AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0958480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0958480 MtrunA17_Chr6g0485431 89.474 361 38 0 58 418 1 361 0.0 663
Msa0958480 MtrunA17_Chr1g0189391 45.075 335 152 7 115 418 1 334 6.41e-80 249
Msa0958480 MtrunA17_Chr7g0249311 43.089 123 68 2 160 282 342 462 9.26e-24 103
Msa0958480 MtrunA17_Chr7g0249311 40.741 81 46 2 212 292 180 258 2.71e-13 71.6
Msa0958480 MtrunA17_Chr5g0418191 50.000 98 40 2 197 294 306 394 2.76e-23 101
Msa0958480 MtrunA17_Chr5g0418191 40.385 104 51 5 183 282 119 215 1.75e-13 72.0
Msa0958480 MtrunA17_Chr7g0263531 45.745 94 50 1 195 288 345 437 9.93e-23 99.8
Msa0958480 MtrunA17_Chr7g0263531 46.667 75 38 2 212 286 190 262 7.92e-14 72.8
Msa0958480 MtrunA17_Chr4g0042831 56.000 75 32 1 197 271 264 337 3.06e-22 97.8
Msa0958480 MtrunA17_Chr4g0042831 45.833 72 37 2 205 275 138 208 8.36e-13 69.3
Msa0958480 MtrunA17_Chr7g0218081 45.833 96 51 1 176 271 375 469 3.56e-22 98.6
Msa0958480 MtrunA17_Chr7g0218081 48.387 62 30 2 210 271 227 286 6.12e-12 67.4
Msa0958480 MtrunA17_Chr3g0129321 35.606 132 77 3 141 272 55 178 6.86e-22 93.2
Msa0958480 MtrunA17_Chr4g0051881 49.383 81 40 1 197 277 164 243 1.70e-21 94.7
Msa0958480 MtrunA17_Chr7g0249301 55.263 76 33 1 196 271 277 351 1.99e-21 95.1
Msa0958480 MtrunA17_Chr7g0249301 40.000 85 49 2 210 294 61 143 6.97e-13 69.7
Msa0958480 MtrunA17_Chr7g0270191 43.182 88 49 1 198 285 132 218 2.26e-21 93.6
Msa0958480 MtrunA17_Chr5g0445311 34.211 152 96 2 120 271 276 423 3.46e-21 95.9
Msa0958480 MtrunA17_Chr3g0101131 37.179 156 82 5 131 271 320 474 3.83e-21 95.9
Msa0958480 MtrunA17_Chr1g0194481 46.835 79 41 1 197 275 144 221 1.03e-20 92.4
Msa0958480 MtrunA17_Chr5g0443131 48.148 81 41 1 197 277 143 222 1.95e-20 91.3
Msa0958480 MtrunA17_Chr3g0079691 45.631 103 55 1 169 271 453 554 1.38e-19 91.3
Msa0958480 MtrunA17_Chr3g0079691 46.154 65 33 2 212 276 281 343 9.41e-12 67.0
Msa0958480 MtrunA17_Chr4g0004911 52.632 76 35 1 197 272 322 396 2.30e-19 90.1
Msa0958480 MtrunA17_Chr4g0004911 44.615 65 35 1 212 276 185 248 4.89e-13 70.5
Msa0958480 MtrunA17_Chr2g0294231 44.444 81 44 1 197 277 189 268 2.99e-19 89.0
Msa0958480 MtrunA17_Chr3g0129361 48.611 72 36 1 197 268 130 200 3.91e-19 85.5
Msa0958480 MtrunA17_Chr5g0418781 48.718 78 36 2 197 271 110 186 7.08e-19 86.3
Msa0958480 MtrunA17_Chr8g0383351 47.945 73 36 2 197 268 145 216 7.16e-19 85.1
Msa0958480 MtrunA17_Chr4g0068541 44.872 78 42 1 198 275 195 271 1.12e-18 87.4
Msa0958480 MtrunA17_Chr7g0248721 50.685 73 34 2 196 268 126 196 1.71e-18 84.0
Msa0958480 MtrunA17_Chr8g0383251 46.753 77 40 1 198 274 95 170 3.25e-18 82.0
Msa0958480 MtrunA17_Chr5g0447701 35.714 126 80 1 146 271 187 311 3.35e-18 85.9
Msa0958480 MtrunA17_Chr7g0243891 53.333 75 34 1 197 271 360 433 3.38e-18 86.7
Msa0958480 MtrunA17_Chr7g0243891 38.750 80 47 2 207 286 212 289 1.14e-11 66.6
Msa0958480 MtrunA17_Chr5g0432161 48.193 83 42 1 189 271 399 480 3.83e-18 86.7
Msa0958480 MtrunA17_Chr5g0432161 43.750 80 43 2 209 288 242 319 8.51e-11 63.9
Msa0958480 MtrunA17_Chr3g0106491 52.000 75 35 1 197 271 351 424 6.72e-18 85.5
Msa0958480 MtrunA17_Chr3g0106491 42.105 76 42 2 202 277 189 262 3.77e-12 67.8
Msa0958480 MtrunA17_Chr8g0335811 47.222 72 37 1 197 268 140 210 1.53e-17 81.3
Msa0958480 MtrunA17_Chr7g0224801 50.000 68 33 1 201 268 83 149 2.57e-17 79.3
Msa0958480 MtrunA17_Chr1g0150801 47.297 74 38 1 195 268 86 158 4.11e-17 78.6
Msa0958480 MtrunA17_Chr1g0188941 46.667 75 39 1 197 271 37 110 5.51e-17 76.6
Msa0958480 MtrunA17_Chr8g0386241 46.479 71 37 1 198 268 90 159 6.85e-16 75.5
Msa0958480 MtrunA17_Chr3g0099641 40.517 116 55 5 191 305 232 334 8.47e-16 79.0
Msa0958480 MtrunA17_Chr4g0074001 44.444 81 44 1 197 277 345 424 2.13e-15 78.2
Msa0958480 MtrunA17_Chr7g0238921 34.921 126 72 3 144 268 64 180 2.47e-15 76.6
Msa0958480 MtrunA17_Chr4g0060271 46.053 76 39 2 198 272 242 316 8.03e-15 76.6
Msa0958480 MtrunA17_Chr2g0293481 38.776 98 51 3 196 285 252 348 8.49e-15 76.3
Msa0958480 MtrunA17_Chr2g0284321 51.613 62 28 2 211 271 35 95 1.11e-14 72.8
Msa0958480 MtrunA17_Chr8g0379461 49.206 63 30 2 211 272 76 137 1.28e-14 73.2
Msa0958480 MtrunA17_Chr7g0216891 30.846 201 108 7 106 289 105 291 1.46e-14 75.5
Msa0958480 MtrunA17_Chr7g0270831 46.667 75 38 2 198 271 203 276 1.58e-14 75.1
Msa0958480 MtrunA17_Chr8g0348311 47.561 82 38 4 204 283 147 225 1.58e-14 74.3
Msa0958480 MtrunA17_Chr5g0401821 34.821 112 60 3 167 277 166 265 2.06e-14 73.2
Msa0958480 MtrunA17_Chr1g0147881 49.254 67 32 2 212 277 263 328 3.10e-14 73.6
Msa0958480 MtrunA17_Chr7g0270051 46.250 80 35 3 199 271 35 113 3.83e-14 72.4
Msa0958480 MtrunA17_Chr2g0319961 50.794 63 29 2 211 272 80 141 4.30e-14 72.0
Msa0958480 MtrunA17_Chr2g0322391 46.667 75 38 2 198 271 336 409 4.80e-14 73.9
Msa0958480 MtrunA17_Chr2g0288871 45.333 75 39 2 198 271 292 365 5.08e-14 73.9
