AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0956990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0956990 MtrunA17_Chr1g0203051 33.010 206 129 2 98 295 22 226 9.35e-36 139
Msa0956990 MtrunA17_Chr8g0389811 33.333 216 128 2 54 269 6 205 1.31e-35 130
Msa0956990 MtrunA17_Chr1g0171741 34.222 225 123 5 50 274 59 258 1.14e-34 130
Msa0956990 MtrunA17_Chr2g0331371 47.183 142 71 1 112 253 23 160 1.54e-32 122
Msa0956990 MtrunA17_Chr2g0308841 64.103 78 28 0 291 368 149 226 1.28e-29 116
Msa0956990 MtrunA17_Chr6g0473421 45.536 112 57 1 112 223 23 130 5.06e-26 103
Msa0956990 MtrunA17_Chr1g0172931 43.269 104 59 0 127 230 55 158 4.62e-24 97.8
Msa0956990 MtrunA17_Chr2g0287651 32.026 153 104 0 139 291 66 218 1.25e-21 98.2
Msa0956990 MtrunA17_Chr6g0458391 28.444 225 137 10 59 274 5 214 5.11e-13 71.2
Msa0956990 MtrunA17_Chr6g0458391 34.247 146 78 6 133 269 208 344 1.42e-11 66.6
Msa0956990 MtrunA17_Chr1g0203721 26.636 214 116 10 86 283 10 198 1.58e-12 69.7
Msa0956990 MtrunA17_Chr5g0448761 33.333 144 94 2 150 291 62 205 3.09e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0956990 AT5G28530.1 36.975 119 72 2 154 270 61 178 3.43e-14 75.1
Msa0956990 AT5G28530.3 36.975 119 72 2 154 270 61 178 3.54e-14 75.1
Msa0956990 AT5G28530.2 36.975 119 72 2 154 270 61 178 3.54e-14 75.1
Msa0956990 AT5G28530.4 36.975 119 72 2 154 270 61 178 3.69e-14 75.1
Msa0956990 AT5G28530.5 36.975 119 72 2 154 270 61 178 4.23e-14 74.7

Find 94 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACACCTGGTATCATTTC+TGG 0.155992 6_3:+66569568 None:intergenic
ACACAAATGGTTCACAATAT+TGG 0.219824 6_3:-66568084 Msa0956990:CDS
CTTTGCTTGGTTTGGATCTC+AGG 0.254922 6_3:+66571000 None:intergenic
CACAAATGGTTCACAATATT+GGG 0.257023 6_3:-66568083 Msa0956990:CDS
TCCCTTAGCTTTGCTTGGTT+TGG 0.257469 6_3:+66570992 None:intergenic
ATTTCAAATGTTCGTGTCTT+AGG 0.296750 6_3:-66568237 Msa0956990:CDS
GGGAATGCTATAGTCATAAA+TGG 0.304640 6_3:-66569839 Msa0956990:CDS
TTGTTGATTCAGGGAGTAGA+AGG 0.319961 6_3:-66570159 Msa0956990:intron
CCTGTGTAAAACTAGATTCT+TGG 0.335728 6_3:+66568144 None:intergenic
ATTGCACCATACGTTTGATA+TGG 0.351243 6_3:+66569362 None:intergenic
CCAAGTTCTGAGGGACCGTT+TGG 0.359223 6_3:-66569678 Msa0956990:CDS
AAGGGACTCTTTGTGTTGTT+AGG 0.370328 6_3:-66570975 Msa0956990:intron
CAATATTAACATCGAGGAAA+TGG 0.372866 6_3:-66569957 Msa0956990:CDS
CCAAACGGTCCCTCAGAACT+TGG 0.376804 6_3:+66569678 None:intergenic
CATATTTGTTTGTAAGAAGA+TGG 0.378702 6_3:+66571089 None:intergenic
TTCAGACGAAGGAGATAATA+TGG 0.381516 6_3:-66569927 Msa0956990:CDS
GTTTCAAAGTACTGTGGAAA+TGG 0.394957 6_3:-66568298 Msa0956990:CDS
CCACACCTGGTATCATTTCT+GGG 0.408982 6_3:+66569569 None:intergenic
AGCGATTCATCCGAGTCTAA+TGG 0.410491 6_3:-66569860 Msa0956990:CDS
GGGATTCTCAAATTACTTCA+AGG 0.416997 6_3:-66568063 Msa0956990:CDS
GAGATAATATGGATGACAAT+GGG 0.436783 6_3:-66569916 Msa0956990:CDS
CTGTGTAAAACTAGATTCTT+GGG 0.438174 6_3:+66568145 None:intergenic
GCGATTCATCCGAGTCTAAT+GGG 0.449731 6_3:-66569859 Msa0956990:CDS
ACAGAACAGATTTGTTCATA+AGG 0.452815 6_3:+66571057 None:intergenic
TGTCTTAGGATGGAGTCGTT+TGG 0.452899 6_3:-66568223 Msa0956990:CDS
CACGAACATTTGAAATCTAC+AGG 0.467229 6_3:+66568244 None:intergenic
AAGAGTCCCTTAGCTTTGCT+TGG 0.468067 6_3:+66570987 None:intergenic
TATTCAGTTGTCGAAGGATG+TGG 0.485194 6_3:-66568029 Msa0956990:CDS
TTCTCGCTTCCGCCTCTCCA+AGG 0.489867 6_3:+66569592 None:intergenic
GGTGCAATGGCTAATTCATC+AGG 0.491612 6_3:-66569347 Msa0956990:intron
