AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0958530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0958530 MtrunA17_Chr6g0485431 85.976 328 46 0 28 355 34 361 0.0 573
Msa0958530 MtrunA17_Chr1g0189391 45.075 335 152 7 52 355 1 334 1.52e-80 249
Msa0958530 MtrunA17_Chr7g0249311 43.089 123 68 2 97 219 342 462 6.17e-24 103
Msa0958530 MtrunA17_Chr7g0249311 40.741 81 46 2 149 229 180 258 1.78e-13 71.6
Msa0958530 MtrunA17_Chr5g0418191 50.000 98 40 2 134 231 306 394 1.71e-23 100
Msa0958530 MtrunA17_Chr5g0418191 40.385 104 51 5 120 219 119 215 1.37e-13 71.6
Msa0958530 MtrunA17_Chr7g0263531 45.745 94 50 1 132 225 345 437 5.20e-23 99.4
Msa0958530 MtrunA17_Chr7g0263531 46.667 75 38 2 149 223 190 262 6.11e-14 72.8
Msa0958530 MtrunA17_Chr7g0218081 45.833 96 51 1 113 208 375 469 1.87e-22 98.2
Msa0958530 MtrunA17_Chr7g0218081 48.387 62 30 2 147 208 227 286 4.73e-12 67.0
Msa0958530 MtrunA17_Chr4g0042831 56.000 75 32 1 134 208 264 337 1.92e-22 97.4
Msa0958530 MtrunA17_Chr4g0042831 47.059 68 34 2 142 208 138 204 7.30e-13 68.9
Msa0958530 MtrunA17_Chr3g0129321 37.600 125 70 3 84 208 61 177 5.07e-22 92.4
Msa0958530 MtrunA17_Chr7g0249301 55.263 76 33 1 133 208 277 351 1.15e-21 95.1
Msa0958530 MtrunA17_Chr7g0249301 40.000 85 49 2 147 231 61 143 6.69e-13 69.3
Msa0958530 MtrunA17_Chr7g0270191 43.182 88 49 1 135 222 132 218 1.38e-21 93.6
Msa0958530 MtrunA17_Chr4g0051881 49.383 81 40 1 134 214 164 243 1.43e-21 94.0
Msa0958530 MtrunA17_Chr5g0445311 34.211 152 96 2 57 208 276 423 2.47e-21 95.1
Msa0958530 MtrunA17_Chr3g0101131 37.179 156 82 5 68 208 320 474 2.83e-21 95.1
Msa0958530 MtrunA17_Chr1g0194481 46.835 79 41 1 134 212 144 221 9.45e-21 91.7
Msa0958530 MtrunA17_Chr5g0443131 48.148 81 41 1 134 214 143 222 1.45e-20 90.9
Msa0958530 MtrunA17_Chr3g0079691 45.631 103 55 1 106 208 453 554 8.35e-20 90.9
Msa0958530 MtrunA17_Chr3g0079691 43.662 71 38 2 149 219 281 349 9.54e-12 66.2
Msa0958530 MtrunA17_Chr4g0004911 52.632 76 35 1 134 209 322 396 1.00e-19 90.1
Msa0958530 MtrunA17_Chr4g0004911 44.615 65 35 1 149 213 185 248 4.87e-13 70.1
Msa0958530 MtrunA17_Chr2g0294231 44.444 81 44 1 134 214 189 268 2.60e-19 88.2
Msa0958530 MtrunA17_Chr3g0129361 48.611 72 36 1 134 205 130 200 3.31e-19 85.1
Msa0958530 MtrunA17_Chr8g0383351 47.945 73 36 2 134 205 145 216 6.12e-19 84.7
Msa0958530 MtrunA17_Chr5g0418781 48.718 78 36 2 134 208 110 186 6.47e-19 85.5
Msa0958530 MtrunA17_Chr4g0068541 44.872 78 42 1 135 212 195 271 8.22e-19 87.0
Msa0958530 MtrunA17_Chr7g0248721 50.685 73 34 2 133 205 126 196 1.18e-18 83.6
Msa0958530 MtrunA17_Chr7g0243891 53.333 75 34 1 134 208 360 433 1.71e-18 86.7
Msa0958530 MtrunA17_Chr7g0243891 38.750 80 47 2 144 223 212 289 1.27e-11 65.9
Msa0958530 MtrunA17_Chr5g0432161 48.193 83 42 1 126 208 399 480 2.24e-18 86.3
Msa0958530 MtrunA17_Chr5g0432161 43.750 80 43 2 146 225 242 319 7.51e-11 63.5
Msa0958530 MtrunA17_Chr5g0447701 35.714 126 80 1 83 208 187 311 2.36e-18 85.5
Msa0958530 MtrunA17_Chr8g0383251 46.753 77 40 1 135 211 95 170 2.94e-18 81.6
Msa0958530 MtrunA17_Chr3g0106491 52.000 75 35 1 134 208 351 424 4.20e-18 85.5
Msa0958530 MtrunA17_Chr3g0106491 42.105 76 42 2 139 214 189 262 3.38e-12 67.4
Msa0958530 MtrunA17_Chr8g0335811 47.222 72 37 1 134 205 140 210 1.10e-17 81.3
Msa0958530 MtrunA17_Chr7g0224801 50.000 68 33 1 138 205 83 149 1.67e-17 79.3
Msa0958530 MtrunA17_Chr1g0150801 47.297 74 38 1 132 205 86 158 3.65e-17 78.2
Msa0958530 MtrunA17_Chr1g0188941 46.667 75 39 1 134 208 37 110 4.72e-17 76.3
Msa0958530 MtrunA17_Chr8g0386241 46.479 71 37 1 135 205 90 159 4.98e-16 75.5
Msa0958530 MtrunA17_Chr3g0099641 40.517 116 55 5 128 242 232 334 9.08e-16 78.2
Msa0958530 MtrunA17_Chr4g0074001 44.444 81 44 1 134 214 345 424 1.16e-15 78.2
Msa0958530 MtrunA17_Chr7g0216891 30.435 207 113 7 37 226 99 291 2.50e-15 77.0
Msa0958530 MtrunA17_Chr7g0238921 34.921 126 72 3 81 205 64 180 2.81e-15 75.9
Msa0958530 MtrunA17_Chr4g0060271 46.053 76 39 2 135 209 242 316 7.91e-15 75.9
Msa0958530 MtrunA17_Chr2g0293481 36.364 121 72 4 133 252 252 368 9.17e-15 75.1
Msa0958530 MtrunA17_Chr2g0284321 51.613 62 28 2 148 208 35 95 1.20e-14 72.4
Msa0958530 MtrunA17_Chr8g0348311 47.561 82 38 4 141 220 147 225 1.54e-14 73.9