Msa0958480 MtrunA17_Chr7g0248691 50.000 78 35 3 207 283 150 224 6.33e-14 72.4
Msa0958480 MtrunA17_Chr4g0071521 47.059 68 34 2 208 274 242 308 8.81e-14 72.0
Msa0958480 MtrunA17_Chr3g0139021 39.806 103 49 3 167 268 281 371 1.53e-13 72.0
Msa0958480 MtrunA17_Chr1g0150281 39.773 88 47 4 187 269 112 198 2.05e-13 70.5
Msa0958480 MtrunA17_Chr4g0051181 45.000 80 42 2 194 272 226 304 2.28e-13 71.6
Msa0958480 MtrunA17_Chr8g0387501 39.583 96 48 4 212 306 130 216 2.29e-13 70.1
Msa0958480 MtrunA17_Chr2g0333851 35.789 95 57 3 198 289 154 247 3.65e-13 70.1
Msa0958480 MtrunA17_Chr2g0302391 46.154 78 40 2 212 288 212 288 3.67e-13 70.9
Msa0958480 MtrunA17_Chr4g0053281 35.714 98 50 3 174 270 240 325 4.83e-13 69.7
Msa0958480 MtrunA17_Chr4g0025061 42.500 80 44 2 198 276 347 425 6.29e-13 70.5
Msa0958480 MtrunA17_Chr8g0387981 43.750 80 36 3 195 266 111 189 1.28e-12 68.9
Msa0958480 MtrunA17_Chr7g0228941 51.724 58 26 2 212 268 53 109 2.12e-12 63.9
Msa0958480 MtrunA17_Chr1g0184691 50.847 59 27 2 212 269 294 351 2.25e-12 68.2
Msa0958480 MtrunA17_Chr1g0202461 47.945 73 34 3 212 283 262 331 7.35e-12 66.6
Msa0958480 MtrunA17_Chr1g0150271 33.684 95 59 3 180 271 68 161 1.16e-11 64.7
Msa0958480 MtrunA17_Chr5g0447711 37.037 81 50 1 191 271 210 289 9.79e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0958480 AT5G41570.1 53.425 73 33 1 196 268 83 154 3.02e-22 93.6
Msa0958480 AT4G18170.1 56.000 75 32 1 197 271 158 231 3.04e-22 97.1
Msa0958480 AT1G29860.1 56.757 74 31 1 198 271 123 195 3.08e-22 96.3
Msa0958480 AT1G13960.1 45.361 97 52 1 175 271 373 468 3.12e-22 99.4
Msa0958480 AT1G13960.1 46.575 73 36 3 205 276 222 292 7.16e-13 70.5
Msa0958480 AT1G13960.2 54.667 75 33 1 197 271 242 315 4.82e-22 97.1
Msa0958480 AT1G13960.2 46.575 73 36 3 205 276 69 139 2.06e-12 68.6
Msa0958480 AT2G03340.1 54.667 75 33 1 197 271 401 474 8.77e-22 97.8
Msa0958480 AT2G03340.1 47.761 67 32 3 206 271 244 308 2.97e-12 68.6
Msa0958480 AT1G64000.1 53.521 71 32 1 198 268 101 170 9.56e-22 92.8
Msa0958480 AT5G46350.1 54.667 75 33 1 197 271 169 242 9.73e-22 95.9
Msa0958480 AT5G56270.1 38.194 144 85 3 128 271 407 546 2.52e-20 94.0
Msa0958480 AT5G56270.1 50.877 57 26 2 212 268 274 328 3.36e-11 65.9
Msa0958480 AT2G47260.1 47.436 78 40 1 198 275 161 237 2.86e-20 91.7
Msa0958480 AT1G69310.4 46.591 88 40 3 197 278 133 219 3.75e-20 90.5
Msa0958480 AT1G69310.2 46.591 88 40 3 197 278 133 219 3.75e-20 90.5
Msa0958480 AT1G69310.1 46.591 88 40 3 197 278 133 219 3.75e-20 90.5
Msa0958480 AT5G49520.1 47.436 78 40 1 198 275 208 284 4.34e-20 92.0
Msa0958480 AT3G01080.2 53.333 75 34 1 197 271 330 403 4.44e-20 92.4
Msa0958480 AT3G01080.2 48.387 62 30 2 210 271 204 263 8.77e-11 63.9
Msa0958480 AT3G01080.1 53.333 75 34 1 197 271 292 365 5.07e-20 92.0
Msa0958480 AT3G01080.1 49.180 61 29 2 211 271 167 225 9.80e-11 63.5
Msa0958480 AT2G46130.1 51.389 72 34 1 197 268 16 86 1.28e-19 84.3
Msa0958480 AT5G07100.1 54.667 75 33 1 197 271 220 293 1.54e-19 89.0
Msa0958480 AT5G07100.1 33.636 110 64 4 188 294 91 194 3.78e-11 64.3
Msa0958480 AT5G07100.2 54.667 75 33 1 197 271 127 200 1.63e-19 87.0
Msa0958480 AT5G07100.4 54.667 75 33 1 197 271 127 200 1.63e-19 87.0
Msa0958480 AT5G07100.5 54.667 75 33 1 197 271 127 200 1.63e-19 87.0
Msa0958480 AT5G07100.3 54.667 75 33 1 197 271 127 200 1.63e-19 87.0
Msa0958480 AT1G55600.1 50.000 74 36 1 198 271 294 366 4.60e-19 89.7
Msa0958480 AT5G64810.1 32.847 137 84 2 132 268 38 166 5.91e-19 84.7
Msa0958480 AT4G26640.7 52.000 75 35 1 197 271 327 400 1.05e-18 88.6
Msa0958480 AT4G26640.2 51.316 76 36 1 197 272 367 441 1.11e-18 88.6
Msa0958480 AT4G26640.1 51.316 76 36 1 197 272 295 369 1.28e-18 88.2
Msa0958480 AT4G26640.5 51.316 76 36 1 197 272 191 265 1.43e-18 87.4
Msa0958480 AT4G26640.6 51.316 76 36 1 197 272 191 265 1.43e-18 87.4
Msa0958480 AT4G26640.4 51.316 76 36 1 197 272 191 265 1.43e-18 87.4
Msa0958480 AT4G26640.3 51.316 76 36 1 197 272 191 265 1.43e-18 87.4
Msa0958480 AT2G04880.2 50.000 74 36 1 198 271 270 342 1.69e-18 87.8
Msa0958480 AT2G04880.2 40.217 92 51 3 205 294 105 194 3.75e-11 65.1
Msa0958480 AT2G38470.1 52.000 75 35 1 197 271 348 421 1.97e-18 87.8
Msa0958480 AT2G04880.1 50.000 74 36 1 198 271 294 366 2.06e-18 87.4
Msa0958480 AT2G04880.1 39.216 102 56 4 205 302 105 204 5.14e-11 64.7
Msa0958480 AT2G21900.1 44.156 77 39 2 200 273 95 170 2.09e-18 83.6
Msa0958480 AT4G39410.1 50.000 72 35 1 197 268 209 279 2.75e-18 85.5
Msa0958480 AT2G37260.3 52.174 69 32 1 200 268 258 325 3.18e-18 85.9
Msa0958480 AT2G37260.3 36.220 127 56 5 212 338 86 187 2.69e-12 68.2
Msa0958480 AT5G26170.1 45.070 71 38 1 198 268 100 169 3.33e-18 82.0
Msa0958480 AT2G37260.2 52.174 69 32 1 200 268 256 323 3.45e-18 85.9
Msa0958480 AT2G37260.2 36.220 127 56 5 212 338 84 185 3.13e-12 67.8
Msa0958480 AT2G37260.1 54.688 64 28 1 205 268 343 405 3.65e-18 86.7
Msa0958480 AT2G37260.1 36.220 127 56 5 212 338 166 267 2.62e-12 68.6
