCATGA

Protein sequence

>Msa0956490

MEGHVGMGLIGENFDSGLLGRLRDDDYESRSGSENFDDFSGDDLDAADDQPKSKKKKKYHRHTPQQIQELESFFKECPHPDEKQRTDLSKKLGLANKQVKFWFQNRRTQMKTQLERHENMILRQENERLRAENSLLKDAVSNPTCSNCGGPAIPGQFSPEDHQLRVENARLKEELGRVSTLTHKFFGRPVSAFASITMPNPNSGFELGMGRNGVVGPSNFNMSLPMGFGMGDGVMGAPALQSGLQSPMGMIGNSAQQERAMLIDLAGAAMDELISMSQPDSPLWIKSLDGVNEVLNYEEYAKINSPFNDPKQNGFLTEATRQTGLLLINSAGLVETMLDADQWAEMFPCMIAGASTLDVISSGMNGTRSGSLQVMQAEVQVPSPLVPVRQYSFLRFAKQHVGGIWVVVDVSVNVGRNAANGNTYMSCKKLPSGCILEDLPNGFCKVTWVDHSQYDESVVHQAYRPLVNSGNAFGAHRWVATLQRKCDSLAVLMSQSDDPTAMTPHGKKSMLKLAQRMSDYFWSGICPSSACKWEILPISNMGDSDMKIMYRQHPDATSSIVLSAATSVWIPLPRQRVFDFLREAQMRGEWDALSNGGPMQEVVHIAKGQALGNSISILSVNNAVNPTGNEGSSLYLQDSWTDSSGSMVVYSPIDSQSLDIVISGGESSLVPLLPSGFSILPDGHSNVNNIVGTSSDGSGGNGEGGDNGGCLLTFGLQMLLNNTQTSKLTMESVESVNAQISVTIQRIKDALGVVA*