TCAATCTCAATCAAATCAGT+TGG 0.493229 6_3:+66569410 None:intergenic
TTGCATATAATTTCTACTCA+TGG 0.494106 6_3:-66569736 Msa0956990:CDS
AGAGAACAGGGGATTGACCT+TGG 0.494325 6_3:-66569609 Msa0956990:CDS
TGCGTATAACCACGAGCTGT+TGG 0.496702 6_3:-66569477 Msa0956990:CDS
CAAATTACTTCAAGGTATGC+GGG 0.499297 6_3:-66568055 Msa0956990:CDS
GCTTCTGTTGTAGGTTATGG+AGG 0.499576 6_3:-66570011 Msa0956990:intron
CTAAATTCATCAGATATGAA+TGG 0.499723 6_3:-66570123 Msa0956990:CDS
ATCCAAACCAAGCAAAGCTA+AGG 0.506402 6_3:-66570994 Msa0956990:CDS
GTTATACGCAAATTCAAATA+CGG 0.516568 6_3:+66569490 None:intergenic
CTGTTGGATGGTTTGCTATG+TGG 0.521362 6_3:-66569461 Msa0956990:CDS
CAAATGTTCGTGTCTTAGGA+TGG 0.523067 6_3:-66568233 Msa0956990:CDS
GTCGAAGGATGTGGCTGAGA+GGG 0.529678 6_3:-66568020 Msa0956990:CDS
ATTTCTACTCATGGTATGCA+AGG 0.531446 6_3:-66569727 Msa0956990:CDS
TCAAATTACTTCAAGGTATG+CGG 0.532144 6_3:-66568056 Msa0956990:CDS
TAGACATTGTTTCGAAGCGT+TGG 0.536274 6_3:-66569520 Msa0956990:CDS
TGTTGATTCAGGGAGTAGAA+GGG 0.541784 6_3:-66570158 Msa0956990:intron
CAAGTTCTGAGGGACCGTTT+GGG 0.542763 6_3:-66569677 Msa0956990:CDS
GGTGTTAGCTTTCTATGTGC+CGG 0.543539 6_3:+66569431 None:intergenic
TGTTGAATGAGAAGAAGATA+AGG 0.544301 6_3:+66571172 None:intergenic
AAGAATAAAACAACAACTGT+TGG 0.546824 6_3:-66567932 Msa0956990:CDS
GTGAACTGTCACATGGATGA+AGG 0.551488 6_3:+66570484 None:intergenic
ATTGAAAAGTATAAGAATGT+TGG 0.559478 6_3:-66569392 Msa0956990:CDS
GCTGCAGAACATTACCCAAA+CGG 0.563552 6_3:+66569663 None:intergenic
TATAACCACGAGCTGTTGGA+TGG 0.564037 6_3:-66569473 Msa0956990:CDS
CCGTGTATATATTGAAAATG+TGG 0.564938 6_3:-66570462 Msa0956990:intron
TGAAATTCAAGAGATGTCCA+TGG 0.566346 6_3:-66568335 Msa0956990:intron
GTTCGAGCAAGATACACAAA+TGG 0.566756 6_3:-66568097 Msa0956990:CDS
GGAGATAATATGGATGACAA+TGG 0.571879 6_3:-66569917 Msa0956990:CDS
TCTGTTGTAGGTTATGGAGG+AGG 0.573234 6_3:-66570008 Msa0956990:intron
TTCGGAAGACCCAAGTTCTG+AGG 0.573488 6_3:-66569688 Msa0956990:CDS
TTTCTGTAGATGTAGTTGAA+AGG 0.575027 6_3:-66569781 Msa0956990:CDS
ATATCAAACGTATGGTGCAA+TGG 0.580935 6_3:-66569360 Msa0956990:CDS
GAGAACCCAGAAATGATACC+AGG 0.586155 6_3:-66569574 Msa0956990:CDS
GTAAGACCATATCAAACGTA+TGG 0.586746 6_3:-66569368 Msa0956990:CDS
TTGGTATTGATGCTAGCAGT+GGG 0.587532 6_3:-66567913 Msa0956990:CDS
AACTTTGTAGATAGAACCCA+TGG 0.589394 6_3:+66568318 None:intergenic
GGGGATTGACCTTGGAGAGG+CGG 0.591821 6_3:-66569601 Msa0956990:CDS
ATCAGATATGAATGGATGCA+TGG 0.592737 6_3:-66570115 Msa0956990:CDS
GCTATAGTCATAAATGGCAT+CGG 0.596967 6_3:-66569833 Msa0956990:CDS
GTAAAACTAGATTCTTGGGA+AGG 0.598080 6_3:+66568149 None:intergenic
GGGAATTATTCAGTTGTCGA+AGG 0.603195 6_3:-66568035 Msa0956990:CDS
GAAATTCAAGAGATGTCCAT+GGG 0.603913 6_3:-66568334 Msa0956990:intron
GAATGGATGCATGGATGATG+AGG 0.606403 6_3:-66570106 Msa0956990:CDS
ACAACAATAATATGATCGCA+AGG 0.609509 6_3:+66568196 None:intergenic
TCGGAAGACCCAAGTTCTGA+GGG 0.617413 6_3:-66569687 Msa0956990:CDS
CAAACGGTCCCTCAGAACTT+GGG 0.622569 6_3:+66569679 None:intergenic
TCCAAACCAAGCAAAGCTAA+GGG 0.624671 6_3:-66570993 Msa0956990:CDS
TTTCTACTCATGGTATGCAA+GGG 0.627306 6_3:-66569726 Msa0956990:CDS
ATGGACGAAGCTTCAGACGA+AGG 0.631163 6_3:-66569938 Msa0956990:CDS
TACAAAGTTTCAAAGTACTG+TGG 0.634037 6_3:-66568304 Msa0956990:CDS
ACTGTGGAAATGGAAGTGTC+TGG 0.638067 6_3:-66568288 Msa0956990:CDS
TATAGCATTCCCATTAGACT+CGG 0.641750 6_3:+66569850 None:intergenic
GCTTCGAAACAATGTCTATG+TGG 0.645082 6_3:+66569525 None:intergenic