Msa0958480 AT2G30250.1 45.679 81 43 1 197 277 314 393 4.40e-18 85.9
Msa0958480 AT2G44745.1 47.222 72 37 1 197 268 131 201 6.25e-18 82.8
Msa0958480 AT3G62340.1 46.154 78 41 1 196 273 103 179 6.65e-18 84.0
Msa0958480 AT4G30935.1 48.718 78 39 1 212 289 332 408 2.04e-17 84.3
Msa0958480 AT5G13080.1 47.887 71 36 1 198 268 54 123 9.67e-17 77.4
Msa0958480 AT4G26440.1 40.404 99 58 1 173 271 334 431 1.09e-16 82.4
Msa0958480 AT4G23550.1 38.655 119 61 5 194 304 124 238 2.23e-16 79.7
Msa0958480 AT4G01250.1 42.991 107 47 5 211 304 128 233 5.84e-16 78.6
Msa0958480 AT1G69310.3 43.182 88 39 4 197 278 133 215 1.53e-15 77.0
Msa0958480 AT1G29280.1 49.231 65 31 2 211 274 74 137 2.06e-15 76.3
Msa0958480 AT2G46130.2 47.222 72 33 2 197 268 16 82 5.16e-15 71.2
Msa0958480 AT3G01970.1 41.667 72 41 1 198 269 52 122 1.31e-14 71.2
Msa0958480 AT1G30650.1 49.206 63 30 2 211 272 217 278 2.63e-14 74.7
Msa0958480 AT2G34830.1 48.529 68 31 3 211 277 215 279 2.84e-14 74.7
Msa0958480 AT2G34830.2 48.529 68 31 3 211 277 224 288 2.99e-14 74.7
Msa0958480 AT1G62300.1 48.000 75 37 2 198 271 299 372 3.37e-14 74.7
Msa0958480 AT1G68150.1 41.304 92 52 2 194 284 218 308 4.20e-14 73.9
Msa0958480 AT3G58710.1 40.385 104 57 4 211 311 71 172 4.44e-14 72.4
Msa0958480 AT3G58710.2 40.385 104 57 4 211 311 70 171 4.63e-14 72.4
Msa0958480 AT5G15130.2 46.053 76 39 2 198 272 172 246 5.24e-14 74.3
Msa0958480 AT4G04450.2 46.667 75 38 2 198 271 185 258 5.39e-14 73.9
Msa0958480 AT5G15130.1 46.053 76 39 2 198 272 214 288 6.14e-14 73.9
Msa0958480 AT2G25000.2 46.032 63 32 2 210 271 102 163 6.59e-14 71.2
Msa0958480 AT2G25000.4 46.032 63 32 2 210 271 102 163 6.59e-14 71.2
Msa0958480 AT2G25000.3 46.032 63 32 2 210 271 124 185 1.02e-13 71.2
Msa0958480 AT2G25000.1 46.032 63 32 2 210 271 145 206 1.43e-13 70.9
Msa0958480 AT4G04450.1 46.667 75 38 2 198 271 279 352 1.53e-13 72.8
Msa0958480 AT4G31550.2 39.216 102 49 3 168 268 213 302 1.54e-13 71.6
Msa0958480 AT2G30590.1 34.000 150 81 6 136 268 222 370 1.64e-13 72.0
Msa0958480 AT4G22070.4 46.667 75 38 2 198 271 284 357 1.81e-13 72.4
Msa0958480 AT4G22070.3 46.667 75 38 2 198 271 284 357 1.81e-13 72.4
Msa0958480 AT4G22070.2 46.667 75 38 2 198 271 284 357 1.81e-13 72.4
Msa0958480 AT4G22070.1 46.667 75 38 2 198 271 284 357 1.81e-13 72.4
Msa0958480 AT2G23320.1 40.541 111 42 5 169 270 204 299 2.45e-13 70.9
Msa0958480 AT4G31550.1 53.448 58 25 2 212 268 247 303 4.04e-13 70.5
Msa0958480 AT1G18860.1 43.529 85 45 3 188 271 217 299 5.01e-13 71.2
Msa0958480 AT5G52830.1 42.308 104 49 4 207 309 161 254 5.84e-13 70.1
Msa0958480 AT5G43290.1 40.476 84 48 2 211 293 114 196 8.13e-13 68.9
Msa0958480 AT4G24240.1 36.697 109 62 4 172 274 237 344 8.45e-13 69.7
Msa0958480 AT4G31800.2 44.444 63 33 2 210 271 110 171 1.04e-12 68.2
Msa0958480 AT5G28650.1 38.235 102 50 3 168 268 230 319 1.36e-12 68.9
Msa0958480 AT4G31800.1 44.444 63 33 2 210 271 175 236 1.56e-12 68.6
Msa0958480 AT4G11070.2 31.250 144 79 6 183 308 76 217 3.57e-12 67.0
Msa0958480 AT4G11070.1 31.250 144 79 6 183 308 108 249 4.95e-12 67.0
Msa0958480 AT3G04670.1 38.235 102 50 3 168 268 230 319 6.92e-12 66.6
Msa0958480 AT2G24570.1 51.724 58 26 2 212 268 244 300 8.02e-12 66.2
Msa0958480 AT1G80840.1 41.270 63 35 2 210 271 145 206 9.44e-12 65.9
Msa0958480 AT5G45050.4 46.875 64 32 2 211 273 1041 1103 1.11e-11 67.4
Msa0958480 AT5G45050.1 46.875 64 32 2 211 273 1180 1242 1.14e-11 67.4
Msa0958480 AT5G45050.2 46.875 64 32 2 211 273 1152 1214 1.20e-11 67.4
Msa0958480 AT5G24110.1 47.541 61 28 2 210 267 112 171 2.26e-11 64.7

Find 91 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAACTTGTTGTTCATCTA+AGG 0.247246 6_3:-72447598 None:intergenic
GGGAAGGAAATATTTGAAAT+TGG 0.258518 6_3:-72447402 None:intergenic
CATCAGCTGCAACAACTTCT+TGG 0.283729 6_3:-72447560 None:intergenic
TATGAAACAATTACATATTT+CGG 0.286298 6_3:-72448700 None:intergenic
ATGCCTTATGGATATATTAA+TGG 0.289062 6_3:+72448961 Msa0958480:CDS
TATTTGAAATCCACCAATAC+TGG 0.290258 6_3:-72449040 None:intergenic
TATATATACCTGAGAATAAT+CGG 0.300770 6_3:-72445463 None:intergenic
TTCAAGAAAGGATTATTATT+AGG 0.304221 6_3:-72448916 None:intergenic
TCAATTCTGAACACTACTTT+TGG 0.317569 6_3:-72447872 None:intergenic
CGAAGAAAATCATGAAGTTC+TGG 0.347870 6_3:-72449075 None:intergenic
AATACCATGATGATGCCTTA+TGG 0.355278 6_3:+72448949 Msa0958480:CDS
GGAAACCAAGTACTAAATTC+TGG 0.369352 6_3:+72445372 Msa0958480:CDS
TCTGAAAGTTATGAATCTTA+TGG 0.371782 6_3:+72448877 Msa0958480:CDS
GGTTATCGTTGGCATAAGTA+TGG 0.380213 6_3:+72447920 Msa0958480:CDS
CCTAAATATCATTCATTACT+AGG 0.380869 6_3:-72449180 None:intergenic
TCGTTGGCTTCATGATTAAT+TGG 0.383142 6_3:-72449153 None:intergenic
AGTGTAGTACTTGACTTTGT+TGG 0.385433 6_3:-72448769 None:intergenic
GAGTTGATTGCTCGGCAATA+AGG 0.389254 6_3:+72445394 Msa0958480:CDS
TATGTAATTGTTTCATATGA+AGG 0.393620 6_3:+72448706 Msa0958480:CDS
ATCCATTAGGCTGTTGTTGA+TGG 0.395630 6_3:+72447327 Msa0958480:intron
