Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0956990 | GAU43339.1 | 54.043 | 235 | 94 | 3 | 76 | 306 | 5 | 229 | 1.02e-78 | 259 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0956990 | sp|Q9LKR4|FRS10_ARATH | 36.975 | 119 | 72 | 2 | 154 | 270 | 61 | 178 | 3.37e-13 | 75.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0956990 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0956990 | MtrunA17_Chr1g0203051 | 33.010 | 206 | 129 | 2 | 98 | 295 | 22 | 226 | 9.35e-36 | 139 |
Msa0956990 | MtrunA17_Chr8g0389811 | 33.333 | 216 | 128 | 2 | 54 | 269 | 6 | 205 | 1.31e-35 | 130 |
Msa0956990 | MtrunA17_Chr1g0171741 | 34.222 | 225 | 123 | 5 | 50 | 274 | 59 | 258 | 1.14e-34 | 130 |
Msa0956990 | MtrunA17_Chr2g0331371 | 47.183 | 142 | 71 | 1 | 112 | 253 | 23 | 160 | 1.54e-32 | 122 |
Msa0956990 | MtrunA17_Chr2g0308841 | 64.103 | 78 | 28 | 0 | 291 | 368 | 149 | 226 | 1.28e-29 | 116 |
Msa0956990 | MtrunA17_Chr6g0473421 | 45.536 | 112 | 57 | 1 | 112 | 223 | 23 | 130 | 5.06e-26 | 103 |
Msa0956990 | MtrunA17_Chr1g0172931 | 43.269 | 104 | 59 | 0 | 127 | 230 | 55 | 158 | 4.62e-24 | 97.8 |
Msa0956990 | MtrunA17_Chr2g0287651 | 32.026 | 153 | 104 | 0 | 139 | 291 | 66 | 218 | 1.25e-21 | 98.2 |
Msa0956990 | MtrunA17_Chr6g0458391 | 28.444 | 225 | 137 | 10 | 59 | 274 | 5 | 214 | 5.11e-13 | 71.2 |
Msa0956990 | MtrunA17_Chr6g0458391 | 34.247 | 146 | 78 | 6 | 133 | 269 | 208 | 344 | 1.42e-11 | 66.6 |
Msa0956990 | MtrunA17_Chr1g0203721 | 26.636 | 214 | 116 | 10 | 86 | 283 | 10 | 198 | 1.58e-12 | 69.7 |
Msa0956990 | MtrunA17_Chr5g0448761 | 33.333 | 144 | 94 | 2 | 150 | 291 | 62 | 205 | 3.09e-12 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0956990 | AT5G28530.1 | 36.975 | 119 | 72 | 2 | 154 | 270 | 61 | 178 | 3.43e-14 | 75.1 |
Msa0956990 | AT5G28530.3 | 36.975 | 119 | 72 | 2 | 154 | 270 | 61 | 178 | 3.54e-14 | 75.1 |
Msa0956990 | AT5G28530.2 | 36.975 | 119 | 72 | 2 | 154 | 270 | 61 | 178 | 3.54e-14 | 75.1 |
Msa0956990 | AT5G28530.4 | 36.975 | 119 | 72 | 2 | 154 | 270 | 61 | 178 | 3.69e-14 | 75.1 |
Msa0956990 | AT5G28530.5 | 36.975 | 119 | 72 | 2 | 154 | 270 | 61 | 178 | 4.23e-14 | 74.7 |
Find 94 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCACACCTGGTATCATTTC+TGG | 0.155992 | 6_3:+66569568 | None:intergenic |
ACACAAATGGTTCACAATAT+TGG | 0.219824 | 6_3:-66568084 | Msa0956990:CDS |
CTTTGCTTGGTTTGGATCTC+AGG | 0.254922 | 6_3:+66571000 | None:intergenic |
CACAAATGGTTCACAATATT+GGG | 0.257023 | 6_3:-66568083 | Msa0956990:CDS |
TCCCTTAGCTTTGCTTGGTT+TGG | 0.257469 | 6_3:+66570992 | None:intergenic |
ATTTCAAATGTTCGTGTCTT+AGG | 0.296750 | 6_3:-66568237 | Msa0956990:CDS |
GGGAATGCTATAGTCATAAA+TGG | 0.304640 | 6_3:-66569839 | Msa0956990:CDS |
TTGTTGATTCAGGGAGTAGA+AGG | 0.319961 | 6_3:-66570159 | Msa0956990:intron |
CCTGTGTAAAACTAGATTCT+TGG | 0.335728 | 6_3:+66568144 | None:intergenic |
ATTGCACCATACGTTTGATA+TGG | 0.351243 | 6_3:+66569362 | None:intergenic |
CCAAGTTCTGAGGGACCGTT+TGG | 0.359223 | 6_3:-66569678 | Msa0956990:CDS |
AAGGGACTCTTTGTGTTGTT+AGG | 0.370328 | 6_3:-66570975 | Msa0956990:intron |
CAATATTAACATCGAGGAAA+TGG | 0.372866 | 6_3:-66569957 | Msa0956990:CDS |
CCAAACGGTCCCTCAGAACT+TGG | 0.376804 | 6_3:+66569678 | None:intergenic |
CATATTTGTTTGTAAGAAGA+TGG | 0.378702 | 6_3:+66571089 | None:intergenic |
TTCAGACGAAGGAGATAATA+TGG | 0.381516 | 6_3:-66569927 | Msa0956990:CDS |
GTTTCAAAGTACTGTGGAAA+TGG | 0.394957 | 6_3:-66568298 | Msa0956990:CDS |
CCACACCTGGTATCATTTCT+GGG | 0.408982 | 6_3:+66569569 | None:intergenic |
AGCGATTCATCCGAGTCTAA+TGG | 0.410491 | 6_3:-66569860 | Msa0956990:CDS |
GGGATTCTCAAATTACTTCA+AGG | 0.416997 | 6_3:-66568063 | Msa0956990:CDS |
GAGATAATATGGATGACAAT+GGG | 0.436783 | 6_3:-66569916 | Msa0956990:CDS |