AATGGGGCTAATGAGTGTGA+TGG 0.645283 6_3:-66569899 Msa0956990:CDS
CCCAGAAATGATACCAGGTG+TGG 0.648094 6_3:-66569569 Msa0956990:CDS
TGTCGAAGGATGTGGCTGAG+AGG 0.652941 6_3:-66568021 Msa0956990:CDS
GCAAACCATCCAACAGCTCG+TGG 0.662133 6_3:+66569468 None:intergenic
ACAGGGGATTGACCTTGGAG+AGG 0.670051 6_3:-66569604 Msa0956990:CDS
AGATAATATGGATGACAATG+GGG 0.688595 6_3:-66569915 Msa0956990:CDS
ATACACGGTGAACTGTCACA+TGG 0.692606 6_3:+66570477 None:intergenic
GTTGGTATTGATGCTAGCAG+TGG 0.710979 6_3:-66567914 Msa0956990:CDS
CACTAAGAAAATCTACAATG+CGG 0.712293 6_3:+66567972 None:intergenic
TAATGACAATATTAACATCG+AGG 0.732342 6_3:-66569963 Msa0956990:CDS
TGGTATTGATGCTAGCAGTG+GGG 0.757439 6_3:-66567912 Msa0956990:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACAGATTTTTTTTTTAAA+TGG + chr6_3:66568320-66568339 None:intergenic 10.0%
!!! TTTTTCTTAAAACTCAATTT+TGG + chr6_3:66567841-66567860 None:intergenic 15.0%
!!! TTTTTTAGAATCAATAAGTT+GGG + chr6_3:66568414-66568433 None:intergenic 15.0%
!!! TTTTTTTAGAATCAATAAGT+TGG + chr6_3:66568415-66568434 None:intergenic 15.0%
!! AATAAATTGATGCTAATTAT+TGG - chr6_3:66568434-66568453 Msa0956990:intron 15.0%
!!! TATCTCTTTTTAATTAATGT+GGG + chr6_3:66568580-66568599 None:intergenic 15.0%
!!! TTATCTCTTTTTAATTAATG+TGG + chr6_3:66568581-66568600 None:intergenic 15.0%
!!! TTTTTTTAAATGGTGAGAAT+TGG + chr6_3:66568310-66568329 None:intergenic 20.0%
!! AATGAATGAAAAAGGTTAAT+GGG + chr6_3:66568630-66568649 None:intergenic 20.0%
!! AAATGAATGAAAAAGGTTAA+TGG + chr6_3:66568631-66568650 None:intergenic 20.0%
!! TTATCTATAATATCATCAGT+AGG + chr6_3:66568655-66568674 None:intergenic 20.0%
!! GTAAGTAAAAAGTGATTATT+AGG - chr6_3:66568905-66568924 Msa0956990:intron 20.0%
!!! ATTGAAAAGTATAAGAATGT+TGG - chr6_3:66569594-66569613 Msa0956990:CDS 20.0%
!!! TCGTATGAATTATGAATTTT+TGG - chr6_3:66569860-66569879 Msa0956990:CDS 20.0%
!!! ATTGTATTTGTTTTTCCTAT+AGG + chr6_3:66569909-66569928 None:intergenic 20.0%
!!! TTTTGGAAATATACTCTTTA+TGG + chr6_3:66570113-66570132 None:intergenic 20.0%
! CATATTTGTTTGTAAGAAGA+TGG + chr6_3:66567900-66567919 None:intergenic 25.0%
! GTCATCAATGTCAAATATAA+TGG + chr6_3:66568157-66568176 None:intergenic 25.0%
!! CCACATTTTCAATATATACA+CGG + chr6_3:66568527-66568546 None:intergenic 25.0%
! AGTAGGAAAATGAATGAAAA+AGG + chr6_3:66568638-66568657 None:intergenic 25.0%
! TAATGTTGAAAATGTGTCTA+AGG + chr6_3:66568722-66568741 None:intergenic 25.0%
! CTAAATTCATCAGATATGAA+TGG - chr6_3:66568863-66568882 Msa0956990:intron 25.0%
! CAAGGTTTCAAATTTATGAT+TGG - chr6_3:66568943-66568962 Msa0956990:intron 25.0%
! TAAAATTATGCTTCTGTTGT+AGG - chr6_3:66568966-66568985 Msa0956990:intron 25.0%
! TAATGACAATATTAACATCG+AGG - chr6_3:66569023-66569042 Msa0956990:intron 25.0%
! TTGCATATAATTTCTACTCA+TGG - chr6_3:66569250-66569269 Msa0956990:intron 25.0%
! GTTATACGCAAATTCAAATA+CGG + chr6_3:66569499-66569518 None:intergenic 25.0%
! AAGGATTTGTATAATCAATC+AGG - chr6_3:66569690-66569709 Msa0956990:CDS 25.0%
!!! ATGAATTTTTGGTGATGTAT+TGG - chr6_3:66569871-66569890 Msa0956990:CDS 25.0%
! ATATCTTAAAAGATGCATGT+TGG - chr6_3:66570207-66570226 Msa0956990:intron 25.0%
! TATCTTAAAAGATGCATGTT+GGG - chr6_3:66570208-66570227 Msa0956990:intron 25.0%
! TGAATAAGTTTGAAGAACTA+TGG - chr6_3:66570242-66570261 Msa0956990:intron 25.0%
! GAATAAGTTTGAAGAACTAT+GGG - chr6_3:66570243-66570262 Msa0956990:intron 25.0%
! TGTATGCAAAAAAAAGAATG+TGG - chr6_3:66570317-66570336 Msa0956990:intron 25.0%