Msa0958530 MtrunA17_Chr8g0379461 49.206 63 30 2 148 209 76 137 1.64e-14 72.4
Msa0958530 MtrunA17_Chr5g0401821 34.821 112 60 3 104 214 166 265 1.80e-14 72.8
Msa0958530 MtrunA17_Chr7g0270831 46.667 75 38 2 135 208 203 276 2.01e-14 73.9
Msa0958530 MtrunA17_Chr1g0147881 49.254 67 32 2 149 214 263 328 2.81e-14 73.2
Msa0958530 MtrunA17_Chr7g0270051 46.250 80 35 3 136 208 35 113 4.26e-14 71.6
Msa0958530 MtrunA17_Chr2g0319961 50.794 63 29 2 148 209 80 141 4.59e-14 71.2
Msa0958530 MtrunA17_Chr2g0322391 46.667 75 38 2 135 208 336 409 4.67e-14 73.2
Msa0958530 MtrunA17_Chr2g0288871 45.333 75 39 2 135 208 292 365 5.48e-14 73.2
Msa0958530 MtrunA17_Chr7g0248691 50.000 78 35 3 144 220 150 224 6.55e-14 71.6
Msa0958530 MtrunA17_Chr4g0071521 47.059 68 34 2 145 211 242 308 7.37e-14 71.6
Msa0958530 MtrunA17_Chr3g0139021 39.806 103 49 3 104 205 281 371 2.25e-13 70.9
Msa0958530 MtrunA17_Chr1g0150281 39.773 88 47 4 124 206 112 198 2.25e-13 69.7
Msa0958530 MtrunA17_Chr4g0051181 45.000 80 42 2 131 209 226 304 2.33e-13 70.9
Msa0958530 MtrunA17_Chr8g0387501 39.583 96 48 4 149 243 130 216 2.76e-13 69.3
Msa0958530 MtrunA17_Chr2g0302391 46.753 77 39 2 149 224 212 287 3.62e-13 70.1
Msa0958530 MtrunA17_Chr2g0333851 40.260 77 42 3 135 208 154 229 4.04e-13 69.3
Msa0958530 MtrunA17_Chr4g0053281 35.714 98 50 3 111 207 240 325 4.42e-13 69.3
Msa0958530 MtrunA17_Chr4g0025061 42.500 80 44 2 135 213 347 425 5.81e-13 70.1
Msa0958530 MtrunA17_Chr8g0387981 43.750 80 36 3 132 203 111 189 1.28e-12 68.2
Msa0958530 MtrunA17_Chr7g0228941 51.724 58 26 2 149 205 53 109 2.30e-12 63.5
Msa0958530 MtrunA17_Chr1g0184691 50.847 59 27 2 149 206 294 351 2.31e-12 67.4
Msa0958530 MtrunA17_Chr1g0202461 47.945 73 34 3 149 220 262 331 7.40e-12 66.2
Msa0958530 MtrunA17_Chr1g0150271 33.684 95 59 3 117 208 68 161 1.26e-11 64.3
Msa0958530 MtrunA17_Chr5g0447711 37.037 81 50 1 128 208 210 289 8.38e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0958530 AT5G41570.1 53.425 73 33 1 133 205 83 154 1.62e-22 93.6
Msa0958530 AT1G13960.1 45.361 97 52 1 112 208 373 468 1.74e-22 99.0
Msa0958530 AT1G13960.1 46.575 73 36 3 142 213 222 292 6.52e-13 70.1
Msa0958530 AT4G18170.1 56.000 75 32 1 134 208 158 231 2.15e-22 96.7
Msa0958530 AT1G29860.1 56.757 74 31 1 135 208 123 195 2.51e-22 95.5
Msa0958530 AT1G13960.2 54.667 75 33 1 134 208 242 315 2.95e-22 96.7
Msa0958530 AT1G13960.2 46.575 73 36 3 142 213 69 139 2.08e-12 68.2
Msa0958530 AT2G03340.1 54.667 75 33 1 134 208 401 474 4.71e-22 97.4
Msa0958530 AT2G03340.1 47.761 67 32 3 143 208 244 308 2.21e-12 68.6
Msa0958530 AT1G64000.1 53.521 71 32 1 135 205 101 170 6.17e-22 92.4
Msa0958530 AT5G46350.1 54.667 75 33 1 134 208 169 242 7.00e-22 95.1
Msa0958530 AT5G56270.1 38.194 144 85 3 65 208 407 546 1.33e-20 93.6
Msa0958530 AT5G56270.1 50.877 57 26 2 149 205 274 328 2.86e-11 65.1
Msa0958530 AT2G47260.1 47.436 78 40 1 135 212 161 237 2.07e-20 91.3
Msa0958530 AT3G01080.2 53.333 75 34 1 134 208 330 403 2.54e-20 92.0
Msa0958530 AT3G01080.2 48.387 62 30 2 147 208 204 263 8.28e-11 63.5
Msa0958530 AT1G69310.4 46.591 88 40 3 134 215 133 219 2.93e-20 90.1
Msa0958530 AT1G69310.2 46.591 88 40 3 134 215 133 219 2.93e-20 90.1
Msa0958530 AT1G69310.1 46.591 88 40 3 134 215 133 219 2.93e-20 90.1
Msa0958530 AT3G01080.1 53.333 75 34 1 134 208 292 365 3.11e-20 91.7
Msa0958530 AT5G49520.1 49.333 75 37 1 135 209 208 281 3.62e-20 91.3
Msa0958530 AT2G46130.1 51.389 72 34 1 134 205 16 86 5.44e-20 84.7
Msa0958530 AT5G07100.1 54.667 75 33 1 134 208 220 293 9.95e-20 89.0
Msa0958530 AT5G07100.1 33.636 110 64 4 125 231 91 194 2.73e-11 64.3
Msa0958530 AT5G07100.2 54.667 75 33 1 134 208 127 200 1.03e-19 87.0
Msa0958530 AT5G07100.4 54.667 75 33 1 134 208 127 200 1.03e-19 87.0
Msa0958530 AT5G07100.5 54.667 75 33 1 134 208 127 200 1.03e-19 87.0
Msa0958530 AT5G07100.3 54.667 75 33 1 134 208 127 200 1.03e-19 87.0
Msa0958530 AT5G64810.1 32.847 137 84 2 69 205 38 166 2.79e-19 85.1
Msa0958530 AT1G55600.1 50.000 74 36 1 135 208 294 366 3.09e-19 89.0
Msa0958530 AT4G26640.7 52.000 75 35 1 134 208 327 400 5.15e-19 88.6
Msa0958530 AT4G26640.2 51.316 76 36 1 134 209 367 441 5.70e-19 88.6
Msa0958530 AT4G26640.1 51.316 76 36 1 134 209 295 369 7.08e-19 88.2