CAAGTTACAAATACAACTAT+TGG 0.398555 6_3:+72447612 Msa0958480:CDS
AAGCAACATCATTCCTTCAA+TGG 0.416911 6_3:-72447649 None:intergenic
CAACTCCAGAATTTAGTACT+TGG 0.423817 6_3:-72445377 None:intergenic
TTGGATGTTGAACTTCATCT+TGG 0.424960 6_3:-72447383 None:intergenic
TGTGAGAAAACAGGTGGAAA+GGG 0.431043 6_3:+72448666 Msa0958480:CDS
GCATCTTCACGATAATTCAT+TGG 0.435145 6_3:-72447531 None:intergenic
TCCTTCTCCCGATTATTCTC+AGG 0.437382 6_3:+72445455 Msa0958480:CDS
GATGGTTTCCACATGGCAAC+GGG 0.443847 6_3:+72447345 Msa0958480:CDS
CAAGCTGTTCCCAGTATTGG+TGG 0.453491 6_3:+72449030 Msa0958480:CDS
ATCAGCTGCAACAACTTCTT+GGG 0.455443 6_3:-72447559 None:intergenic
TCTCAAGCTGTTCCCAGTAT+TGG 0.455665 6_3:+72449027 Msa0958480:CDS
GGTGAGGAGGTGTGAAAGGT+TGG 0.471015 6_3:-72448852 None:intergenic
GGTGTGAAAGGTTGGGTCAT+AGG 0.474536 6_3:-72448844 None:intergenic
TTCCACATGGCAACGGGAGG+AGG 0.481747 6_3:+72447351 Msa0958480:CDS
TTATTGACCATGTTCAAGAA+AGG 0.487320 6_3:-72448928 None:intergenic
ATTGGTGCAGCACCTTCAAA+AGG 0.488078 6_3:-72449135 None:intergenic
GTCCTTGATCAAGTGTTGTT+GGG 0.488952 6_3:-72447422 None:intergenic
GCTTGAGAGGCAGCAATTGA+AGG 0.494366 6_3:-72449012 None:intergenic
CTTATGGTAAGAACTGTACT+TGG 0.502973 6_3:+72448893 Msa0958480:CDS
GTACTTGATCGATTTAAATG+AGG 0.506847 6_3:+72445428 Msa0958480:CDS
TTCCCAACAACACTTGATCA+AGG 0.508819 6_3:+72447420 Msa0958480:CDS
GTTGAAGCAAGTTCCATTGA+AGG 0.510335 6_3:+72447636 Msa0958480:CDS
GTTGTTGTCGTCGTCGTCCA+TGG 0.510749 6_3:-72445337 None:intergenic
GCTAAACGCTGAAATTCTAA+AGG 0.517982 6_3:+72447491 Msa0958480:CDS
CATAATGATACTAGTGCTAG+TGG 0.520978 6_3:+72447675 Msa0958480:CDS
AACCTGTAATGTGAGAAAAC+AGG 0.528589 6_3:+72448657 Msa0958480:CDS
AATGAAGACAAAGTGAATGA+TGG 0.529985 6_3:+72447899 Msa0958480:CDS
TTGATCAAGTGTTGTTGGGA+AGG 0.530594 6_3:-72447418 None:intergenic
GTGAGGAGGTGTGAAAGGTT+GGG 0.531143 6_3:-72448851 None:intergenic
CACCTATATGTCTCATACCA+TGG 0.531735 6_3:+72445320 None:intergenic
ATGTGAGAAAACAGGTGGAA+AGG 0.535021 6_3:+72448665 Msa0958480:CDS
TAATAATCCTTTCTTGAACA+TGG 0.535267 6_3:+72448921 Msa0958480:CDS
AAATCATGAAGTTCTGGTAG+TGG 0.536148 6_3:-72449069 None:intergenic
TGATGGTTTCCACATGGCAA+CGG 0.539953 6_3:+72447344 Msa0958480:CDS
ATATATACCTGAGAATAATC+GGG 0.550091 6_3:-72445462 None:intergenic
TGTCCATTAATATATCCATA+AGG 0.552023 6_3:-72448964 None:intergenic
TGTCCTTGATCAAGTGTTGT+TGG 0.552454 6_3:-72447423 None:intergenic
AATACTGGGAACAGCTTGAG+AGG 0.558169 6_3:-72449025 None:intergenic
TCATGAAGTTCTGGTAGTGG+TGG 0.567685 6_3:-72449066 None:intergenic
GAGCGGTGAGGAGGTGTGAA+AGG 0.568345 6_3:-72448856 None:intergenic
TTCATTACTAGGACTGTCGT+TGG 0.572830 6_3:-72449169 None:intergenic
TGGGTCATAGGCAATGCAAA+AGG 0.578767 6_3:-72448832 None:intergenic
AAGGAAATGCTAAATACCCT+AGG 0.580382 6_3:+72447957 Msa0958480:CDS
ATTTGAAATCCACCAATACT+GGG 0.584480 6_3:-72449039 None:intergenic
GCAACATTTATCATGGTGCA+AGG 0.584736 6_3:-72447848 None:intergenic
AAATTCTGGAGTTGATTGCT+CGG 0.585351 6_3:+72445386 Msa0958480:CDS
GAAATTCTAAAGGCTAGGAA+AGG 0.587867 6_3:+72447501 Msa0958480:CDS
ACGCTGAAATTCTAAAGGCT+AGG 0.591343 6_3:+72447496 Msa0958480:CDS
ACCTGAGAATAATCGGGAGA+AGG 0.596196 6_3:-72445456 None:intergenic
TAATTGCATTACTTTGCACA+TGG 0.597072 6_3:-72447467 None:intergenic
TTGATTGCTCGGCAATAAGG+AGG 0.597125 6_3:+72445397 Msa0958480:CDS
TATGGACGCAAGGAGATCAA+AGG 0.600725 6_3:+72447938 Msa0958480:CDS
TGCATTATAGGGGATACTAC+AGG 0.601431 6_3:+72448623 Msa0958480:intron
CACCTCCTCCCGTTGCCATG+TGG 0.601831 6_3:-72447353 None:intergenic
GCTGCAACAACTTCTTGGGT+AGG 0.614907 6_3:-72447555 None:intergenic
TTGGCATAAGTATGGACGCA+AGG 0.617304 6_3:+72447928 Msa0958480:CDS
CTAGTGGATCTTCTTCACAA+AGG 0.623228 6_3:+72447691 Msa0958480:CDS
TAACTTTCAGAGCGGTGAGG+AGG 0.625278 6_3:-72448865 None:intergenic
TATGAAGGCAAACATAATCA+CGG 0.626212 6_3:+72448721 Msa0958480:CDS
AAGTGAATGATGGTTATCGT+TGG 0.626452 6_3:+72447909 Msa0958480:CDS
GTCATAGGCAATGCAAAAGG+TGG 0.645286 6_3:-72448829 None:intergenic
CTGTAATGTGAGAAAACAGG+TGG 0.647364 6_3:+72448660 Msa0958480:CDS
TGATTGCTCGGCAATAAGGA+GGG 0.648861 6_3:+72445398 Msa0958480:CDS
CAACATTTATCATGGTGCAA+GGG 0.652471 6_3:-72447847 None:intergenic
ATATCCATAAGGCATCATCA+TGG 0.655849 6_3:-72448953 None:intergenic
GGTTTCCACATGGCAACGGG+AGG 0.656503 6_3:+72447348 Msa0958480:CDS
TGTTGTTGATGGTTTCCACA+TGG 0.683427 6_3:+72447338 Msa0958480:CDS
ACAACACTTGATCAAGGACA+TGG 0.685805 6_3:+72447426 Msa0958480:CDS
TCATAACTTTCAGAGCGGTG+AGG 0.687777 6_3:-72448868 None:intergenic
AAGATTCATAACTTTCAGAG+CGG 0.728852 6_3:-72448873 None:intergenic
CACTGACAACAGTAGCACGT+AGG 0.750828 6_3:+72448788 Msa0958480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTAAATAATAAATTT+TGG - chr6_3:72448449-72448468 None:intergenic 0.0%
!! TATTATTATATAATACATGT+TGG - chr6_3:72445808-72445827 None:intergenic 10.0%
!!! ATATAAATTTTACTTTTCAA+GGG - chr6_3:72445918-72445937 None:intergenic 10.0%