! GTATGCAAAAAAAAGAATGT+GGG - chr6_3:66570318-66570337 Msa0956990:intron 25.0%
!!! AAGATTTTTTCAGAGCATTA+CGG + chr6_3:66570615-66570634 None:intergenic 25.0%
!!! TATTGTTGTTTTGATGTATC+TGG - chr6_3:66570804-66570823 Msa0956990:intron 25.0%
! AAGAATAAAACAACAACTGT+TGG - chr6_3:66571054-66571073 Msa0956990:CDS 25.0%
! ACAGAACAGATTTGTTCATA+AGG + chr6_3:66567932-66567951 None:intergenic 30.0%
AACAGAAGAATTCAGTTTGA+AGG + chr6_3:66568078-66568097 None:intergenic 30.0%
CCGTGTATATATTGAAAATG+TGG - chr6_3:66568524-66568543 Msa0956990:intron 30.0%
!! ATCATATGTGTTGTTGATTC+AGG - chr6_3:66568817-66568836 Msa0956990:intron 30.0%
!! TCATATGTGTTGTTGATTCA+GGG - chr6_3:66568818-66568837 Msa0956990:intron 30.0%
! AGGTATTTACATTTGAAGCA+AGG - chr6_3:66568925-66568944 Msa0956990:intron 30.0%
CAATATTAACATCGAGGAAA+TGG - chr6_3:66569029-66569048 Msa0956990:intron 30.0%
GAGATAATATGGATGACAAT+GGG - chr6_3:66569070-66569089 Msa0956990:intron 30.0%
AGATAATATGGATGACAATG+GGG - chr6_3:66569071-66569090 Msa0956990:intron 30.0%
!! CATCGGTGATATTTTAAAGA+TGG - chr6_3:66569170-66569189 Msa0956990:intron 30.0%
TTTCTGTAGATGTAGTTGAA+AGG - chr6_3:66569205-66569224 Msa0956990:intron 30.0%
TCAATCTCAATCAAATCAGT+TGG + chr6_3:66569579-66569598 None:intergenic 30.0%
!! CAAGTTAGGTTTTGTGAAAA+AGG - chr6_3:66569671-66569690 Msa0956990:CDS 30.0%
ATAATCAATCAGGAAGACAA+AGG - chr6_3:66569700-66569719 Msa0956990:CDS 30.0%
ATACTGTAGACAAAGATAAG+AGG - chr6_3:66569805-66569824 Msa0956990:CDS 30.0%
TTGGTTATGATGATTAACAC+CGG + chr6_3:66569951-66569970 None:intergenic 30.0%
! CATAATCTATGATGTGCTTT+TGG + chr6_3:66570130-66570149 None:intergenic 30.0%
GAAGAGATGGTTGAAAAATT+TGG - chr6_3:66570265-66570284 Msa0956990:intron 30.0%
!!! ATCAAAGGAGAATTTTTTGC+AGG - chr6_3:66570352-66570371 Msa0956990:intron 30.0%
! ATTTTGTCCAGCAATTTCAT+AGG - chr6_3:66570452-66570471 Msa0956990:intron 30.0%
CTCGAAATCGAAAATATGTA+AGG + chr6_3:66570480-66570499 None:intergenic 30.0%
AAAAAATCTCCCTTGTAAAC+TGG + chr6_3:66570585-66570604 None:intergenic 30.0%
!! TACAAAGTTTCAAAGTACTG+TGG - chr6_3:66570682-66570701 Msa0956990:intron 30.0%
ATTTCAAATGTTCGTGTCTT+AGG - chr6_3:66570749-66570768 Msa0956990:intron 30.0%
ACAACAATAATATGATCGCA+AGG + chr6_3:66570793-66570812 None:intergenic 30.0%
CTGTGTAAAACTAGATTCTT+GGG + chr6_3:66570844-66570863 None:intergenic 30.0%
ACACAAATGGTTCACAATAT+TGG - chr6_3:66570902-66570921 Msa0956990:intron 30.0%
CACAAATGGTTCACAATATT+GGG - chr6_3:66570903-66570922 Msa0956990:intron 30.0%
TCAAATTACTTCAAGGTATG+CGG - chr6_3:66570930-66570949 Msa0956990:intron 30.0%
CACTAAGAAAATCTACAATG+CGG + chr6_3:66571017-66571036 None:intergenic 30.0%
! TTGATGACCATATGTGTATG+CGG - chr6_3:66568169-66568188 Msa0956990:CDS 35.0%
ATCAGATATGAATGGATGCA+TGG - chr6_3:66568871-66568890 Msa0956990:intron 35.0%
TATGCTTCTGTTGTAGGTTA+TGG - chr6_3:66568972-66568991 Msa0956990:intron 35.0%
TTCAGACGAAGGAGATAATA+TGG - chr6_3:66569059-66569078 Msa0956990:intron 35.0%
GGAGATAATATGGATGACAA+TGG - chr6_3:66569069-66569088 Msa0956990:intron 35.0%
TATAGCATTCCCATTAGACT+CGG + chr6_3:66569139-66569158 None:intergenic 35.0%
GGGAATGCTATAGTCATAAA+TGG - chr6_3:66569147-66569166 Msa0956990:intron 35.0%
GCTATAGTCATAAATGGCAT+CGG - chr6_3:66569153-66569172 Msa0956990:intron 35.0%
ATTTCTACTCATGGTATGCA+AGG - chr6_3:66569259-66569278 Msa0956990:intron 35.0%
TTTCTACTCATGGTATGCAA+GGG - chr6_3:66569260-66569279 Msa0956990:intron 35.0%