CTGTGTAAAACTAGATTCTT+GGG | 0.438174 | 6_3:+66568145 | None:intergenic |
GCGATTCATCCGAGTCTAAT+GGG | 0.449731 | 6_3:-66569859 | Msa0956990:CDS |
ACAGAACAGATTTGTTCATA+AGG | 0.452815 | 6_3:+66571057 | None:intergenic |
TGTCTTAGGATGGAGTCGTT+TGG | 0.452899 | 6_3:-66568223 | Msa0956990:CDS |
CACGAACATTTGAAATCTAC+AGG | 0.467229 | 6_3:+66568244 | None:intergenic |
AAGAGTCCCTTAGCTTTGCT+TGG | 0.468067 | 6_3:+66570987 | None:intergenic |
TATTCAGTTGTCGAAGGATG+TGG | 0.485194 | 6_3:-66568029 | Msa0956990:CDS |
TTCTCGCTTCCGCCTCTCCA+AGG | 0.489867 | 6_3:+66569592 | None:intergenic |
GGTGCAATGGCTAATTCATC+AGG | 0.491612 | 6_3:-66569347 | Msa0956990:intron |
TCAATCTCAATCAAATCAGT+TGG | 0.493229 | 6_3:+66569410 | None:intergenic |
TTGCATATAATTTCTACTCA+TGG | 0.494106 | 6_3:-66569736 | Msa0956990:CDS |
AGAGAACAGGGGATTGACCT+TGG | 0.494325 | 6_3:-66569609 | Msa0956990:CDS |
TGCGTATAACCACGAGCTGT+TGG | 0.496702 | 6_3:-66569477 | Msa0956990:CDS |
CAAATTACTTCAAGGTATGC+GGG | 0.499297 | 6_3:-66568055 | Msa0956990:CDS |
GCTTCTGTTGTAGGTTATGG+AGG | 0.499576 | 6_3:-66570011 | Msa0956990:intron |
CTAAATTCATCAGATATGAA+TGG | 0.499723 | 6_3:-66570123 | Msa0956990:CDS |
ATCCAAACCAAGCAAAGCTA+AGG | 0.506402 | 6_3:-66570994 | Msa0956990:CDS |
GTTATACGCAAATTCAAATA+CGG | 0.516568 | 6_3:+66569490 | None:intergenic |
CTGTTGGATGGTTTGCTATG+TGG | 0.521362 | 6_3:-66569461 | Msa0956990:CDS |
CAAATGTTCGTGTCTTAGGA+TGG | 0.523067 | 6_3:-66568233 | Msa0956990:CDS |
GTCGAAGGATGTGGCTGAGA+GGG | 0.529678 | 6_3:-66568020 | Msa0956990:CDS |
ATTTCTACTCATGGTATGCA+AGG | 0.531446 | 6_3:-66569727 | Msa0956990:CDS |
TCAAATTACTTCAAGGTATG+CGG | 0.532144 | 6_3:-66568056 | Msa0956990:CDS |
TAGACATTGTTTCGAAGCGT+TGG | 0.536274 | 6_3:-66569520 | Msa0956990:CDS |
TGTTGATTCAGGGAGTAGAA+GGG | 0.541784 | 6_3:-66570158 | Msa0956990:intron |
CAAGTTCTGAGGGACCGTTT+GGG | 0.542763 | 6_3:-66569677 | Msa0956990:CDS |
GGTGTTAGCTTTCTATGTGC+CGG | 0.543539 | 6_3:+66569431 | None:intergenic |
TGTTGAATGAGAAGAAGATA+AGG | 0.544301 | 6_3:+66571172 | None:intergenic |
AAGAATAAAACAACAACTGT+TGG | 0.546824 | 6_3:-66567932 | Msa0956990:CDS |
GTGAACTGTCACATGGATGA+AGG | 0.551488 | 6_3:+66570484 | None:intergenic |
ATTGAAAAGTATAAGAATGT+TGG | 0.559478 | 6_3:-66569392 | Msa0956990:CDS |
GCTGCAGAACATTACCCAAA+CGG | 0.563552 | 6_3:+66569663 | None:intergenic |
TATAACCACGAGCTGTTGGA+TGG | 0.564037 | 6_3:-66569473 | Msa0956990:CDS |
CCGTGTATATATTGAAAATG+TGG | 0.564938 | 6_3:-66570462 | Msa0956990:intron |
TGAAATTCAAGAGATGTCCA+TGG | 0.566346 | 6_3:-66568335 | Msa0956990:intron |
GTTCGAGCAAGATACACAAA+TGG | 0.566756 | 6_3:-66568097 | Msa0956990:CDS |
GGAGATAATATGGATGACAA+TGG | 0.571879 | 6_3:-66569917 | Msa0956990:CDS |
TCTGTTGTAGGTTATGGAGG+AGG | 0.573234 | 6_3:-66570008 | Msa0956990:intron |
TTCGGAAGACCCAAGTTCTG+AGG | 0.573488 | 6_3:-66569688 | Msa0956990:CDS |
TTTCTGTAGATGTAGTTGAA+AGG | 0.575027 | 6_3:-66569781 | Msa0956990:CDS |
ATATCAAACGTATGGTGCAA+TGG | 0.580935 | 6_3:-66569360 | Msa0956990:CDS |
GAGAACCCAGAAATGATACC+AGG | 0.586155 | 6_3:-66569574 | Msa0956990:CDS |
GTAAGACCATATCAAACGTA+TGG | 0.586746 | 6_3:-66569368 | Msa0956990:CDS |
TTGGTATTGATGCTAGCAGT+GGG | 0.587532 | 6_3:-66567913 | Msa0956990:CDS |
AACTTTGTAGATAGAACCCA+TGG | 0.589394 | 6_3:+66568318 | None:intergenic |
GGGGATTGACCTTGGAGAGG+CGG | 0.591821 | 6_3:-66569601 | Msa0956990:CDS |
ATCAGATATGAATGGATGCA+TGG | 0.592737 | 6_3:-66570115 | Msa0956990:CDS |
GCTATAGTCATAAATGGCAT+CGG | 0.596967 | 6_3:-66569833 | Msa0956990:CDS |
GTAAAACTAGATTCTTGGGA+AGG | 0.598080 | 6_3:+66568149 | None:intergenic |
GGGAATTATTCAGTTGTCGA+AGG | 0.603195 | 6_3:-66568035 | Msa0956990:CDS |
GAAATTCAAGAGATGTCCAT+GGG | 0.603913 | 6_3:-66568334 | Msa0956990:intron |