!!! AATATAAATTTTACTTTTCA+AGG - chr6_3:72445919-72445938 None:intergenic 10.0%
!!! AATTAATTTTTCTTAAATGA+TGG - chr6_3:72446058-72446077 None:intergenic 10.0%
!!! GTTGTTTTATATTTTATAAT+AGG + chr6_3:72446322-72446341 Msa0958480:intron 10.0%
!!! TATTATATTTGCTATATTAT+TGG - chr6_3:72446892-72446911 None:intergenic 10.0%
!! TAATTTGATATTAAATTTGT+GGG + chr6_3:72448383-72448402 Msa0958480:intron 10.0%
!!! AAATTTGGATTAGTTTATAA+TGG - chr6_3:72445621-72445640 None:intergenic 15.0%
!! AATTTCCTATTGAAAAATAA+TGG - chr6_3:72445700-72445719 None:intergenic 15.0%
!! AAATATTTAAACATGACAAA+CGG + chr6_3:72445756-72445775 Msa0958480:intron 15.0%
!! AGTGCATATTTAATTATTAA+GGG - chr6_3:72445978-72445997 None:intergenic 15.0%
!! TAGTGCATATTTAATTATTA+AGG - chr6_3:72445979-72445998 None:intergenic 15.0%
!!! TAAAAATGTTACATTGTTTT+TGG - chr6_3:72447034-72447053 None:intergenic 15.0%
!!! AAACAATGTAACATTTTTAT+AGG + chr6_3:72447035-72447054 Msa0958480:intron 15.0%
!! TTTATAGGTAAATTTATTGA+AGG + chr6_3:72447050-72447069 Msa0958480:intron 15.0%
!! TTATAGGTAAATTTATTGAA+GGG + chr6_3:72447051-72447070 Msa0958480:intron 15.0%
!! TAGTATAAATTATAGTTTCA+TGG + chr6_3:72447123-72447142 Msa0958480:intron 15.0%
!! AGTATAAATTATAGTTTCAT+GGG + chr6_3:72447124-72447143 Msa0958480:intron 15.0%
!! TAAAAAAAATCATTTGATGA+TGG - chr6_3:72447179-72447198 None:intergenic 15.0%
!! TATTTGTTTCAAACAAAAAA+TGG + chr6_3:72447743-72447762 Msa0958480:intron 15.0%
!! AAACTTCTAATTATAAAGAA+CGG - chr6_3:72448155-72448174 None:intergenic 15.0%
!! GTAATTTGATATTAAATTTG+TGG + chr6_3:72448382-72448401 Msa0958480:intron 15.0%
!! AATTTGATATTAAATTTGTG+GGG + chr6_3:72448384-72448403 Msa0958480:intron 15.0%
!! ATTAATATTGTATGCATTAT+AGG + chr6_3:72448611-72448630 Msa0958480:intron 15.0%
!! TTAATATTGTATGCATTATA+GGG + chr6_3:72448612-72448631 Msa0958480:intron 15.0%
!! TATGAAACAATTACATATTT+CGG - chr6_3:72448703-72448722 None:intergenic 15.0%
!!! GATTTTTTTTTGTTATGATA+GGG - chr6_3:72448750-72448769 None:intergenic 15.0%
!! TATATATACCTGAGAATAAT+CGG - chr6_3:72445466-72445485 None:intergenic 20.0%
!!! TGTATATTTTAACATAAGAG+GGG - chr6_3:72446512-72446531 None:intergenic 20.0%
!!! GTGTATATTTTAACATAAGA+GGG - chr6_3:72446511-72446530 None:intergenic 20.0%
!!! AGTGTATATTTTAACATAAG+AGG - chr6_3:72446510-72446529 None:intergenic 20.0%
!! ATATTTAATTATTAAGGGAG+GGG - chr6_3:72445973-72445992 None:intergenic 20.0%
!! CATATTTAATTATTAAGGGA+GGG - chr6_3:72445974-72445993 None:intergenic 20.0%
!!! AGTGTATATTTTAACATAAG+AGG + chr6_3:72446510-72446529 Msa0958480:intron 20.0%
!!! GTGTATATTTTAACATAAGA+GGG + chr6_3:72446511-72446530 Msa0958480:intron 20.0%
!!! TGTATATTTTAACATAAGAG+GGG + chr6_3:72446512-72446531 Msa0958480:intron 20.0%
!!! TCTAATATGTTTTGAATAAG+AGG + chr6_3:72446583-72446602 Msa0958480:intron 20.0%
!!! CTAATATGTTTTGAATAAGA+GGG + chr6_3:72446584-72446603 Msa0958480:intron 20.0%
!!! TAATATGTTTTGAATAAGAG+GGG + chr6_3:72446585-72446604 Msa0958480:intron 20.0%
!!! AGTGTATATTTTAACATAAG+AGG + chr6_3:72446510-72446529 Msa0958480:intron 20.0%
!!! GTGTATATTTTAACATAAGA+GGG + chr6_3:72446511-72446530 Msa0958480:intron 20.0%
!!! TGTATATTTTAACATAAGAG+GGG + chr6_3:72446512-72446531 Msa0958480:intron 20.0%
!! CTACATATAAAAAGAATACA+TGG - chr6_3:72447106-72447125 None:intergenic 20.0%
!! AACTTCTAATTATAAAGAAC+GGG - chr6_3:72448154-72448173 None:intergenic 20.0%
!!! TATACTTTGAGATGATTTTA+AGG + chr6_3:72448307-72448326 Msa0958480:intron 20.0%
!! ATGATGTAAATATTGTTCAT+TGG + chr6_3:72448532-72448551 Msa0958480:intron 20.0%
!! AATATTGTTCATTGGAATTA+AGG + chr6_3:72448540-72448559 Msa0958480:intron 20.0%
!! ATATTTATGTATATGCTACA+TGG - chr6_3:72448574-72448593 None:intergenic 20.0%
!! TAATATTGTATGCATTATAG+GGG + chr6_3:72448613-72448632 Msa0958480:intron 20.0%
!! TATGTAATTGTTTCATATGA+AGG + chr6_3:72448706-72448725 Msa0958480:CDS 20.0%
!!! GGATTTTTTTTTGTTATGAT+AGG - chr6_3:72448751-72448770 None:intergenic 20.0%
!! TTCAAGAAAGGATTATTATT+AGG - chr6_3:72448919-72448938 None:intergenic 20.0%
! ATATATACCTGAGAATAATC+GGG - chr6_3:72445465-72445484 None:intergenic 25.0%
!!! TTGATCATTTTTTGTTGCAT+TGG - chr6_3:72445502-72445521 None:intergenic 25.0%
! GGTAGAAAATGATGTAAATT+TGG - chr6_3:72445636-72445655 None:intergenic 25.0%
!! TTTTAATAATCACATAAGCG+AGG - chr6_3:72445660-72445679 None:intergenic 25.0%
!!! AAATTTTACTTTTCAAGGGA+GGG - chr6_3:72445914-72445933 None:intergenic 25.0%
!!! TAAATTTTACTTTTCAAGGG+AGG - chr6_3:72445915-72445934 None:intergenic 25.0%
! GTAATTCAAGCATCTTATAA+GGG - chr6_3:72445947-72445966 None:intergenic 25.0%
! TGTAATTCAAGCATCTTATA+AGG - chr6_3:72445948-72445967 None:intergenic 25.0%
! TATTTAATTATTAAGGGAGG+GGG - chr6_3:72445972-72445991 None:intergenic 25.0%
! GCATATTTAATTATTAAGGG+AGG - chr6_3:72445975-72445994 None:intergenic 25.0%
! TTACTAAAGACAATAAAGCA+TGG - chr6_3:72446174-72446193 None:intergenic 25.0%
! TTCGAAAAAAATAGTATTGC+GGG - chr6_3:72446429-72446448 None:intergenic 25.0%