! GGGTAAACAGATTTTCTGTT+CGG - chr6_3:66569280-66569299 Msa0956990:intron 35.0%
!! AGCAAACTTTTGTTTGTTCG+CGG - chr6_3:66569343-66569362 Msa0956990:intron 35.0%
!! TTTGCTATGTGGTCTTTTAC+CGG - chr6_3:66569536-66569555 Msa0956990:CDS 35.0%
GTAAGACCATATCAAACGTA+TGG - chr6_3:66569618-66569637 Msa0956990:CDS 35.0%
ATTGCACCATACGTTTGATA+TGG + chr6_3:66569627-66569646 None:intergenic 35.0%
ATATCAAACGTATGGTGCAA+TGG - chr6_3:66569626-66569645 Msa0956990:CDS 35.0%
TTAGTTTCATCTGACTCTTG+CGG - chr6_3:66569726-66569745 Msa0956990:CDS 35.0%
TTTCCTATAGGTTGCATCAA+AGG + chr6_3:66569897-66569916 None:intergenic 35.0%
ACACCGGAGAAAATAACAAA+CGG + chr6_3:66569935-66569954 None:intergenic 35.0%
CTGTTGTAAAGACAACAGTT+TGG + chr6_3:66569970-66569989 None:intergenic 35.0%
CAAACTGTTGTCTTTACAAC+AGG - chr6_3:66569968-66569987 Msa0956990:CDS 35.0%
AGGTTTAGTTATGAGAGAGA+CGG - chr6_3:66569988-66570007 Msa0956990:CDS 35.0%
AGAGACATATGTTTGGTTGT+TGG - chr6_3:66570012-66570031 Msa0956990:intron 35.0%
CCTTTATCCGTAATAACTGA+CGG - chr6_3:66570067-66570086 Msa0956990:intron 35.0%
AACATCACCGTCAGTTATTA+CGG + chr6_3:66570077-66570096 None:intergenic 35.0%
CACATCATAGATTATGTGCT+TGG - chr6_3:66570134-66570153 Msa0956990:CDS 35.0%
TCTGACTATCATTCCAACTA+TGG - chr6_3:66570508-66570527 Msa0956990:intron 35.0%
! TCGCAAACTAGTTTGCAATA+CGG + chr6_3:66570539-66570558 None:intergenic 35.0%
!! TTTTCAGAGCATTACGGAAA+AGG + chr6_3:66570609-66570628 None:intergenic 35.0%
TGAAATTCAAGAGATGTCCA+TGG - chr6_3:66570651-66570670 Msa0956990:intron 35.0%
GAAATTCAAGAGATGTCCAT+GGG - chr6_3:66570652-66570671 Msa0956990:intron 35.0%
AACTTTGTAGATAGAACCCA+TGG + chr6_3:66570671-66570690 None:intergenic 35.0%
!! GTTTCAAAGTACTGTGGAAA+TGG - chr6_3:66570688-66570707 Msa0956990:intron 35.0%
! CACGAACATTTGAAATCTAC+AGG + chr6_3:66570745-66570764 None:intergenic 35.0%
GTAAAACTAGATTCTTGGGA+AGG + chr6_3:66570840-66570859 None:intergenic 35.0%
CCTGTGTAAAACTAGATTCT+TGG + chr6_3:66570845-66570864 None:intergenic 35.0%
!!! CCAAGAATCTAGTTTTACAC+AGG - chr6_3:66570842-66570861 Msa0956990:intron 35.0%
!!! AGAATCTAGTTTTACACAGG+TGG - chr6_3:66570845-66570864 Msa0956990:intron 35.0%
GGGATTCTCAAATTACTTCA+AGG - chr6_3:66570923-66570942 Msa0956990:intron 35.0%
CAAATTACTTCAAGGTATGC+GGG - chr6_3:66570931-66570950 Msa0956990:intron 35.0%
!! TTCTTAGTGCTGAACTTTTG+AGG - chr6_3:66571028-66571047 Msa0956990:CDS 35.0%
ATCCAAACCAAGCAAAGCTA+AGG - chr6_3:66567992-66568011 Msa0956990:CDS 40.0%
TCCAAACCAAGCAAAGCTAA+GGG - chr6_3:66567993-66568012 Msa0956990:CDS 40.0%
! AAGGGACTCTTTGTGTTGTT+AGG - chr6_3:66568011-66568030 Msa0956990:CDS 40.0%
! ATAAGCACCGCATACACATA+TGG + chr6_3:66568179-66568198 None:intergenic 40.0%
GTGTCTAAGGAGATCAAACT+AGG + chr6_3:66568709-66568728 None:intergenic 40.0%
!! TTGTTGATTCAGGGAGTAGA+AGG - chr6_3:66568827-66568846 Msa0956990:intron 40.0%
!! TGTTGATTCAGGGAGTAGAA+GGG - chr6_3:66568828-66568847 Msa0956990:intron 40.0%
!! GCAAACTTTTGTTTGTTCGC+GGG - chr6_3:66569344-66569363 Msa0956990:intron 40.0%
!!! GGAAGGTTTTAGAGAGAACA+GGG - chr6_3:66569365-66569384 Msa0956990:CDS 40.0%
!!! GAAGGTTTTAGAGAGAACAG+GGG - chr6_3:66569366-66569385 Msa0956990:CDS 40.0%
GCTTCGAAACAATGTCTATG+TGG + chr6_3:66569464-66569483 None:intergenic 40.0%
TAGACATTGTTTCGAAGCGT+TGG - chr6_3:66569466-66569485 Msa0956990:CDS 40.0%
! TCAGGTGGTTTTCACAAGTT+AGG - chr6_3:66569657-66569676 Msa0956990:CDS 40.0%
!!! AGAGGCTTGAACGTCTTTTT+TGG - chr6_3:66569823-66569842 Msa0956990:CDS 40.0%