Msa0958530 AT4G26640.5 51.316 76 36 1 134 209 191 265 7.48e-19 87.4
Msa0958530 AT4G26640.6 51.316 76 36 1 134 209 191 265 7.48e-19 87.4
Msa0958530 AT4G26640.4 51.316 76 36 1 134 209 191 265 7.48e-19 87.4
Msa0958530 AT4G26640.3 51.316 76 36 1 134 209 191 265 7.48e-19 87.4
Msa0958530 AT2G38470.1 52.000 75 35 1 134 208 348 421 1.11e-18 87.4
Msa0958530 AT2G04880.2 50.000 74 36 1 135 208 270 342 1.17e-18 87.4
Msa0958530 AT2G04880.2 40.217 92 51 3 142 231 105 194 3.09e-11 64.7
Msa0958530 AT2G04880.1 50.000 74 36 1 135 208 294 366 1.38e-18 87.0
Msa0958530 AT2G04880.1 39.216 102 56 4 142 239 105 204 4.14e-11 64.3
Msa0958530 AT2G37260.3 52.174 69 32 1 137 205 258 325 1.83e-18 85.9
Msa0958530 AT2G37260.3 36.220 127 56 5 149 275 86 187 2.41e-12 67.8
Msa0958530 AT2G37260.2 52.174 69 32 1 137 205 256 323 1.92e-18 85.9
Msa0958530 AT2G37260.2 36.220 127 56 5 149 275 84 185 2.77e-12 67.4
Msa0958530 AT2G21900.1 44.156 77 39 2 137 210 95 170 1.95e-18 83.2
Msa0958530 AT2G30250.1 45.679 81 43 1 134 214 314 393 2.24e-18 85.9
Msa0958530 AT2G37260.1 52.174 69 32 1 137 205 338 405 2.37e-18 86.3
Msa0958530 AT2G37260.1 36.220 127 56 5 149 275 166 267 2.56e-12 68.2
Msa0958530 AT4G39410.1 50.000 72 35 1 134 205 209 279 2.56e-18 84.7
Msa0958530 AT5G26170.1 45.070 71 38 1 135 205 100 169 3.26e-18 81.6
Msa0958530 AT2G44745.1 47.222 72 37 1 134 205 131 201 5.54e-18 82.0
Msa0958530 AT3G62340.1 46.154 78 41 1 133 210 103 179 6.54e-18 83.2
Msa0958530 AT4G30935.1 48.718 78 39 1 149 226 332 408 1.35e-17 84.3
Msa0958530 AT5G13080.1 47.887 71 36 1 135 205 54 123 6.92e-17 77.0
Msa0958530 AT4G26440.1 40.404 99 58 1 110 208 334 431 8.16e-17 82.0
Msa0958530 AT4G23550.1 38.655 119 61 5 131 241 124 238 2.50e-16 79.0
Msa0958530 AT4G01250.1 42.991 107 47 5 148 241 128 233 6.39e-16 77.8
Msa0958530 AT1G69310.3 43.182 88 39 4 134 215 133 215 1.42e-15 76.6
Msa0958530 AT1G29280.1 49.231 65 31 2 148 211 74 137 2.60e-15 75.5
Msa0958530 AT2G46130.2 47.222 72 33 2 134 205 16 82 5.44e-15 70.9
Msa0958530 AT3G01970.1 41.667 72 41 1 135 206 52 122 1.12e-14 70.9
Msa0958530 AT1G30650.1 49.206 63 30 2 148 209 217 278 2.83e-14 73.9
Msa0958530 AT2G34830.1 48.529 68 31 3 148 214 215 279 3.33e-14 73.9
Msa0958530 AT2G34830.2 48.529 68 31 3 148 214 224 288 3.59e-14 73.6
Msa0958530 AT1G68150.1 41.304 92 52 2 131 221 218 308 3.75e-14 73.2
Msa0958530 AT1G62300.1 48.000 75 37 2 135 208 299 372 3.76e-14 73.9
Msa0958530 AT3G58710.1 40.385 104 57 4 148 248 71 172 4.17e-14 72.0
Msa0958530 AT3G58710.2 40.385 104 57 4 148 248 70 171 4.36e-14 72.0
Msa0958530 AT5G15130.2 46.053 76 39 2 135 209 172 246 5.42e-14 73.6
Msa0958530 AT5G15130.1 46.053 76 39 2 135 209 214 288 6.05e-14 73.2
Msa0958530 AT4G04450.2 46.667 75 38 2 135 208 185 258 6.57e-14 72.8
Msa0958530 AT2G25000.2 46.032 63 32 2 147 208 102 163 7.10e-14 70.9
Msa0958530 AT2G25000.4 46.032 63 32 2 147 208 102 163 7.10e-14 70.9
Msa0958530 AT4G01720.1 48.000 75 37 2 135 208 226 299 8.13e-14 72.8
Msa0958530 AT2G25000.3 46.032 63 32 2 147 208 124 185 1.02e-13 70.5
Msa0958530 AT2G25000.1 46.032 63 32 2 147 208 145 206 1.42e-13 70.5
Msa0958530 AT2G30590.1 34.000 150 81 6 73 205 222 370 1.90e-13 71.2
Msa0958530 AT4G22070.4 46.667 75 38 2 135 208 284 357 1.94e-13 71.6
Msa0958530 AT4G22070.3 46.667 75 38 2 135 208 284 357 1.94e-13 71.6
Msa0958530 AT4G22070.2 46.667 75 38 2 135 208 284 357 1.94e-13 71.6
Msa0958530 AT4G22070.1 46.667 75 38 2 135 208 284 357 1.94e-13 71.6
Msa0958530 AT4G04450.1 46.667 75 38 2 135 208 279 352 1.95e-13 71.6
Msa0958530 AT4G31550.2 39.216 102 49 3 105 205 213 302 2.09e-13 70.9
Msa0958530 AT2G23320.1 40.541 111 42 5 106 207 204 299 2.69e-13 70.5
Msa0958530 AT4G31550.1 53.448 58 25 2 149 205 247 303 3.65e-13 70.1
Msa0958530 AT5G52830.1 42.308 104 49 4 144 246 161 254 6.14e-13 69.3
Msa0958530 AT1G18860.1 43.529 85 45 3 125 208 217 299 6.66e-13 70.1
Msa0958530 AT4G24240.1 36.697 109 62 4 109 211 237 344 8.72e-13 68.9
Msa0958530 AT4G31800.2 40.000 80 44 3 147 223 110 188 9.73e-13 67.8
Msa0958530 AT5G43290.1 40.476 84 48 2 148 230 114 196 1.00e-12 68.2
Msa0958530 AT4G31800.1 40.000 80 44 3 147 223 175 253 1.50e-12 68.2