! CTTCGAAAAAAATAGTATTG+CGG - chr6_3:72446430-72446449 None:intergenic 25.0%
! CAAGTTACAAATACAACTAT+TGG + chr6_3:72447612-72447631 Msa0958480:CDS 25.0%
! AAAAGGTTAATGATTACCTA+GGG - chr6_3:72447976-72447995 None:intergenic 25.0%
! AAAAAGGTTAATGATTACCT+AGG - chr6_3:72447977-72447996 None:intergenic 25.0%
! ATATATGATTCAAGACATCA+TGG + chr6_3:72448083-72448102 Msa0958480:intron 25.0%
! ACTTCTAATTATAAAGAACG+GGG - chr6_3:72448153-72448172 None:intergenic 25.0%
! ATAAATTTATGTCACTGTCT+TGG - chr6_3:72448200-72448219 None:intergenic 25.0%
! GGTGAAAAATCGATAATTAA+GGG - chr6_3:72448428-72448447 None:intergenic 25.0%
! TGGTGAAAAATCGATAATTA+AGG - chr6_3:72448429-72448448 None:intergenic 25.0%
! TCTGAAAGTTATGAATCTTA+TGG + chr6_3:72448877-72448896 Msa0958480:CDS 25.0%
! TAATAATCCTTTCTTGAACA+TGG + chr6_3:72448921-72448940 Msa0958480:CDS 25.0%
! ATGCCTTATGGATATATTAA+TGG + chr6_3:72448961-72448980 Msa0958480:CDS 25.0%
! TGTCCATTAATATATCCATA+AGG - chr6_3:72448967-72448986 None:intergenic 25.0%
!! ATGATTTTCTTCGACTTAAT+GGG + chr6_3:72449085-72449104 Msa0958480:CDS 25.0%
! GTACTTGATCGATTTAAATG+AGG + chr6_3:72445428-72445447 Msa0958480:CDS 30.0%
!! ACGCACCATTATTTTTCAAT+AGG + chr6_3:72445692-72445711 Msa0958480:intron 30.0%
!!! TATTTTAACATAAGAGGGGA+GGG - chr6_3:72446516-72446535 None:intergenic 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG - chr6_3:72446515-72446534 None:intergenic 30.0%
!! AATTTTACTTTTCAAGGGAG+GGG - chr6_3:72445913-72445932 None:intergenic 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG + chr6_3:72446515-72446534 Msa0958480:intron 30.0%
ATGTAATTCAAGCTTCTCTT+AGG + chr6_3:72446541-72446560 Msa0958480:intron 30.0%
TGTAATTCAAGCTTCTCTTA+GGG + chr6_3:72446542-72446561 Msa0958480:intron 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG + chr6_3:72446515-72446534 Msa0958480:intron 30.0%
!!! TATTTTAACATAAGAGGGGA+GGG + chr6_3:72446516-72446535 Msa0958480:intron 30.0%
TGTAATTCAAGCATCTTTGA+GGG + chr6_3:72446645-72446664 Msa0958480:intron 30.0%
CTCTTATCTTTCTTCTTATG+CGG + chr6_3:72446916-72446935 Msa0958480:intron 30.0%
GTTGTTGGTGTAATTGAAAA+AGG - chr6_3:72446998-72447017 None:intergenic 30.0%
GTAATTCGATTGAATCCATT+AGG + chr6_3:72447314-72447333 Msa0958480:intron 30.0%
! GGGAAGGAAATATTTGAAAT+TGG - chr6_3:72447405-72447424 None:intergenic 30.0%
TAATTGCATTACTTTGCACA+TGG - chr6_3:72447470-72447489 None:intergenic 30.0%
!! TGTAACTTGTTGTTCATCTA+AGG - chr6_3:72447601-72447620 None:intergenic 30.0%
TCCTAATTATTATGCAATGC+AGG + chr6_3:72447789-72447808 Msa0958480:intron 30.0%
TCCTGCATTGCATAATAATT+AGG - chr6_3:72447793-72447812 None:intergenic 30.0%
! TCAATTCTGAACACTACTTT+TGG - chr6_3:72447875-72447894 None:intergenic 30.0%
AATGAAGACAAAGTGAATGA+TGG + chr6_3:72447899-72447918 Msa0958480:CDS 30.0%
! TAATCATTAACCTTTTTCCC+TGG + chr6_3:72447980-72447999 Msa0958480:intron 30.0%
! TTTTAATGCATTATTCGCCT+TGG + chr6_3:72448042-72448061 Msa0958480:intron 30.0%
CTTCTAATTATAAAGAACGG+GGG - chr6_3:72448152-72448171 None:intergenic 30.0%
! GTCACATTTGAGACAATAAA+CGG - chr6_3:72448236-72448255 None:intergenic 30.0%
!! ACGATAAATCACTTTTAGCA+GGG - chr6_3:72448351-72448370 None:intergenic 30.0%
!! TACGATAAATCACTTTTAGC+AGG - chr6_3:72448352-72448371 None:intergenic 30.0%
TATGAAGGCAAACATAATCA+CGG + chr6_3:72448721-72448740 Msa0958480:CDS 30.0%
AAGATTCATAACTTTCAGAG+CGG - chr6_3:72448876-72448895 None:intergenic 30.0%
TTATTGACCATGTTCAAGAA+AGG - chr6_3:72448931-72448950 None:intergenic 30.0%
! ATTTGAAATCCACCAATACT+GGG - chr6_3:72449042-72449061 None:intergenic 30.0%
! TATTTGAAATCCACCAATAC+TGG - chr6_3:72449043-72449062 None:intergenic 30.0%
! CATGATTTTCTTCGACTTAA+TGG + chr6_3:72449084-72449103 Msa0958480:CDS 30.0%
GACAACAACAACAACAACAA+GGG + chr6_3:72445351-72445370 Msa0958480:CDS 35.0%
GGAAACCAAGTACTAAATTC+TGG + chr6_3:72445372-72445391 Msa0958480:CDS 35.0%
CAACTCCAGAATTTAGTACT+TGG - chr6_3:72445380-72445399 None:intergenic 35.0%
!! AAATTCTGGAGTTGATTGCT+CGG + chr6_3:72445386-72445405 Msa0958480:CDS 35.0%
TAATAATCACATAAGCGAGG+TGG - chr6_3:72445657-72445676 None:intergenic 35.0%
! TGACAAACGGATTCCTAATT+AGG + chr6_3:72445769-72445788 Msa0958480:intron 35.0%
ATTGAATCGAAGGCCTAATT+AGG - chr6_3:72445785-72445804 None:intergenic 35.0%
TACATGTTGGATTGAATCGA+AGG - chr6_3:72445795-72445814 None:intergenic 35.0%
!! ATTTTAACATAAGAGGGGAG+GGG - chr6_3:72446517-72446536 None:intergenic 35.0%
TTCAAGCATCTTATAAGGGA+GGG - chr6_3:72445943-72445962 None:intergenic 35.0%
ATTCAAGCATCTTATAAGGG+AGG - chr6_3:72445944-72445963 None:intergenic 35.0%
GTAATTCAAGCTTCTCTTAG+GGG + chr6_3:72446543-72446562 Msa0958480:intron 35.0%
!! ATTTTAACATAAGAGGGGAG+GGG + chr6_3:72446517-72446536 Msa0958480:intron 35.0%
CTGTAATTCAAGCATCTTTG+AGG + chr6_3:72446644-72446663 Msa0958480:intron 35.0%
GTAATTCAAGCATCTTTGAG+GGG + chr6_3:72446646-72446665 Msa0958480:intron 35.0%