GAATGGATGCATGGATGATG+AGG | 0.606403 | 6_3:-66570106 | Msa0956990:CDS |
ACAACAATAATATGATCGCA+AGG | 0.609509 | 6_3:+66568196 | None:intergenic |
TCGGAAGACCCAAGTTCTGA+GGG | 0.617413 | 6_3:-66569687 | Msa0956990:CDS |
CAAACGGTCCCTCAGAACTT+GGG | 0.622569 | 6_3:+66569679 | None:intergenic |
TCCAAACCAAGCAAAGCTAA+GGG | 0.624671 | 6_3:-66570993 | Msa0956990:CDS |
TTTCTACTCATGGTATGCAA+GGG | 0.627306 | 6_3:-66569726 | Msa0956990:CDS |
ATGGACGAAGCTTCAGACGA+AGG | 0.631163 | 6_3:-66569938 | Msa0956990:CDS |
TACAAAGTTTCAAAGTACTG+TGG | 0.634037 | 6_3:-66568304 | Msa0956990:CDS |
ACTGTGGAAATGGAAGTGTC+TGG | 0.638067 | 6_3:-66568288 | Msa0956990:CDS |
TATAGCATTCCCATTAGACT+CGG | 0.641750 | 6_3:+66569850 | None:intergenic |
GCTTCGAAACAATGTCTATG+TGG | 0.645082 | 6_3:+66569525 | None:intergenic |
AATGGGGCTAATGAGTGTGA+TGG | 0.645283 | 6_3:-66569899 | Msa0956990:CDS |
CCCAGAAATGATACCAGGTG+TGG | 0.648094 | 6_3:-66569569 | Msa0956990:CDS |
TGTCGAAGGATGTGGCTGAG+AGG | 0.652941 | 6_3:-66568021 | Msa0956990:CDS |
GCAAACCATCCAACAGCTCG+TGG | 0.662133 | 6_3:+66569468 | None:intergenic |
ACAGGGGATTGACCTTGGAG+AGG | 0.670051 | 6_3:-66569604 | Msa0956990:CDS |
AGATAATATGGATGACAATG+GGG | 0.688595 | 6_3:-66569915 | Msa0956990:CDS |
ATACACGGTGAACTGTCACA+TGG | 0.692606 | 6_3:+66570477 | None:intergenic |
GTTGGTATTGATGCTAGCAG+TGG | 0.710979 | 6_3:-66567914 | Msa0956990:CDS |
CACTAAGAAAATCTACAATG+CGG | 0.712293 | 6_3:+66567972 | None:intergenic |
TAATGACAATATTAACATCG+AGG | 0.732342 | 6_3:-66569963 | Msa0956990:CDS |
TGGTATTGATGCTAGCAGTG+GGG | 0.757439 | 6_3:-66567912 | Msa0956990:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTACAGATTTTTTTTTTAAA+TGG | + | chr6_3:66568320-66568339 | None:intergenic | 10.0% |
!!! | TTTTTCTTAAAACTCAATTT+TGG | + | chr6_3:66567841-66567860 | None:intergenic | 15.0% |
!!! | TTTTTTAGAATCAATAAGTT+GGG | + | chr6_3:66568414-66568433 | None:intergenic | 15.0% |
!!! | TTTTTTTAGAATCAATAAGT+TGG | + | chr6_3:66568415-66568434 | None:intergenic | 15.0% |
!! | AATAAATTGATGCTAATTAT+TGG | - | chr6_3:66568434-66568453 | Msa0956990:intron | 15.0% |
!!! | TATCTCTTTTTAATTAATGT+GGG | + | chr6_3:66568580-66568599 | None:intergenic | 15.0% |
!!! | TTATCTCTTTTTAATTAATG+TGG | + | chr6_3:66568581-66568600 | None:intergenic | 15.0% |
!!! | TTTTTTTAAATGGTGAGAAT+TGG | + | chr6_3:66568310-66568329 | None:intergenic | 20.0% |
!! | AATGAATGAAAAAGGTTAAT+GGG | + | chr6_3:66568630-66568649 | None:intergenic | 20.0% |
!! | AAATGAATGAAAAAGGTTAA+TGG | + | chr6_3:66568631-66568650 | None:intergenic | 20.0% |
!! | TTATCTATAATATCATCAGT+AGG | + | chr6_3:66568655-66568674 | None:intergenic | 20.0% |
!! | GTAAGTAAAAAGTGATTATT+AGG | - | chr6_3:66568905-66568924 | Msa0956990:intron | 20.0% |
!!! | ATTGAAAAGTATAAGAATGT+TGG | - | chr6_3:66569594-66569613 | Msa0956990:CDS | 20.0% |
!!! | TCGTATGAATTATGAATTTT+TGG | - | chr6_3:66569860-66569879 | Msa0956990:CDS | 20.0% |
!!! | ATTGTATTTGTTTTTCCTAT+AGG | + | chr6_3:66569909-66569928 | None:intergenic | 20.0% |
!!! | TTTTGGAAATATACTCTTTA+TGG | + | chr6_3:66570113-66570132 | None:intergenic | 20.0% |
! | CATATTTGTTTGTAAGAAGA+TGG | + | chr6_3:66567900-66567919 | None:intergenic | 25.0% |
! | GTCATCAATGTCAAATATAA+TGG | + | chr6_3:66568157-66568176 | None:intergenic | 25.0% |
!! | CCACATTTTCAATATATACA+CGG | + | chr6_3:66568527-66568546 | None:intergenic | 25.0% |
! | AGTAGGAAAATGAATGAAAA+AGG | + | chr6_3:66568638-66568657 | None:intergenic | 25.0% |
! | TAATGTTGAAAATGTGTCTA+AGG | + | chr6_3:66568722-66568741 | None:intergenic | 25.0% |
! | CTAAATTCATCAGATATGAA+TGG | - | chr6_3:66568863-66568882 | Msa0956990:intron | 25.0% |
! | CAAGGTTTCAAATTTATGAT+TGG | - | chr6_3:66568943-66568962 | Msa0956990:intron | 25.0% |