Msa0958530 AT5G28650.1 38.235 102 50 3 105 205 230 319 1.62e-12 68.2
Msa0958530 AT4G11070.2 31.250 144 79 6 120 245 76 217 3.48e-12 66.6
Msa0958530 AT4G11070.1 31.250 144 79 6 120 245 108 249 5.57e-12 66.2
Msa0958530 AT2G24570.1 51.724 58 26 2 149 205 244 300 6.89e-12 66.2
Msa0958530 AT3G04670.1 38.235 102 50 3 105 205 230 319 8.46e-12 65.9
Msa0958530 AT1G80840.1 41.270 63 35 2 147 208 145 206 8.55e-12 65.9
Msa0958530 AT5G45050.4 46.875 64 32 2 148 210 1041 1103 1.33e-11 66.6
Msa0958530 AT5G45050.1 46.875 64 32 2 148 210 1180 1242 1.38e-11 66.6
Msa0958530 AT5G45050.2 46.875 64 32 2 148 210 1152 1214 1.51e-11 66.2
Msa0958530 AT5G24110.1 47.541 61 28 2 147 204 112 171 1.56e-11 65.1

Find 73 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAACTTGTTGTTCATCTA+AGG 0.247246 6_3:+72504415 None:intergenic
CATCAGCTGCAACAACTTCT+TGG 0.283729 6_3:+72504453 None:intergenic
TATGAAACAATTACATATTT+CGG 0.286298 6_3:+72503314 None:intergenic
ATGCCTTATGGATATATTAA+TGG 0.289062 6_3:-72503053 Msa0958530:CDS
TATTTGAAATCCACCAATAC+TGG 0.290258 6_3:+72502974 None:intergenic
TATATATACCTGAGAATAAT+CGG 0.300770 6_3:+72506426 None:intergenic
TTCAAGAAAGGATTATTATT+AGG 0.304221 6_3:+72503098 None:intergenic
TCAATTCTGAACACTACTTT+TGG 0.317569 6_3:+72504141 None:intergenic
CGAAGAAAATCATGAAGTTC+TGG 0.347870 6_3:+72502939 None:intergenic
AATACCATGATGATGCCTTA+TGG 0.355278 6_3:-72503065 Msa0958530:CDS
GGAAACCAAGTACTAAATTC+TGG 0.369352 6_3:-72506517 Msa0958530:CDS
TCTGAAAGTTATGAATCTTA+TGG 0.371782 6_3:-72503137 Msa0958530:CDS
GGTTATCGTTGGCATAAGTA+TGG 0.380213 6_3:-72504093 Msa0958530:CDS
CCTAAATATCATTCATTACT+AGG 0.380869 6_3:+72502834 None:intergenic
TCGTTGGCTTCATGATTAAT+TGG 0.383142 6_3:+72502861 None:intergenic
AGTGTAGTACTTGACTTTGT+TGG 0.385433 6_3:+72503245 None:intergenic
GAGTTGATTGCTCGGCAATA+AGG 0.389254 6_3:-72506495 Msa0958530:CDS
TATGTAATTGTTTCATATGA+AGG 0.393620 6_3:-72503308 Msa0958530:CDS
CAAGTTACAAATACAACTAT+TGG 0.398555 6_3:-72504401 Msa0958530:CDS
AAGCAACATCATTCCTTCAA+TGG 0.416911 6_3:+72504364 None:intergenic
CAACTCCAGAATTTAGTACT+TGG 0.423817 6_3:+72506512 None:intergenic
TGTGAGAAAACAGGTGGAAA+GGG 0.431043 6_3:-72503348 Msa0958530:CDS
GCATCTTCACGATAATTCAT+TGG 0.435145 6_3:+72504482 None:intergenic
TCCTTCTCCCGATTATTCTC+AGG 0.437382 6_3:-72506434 Msa0958530:intron
CAAGCTGTTCCCAGTATTGG+TGG 0.453491 6_3:-72502984 Msa0958530:CDS
ATCAGCTGCAACAACTTCTT+GGG 0.455443 6_3:+72504454 None:intergenic
TCTCAAGCTGTTCCCAGTAT+TGG 0.455665 6_3:-72502987 Msa0958530:CDS
GGTGAGGAGGTGTGAAAGGT+TGG 0.471015 6_3:+72503162 None:intergenic
GGTGTGAAAGGTTGGGTCAT+AGG 0.474536 6_3:+72503170 None:intergenic
TTATTGACCATGTTCAAGAA+AGG 0.487320 6_3:+72503086 None:intergenic
ATTGGTGCAGCACCTTCAAA+AGG 0.488078 6_3:+72502879 None:intergenic
GCTTGAGAGGCAGCAATTGA+AGG 0.494366 6_3:+72503002 None:intergenic
CTTATGGTAAGAACTGTACT+TGG 0.502973 6_3:-72503121 Msa0958530:CDS
GTACTTGATCGATTTAAATG+AGG 0.506847 6_3:-72506461 Msa0958530:CDS
GTTGAAGCAAGTTCCATTGA+AGG 0.510335 6_3:-72504377 Msa0958530:CDS
GTTGTTGTCGTCGTCGTCCA+TGG 0.510749 6_3:+72506552 None:intergenic
CATAATGATACTAGTGCTAG+TGG 0.520978 6_3:-72504338 Msa0958530:CDS
AACCTGTAATGTGAGAAAAC+AGG 0.528589 6_3:-72503357 Msa0958530:CDS
AATGAAGACAAAGTGAATGA+TGG 0.529985 6_3:-72504114 Msa0958530:CDS
GTGAGGAGGTGTGAAAGGTT+GGG 0.531143 6_3:+72503163 None:intergenic
ATGTGAGAAAACAGGTGGAA+AGG 0.535021 6_3:-72503349 Msa0958530:CDS
TAATAATCCTTTCTTGAACA+TGG 0.535267 6_3:-72503093 Msa0958530:CDS
AAATCATGAAGTTCTGGTAG+TGG 0.536148 6_3:+72502945 None:intergenic
ATATATACCTGAGAATAATC+GGG 0.550091 6_3:+72506427 None:intergenic
TGTCCATTAATATATCCATA+AGG 0.552023 6_3:+72503050 None:intergenic
AATACTGGGAACAGCTTGAG+AGG 0.558169 6_3:+72502989 None:intergenic
TCATGAAGTTCTGGTAGTGG+TGG 0.567685 6_3:+72502948 None:intergenic
GAGCGGTGAGGAGGTGTGAA+AGG 0.568345 6_3:+72503158 None:intergenic
TTCATTACTAGGACTGTCGT+TGG 0.572830 6_3:+72502845 None:intergenic
TGGGTCATAGGCAATGCAAA+AGG 0.578767 6_3:+72503182 None:intergenic
AAGGAAATGCTAAATACCCT+AGG 0.580382 6_3:-72504056 Msa0958530:intron
ATTTGAAATCCACCAATACT+GGG 0.584480 6_3:+72502975 None:intergenic
GCAACATTTATCATGGTGCA+AGG 0.584736 6_3:+72504165 None:intergenic
AAATTCTGGAGTTGATTGCT+CGG 0.585351 6_3:-72506503 Msa0958530:CDS