!! GGTCATATTTGTTGTGTTGT+TGG - chr6_3:72447013-72447032 None:intergenic 35.0%
TTGGATGTTGAACTTCATCT+TGG - chr6_3:72447386-72447405 None:intergenic 35.0%
GCTAAACGCTGAAATTCTAA+AGG + chr6_3:72447491-72447510 Msa0958480:CDS 35.0%
! GAAATTCTAAAGGCTAGGAA+AGG + chr6_3:72447501-72447520 Msa0958480:CDS 35.0%
GCATCTTCACGATAATTCAT+TGG - chr6_3:72447534-72447553 None:intergenic 35.0%
AAGCAACATCATTCCTTCAA+TGG - chr6_3:72447652-72447671 None:intergenic 35.0%
CATAATGATACTAGTGCTAG+TGG + chr6_3:72447675-72447694 Msa0958480:CDS 35.0%
TTATTATGCAATGCAGGAAG+AGG + chr6_3:72447795-72447814 Msa0958480:intron 35.0%
CAACATTTATCATGGTGCAA+GGG - chr6_3:72447850-72447869 None:intergenic 35.0%
! TTTTGGCGCAACATTTATCA+TGG - chr6_3:72447858-72447877 None:intergenic 35.0%
AAGTGAATGATGGTTATCGT+TGG + chr6_3:72447909-72447928 Msa0958480:CDS 35.0%
AAGGAAATGCTAAATACCCT+AGG + chr6_3:72447957-72447976 Msa0958480:CDS 35.0%
CCTCTTTCATATATACACCA+AGG - chr6_3:72448062-72448081 None:intergenic 35.0%
! CCTTGGTGTATATATGAAAG+AGG + chr6_3:72448059-72448078 Msa0958480:intron 35.0%
!! CGATAAATCACTTTTAGCAG+GGG - chr6_3:72448350-72448369 None:intergenic 35.0%
AACCTGTAATGTGAGAAAAC+AGG + chr6_3:72448657-72448676 Msa0958480:CDS 35.0%
AGTGTAGTACTTGACTTTGT+TGG - chr6_3:72448772-72448791 None:intergenic 35.0%
CTTATGGTAAGAACTGTACT+TGG + chr6_3:72448893-72448912 Msa0958480:CDS 35.0%
! AATACCATGATGATGCCTTA+TGG + chr6_3:72448949-72448968 Msa0958480:CDS 35.0%
! ATATCCATAAGGCATCATCA+TGG - chr6_3:72448956-72448975 None:intergenic 35.0%
! AAATCATGAAGTTCTGGTAG+TGG - chr6_3:72449072-72449091 None:intergenic 35.0%
CGAAGAAAATCATGAAGTTC+TGG - chr6_3:72449078-72449097 None:intergenic 35.0%
! GCTAGAATGTTTCCTTTTGA+AGG + chr6_3:72449123-72449142 Msa0958480:CDS 35.0%
!! TCGTTGGCTTCATGATTAAT+TGG - chr6_3:72449156-72449175 None:intergenic 35.0%
CGACAACAACAACAACAACA+AGG + chr6_3:72445350-72445369 Msa0958480:CDS 40.0%
! TTTTTGTTGCATTGGAGCAG+AGG - chr6_3:72445494-72445513 None:intergenic 40.0%
GTAACTCAAGCTTCCTTGAA+GGG - chr6_3:72445857-72445876 None:intergenic 40.0%
TGTAACTCAAGCTTCCTTGA+AGG - chr6_3:72445858-72445877 None:intergenic 40.0%
TCAAGCATCTTATAAGGGAG+GGG - chr6_3:72445942-72445961 None:intergenic 40.0%
!! TGTTTTGAATAAGAGGGGAG+TGG + chr6_3:72446590-72446609 Msa0958480:intron 40.0%
ATCCATTAGGCTGTTGTTGA+TGG + chr6_3:72447327-72447346 Msa0958480:intron 40.0%
AACCATCAACAACAGCCTAA+TGG - chr6_3:72447332-72447351 None:intergenic 40.0%
!! TGTTGTTGATGGTTTCCACA+TGG + chr6_3:72447338-72447357 Msa0958480:CDS 40.0%
! TTGATCAAGTGTTGTTGGGA+AGG - chr6_3:72447421-72447440 None:intergenic 40.0%
TTCCCAACAACACTTGATCA+AGG + chr6_3:72447420-72447439 Msa0958480:CDS 40.0%
! GTCCTTGATCAAGTGTTGTT+GGG - chr6_3:72447425-72447444 None:intergenic 40.0%
! TGTCCTTGATCAAGTGTTGT+TGG - chr6_3:72447426-72447445 None:intergenic 40.0%
ACAACACTTGATCAAGGACA+TGG + chr6_3:72447426-72447445 Msa0958480:CDS 40.0%
! ACGCTGAAATTCTAAAGGCT+AGG + chr6_3:72447496-72447515 Msa0958480:CDS 40.0%
ATCAGCTGCAACAACTTCTT+GGG - chr6_3:72447562-72447581 None:intergenic 40.0%
TGCAGCTGATGAAGCAAAAA+CGG + chr6_3:72447572-72447591 Msa0958480:CDS 40.0%
GTTGAAGCAAGTTCCATTGA+AGG + chr6_3:72447636-72447655 Msa0958480:CDS 40.0%
! CTAGTGGATCTTCTTCACAA+AGG + chr6_3:72447691-72447710 Msa0958480:CDS 40.0%
GCAACATTTATCATGGTGCA+AGG - chr6_3:72447851-72447870 None:intergenic 40.0%
GGTTATCGTTGGCATAAGTA+TGG + chr6_3:72447920-72447939 Msa0958480:CDS 40.0%
! ACATACTTGCATTGACACCA+GGG - chr6_3:72448000-72448019 None:intergenic 40.0%
TGCATTATAGGGGATACTAC+AGG + chr6_3:72448623-72448642 Msa0958480:intron 40.0%
! CACCTGTTTTCTCACATTAC+AGG - chr6_3:72448662-72448681 None:intergenic 40.0%
CTGTAATGTGAGAAAACAGG+TGG + chr6_3:72448660-72448679 Msa0958480:CDS 40.0%
ATGTGAGAAAACAGGTGGAA+AGG + chr6_3:72448665-72448684 Msa0958480:CDS 40.0%
TGTGAGAAAACAGGTGGAAA+GGG + chr6_3:72448666-72448685 Msa0958480:CDS 40.0%
TTCATTACTAGGACTGTCGT+TGG - chr6_3:72449172-72449191 None:intergenic 40.0%
! GAGTTGATTGCTCGGCAATA+AGG + chr6_3:72445394-72445413 Msa0958480:CDS 45.0%
TTGATTGCTCGGCAATAAGG+AGG + chr6_3:72445397-72445416 Msa0958480:CDS 45.0%
TGATTGCTCGGCAATAAGGA+GGG + chr6_3:72445398-72445417 Msa0958480:CDS 45.0%
TCCTTCTCCCGATTATTCTC+AGG + chr6_3:72445455-72445474 Msa0958480:CDS 45.0%
ACCTGAGAATAATCGGGAGA+AGG - chr6_3:72445459-72445478 None:intergenic 45.0%
ATTCAAGCTTCTCTTAGGGG+AGG + chr6_3:72446546-72446565 Msa0958480:intron 45.0%
TTCAAGCTTCTCTTAGGGGA+GGG + chr6_3:72446547-72446566 Msa0958480:intron 45.0%
! ATTCAAGCATCTTTGAGGGG+AGG + chr6_3:72446649-72446668 Msa0958480:intron 45.0%
TGATGGTTTCCACATGGCAA+CGG + chr6_3:72447344-72447363 Msa0958480:CDS 45.0%
CATCAGCTGCAACAACTTCT+TGG - chr6_3:72447563-72447582 None:intergenic 45.0%
TTGGCATAAGTATGGACGCA+AGG + chr6_3:72447928-72447947 Msa0958480:CDS 45.0%
TATGGACGCAAGGAGATCAA+AGG + chr6_3:72447938-72447957 Msa0958480:CDS 45.0%
! TGCATTGACACCAGGGAAAA+AGG - chr6_3:72447993-72448012 None:intergenic 45.0%