!!! GAACGTCTTTTTTGGTGTGA+TGG - chr6_3:66569831-66569850 Msa0956990:CDS 40.0%
!!! TGCCCGTTTGTTATTTTCTC+CGG - chr6_3:66569929-66569948 Msa0956990:CDS 40.0%
CACCGGAGAAAATAACAAAC+GGG + chr6_3:66569934-66569953 None:intergenic 40.0%
AGACGGAAGAGACATATGTT+TGG - chr6_3:66570005-66570024 Msa0956990:intron 40.0%
CCGTCAGTTATTACGGATAA+AGG + chr6_3:66570070-66570089 None:intergenic 40.0%
TATGTGCTTGGCATCTTCTA+CGG - chr6_3:66570146-66570165 Msa0956990:CDS 40.0%
GGAATGCATCATCGAATGTT+GGG - chr6_3:66570167-66570186 Msa0956990:intron 40.0%
AAGATGCATGTTGGGTGATA+TGG - chr6_3:66570216-66570235 Msa0956990:intron 40.0%
TGAAGAACTATGGGAAGAGA+TGG - chr6_3:66570252-66570271 Msa0956990:intron 40.0%
TGATCCAATTGTTGTCTTGC+AGG + chr6_3:66570291-66570310 None:intergenic 40.0%
GAGGGTTTACATAGTCACAT+AGG - chr6_3:66570397-66570416 Msa0956990:intron 40.0%
! TAAGGCACCTATGAAATTGC+TGG + chr6_3:66570462-66570481 None:intergenic 40.0%
! CGCAAACTAGTTTGCAATAC+GGG + chr6_3:66570538-66570557 None:intergenic 40.0%
! AGCATCGAACCAGTTTACAA+GGG - chr6_3:66570573-66570592 Msa0956990:intron 40.0%
CAAATGTTCGTGTCTTAGGA+TGG - chr6_3:66570753-66570772 Msa0956990:intron 40.0%
GTTCGAGCAAGATACACAAA+TGG - chr6_3:66570889-66570908 Msa0956990:intron 40.0%
GGGAATTATTCAGTTGTCGA+AGG - chr6_3:66570951-66570970 Msa0956990:intron 40.0%
TATTCAGTTGTCGAAGGATG+TGG - chr6_3:66570957-66570976 Msa0956990:intron 40.0%
!! TTGGTATTGATGCTAGCAGT+GGG - chr6_3:66571073-66571092 Msa0956990:exon 40.0%
CTTTAGTCCTCACACAAGTA+GGG + chr6_3:66571134-66571153 None:intergenic 40.0%
CTACTTGTGTGAGGACTAAA+GGG - chr6_3:66571133-66571152 Msa0956990:five_prime_UTR 40.0%
ACTAATCCAATTGTTACGCC+TGG - chr6_3:66571162-66571181 Msa0956990:five_prime_UTR 40.0%
!! CTTTGCTTGGTTTGGATCTC+AGG + chr6_3:66567989-66568008 None:intergenic 45.0%
!! TCCCTTAGCTTTGCTTGGTT+TGG + chr6_3:66567997-66568016 None:intergenic 45.0%
!! AAGAGTCCCTTAGCTTTGCT+TGG + chr6_3:66568002-66568021 None:intergenic 45.0%
GTGAACTGTCACATGGATGA+AGG + chr6_3:66568505-66568524 None:intergenic 45.0%
ATACACGGTGAACTGTCACA+TGG + chr6_3:66568512-66568531 None:intergenic 45.0%
CATTGAGGCAGTTGCAAATC+AGG + chr6_3:66568678-66568697 None:intergenic 45.0%
TTGCAACTGCCTCAATGTTG+TGG - chr6_3:66568681-66568700 Msa0956990:intron 45.0%
! AACTAGGTGCCACAACATTG+AGG + chr6_3:66568693-66568712 None:intergenic 45.0%
GAATGGATGCATGGATGATG+AGG - chr6_3:66568880-66568899 Msa0956990:intron 45.0%
GCTTCTGTTGTAGGTTATGG+AGG - chr6_3:66568975-66568994 Msa0956990:intron 45.0%
TCTGTTGTAGGTTATGGAGG+AGG - chr6_3:66568978-66568997 Msa0956990:intron 45.0%
AATGGGGCTAATGAGTGTGA+TGG - chr6_3:66569087-66569106 Msa0956990:intron 45.0%
AGCGATTCATCCGAGTCTAA+TGG - chr6_3:66569126-66569145 Msa0956990:intron 45.0%
GCGATTCATCCGAGTCTAAT+GGG - chr6_3:66569127-66569146 Msa0956990:intron 45.0%
GCTGCAGAACATTACCCAAA+CGG + chr6_3:66569326-66569345 None:intergenic 45.0%
!! ACTTTTGTTTGTTCGCGGGA+AGG - chr6_3:66569348-66569367 Msa0956990:CDS 45.0%
!!! GGGAAGGTTTTAGAGAGAAC+AGG - chr6_3:66569364-66569383 Msa0956990:CDS 45.0%
GAGAACCCAGAAATGATACC+AGG - chr6_3:66569412-66569431 Msa0956990:CDS 45.0%
CCACACCTGGTATCATTTCT+GGG + chr6_3:66569420-66569439 None:intergenic 45.0%
TCCACACCTGGTATCATTTC+TGG + chr6_3:66569421-66569440 None:intergenic 45.0%
! TTTTGCAGAACATCCACACC+TGG + chr6_3:66569433-66569452 None:intergenic 45.0%
TATAACCACGAGCTGTTGGA+TGG - chr6_3:66569513-66569532 Msa0956990:CDS 45.0%
!! CTGTTGGATGGTTTGCTATG+TGG - chr6_3:66569525-66569544 Msa0956990:CDS 45.0%