GAAATTCTAAAGGCTAGGAA+AGG 0.587867 6_3:-72504512 Msa0958530:intron
ACCTGAGAATAATCGGGAGA+AGG 0.596196 6_3:+72506433 None:intergenic
TTGATTGCTCGGCAATAAGG+AGG 0.597125 6_3:-72506492 Msa0958530:CDS
TATGGACGCAAGGAGATCAA+AGG 0.600725 6_3:-72504075 Msa0958530:CDS
TGCATTATAGGGGATACTAC+AGG 0.601431 6_3:-72503391 Msa0958530:intron
GCTGCAACAACTTCTTGGGT+AGG 0.614907 6_3:+72504458 None:intergenic
TTGGCATAAGTATGGACGCA+AGG 0.617304 6_3:-72504085 Msa0958530:CDS
CTAGTGGATCTTCTTCACAA+AGG 0.623228 6_3:-72504322 Msa0958530:intron
TAACTTTCAGAGCGGTGAGG+AGG 0.625278 6_3:+72503149 None:intergenic
TATGAAGGCAAACATAATCA+CGG 0.626212 6_3:-72503293 Msa0958530:CDS
AAGTGAATGATGGTTATCGT+TGG 0.626452 6_3:-72504104 Msa0958530:CDS
GTCATAGGCAATGCAAAAGG+TGG 0.645286 6_3:+72503185 None:intergenic
CTGTAATGTGAGAAAACAGG+TGG 0.647364 6_3:-72503354 Msa0958530:CDS
TGATTGCTCGGCAATAAGGA+GGG 0.648861 6_3:-72506491 Msa0958530:CDS
CAACATTTATCATGGTGCAA+GGG 0.652471 6_3:+72504166 None:intergenic
ATATCCATAAGGCATCATCA+TGG 0.655849 6_3:+72503061 None:intergenic
TCATAACTTTCAGAGCGGTG+AGG 0.687777 6_3:+72503146 None:intergenic
AAGATTCATAACTTTCAGAG+CGG 0.728852 6_3:+72503141 None:intergenic
CACTGACAACAGTAGCACGT+AGG 0.750828 6_3:-72503226 Msa0958530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTAAATAATAAATTT+TGG + chr6_3:72505827-72505846 None:intergenic 0.0%
!! TATTATTATATAATACATGT+TGG + chr6_3:72503311-72503330 None:intergenic 10.0%
!!! ATATAAATTTTACTTTTCAA+GGG + chr6_3:72503421-72503440 None:intergenic 10.0%
!!! AATATAAATTTTACTTTTCA+AGG + chr6_3:72503422-72503441 None:intergenic 10.0%
!!! AATTAATTTTTCTTAAATGA+TGG + chr6_3:72503547-72503566 None:intergenic 10.0%
!!! GTTGTTTTATATTTTATAAT+AGG - chr6_3:72503710-72503729 Msa0958530:intron 10.0%
!!! TATTATATTTGCTATATTAT+TGG + chr6_3:72504273-72504292 None:intergenic 10.0%
!! TAATTTGATATTAAATTTGT+GGG - chr6_3:72505761-72505780 Msa0958530:intron 10.0%
!!! AAATTTGGATTAGTTTATAA+TGG + chr6_3:72503124-72503143 None:intergenic 15.0%
!! AATTTCCTATTGAAAAATAA+TGG + chr6_3:72503203-72503222 None:intergenic 15.0%
!! AAATATTTAAACATGACAAA+CGG - chr6_3:72503259-72503278 Msa0958530:CDS 15.0%
!! AGTGCATATTTAATTATTAA+GGG + chr6_3:72503480-72503499 None:intergenic 15.0%
!! TAGTGCATATTTAATTATTA+AGG + chr6_3:72503481-72503500 None:intergenic 15.0%
!!! TAAAAATGTTACATTGTTTT+TGG + chr6_3:72504414-72504433 None:intergenic 15.0%
!!! AAACAATGTAACATTTTTAT+AGG - chr6_3:72504415-72504434 Msa0958530:CDS 15.0%
!! TTTATAGGTAAATTTATTGA+AGG - chr6_3:72504430-72504449 Msa0958530:CDS 15.0%
!! TTATAGGTAAATTTATTGAA+GGG - chr6_3:72504431-72504450 Msa0958530:CDS 15.0%
!! TAGTATAAATTATAGTTTCA+TGG - chr6_3:72504503-72504522 Msa0958530:CDS 15.0%
!! AGTATAAATTATAGTTTCAT+GGG - chr6_3:72504504-72504523 Msa0958530:intron 15.0%
!! TAAAAAAAATCATTTGATGA+TGG + chr6_3:72504559-72504578 None:intergenic 15.0%
!! TATTTGTTTCAAACAAAAAA+TGG - chr6_3:72505122-72505141 Msa0958530:intron 15.0%
!! AAACTTCTAATTATAAAGAA+CGG + chr6_3:72505533-72505552 None:intergenic 15.0%
!! GTAATTTGATATTAAATTTG+TGG - chr6_3:72505760-72505779 Msa0958530:intron 15.0%
!! AATTTGATATTAAATTTGTG+GGG - chr6_3:72505762-72505781 Msa0958530:intron 15.0%
!! ATTAATATTGTATGCATTAT+AGG - chr6_3:72505989-72506008 Msa0958530:intron 15.0%
!! TTAATATTGTATGCATTATA+GGG - chr6_3:72505990-72506009 Msa0958530:intron 15.0%
!! TATGAAACAATTACATATTT+CGG + chr6_3:72506081-72506100 None:intergenic 15.0%
!!! GATTTTTTTTTGTTATGATA+GGG + chr6_3:72506128-72506147 None:intergenic 15.0%
!! TATATATACCTGAGAATAAT+CGG + chr6_3:72502969-72502988 None:intergenic 20.0%
!!! TGTATATTTTAACATAAGAG+GGG + chr6_3:72503898-72503917 None:intergenic 20.0%
!!! GTGTATATTTTAACATAAGA+GGG + chr6_3:72503897-72503916 None:intergenic 20.0%
!!! AGTGTATATTTTAACATAAG+AGG + chr6_3:72503896-72503915 None:intergenic 20.0%
!! ATATTTAATTATTAAGGGAG+GGG + chr6_3:72503475-72503494 None:intergenic 20.0%
!! CATATTTAATTATTAAGGGA+GGG + chr6_3:72503476-72503495 None:intergenic 20.0%
!!! CACATATTTCAATTTTGTTT+TGG - chr6_3:72503688-72503707 Msa0958530:intron 20.0%
!!! AGTGTATATTTTAACATAAG+AGG - chr6_3:72503896-72503915 Msa0958530:intron 20.0%
!!! GTGTATATTTTAACATAAGA+GGG - chr6_3:72503897-72503916 Msa0958530:intron 20.0%