! | TAAAATTATGCTTCTGTTGT+AGG | - | chr6_3:66568966-66568985 | Msa0956990:intron | 25.0% |
! | TAATGACAATATTAACATCG+AGG | - | chr6_3:66569023-66569042 | Msa0956990:intron | 25.0% |
! | TTGCATATAATTTCTACTCA+TGG | - | chr6_3:66569250-66569269 | Msa0956990:intron | 25.0% |
! | GTTATACGCAAATTCAAATA+CGG | + | chr6_3:66569499-66569518 | None:intergenic | 25.0% |
! | AAGGATTTGTATAATCAATC+AGG | - | chr6_3:66569690-66569709 | Msa0956990:CDS | 25.0% |
!!! | ATGAATTTTTGGTGATGTAT+TGG | - | chr6_3:66569871-66569890 | Msa0956990:CDS | 25.0% |
! | ATATCTTAAAAGATGCATGT+TGG | - | chr6_3:66570207-66570226 | Msa0956990:intron | 25.0% |
! | TATCTTAAAAGATGCATGTT+GGG | - | chr6_3:66570208-66570227 | Msa0956990:intron | 25.0% |
! | TGAATAAGTTTGAAGAACTA+TGG | - | chr6_3:66570242-66570261 | Msa0956990:intron | 25.0% |
! | GAATAAGTTTGAAGAACTAT+GGG | - | chr6_3:66570243-66570262 | Msa0956990:intron | 25.0% |
! | TGTATGCAAAAAAAAGAATG+TGG | - | chr6_3:66570317-66570336 | Msa0956990:intron | 25.0% |
! | GTATGCAAAAAAAAGAATGT+GGG | - | chr6_3:66570318-66570337 | Msa0956990:intron | 25.0% |
!!! | AAGATTTTTTCAGAGCATTA+CGG | + | chr6_3:66570615-66570634 | None:intergenic | 25.0% |
!!! | TATTGTTGTTTTGATGTATC+TGG | - | chr6_3:66570804-66570823 | Msa0956990:intron | 25.0% |
! | AAGAATAAAACAACAACTGT+TGG | - | chr6_3:66571054-66571073 | Msa0956990:CDS | 25.0% |
! | ACAGAACAGATTTGTTCATA+AGG | + | chr6_3:66567932-66567951 | None:intergenic | 30.0% |
AACAGAAGAATTCAGTTTGA+AGG | + | chr6_3:66568078-66568097 | None:intergenic | 30.0% | |
CCGTGTATATATTGAAAATG+TGG | - | chr6_3:66568524-66568543 | Msa0956990:intron | 30.0% | |
!! | ATCATATGTGTTGTTGATTC+AGG | - | chr6_3:66568817-66568836 | Msa0956990:intron | 30.0% |
!! | TCATATGTGTTGTTGATTCA+GGG | - | chr6_3:66568818-66568837 | Msa0956990:intron | 30.0% |
! | AGGTATTTACATTTGAAGCA+AGG | - | chr6_3:66568925-66568944 | Msa0956990:intron | 30.0% |
CAATATTAACATCGAGGAAA+TGG | - | chr6_3:66569029-66569048 | Msa0956990:intron | 30.0% | |
GAGATAATATGGATGACAAT+GGG | - | chr6_3:66569070-66569089 | Msa0956990:intron | 30.0% | |
AGATAATATGGATGACAATG+GGG | - | chr6_3:66569071-66569090 | Msa0956990:intron | 30.0% | |
!! | CATCGGTGATATTTTAAAGA+TGG | - | chr6_3:66569170-66569189 | Msa0956990:intron | 30.0% |
TTTCTGTAGATGTAGTTGAA+AGG | - | chr6_3:66569205-66569224 | Msa0956990:intron | 30.0% | |
TCAATCTCAATCAAATCAGT+TGG | + | chr6_3:66569579-66569598 | None:intergenic | 30.0% | |
!! | CAAGTTAGGTTTTGTGAAAA+AGG | - | chr6_3:66569671-66569690 | Msa0956990:CDS | 30.0% |
ATAATCAATCAGGAAGACAA+AGG | - | chr6_3:66569700-66569719 | Msa0956990:CDS | 30.0% | |
ATACTGTAGACAAAGATAAG+AGG | - | chr6_3:66569805-66569824 | Msa0956990:CDS | 30.0% | |
TTGGTTATGATGATTAACAC+CGG | + | chr6_3:66569951-66569970 | None:intergenic | 30.0% | |
! | CATAATCTATGATGTGCTTT+TGG | + | chr6_3:66570130-66570149 | None:intergenic | 30.0% |
GAAGAGATGGTTGAAAAATT+TGG | - | chr6_3:66570265-66570284 | Msa0956990:intron | 30.0% | |
!!! | ATCAAAGGAGAATTTTTTGC+AGG | - | chr6_3:66570352-66570371 | Msa0956990:intron | 30.0% |
! | ATTTTGTCCAGCAATTTCAT+AGG | - | chr6_3:66570452-66570471 | Msa0956990:intron | 30.0% |
CTCGAAATCGAAAATATGTA+AGG | + | chr6_3:66570480-66570499 | None:intergenic | 30.0% | |
AAAAAATCTCCCTTGTAAAC+TGG | + | chr6_3:66570585-66570604 | None:intergenic | 30.0% | |
!! | TACAAAGTTTCAAAGTACTG+TGG | - | chr6_3:66570682-66570701 | Msa0956990:intron | 30.0% |
ATTTCAAATGTTCGTGTCTT+AGG | - | chr6_3:66570749-66570768 | Msa0956990:intron | 30.0% | |
ACAACAATAATATGATCGCA+AGG | + | chr6_3:66570793-66570812 | None:intergenic | 30.0% | |
CTGTGTAAAACTAGATTCTT+GGG | + | chr6_3:66570844-66570863 | None:intergenic | 30.0% | |
ACACAAATGGTTCACAATAT+TGG | - | chr6_3:66570902-66570921 | Msa0956990:intron | 30.0% | |