!! GGTGTTAGCTTTCTATGTGC+CGG + chr6_3:66569558-66569577 None:intergenic 45.0%
GGTGCAATGGCTAATTCATC+AGG - chr6_3:66569639-66569658 Msa0956990:CDS 45.0%
GCAATGGCTAATTCATCAGG+TGG - chr6_3:66569642-66569661 Msa0956990:CDS 45.0%
TGGCCTTTGATGCAACCTAT+AGG - chr6_3:66569891-66569910 Msa0956990:CDS 45.0%
CATTCATAGCAGTCGCGAAT+TGG + chr6_3:66570039-66570058 None:intergenic 45.0%
CAATTCGCGACTGCTATGAA+TGG - chr6_3:66570037-66570056 Msa0956990:intron 45.0%
CGGAATGCATCATCGAATGT+TGG - chr6_3:66570166-66570185 Msa0956990:intron 45.0%
ATGCATGTTGGGTGATATGG+AGG - chr6_3:66570219-66570238 Msa0956990:intron 45.0%
TTGGCCTGCAAGACAACAAT+TGG - chr6_3:66570284-66570303 Msa0956990:intron 45.0%
! CAATACGGGTTGACCATAGT+TGG + chr6_3:66570524-66570543 None:intergenic 45.0%
! CAGCATCGAACCAGTTTACA+AGG - chr6_3:66570572-66570591 Msa0956990:intron 45.0%
!! ACTGTGGAAATGGAAGTGTC+TGG - chr6_3:66570698-66570717 Msa0956990:intron 45.0%
TGTCTTAGGATGGAGTCGTT+TGG - chr6_3:66570763-66570782 Msa0956990:intron 45.0%
!! GTTGGTATTGATGCTAGCAG+TGG - chr6_3:66571072-66571091 Msa0956990:exon 45.0%
!! TGGTATTGATGCTAGCAGTG+GGG - chr6_3:66571074-66571093 Msa0956990:exon 45.0%
AGTCGTCGACGAAAGTTTAC+TGG - chr6_3:66571107-66571126 Msa0956990:five_prime_UTR 45.0%
CCTTTAGTCCTCACACAAGT+AGG + chr6_3:66571135-66571154 None:intergenic 45.0%
CCTACTTGTGTGAGGACTAA+AGG - chr6_3:66571132-66571151 Msa0956990:five_prime_UTR 45.0%
AATCCAATTGTTACGCCTGG+TGG - chr6_3:66571165-66571184 Msa0956990:five_prime_UTR 45.0%
!!! ATAAAAATAAAACTTAATTT+TGG + chr6_3:66568043-66568062 None:intergenic 5.0%
ATGGACGAAGCTTCAGACGA+AGG - chr6_3:66569048-66569067 Msa0956990:intron 50.0%
TTCGGAAGACCCAAGTTCTG+AGG - chr6_3:66569298-66569317 Msa0956990:intron 50.0%
! TCGGAAGACCCAAGTTCTGA+GGG - chr6_3:66569299-66569318 Msa0956990:intron 50.0%
CAAACGGTCCCTCAGAACTT+GGG + chr6_3:66569310-66569329 None:intergenic 50.0%
!! CAAGTTCTGAGGGACCGTTT+GGG - chr6_3:66569309-66569328 Msa0956990:intron 50.0%
AGAGAACAGGGGATTGACCT+TGG - chr6_3:66569377-66569396 Msa0956990:CDS 50.0%
CCCAGAAATGATACCAGGTG+TGG - chr6_3:66569417-66569436 Msa0956990:CDS 50.0%
TGCGTATAACCACGAGCTGT+TGG - chr6_3:66569509-66569528 Msa0956990:CDS 50.0%
CGCGACTGCTATGAATGGTA+AGG - chr6_3:66570042-66570061 Msa0956990:intron 50.0%
TGGGCGACTGCTCATATCAA+AGG - chr6_3:66570337-66570356 Msa0956990:intron 50.0%
CAGGTATACGAACCACGTCT+CGG - chr6_3:66570371-66570390 Msa0956990:intron 50.0%
TACTGGACCCTACTTGTGTG+AGG - chr6_3:66571124-66571143 Msa0956990:five_prime_UTR 50.0%
TGTGTGAGGACTAAAGGGTG+TGG - chr6_3:66571138-66571157 Msa0956990:five_prime_UTR 50.0%
CTTCCACCAGGCGTAACAAT+TGG + chr6_3:66571171-66571190 None:intergenic 50.0%
CCAAACGGTCCCTCAGAACT+TGG + chr6_3:66569311-66569330 None:intergenic 55.0%
!! CCAAGTTCTGAGGGACCGTT+TGG - chr6_3:66569308-66569327 Msa0956990:intron 55.0%
ACAGGGGATTGACCTTGGAG+AGG - chr6_3:66569382-66569401 Msa0956990:CDS 55.0%
GCAAACCATCCAACAGCTCG+TGG + chr6_3:66569521-66569540 None:intergenic 55.0%
TAAACCCTCACACCGAGACG+TGG + chr6_3:66570386-66570405 None:intergenic 55.0%
TGTCGAAGGATGTGGCTGAG+AGG - chr6_3:66570965-66570984 Msa0956990:intron 55.0%
GTCGAAGGATGTGGCTGAGA+GGG - chr6_3:66570966-66570985 Msa0956990:intron 55.0%
GGGGATTGACCTTGGAGAGG+CGG - chr6_3:66569385-66569404 Msa0956990:CDS 60.0%
TTCTCGCTTCCGCCTCTCCA+AGG + chr6_3:66569397-66569416 None:intergenic 60.0%
! ACGAACCACGTCTCGGTGTG+AGG - chr6_3:66570378-66570397 Msa0956990:intron 60.0%