!!! TGTATATTTTAACATAAGAG+GGG - chr6_3:72503898-72503917 Msa0958530:intron 20.0%
!!! TCTAATATGTTTTGAATAAG+AGG - chr6_3:72503969-72503988 Msa0958530:intron 20.0%
!!! CTAATATGTTTTGAATAAGA+GGG - chr6_3:72503970-72503989 Msa0958530:intron 20.0%
!!! TAATATGTTTTGAATAAGAG+GGG - chr6_3:72503971-72503990 Msa0958530:intron 20.0%
!!! AGTGTATATTTTAACATAAG+AGG - chr6_3:72503896-72503915 Msa0958530:intron 20.0%
!!! GTGTATATTTTAACATAAGA+GGG - chr6_3:72503897-72503916 Msa0958530:intron 20.0%
!!! TGTATATTTTAACATAAGAG+GGG - chr6_3:72503898-72503917 Msa0958530:intron 20.0%
!! CTACATATAAAAAGAATACA+TGG + chr6_3:72504486-72504505 None:intergenic 20.0%
!! AACTTCTAATTATAAAGAAC+GGG + chr6_3:72505532-72505551 None:intergenic 20.0%
!!! TATACTTTGAGATGATTTTA+AGG - chr6_3:72505685-72505704 Msa0958530:intron 20.0%
!! ATGATGTAAATATTGTTCAT+TGG - chr6_3:72505910-72505929 Msa0958530:intron 20.0%
!! AATATTGTTCATTGGAATTA+AGG - chr6_3:72505918-72505937 Msa0958530:intron 20.0%
!! ATATTTATGTATATGCTACA+TGG + chr6_3:72505952-72505971 None:intergenic 20.0%
!! TAATATTGTATGCATTATAG+GGG - chr6_3:72505991-72506010 Msa0958530:intron 20.0%
!! TATGTAATTGTTTCATATGA+AGG - chr6_3:72506084-72506103 Msa0958530:intron 20.0%
!!! GGATTTTTTTTTGTTATGAT+AGG + chr6_3:72506129-72506148 None:intergenic 20.0%
!! TTCAAGAAAGGATTATTATT+AGG + chr6_3:72506297-72506316 None:intergenic 20.0%
! ATATATACCTGAGAATAATC+GGG + chr6_3:72502968-72502987 None:intergenic 25.0%
!!! TTGATCATTTTTTGTTGCAT+TGG + chr6_3:72503005-72503024 None:intergenic 25.0%
! GGTAGAAAATGATGTAAATT+TGG + chr6_3:72503139-72503158 None:intergenic 25.0%
!! TTTTAATAATCACATAAGCG+AGG + chr6_3:72503163-72503182 None:intergenic 25.0%
!!! AAATTTTACTTTTCAAGGGA+GGG + chr6_3:72503417-72503436 None:intergenic 25.0%
!!! TAAATTTTACTTTTCAAGGG+AGG + chr6_3:72503418-72503437 None:intergenic 25.0%
! GTAATTCAAGCATCTTATAA+GGG + chr6_3:72503450-72503469 None:intergenic 25.0%
! TGTAATTCAAGCATCTTATA+AGG + chr6_3:72503451-72503470 None:intergenic 25.0%
! TATTTAATTATTAAGGGAGG+GGG + chr6_3:72503474-72503493 None:intergenic 25.0%
! GCATATTTAATTATTAAGGG+AGG + chr6_3:72503477-72503496 None:intergenic 25.0%
! TTACTAAAGACAATAAAGCA+TGG + chr6_3:72503663-72503682 None:intergenic 25.0%
! ACTTCGAAAAAATAGTATTG+CGG + chr6_3:72503818-72503837 None:intergenic 25.0%
! CAAGTTACAAATACAACTAT+TGG - chr6_3:72504991-72505010 Msa0958530:intron 25.0%
! AAAAGGTAAATGATTACCTA+GGG + chr6_3:72505355-72505374 None:intergenic 25.0%
! AAAAAGGTAAATGATTACCT+AGG + chr6_3:72505356-72505375 None:intergenic 25.0%
! ATATATGATTCAAGACATCA+TGG - chr6_3:72505461-72505480 Msa0958530:intron 25.0%
! ACTTCTAATTATAAAGAACG+GGG + chr6_3:72505531-72505550 None:intergenic 25.0%
! ATAAATTTATGTCACTGTCT+TGG + chr6_3:72505578-72505597 None:intergenic 25.0%
! GGTGAAAAATCGATAATTAA+GGG + chr6_3:72505806-72505825 None:intergenic 25.0%
! TGGTGAAAAATCGATAATTA+AGG + chr6_3:72505807-72505826 None:intergenic 25.0%
! TCTGAAAGTTATGAATCTTA+TGG - chr6_3:72506255-72506274 Msa0958530:intron 25.0%
! TAATAATCCTTTCTTGAACA+TGG - chr6_3:72506299-72506318 Msa0958530:intron 25.0%
! ATGCCTTATGGATATATTAA+TGG - chr6_3:72506339-72506358 Msa0958530:intron 25.0%
! TGTCCATTAATATATCCATA+AGG + chr6_3:72506345-72506364 None:intergenic 25.0%
!! ATGATTTTCTTCGACTTAAT+GGG - chr6_3:72506463-72506482 Msa0958530:CDS 25.0%
! GTACTTGATCGATTTAAATG+AGG - chr6_3:72502931-72502950 Msa0958530:CDS 30.0%
!! ACGCACCATTATTTTTCAAT+AGG - chr6_3:72503195-72503214 Msa0958530:CDS 30.0%
!!! TATTTTAACATAAGAGGGGA+GGG + chr6_3:72503902-72503921 None:intergenic 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG + chr6_3:72503901-72503920 None:intergenic 30.0%
!! AATTTTACTTTTCAAGGGAG+GGG + chr6_3:72503416-72503435 None:intergenic 30.0%
CTTCGAAAAAATAGTATTGC+GGG + chr6_3:72503817-72503836 None:intergenic 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG - chr6_3:72503901-72503920 Msa0958530:intron 30.0%
ATGTAATTCAAGCTTCTCTT+AGG - chr6_3:72503927-72503946 Msa0958530:intron 30.0%
TGTAATTCAAGCTTCTCTTA+GGG - chr6_3:72503928-72503947 Msa0958530:intron 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG - chr6_3:72503901-72503920 Msa0958530:intron 30.0%