CACAAATGGTTCACAATATT+GGG | - | chr6_3:66570903-66570922 | Msa0956990:intron | 30.0% | |
TCAAATTACTTCAAGGTATG+CGG | - | chr6_3:66570930-66570949 | Msa0956990:intron | 30.0% | |
CACTAAGAAAATCTACAATG+CGG | + | chr6_3:66571017-66571036 | None:intergenic | 30.0% | |
! | TTGATGACCATATGTGTATG+CGG | - | chr6_3:66568169-66568188 | Msa0956990:CDS | 35.0% |
ATCAGATATGAATGGATGCA+TGG | - | chr6_3:66568871-66568890 | Msa0956990:intron | 35.0% | |
TATGCTTCTGTTGTAGGTTA+TGG | - | chr6_3:66568972-66568991 | Msa0956990:intron | 35.0% | |
TTCAGACGAAGGAGATAATA+TGG | - | chr6_3:66569059-66569078 | Msa0956990:intron | 35.0% | |
GGAGATAATATGGATGACAA+TGG | - | chr6_3:66569069-66569088 | Msa0956990:intron | 35.0% | |
TATAGCATTCCCATTAGACT+CGG | + | chr6_3:66569139-66569158 | None:intergenic | 35.0% | |
GGGAATGCTATAGTCATAAA+TGG | - | chr6_3:66569147-66569166 | Msa0956990:intron | 35.0% | |
GCTATAGTCATAAATGGCAT+CGG | - | chr6_3:66569153-66569172 | Msa0956990:intron | 35.0% | |
ATTTCTACTCATGGTATGCA+AGG | - | chr6_3:66569259-66569278 | Msa0956990:intron | 35.0% | |
TTTCTACTCATGGTATGCAA+GGG | - | chr6_3:66569260-66569279 | Msa0956990:intron | 35.0% | |
! | GGGTAAACAGATTTTCTGTT+CGG | - | chr6_3:66569280-66569299 | Msa0956990:intron | 35.0% |
!! | AGCAAACTTTTGTTTGTTCG+CGG | - | chr6_3:66569343-66569362 | Msa0956990:intron | 35.0% |
!! | TTTGCTATGTGGTCTTTTAC+CGG | - | chr6_3:66569536-66569555 | Msa0956990:CDS | 35.0% |
GTAAGACCATATCAAACGTA+TGG | - | chr6_3:66569618-66569637 | Msa0956990:CDS | 35.0% | |
ATTGCACCATACGTTTGATA+TGG | + | chr6_3:66569627-66569646 | None:intergenic | 35.0% | |
ATATCAAACGTATGGTGCAA+TGG | - | chr6_3:66569626-66569645 | Msa0956990:CDS | 35.0% | |
TTAGTTTCATCTGACTCTTG+CGG | - | chr6_3:66569726-66569745 | Msa0956990:CDS | 35.0% | |
TTTCCTATAGGTTGCATCAA+AGG | + | chr6_3:66569897-66569916 | None:intergenic | 35.0% | |
ACACCGGAGAAAATAACAAA+CGG | + | chr6_3:66569935-66569954 | None:intergenic | 35.0% | |
CTGTTGTAAAGACAACAGTT+TGG | + | chr6_3:66569970-66569989 | None:intergenic | 35.0% | |
CAAACTGTTGTCTTTACAAC+AGG | - | chr6_3:66569968-66569987 | Msa0956990:CDS | 35.0% | |
AGGTTTAGTTATGAGAGAGA+CGG | - | chr6_3:66569988-66570007 | Msa0956990:CDS | 35.0% | |
AGAGACATATGTTTGGTTGT+TGG | - | chr6_3:66570012-66570031 | Msa0956990:intron | 35.0% | |
CCTTTATCCGTAATAACTGA+CGG | - | chr6_3:66570067-66570086 | Msa0956990:intron | 35.0% | |
AACATCACCGTCAGTTATTA+CGG | + | chr6_3:66570077-66570096 | None:intergenic | 35.0% | |
CACATCATAGATTATGTGCT+TGG | - | chr6_3:66570134-66570153 | Msa0956990:CDS | 35.0% | |
TCTGACTATCATTCCAACTA+TGG | - | chr6_3:66570508-66570527 | Msa0956990:intron | 35.0% | |
! | TCGCAAACTAGTTTGCAATA+CGG | + | chr6_3:66570539-66570558 | None:intergenic | 35.0% |
!! | TTTTCAGAGCATTACGGAAA+AGG | + | chr6_3:66570609-66570628 | None:intergenic | 35.0% |
TGAAATTCAAGAGATGTCCA+TGG | - | chr6_3:66570651-66570670 | Msa0956990:intron | 35.0% | |
GAAATTCAAGAGATGTCCAT+GGG | - | chr6_3:66570652-66570671 | Msa0956990:intron | 35.0% | |
AACTTTGTAGATAGAACCCA+TGG | + | chr6_3:66570671-66570690 | None:intergenic | 35.0% | |
!! | GTTTCAAAGTACTGTGGAAA+TGG | - | chr6_3:66570688-66570707 | Msa0956990:intron | 35.0% |
! | CACGAACATTTGAAATCTAC+AGG | + | chr6_3:66570745-66570764 | None:intergenic | 35.0% |
GTAAAACTAGATTCTTGGGA+AGG | + | chr6_3:66570840-66570859 | None:intergenic | 35.0% | |
CCTGTGTAAAACTAGATTCT+TGG | + | chr6_3:66570845-66570864 | None:intergenic | 35.0% | |
!!! | CCAAGAATCTAGTTTTACAC+AGG | - | chr6_3:66570842-66570861 | Msa0956990:intron | 35.0% |
!!! | AGAATCTAGTTTTACACAGG+TGG | - | chr6_3:66570845-66570864 | Msa0956990:intron | 35.0% |
GGGATTCTCAAATTACTTCA+AGG | - | chr6_3:66570923-66570942 | Msa0956990:intron | 35.0% | |