! CGAACCACGTCTCGGTGTGA+GGG - chr6_3:66570379-66570398 Msa0956990:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 66567815 66571193 66567815 ID=Msa0956990;Name=Msa0956990
chr6_3 mRNA 66567815 66571193 66567815 ID=Msa0956990-mRNA-1;Parent=Msa0956990;Name=Msa0956990-mRNA-1;_AED=0.21;_eAED=0.21;_QI=118|0.2|0.33|0.5|1|1|6|0|440
chr6_3 exon 66567815 66567817 66567815 ID=Msa0956990-mRNA-1:exon:12410;Parent=Msa0956990-mRNA-1
chr6_3 exon 66567913 66568346 66567913 ID=Msa0956990-mRNA-1:exon:12409;Parent=Msa0956990-mRNA-1
chr6_3 exon 66569348 66570020 66569348 ID=Msa0956990-mRNA-1:exon:12408;Parent=Msa0956990-mRNA-1
chr6_3 exon 66570104 66570169 66570104 ID=Msa0956990-mRNA-1:exon:12407;Parent=Msa0956990-mRNA-1
chr6_3 exon 66570463 66570509 66570463 ID=Msa0956990-mRNA-1:exon:12406;Parent=Msa0956990-mRNA-1
chr6_3 exon 66570976 66571193 66570976 ID=Msa0956990-mRNA-1:exon:12405;Parent=Msa0956990-mRNA-1
chr6_3 five_prime_UTR 66571076 66571193 66571076 ID=Msa0956990-mRNA-1:five_prime_utr;Parent=Msa0956990-mRNA-1
chr6_3 CDS 66570976 66571075 66570976 ID=Msa0956990-mRNA-1:cds;Parent=Msa0956990-mRNA-1
chr6_3 CDS 66570463 66570509 66570463 ID=Msa0956990-mRNA-1:cds;Parent=Msa0956990-mRNA-1
chr6_3 CDS 66570104 66570169 66570104 ID=Msa0956990-mRNA-1:cds;Parent=Msa0956990-mRNA-1
chr6_3 CDS 66569348 66570020 66569348 ID=Msa0956990-mRNA-1:cds;Parent=Msa0956990-mRNA-1
chr6_3 CDS 66567913 66568346 66567913 ID=Msa0956990-mRNA-1:cds;Parent=Msa0956990-mRNA-1
chr6_3 CDS 66567815 66567817 66567815 ID=Msa0956990-mRNA-1:cds;Parent=Msa0956990-mRNA-1
Gene Sequence

>Msa0956990

ATGAACAAATCTGTTCTGTTGTCTTTCAAATTGAGTTCAAGTAAAAGTAGCATCCTGAGATCCAAACCAAGCAAAGCTAAGGGACTCTTTGTGTTGTTAGATTCCTTCATCCATGTGACAGTTCACCGTGTATATATTGAAAATGTGGGAGTAGAAGGGAGTGATCAGTCTCTAAATTCATCAGATATGAATGGATGCATGGATGATGAGGAAGTTATGGAGGAGGTAACAGAAAGTTCAGCTGACAGTAATGACAATATTAACATCGAGGAAATGGACGAAGCTTCAGACGAAGGAGATAATATGGATGACAATGGGGCTAATGAGTGTGATGGAGATTTAGAAGCGAGTAGCGATTCATCCGAGTCTAATGGGAATGCTATAGTCATAAATGGCATCGGTGATATTTTAAAGATGGACATGAAAAACATTTCTGTAGATGTAGTTGAAAGGTTTGACTTTGCTGATTTAGATGTTGCATATAATTTCTACTCATGGTATGCAAGGGTAAACAGATTTTCTGTTCGGAAGACCCAAGTTCTGAGGGACCGTTTGGGTAATGTTCTGCAGCAAACTTTTGTTTGTTCGCGGGAAGGTTTTAGAGAGAACAGGGGATTGACCTTGGAGAGGCGGAAGCGAGAACCCAGAAATGATACCAGGTGTGGATGTTCTGCAAAATGTCGTGTCCACATAGACATTGTTTCGAAGCGTTGGTATGTGACCGTATTTGAATTTGCGTATAACCACGAGCTGTTGGATGGTTTGCTATGTGGTCTTTTACCGGCACATAGAAAGCTAACACCAACTGATTTGATTGAGATTGAAAAGTATAAGAATGTTGGTGTAAGACCATATCAAACGTATGGTGCAATGGCTAATTCATCAGAGATGTCCATGGGTTCTATCTACAAAGTTTCAAAGTACTGTGGAAATGGAAGTGTCTGGCACGTTACACATTGTGAAACTCCTGTAGATTTCAAATGTTCGTGTCTTAGGATGGAGTCGTTTGGACTGCCTTGCGATCATATTATTGTTGTTTTGATGTATCTGGATTTTGATCACCTTCCCAAGAATCTAGTTTTACACAGGTGGACAAAGTTCGCTACAGATACAGTTCGAGCAAGATACACAAATGGTTCACAATATTGGGATTCTCAAATTACTTCAAGGTATGCGGGAATTATTCAGTTGTCGAAGGATGTGGCTGAGAGGGTTTATCAAGATGTAGAAGAGTACAACCGCATTGTAGATTTTCTTAGTGCTGAACTTTTGAGGTTGAAGAATAAAACAACAACTGTTGGTATTGATGCTAGCAGTGGGTAG

Protein sequence

>Msa0956990

MNKSVLLSFKLSSSKSSILRSKPSKAKGLFVLLDSFIHVTVHRVYIENVGVEGSDQSLNSSDMNGCMDDEEVMEEVTESSADSNDNINIEEMDEASDEGDNMDDNGANECDGDLEASSDSSESNGNAIVINGIGDILKMDMKNISVDVVERFDFADLDVAYNFYSWYARVNRFSVRKTQVLRDRLGNVLQQTFVCSREGFRENRGLTLERRKREPRNDTRCGCSAKCRVHIDIVSKRWYVTVFEFAYNHELLDGLLCGLLPAHRKLTPTDLIEIEKYKNVGVRPYQTYGAMANSSEMSMGSIYKVSKYCGNGSVWHVTHCETPVDFKCSCLRMESFGLPCDHIIVVLMYLDFDHLPKNLVLHRWTKFATDTVRARYTNGSQYWDSQITSRYAGIIQLSKDVAERVYQDVEEYNRIVDFLSAELLRLKNKTTTVGIDASSG*