!!! TATTTTAACATAAGAGGGGA+GGG - chr6_3:72503902-72503921 Msa0958530:intron 30.0%
TGTAATTCAAGCATCTTTGA+GGG - chr6_3:72504031-72504050 Msa0958530:intron 30.0%
CTCTTATCTTTCTTCTTATG+CGG - chr6_3:72504297-72504316 Msa0958530:intron 30.0%
GTTGTTGGTGTAATTGAAAA+AGG + chr6_3:72504379-72504398 None:intergenic 30.0%
GTAATTCGATTGAATCCATT+AGG - chr6_3:72504694-72504713 Msa0958530:intron 30.0%
! GGGAAGGAAATATTTGAAAT+TGG + chr6_3:72504784-72504803 None:intergenic 30.0%
TAATTGCATTACTTTGCACA+TGG + chr6_3:72504849-72504868 None:intergenic 30.0%
!! TGTAACTTGTTGTTCATCTA+AGG + chr6_3:72504980-72504999 None:intergenic 30.0%
TCCTAATTATTATGCAATGC+AGG - chr6_3:72505168-72505187 Msa0958530:intron 30.0%
TCCTGCATTGCATAATAATT+AGG + chr6_3:72505172-72505191 None:intergenic 30.0%
! TCAATTCTGAACACTACTTT+TGG + chr6_3:72505254-72505273 None:intergenic 30.0%
AATGAAGACAAAGTGAATGA+TGG - chr6_3:72505278-72505297 Msa0958530:intron 30.0%
! TAATCATTTACCTTTTTCCC+TGG - chr6_3:72505359-72505378 Msa0958530:intron 30.0%
TCCTCTTTCATATATACACA+AGG + chr6_3:72505441-72505460 None:intergenic 30.0%
CTTCTAATTATAAAGAACGG+GGG + chr6_3:72505530-72505549 None:intergenic 30.0%
! GTCACATTTGAGACAATAAA+CGG + chr6_3:72505614-72505633 None:intergenic 30.0%
!! ACGATAAATCACTTTTAGCA+GGG + chr6_3:72505729-72505748 None:intergenic 30.0%
!! TACGATAAATCACTTTTAGC+AGG + chr6_3:72505730-72505749 None:intergenic 30.0%
TATGAAGGCAAACATAATCA+CGG - chr6_3:72506099-72506118 Msa0958530:intron 30.0%
AAGATTCATAACTTTCAGAG+CGG + chr6_3:72506254-72506273 None:intergenic 30.0%
TTATTGACCATGTTCAAGAA+AGG + chr6_3:72506309-72506328 None:intergenic 30.0%
! ATTTGAAATCCACCAATACT+GGG + chr6_3:72506420-72506439 None:intergenic 30.0%
! TATTTGAAATCCACCAATAC+TGG + chr6_3:72506421-72506440 None:intergenic 30.0%
! CATGATTTTCTTCGACTTAA+TGG - chr6_3:72506462-72506481 Msa0958530:CDS 30.0%
GACAACAACAACAACAACAA+GGG - chr6_3:72502854-72502873 Msa0958530:CDS 35.0%
GGAAACCAAGTACTAAATTC+TGG - chr6_3:72502875-72502894 Msa0958530:CDS 35.0%
CAACTCCAGAATTTAGTACT+TGG + chr6_3:72502883-72502902 None:intergenic 35.0%
!! AAATTCTGGAGTTGATTGCT+CGG - chr6_3:72502889-72502908 Msa0958530:CDS 35.0%
TAATAATCACATAAGCGAGG+TGG + chr6_3:72503160-72503179 None:intergenic 35.0%
! TGACAAACGGATTCCTAATT+AGG - chr6_3:72503272-72503291 Msa0958530:CDS 35.0%
ATTGAATCGAAGGCCTAATT+AGG + chr6_3:72503288-72503307 None:intergenic 35.0%
TACATGTTGGATTGAATCGA+AGG + chr6_3:72503298-72503317 None:intergenic 35.0%
!! ATTTTAACATAAGAGGGGAG+GGG + chr6_3:72503903-72503922 None:intergenic 35.0%
TTCAAGCATCTTATAAGGGA+GGG + chr6_3:72503446-72503465 None:intergenic 35.0%
ATTCAAGCATCTTATAAGGG+AGG + chr6_3:72503447-72503466 None:intergenic 35.0%
GTAATTCAAGCTTCTCTTAG+GGG - chr6_3:72503929-72503948 Msa0958530:intron 35.0%
!! ATTTTAACATAAGAGGGGAG+GGG - chr6_3:72503903-72503922 Msa0958530:intron 35.0%
CTGTAATTCAAGCATCTTTG+AGG - chr6_3:72504030-72504049 Msa0958530:intron 35.0%
GTAATTCAAGCATCTTTGAG+GGG - chr6_3:72504032-72504051 Msa0958530:intron 35.0%
TGGTCATATTGTTGTGTTGT+TGG + chr6_3:72504394-72504413 None:intergenic 35.0%
TTGGATGTTGAACTTCATCT+TGG + chr6_3:72504765-72504784 None:intergenic 35.0%
GCTAAACGCTGAAATTCTAA+AGG - chr6_3:72504870-72504889 Msa0958530:intron 35.0%
! GAAATTCTAAAGGCTAGGAA+AGG - chr6_3:72504880-72504899 Msa0958530:intron 35.0%
GCATCTTCACGATAATTCAT+TGG + chr6_3:72504913-72504932 None:intergenic 35.0%
AAGCAACATCATTCCTTCAA+TGG + chr6_3:72505031-72505050 None:intergenic 35.0%
CATAATGATACTAGTGCTAG+TGG - chr6_3:72505054-72505073 Msa0958530:intron 35.0%
TTATTATGCAATGCAGGAAG+AGG - chr6_3:72505174-72505193 Msa0958530:intron 35.0%
CAACATTTATCATGGTGCAA+GGG + chr6_3:72505229-72505248 None:intergenic 35.0%
! TTTTGGCGCAACATTTATCA+TGG + chr6_3:72505237-72505256 None:intergenic 35.0%
AAGTGAATGATGGTTATCGT+TGG - chr6_3:72505288-72505307 Msa0958530:intron 35.0%
AAGGAAATGCTAAATACCCT+AGG - chr6_3:72505336-72505355 Msa0958530:intron 35.0%
GCCTTGTGTATATATGAAAG+AGG - chr6_3:72505437-72505456 Msa0958530:intron 35.0%
!! CGATAAATCACTTTTAGCAG+GGG + chr6_3:72505728-72505747 None:intergenic 35.0%
AACCTGTAATGTGAGAAAAC+AGG - chr6_3:72506035-72506054 Msa0958530:intron 35.0%
AGTGTAGTACTTGACTTTGT+TGG + chr6_3:72506150-72506169 None:intergenic 35.0%