CAAATTACTTCAAGGTATGC+GGG | - | chr6_3:66570931-66570950 | Msa0956990:intron | 35.0% | |
!! | TTCTTAGTGCTGAACTTTTG+AGG | - | chr6_3:66571028-66571047 | Msa0956990:CDS | 35.0% |
ATCCAAACCAAGCAAAGCTA+AGG | - | chr6_3:66567992-66568011 | Msa0956990:CDS | 40.0% | |
TCCAAACCAAGCAAAGCTAA+GGG | - | chr6_3:66567993-66568012 | Msa0956990:CDS | 40.0% | |
! | AAGGGACTCTTTGTGTTGTT+AGG | - | chr6_3:66568011-66568030 | Msa0956990:CDS | 40.0% |
! | ATAAGCACCGCATACACATA+TGG | + | chr6_3:66568179-66568198 | None:intergenic | 40.0% |
GTGTCTAAGGAGATCAAACT+AGG | + | chr6_3:66568709-66568728 | None:intergenic | 40.0% | |
!! | TTGTTGATTCAGGGAGTAGA+AGG | - | chr6_3:66568827-66568846 | Msa0956990:intron | 40.0% |
!! | TGTTGATTCAGGGAGTAGAA+GGG | - | chr6_3:66568828-66568847 | Msa0956990:intron | 40.0% |
!! | GCAAACTTTTGTTTGTTCGC+GGG | - | chr6_3:66569344-66569363 | Msa0956990:intron | 40.0% |
!!! | GGAAGGTTTTAGAGAGAACA+GGG | - | chr6_3:66569365-66569384 | Msa0956990:CDS | 40.0% |
!!! | GAAGGTTTTAGAGAGAACAG+GGG | - | chr6_3:66569366-66569385 | Msa0956990:CDS | 40.0% |
GCTTCGAAACAATGTCTATG+TGG | + | chr6_3:66569464-66569483 | None:intergenic | 40.0% | |
TAGACATTGTTTCGAAGCGT+TGG | - | chr6_3:66569466-66569485 | Msa0956990:CDS | 40.0% | |
! | TCAGGTGGTTTTCACAAGTT+AGG | - | chr6_3:66569657-66569676 | Msa0956990:CDS | 40.0% |
!!! | AGAGGCTTGAACGTCTTTTT+TGG | - | chr6_3:66569823-66569842 | Msa0956990:CDS | 40.0% |
!!! | GAACGTCTTTTTTGGTGTGA+TGG | - | chr6_3:66569831-66569850 | Msa0956990:CDS | 40.0% |
!!! | TGCCCGTTTGTTATTTTCTC+CGG | - | chr6_3:66569929-66569948 | Msa0956990:CDS | 40.0% |
CACCGGAGAAAATAACAAAC+GGG | + | chr6_3:66569934-66569953 | None:intergenic | 40.0% | |
AGACGGAAGAGACATATGTT+TGG | - | chr6_3:66570005-66570024 | Msa0956990:intron | 40.0% | |
CCGTCAGTTATTACGGATAA+AGG | + | chr6_3:66570070-66570089 | None:intergenic | 40.0% | |
TATGTGCTTGGCATCTTCTA+CGG | - | chr6_3:66570146-66570165 | Msa0956990:CDS | 40.0% | |
GGAATGCATCATCGAATGTT+GGG | - | chr6_3:66570167-66570186 | Msa0956990:intron | 40.0% | |
AAGATGCATGTTGGGTGATA+TGG | - | chr6_3:66570216-66570235 | Msa0956990:intron | 40.0% | |
TGAAGAACTATGGGAAGAGA+TGG | - | chr6_3:66570252-66570271 | Msa0956990:intron | 40.0% | |
TGATCCAATTGTTGTCTTGC+AGG | + | chr6_3:66570291-66570310 | None:intergenic | 40.0% | |
GAGGGTTTACATAGTCACAT+AGG | - | chr6_3:66570397-66570416 | Msa0956990:intron | 40.0% | |
! | TAAGGCACCTATGAAATTGC+TGG | + | chr6_3:66570462-66570481 | None:intergenic | 40.0% |
! | CGCAAACTAGTTTGCAATAC+GGG | + | chr6_3:66570538-66570557 | None:intergenic | 40.0% |
! | AGCATCGAACCAGTTTACAA+GGG | - | chr6_3:66570573-66570592 | Msa0956990:intron | 40.0% |
CAAATGTTCGTGTCTTAGGA+TGG | - | chr6_3:66570753-66570772 | Msa0956990:intron | 40.0% | |
GTTCGAGCAAGATACACAAA+TGG | - | chr6_3:66570889-66570908 | Msa0956990:intron | 40.0% | |
GGGAATTATTCAGTTGTCGA+AGG | - | chr6_3:66570951-66570970 | Msa0956990:intron | 40.0% | |
TATTCAGTTGTCGAAGGATG+TGG | - | chr6_3:66570957-66570976 | Msa0956990:intron | 40.0% | |
!! | TTGGTATTGATGCTAGCAGT+GGG | - | chr6_3:66571073-66571092 | Msa0956990:exon | 40.0% |
CTTTAGTCCTCACACAAGTA+GGG | + | chr6_3:66571134-66571153 | None:intergenic | 40.0% | |
CTACTTGTGTGAGGACTAAA+GGG | - | chr6_3:66571133-66571152 | Msa0956990:five_prime_UTR | 40.0% | |
ACTAATCCAATTGTTACGCC+TGG | - | chr6_3:66571162-66571181 | Msa0956990:five_prime_UTR | 40.0% | |
!! | CTTTGCTTGGTTTGGATCTC+AGG | + | chr6_3:66567989-66568008 | None:intergenic | 45.0% |
!! | TCCCTTAGCTTTGCTTGGTT+TGG | + | chr6_3:66567997-66568016 | None:intergenic | 45.0% |
!! | AAGAGTCCCTTAGCTTTGCT+TGG | + | chr6_3:66568002-66568021 | None:intergenic | 45.0% |
GTGAACTGTCACATGGATGA+AGG | + | chr6_3:66568505-66568524 | None:intergenic | 45.0% | |