! CACATACTTGCATTGACACC+AGG - chr6_3:72448001-72448020 None:intergenic 45.0%
GTCATAGGCAATGCAAAAGG+TGG - chr6_3:72448832-72448851 None:intergenic 45.0%
TGGGTCATAGGCAATGCAAA+AGG - chr6_3:72448835-72448854 None:intergenic 45.0%
TCATAACTTTCAGAGCGGTG+AGG - chr6_3:72448871-72448890 None:intergenic 45.0%
AATACTGGGAACAGCTTGAG+AGG - chr6_3:72449028-72449047 None:intergenic 45.0%
TCTCAAGCTGTTCCCAGTAT+TGG + chr6_3:72449027-72449046 Msa0958480:CDS 45.0%
!! TCATGAAGTTCTGGTAGTGG+TGG - chr6_3:72449069-72449088 None:intergenic 45.0%
ATTGGTGCAGCACCTTCAAA+AGG - chr6_3:72449138-72449157 None:intergenic 45.0%
ATTAGACTCCCCTCCCTTCA+AGG + chr6_3:72445841-72445860 Msa0958480:intron 50.0%
TCAAGCTTCCTTGAAGGGAG+GGG - chr6_3:72445852-72445871 None:intergenic 50.0%
CTCAAGCTTCCTTGAAGGGA+GGG - chr6_3:72445853-72445872 None:intergenic 50.0%
ACTCAAGCTTCCTTGAAGGG+AGG - chr6_3:72445854-72445873 None:intergenic 50.0%
TCAAGCTTCTCTTAGGGGAG+GGG + chr6_3:72446548-72446567 Msa0958480:intron 50.0%
GATGGTTTCCACATGGCAAC+GGG + chr6_3:72447345-72447364 Msa0958480:CDS 50.0%
GCTGCAACAACTTCTTGGGT+AGG - chr6_3:72447558-72447577 None:intergenic 50.0%
CACTGACAACAGTAGCACGT+AGG + chr6_3:72448788-72448807 Msa0958480:CDS 50.0%
GGTGTGAAAGGTTGGGTCAT+AGG - chr6_3:72448847-72448866 None:intergenic 50.0%
! GTGAGGAGGTGTGAAAGGTT+GGG - chr6_3:72448854-72448873 None:intergenic 50.0%
TAACTTTCAGAGCGGTGAGG+AGG - chr6_3:72448868-72448887 None:intergenic 50.0%
GCTTGAGAGGCAGCAATTGA+AGG - chr6_3:72449015-72449034 None:intergenic 50.0%
! CAAGCTGTTCCCAGTATTGG+TGG + chr6_3:72449030-72449049 Msa0958480:CDS 50.0%
GTTGTTGTCGTCGTCGTCCA+TGG - chr6_3:72445340-72445359 None:intergenic 55.0%
! GGTGAGGAGGTGTGAAAGGT+TGG - chr6_3:72448855-72448874 None:intergenic 55.0%
GGTTTCCACATGGCAACGGG+AGG + chr6_3:72447348-72447367 Msa0958480:CDS 60.0%
TTCCACATGGCAACGGGAGG+AGG + chr6_3:72447351-72447370 Msa0958480:CDS 60.0%
!! ACGGGGGCGTCAGTAGTTGT+TGG - chr6_3:72448136-72448155 None:intergenic 60.0%
! GAGCGGTGAGGAGGTGTGAA+AGG - chr6_3:72448859-72448878 None:intergenic 60.0%
CACCTCCTCCCGTTGCCATG+TGG - chr6_3:72447356-72447375 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 72445327 72449194 72445327 ID=Msa0958480;Name=Msa0958480
chr6_3 mRNA 72445327 72449194 72445327 ID=Msa0958480-mRNA-1;Parent=Msa0958480;Name=Msa0958480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|4|0|418
chr6_3 exon 72445327 72445476 72445327 ID=Msa0958480-mRNA-1:exon:13139;Parent=Msa0958480-mRNA-1
chr6_3 exon 72447336 72447712 72447336 ID=Msa0958480-mRNA-1:exon:13140;Parent=Msa0958480-mRNA-1
chr6_3 exon 72447811 72447978 72447811 ID=Msa0958480-mRNA-1:exon:13141;Parent=Msa0958480-mRNA-1
chr6_3 exon 72448633 72449194 72448633 ID=Msa0958480-mRNA-1:exon:13142;Parent=Msa0958480-mRNA-1
chr6_3 CDS 72445327 72445476 72445327 ID=Msa0958480-mRNA-1:cds;Parent=Msa0958480-mRNA-1
chr6_3 CDS 72447336 72447712 72447336 ID=Msa0958480-mRNA-1:cds;Parent=Msa0958480-mRNA-1
chr6_3 CDS 72447811 72447978 72447811 ID=Msa0958480-mRNA-1:cds;Parent=Msa0958480-mRNA-1
chr6_3 CDS 72448633 72449194 72448633 ID=Msa0958480-mRNA-1:cds;Parent=Msa0958480-mRNA-1
Gene Sequence

>Msa0958480

ATGTCTCATACCATGGACGACGACGACAACAACAACAACAACAAGGGAAACCAAGTACTAAATTCTGGAGTTGATTGCTCGGCAATAAGGAGGGAGAAAAAGTACTTGATCGATTTAAATGAGGTTTGTCCTTCTCCCGATTATTCTCAGGCTGTTGTTGATGGTTTCCACATGGCAACGGGAGGAGGTGTAGAACTCCAAGATGAAGTTCAACATCCAATTTCAAATATTTCCTTCCCAACAACACTTGATCAAGGACATGGTGCAGAAAAAGAACAAGTCCATGTGCAAAGTAATGCAATTACGCTAAACGCTGAAATTCTAAAGGCTAGGAAAGGAAAGATGCCAATGAATTATCGTGAAGATGCACCTACCCAAGAAGTTGTTGCAGCTGATGAAGCAAAAACGGTATCCTTAGATGAACAACAAGTTACAAATACAACTATTGGTGTTGAAGCAAGTTCCATTGAAGGAATGATGTTGCTTCAACATAATGATACTAGTGCTAGTGGATCTTCTTCACAAAGGAAGAGGAAAATTGACTTCTCTGAACACTATAAACTCCCTTGCACCATGATAAATGTTGCGCCAAAAGTAGTGTTCAGAATTGAAATCAATGAAGACAAAGTGAATGATGGTTATCGTTGGCATAAGTATGGACGCAAGGAGATCAAAGGAAATGCTAAATACCCTAGGGGATACTACAGGTGTACAACAAAAACCTGTAATGTGAGAAAACAGGTGGAAAGGGATGCACAGAATCCGAAATATGTAATTGTTTCATATGAAGGCAAACATAATCACGGATTCCCTATCATAACAAAAAAAAATCCAACAAAGTCAAGTACTACACTGACAACAGTAGCACGTAGGAATGCTAGCATTGTATCGCCACCTTTTGCATTGCCTATGACCCAACCTTTCACACCTCCTCACCGCTCTGAAAGTTATGAATCTTATGGTAAGAACTGTACTTGGCCTAATAATAATCCTTTCTTGAACATGGTCAATAATACCATGATGATGCCTTATGGATATATTAATGGACAACATTTTCGAGATTGTTATGCTGCTCCTTCAATTGCTGCCTCTCAAGCTGTTCCCAGTATTGGTGGATTTCAAATATCTCCACCACTACCAGAACTTCATGATTTTCTTCGACTTAATGGGTACAATATTGCTGCTGCTAGAATGTTTCCTTTTGAAGGTGCTGCACCAATTAATCATGAAGCCAACGACAGTCCTAGTAATGAATGA
Protein sequence

>Msa0958480

MSHTMDDDDNNNNNKGNQVLNSGVDCSAIRREKKYLIDLNEVCPSPDYSQAVVDGFHMATGGGVELQDEVQHPISNISFPTTLDQGHGAEKEQVHVQSNAITLNAEILKARKGKMPMNYREDAPTQEVVAADEAKTVSLDEQQVTNTTIGVEASSIEGMMLLQHNDTSASGSSSQRKRKIDFSEHYKLPCTMINVAPKVVFRIEINEDKVNDGYRWHKYGRKEIKGNAKYPRGYYRCTTKTCNVRKQVERDAQNPKYVIVSYEGKHNHGFPIITKKNPTKSSTTLTTVARRNASIVSPPFALPMTQPFTPPHRSESYESYGKNCTWPNNNPFLNMVNNTMMMPYGYINGQHFRDCYAAPSIAASQAVPSIGGFQISPPLPELHDFLRLNGYNIAAARMFPFEGAAPINHEANDSPSNE*