ATACACGGTGAACTGTCACA+TGG | + | chr6_3:66568512-66568531 | None:intergenic | 45.0% | |
CATTGAGGCAGTTGCAAATC+AGG | + | chr6_3:66568678-66568697 | None:intergenic | 45.0% | |
TTGCAACTGCCTCAATGTTG+TGG | - | chr6_3:66568681-66568700 | Msa0956990:intron | 45.0% | |
! | AACTAGGTGCCACAACATTG+AGG | + | chr6_3:66568693-66568712 | None:intergenic | 45.0% |
GAATGGATGCATGGATGATG+AGG | - | chr6_3:66568880-66568899 | Msa0956990:intron | 45.0% | |
GCTTCTGTTGTAGGTTATGG+AGG | - | chr6_3:66568975-66568994 | Msa0956990:intron | 45.0% | |
TCTGTTGTAGGTTATGGAGG+AGG | - | chr6_3:66568978-66568997 | Msa0956990:intron | 45.0% | |
AATGGGGCTAATGAGTGTGA+TGG | - | chr6_3:66569087-66569106 | Msa0956990:intron | 45.0% | |
AGCGATTCATCCGAGTCTAA+TGG | - | chr6_3:66569126-66569145 | Msa0956990:intron | 45.0% | |
GCGATTCATCCGAGTCTAAT+GGG | - | chr6_3:66569127-66569146 | Msa0956990:intron | 45.0% | |
GCTGCAGAACATTACCCAAA+CGG | + | chr6_3:66569326-66569345 | None:intergenic | 45.0% | |
!! | ACTTTTGTTTGTTCGCGGGA+AGG | - | chr6_3:66569348-66569367 | Msa0956990:CDS | 45.0% |
!!! | GGGAAGGTTTTAGAGAGAAC+AGG | - | chr6_3:66569364-66569383 | Msa0956990:CDS | 45.0% |
GAGAACCCAGAAATGATACC+AGG | - | chr6_3:66569412-66569431 | Msa0956990:CDS | 45.0% | |
CCACACCTGGTATCATTTCT+GGG | + | chr6_3:66569420-66569439 | None:intergenic | 45.0% | |
TCCACACCTGGTATCATTTC+TGG | + | chr6_3:66569421-66569440 | None:intergenic | 45.0% | |
! | TTTTGCAGAACATCCACACC+TGG | + | chr6_3:66569433-66569452 | None:intergenic | 45.0% |
TATAACCACGAGCTGTTGGA+TGG | - | chr6_3:66569513-66569532 | Msa0956990:CDS | 45.0% | |
!! | CTGTTGGATGGTTTGCTATG+TGG | - | chr6_3:66569525-66569544 | Msa0956990:CDS | 45.0% |
!! | GGTGTTAGCTTTCTATGTGC+CGG | + | chr6_3:66569558-66569577 | None:intergenic | 45.0% |
GGTGCAATGGCTAATTCATC+AGG | - | chr6_3:66569639-66569658 | Msa0956990:CDS | 45.0% | |
GCAATGGCTAATTCATCAGG+TGG | - | chr6_3:66569642-66569661 | Msa0956990:CDS | 45.0% | |
TGGCCTTTGATGCAACCTAT+AGG | - | chr6_3:66569891-66569910 | Msa0956990:CDS | 45.0% | |
CATTCATAGCAGTCGCGAAT+TGG | + | chr6_3:66570039-66570058 | None:intergenic | 45.0% | |
CAATTCGCGACTGCTATGAA+TGG | - | chr6_3:66570037-66570056 | Msa0956990:intron | 45.0% | |
CGGAATGCATCATCGAATGT+TGG | - | chr6_3:66570166-66570185 | Msa0956990:intron | 45.0% | |
ATGCATGTTGGGTGATATGG+AGG | - | chr6_3:66570219-66570238 | Msa0956990:intron | 45.0% | |
TTGGCCTGCAAGACAACAAT+TGG | - | chr6_3:66570284-66570303 | Msa0956990:intron | 45.0% | |
! | CAATACGGGTTGACCATAGT+TGG | + | chr6_3:66570524-66570543 | None:intergenic | 45.0% |
! | CAGCATCGAACCAGTTTACA+AGG | - | chr6_3:66570572-66570591 | Msa0956990:intron | 45.0% |
!! | ACTGTGGAAATGGAAGTGTC+TGG | - | chr6_3:66570698-66570717 | Msa0956990:intron | 45.0% |
TGTCTTAGGATGGAGTCGTT+TGG | - | chr6_3:66570763-66570782 | Msa0956990:intron | 45.0% | |
!! | GTTGGTATTGATGCTAGCAG+TGG | - | chr6_3:66571072-66571091 | Msa0956990:exon | 45.0% |
!! | TGGTATTGATGCTAGCAGTG+GGG | - | chr6_3:66571074-66571093 | Msa0956990:exon | 45.0% |
AGTCGTCGACGAAAGTTTAC+TGG | - | chr6_3:66571107-66571126 | Msa0956990:five_prime_UTR | 45.0% | |
CCTTTAGTCCTCACACAAGT+AGG | + | chr6_3:66571135-66571154 | None:intergenic | 45.0% | |
CCTACTTGTGTGAGGACTAA+AGG | - | chr6_3:66571132-66571151 | Msa0956990:five_prime_UTR | 45.0% | |
AATCCAATTGTTACGCCTGG+TGG | - | chr6_3:66571165-66571184 | Msa0956990:five_prime_UTR | 45.0% | |
!!! | ATAAAAATAAAACTTAATTT+TGG | + | chr6_3:66568043-66568062 | None:intergenic | 5.0% |
ATGGACGAAGCTTCAGACGA+AGG | - | chr6_3:66569048-66569067 | Msa0956990:intron | 50.0% | |
TTCGGAAGACCCAAGTTCTG+AGG | - | chr6_3:66569298-66569317 | Msa0956990:intron | 50.0% | |
! | TCGGAAGACCCAAGTTCTGA+GGG | - | chr6_3:66569299-66569318 | Msa0956990:intron | 50.0% |
CAAACGGTCCCTCAGAACTT+GGG | + | chr6_3:66569310-66569329 | None:intergenic | 50.0% | |
!! | CAAGTTCTGAGGGACCGTTT+GGG | - | chr6_3:66569309-66569328 | Msa0956990:intron | 50.0% |
AGAGAACAGGGGATTGACCT+TGG | - | chr6_3:66569377-66569396 | Msa0956990:CDS | 50.0% | |
CCCAGAAATGATACCAGGTG+TGG | - | chr6_3:66569417-66569436 | Msa0956990:CDS | 50.0% | |
TGCGTATAACCACGAGCTGT+TGG | - | chr6_3:66569509-66569528 | Msa0956990:CDS | 50.0% | |
CGCGACTGCTATGAATGGTA+AGG | - | chr6_3:66570042-66570061 | Msa0956990:intron | 50.0% | |
TGGGCGACTGCTCATATCAA+AGG | - | chr6_3:66570337-66570356 | Msa0956990:intron | 50.0% | |
CAGGTATACGAACCACGTCT+CGG | - | chr6_3:66570371-66570390 | Msa0956990:intron | 50.0% | |
TACTGGACCCTACTTGTGTG+AGG | - | chr6_3:66571124-66571143 | Msa0956990:five_prime_UTR | 50.0% | |
TGTGTGAGGACTAAAGGGTG+TGG | - | chr6_3:66571138-66571157 | Msa0956990:five_prime_UTR | 50.0% | |
CTTCCACCAGGCGTAACAAT+TGG | + | chr6_3:66571171-66571190 | None:intergenic | 50.0% | |
CCAAACGGTCCCTCAGAACT+TGG | + | chr6_3:66569311-66569330 | None:intergenic | 55.0% | |
!! | CCAAGTTCTGAGGGACCGTT+TGG | - | chr6_3:66569308-66569327 | Msa0956990:intron | 55.0% |
ACAGGGGATTGACCTTGGAG+AGG | - | chr6_3:66569382-66569401 | Msa0956990:CDS | 55.0% | |
GCAAACCATCCAACAGCTCG+TGG | + | chr6_3:66569521-66569540 | None:intergenic | 55.0% | |
TAAACCCTCACACCGAGACG+TGG | + | chr6_3:66570386-66570405 | None:intergenic | 55.0% | |
TGTCGAAGGATGTGGCTGAG+AGG | - | chr6_3:66570965-66570984 | Msa0956990:intron | 55.0% | |
GTCGAAGGATGTGGCTGAGA+GGG | - | chr6_3:66570966-66570985 | Msa0956990:intron | 55.0% | |
GGGGATTGACCTTGGAGAGG+CGG | - | chr6_3:66569385-66569404 | Msa0956990:CDS | 60.0% | |
TTCTCGCTTCCGCCTCTCCA+AGG | + | chr6_3:66569397-66569416 | None:intergenic | 60.0% | |
! | ACGAACCACGTCTCGGTGTG+AGG | - | chr6_3:66570378-66570397 | Msa0956990:intron | 60.0% |
! | CGAACCACGTCTCGGTGTGA+GGG | - | chr6_3:66570379-66570398 | Msa0956990:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 66567815 | 66571193 | 66567815 | ID=Msa0956990;Name=Msa0956990 |
chr6_3 | mRNA | 66567815 | 66571193 | 66567815 | ID=Msa0956990-mRNA-1;Parent=Msa0956990;Name=Msa0956990-mRNA-1;_AED=0.21;_eAED=0.21;_QI=118|0.2|0.33|0.5|1|1|6|0|440 |
chr6_3 | exon | 66567815 | 66567817 | 66567815 | ID=Msa0956990-mRNA-1:exon:12410;Parent=Msa0956990-mRNA-1 |
chr6_3 | exon | 66567913 | 66568346 | 66567913 | ID=Msa0956990-mRNA-1:exon:12409;Parent=Msa0956990-mRNA-1 |
chr6_3 | exon | 66569348 | 66570020 | 66569348 | ID=Msa0956990-mRNA-1:exon:12408;Parent=Msa0956990-mRNA-1 |
chr6_3 | exon | 66570104 | 66570169 | 66570104 | ID=Msa0956990-mRNA-1:exon:12407;Parent=Msa0956990-mRNA-1 |
chr6_3 | exon | 66570463 | 66570509 | 66570463 | ID=Msa0956990-mRNA-1:exon:12406;Parent=Msa0956990-mRNA-1 |
chr6_3 | exon | 66570976 | 66571193 | 66570976 | ID=Msa0956990-mRNA-1:exon:12405;Parent=Msa0956990-mRNA-1 |
chr6_3 | five_prime_UTR | 66571076 | 66571193 | 66571076 | ID=Msa0956990-mRNA-1:five_prime_utr;Parent=Msa0956990-mRNA-1 |
chr6_3 | CDS | 66570976 | 66571075 | 66570976 | ID=Msa0956990-mRNA-1:cds;Parent=Msa0956990-mRNA-1 |
chr6_3 | CDS | 66570463 | 66570509 | 66570463 | ID=Msa0956990-mRNA-1:cds;Parent=Msa0956990-mRNA-1 |
chr6_3 | CDS | 66570104 | 66570169 | 66570104 | ID=Msa0956990-mRNA-1:cds;Parent=Msa0956990-mRNA-1 |
chr6_3 | CDS | 66569348 | 66570020 | 66569348 | ID=Msa0956990-mRNA-1:cds;Parent=Msa0956990-mRNA-1 |
chr6_3 | CDS | 66567913 | 66568346 | 66567913 | ID=Msa0956990-mRNA-1:cds;Parent=Msa0956990-mRNA-1 |
chr6_3 | CDS | 66567815 | 66567817 | 66567815 | ID=Msa0956990-mRNA-1:cds;Parent=Msa0956990-mRNA-1 |
Gene Sequence |
Protein sequence |