CTTATGGTAAGAACTGTACT+TGG - chr6_3:72506271-72506290 Msa0958530:intron 35.0%
! AATACCATGATGATGCCTTA+TGG - chr6_3:72506327-72506346 Msa0958530:intron 35.0%
! ATATCCATAAGGCATCATCA+TGG + chr6_3:72506334-72506353 None:intergenic 35.0%
! AAATCATGAAGTTCTGGTAG+TGG + chr6_3:72506450-72506469 None:intergenic 35.0%
CGAAGAAAATCATGAAGTTC+TGG + chr6_3:72506456-72506475 None:intergenic 35.0%
! GCTAGAATGTTTCCTTTTGA+AGG - chr6_3:72506501-72506520 Msa0958530:CDS 35.0%
!! TCGTTGGCTTCATGATTAAT+TGG + chr6_3:72506534-72506553 None:intergenic 35.0%
CGACAACAACAACAACAACA+AGG - chr6_3:72502853-72502872 Msa0958530:CDS 40.0%
! TTTTTGTTGCATTGGAGCAG+AGG + chr6_3:72502997-72503016 None:intergenic 40.0%
GTAACTCAAGCTTCCTTGAA+GGG + chr6_3:72503360-72503379 None:intergenic 40.0%
TGTAACTCAAGCTTCCTTGA+AGG + chr6_3:72503361-72503380 None:intergenic 40.0%
TCAAGCATCTTATAAGGGAG+GGG + chr6_3:72503445-72503464 None:intergenic 40.0%
!! TGTTTTGAATAAGAGGGGAG+TGG - chr6_3:72503976-72503995 Msa0958530:intron 40.0%
ATCCATTAGGCTGTTGTTGA+TGG - chr6_3:72504707-72504726 Msa0958530:intron 40.0%
AACCATCAACAACAGCCTAA+TGG + chr6_3:72504712-72504731 None:intergenic 40.0%
!! TGTTGTTGATGGTTTCCACA+TGG - chr6_3:72504718-72504737 Msa0958530:intron 40.0%
! TTGATCAAGTGTTGTTGGGA+AGG + chr6_3:72504800-72504819 None:intergenic 40.0%
TTCCCAACAACACTTGATCA+AGG - chr6_3:72504799-72504818 Msa0958530:intron 40.0%
! GTCCTTGATCAAGTGTTGTT+GGG + chr6_3:72504804-72504823 None:intergenic 40.0%
! TGTCCTTGATCAAGTGTTGT+TGG + chr6_3:72504805-72504824 None:intergenic 40.0%
ACAACACTTGATCAAGGACA+TGG - chr6_3:72504805-72504824 Msa0958530:intron 40.0%
! ACGCTGAAATTCTAAAGGCT+AGG - chr6_3:72504875-72504894 Msa0958530:intron 40.0%
ATCAGCTGCAACAACTTCTT+GGG + chr6_3:72504941-72504960 None:intergenic 40.0%
TGCAGCTGATGAAGCAAAAA+CGG - chr6_3:72504951-72504970 Msa0958530:intron 40.0%
GTTGAAGCAAGTTCCATTGA+AGG - chr6_3:72505015-72505034 Msa0958530:intron 40.0%
! CTAGTGGATCTTCTTCACAA+AGG - chr6_3:72505070-72505089 Msa0958530:intron 40.0%
GCAACATTTATCATGGTGCA+AGG + chr6_3:72505230-72505249 None:intergenic 40.0%
GGTTATCGTTGGCATAAGTA+TGG - chr6_3:72505299-72505318 Msa0958530:intron 40.0%
! ACATACTTGCATTGACACCA+GGG + chr6_3:72505379-72505398 None:intergenic 40.0%
TGCATTATAGGGGATACTAC+AGG - chr6_3:72506001-72506020 Msa0958530:intron 40.0%
! CACCTGTTTTCTCACATTAC+AGG + chr6_3:72506040-72506059 None:intergenic 40.0%
CTGTAATGTGAGAAAACAGG+TGG - chr6_3:72506038-72506057 Msa0958530:intron 40.0%
ATGTGAGAAAACAGGTGGAA+AGG - chr6_3:72506043-72506062 Msa0958530:intron 40.0%
TGTGAGAAAACAGGTGGAAA+GGG - chr6_3:72506044-72506063 Msa0958530:intron 40.0%
TTCATTACTAGGACTGTCGT+TGG + chr6_3:72506550-72506569 None:intergenic 40.0%
! GAGTTGATTGCTCGGCAATA+AGG - chr6_3:72502897-72502916 Msa0958530:CDS 45.0%
TTGATTGCTCGGCAATAAGG+AGG - chr6_3:72502900-72502919 Msa0958530:CDS 45.0%
TGATTGCTCGGCAATAAGGA+GGG - chr6_3:72502901-72502920 Msa0958530:CDS 45.0%
TCCTTCTCCCGATTATTCTC+AGG - chr6_3:72502958-72502977 Msa0958530:CDS 45.0%
ACCTGAGAATAATCGGGAGA+AGG + chr6_3:72502962-72502981 None:intergenic 45.0%
ATTCAAGCTTCTCTTAGGGG+AGG - chr6_3:72503932-72503951 Msa0958530:intron 45.0%
TTCAAGCTTCTCTTAGGGGA+GGG - chr6_3:72503933-72503952 Msa0958530:intron 45.0%
! ATTCAAGCATCTTTGAGGGG+AGG - chr6_3:72504035-72504054 Msa0958530:intron 45.0%
TGATGGTTTCCACATGGCAA+CGG - chr6_3:72504724-72504743 Msa0958530:intron 45.0%
CATCAGCTGCAACAACTTCT+TGG + chr6_3:72504942-72504961 None:intergenic 45.0%
TTGGCATAAGTATGGACGCA+AGG - chr6_3:72505307-72505326 Msa0958530:intron 45.0%
TATGGACGCAAGGAGATCAA+AGG - chr6_3:72505317-72505336 Msa0958530:intron 45.0%
! TGCATTGACACCAGGGAAAA+AGG + chr6_3:72505372-72505391 None:intergenic 45.0%
! CACATACTTGCATTGACACC+AGG + chr6_3:72505380-72505399 None:intergenic 45.0%
GTCATAGGCAATGCAAAAGG+TGG + chr6_3:72506210-72506229 None:intergenic 45.0%
TGGGTCATAGGCAATGCAAA+AGG + chr6_3:72506213-72506232 None:intergenic 45.0%
TCATAACTTTCAGAGCGGTG+AGG + chr6_3:72506249-72506268 None:intergenic 45.0%
AATACTGGGAACAGCTTGAG+AGG + chr6_3:72506406-72506425 None:intergenic 45.0%
TCTCAAGCTGTTCCCAGTAT+TGG - chr6_3:72506405-72506424 Msa0958530:intron 45.0%
!! TCATGAAGTTCTGGTAGTGG+TGG + chr6_3:72506447-72506466 None:intergenic 45.0%
ATTGGTGCAGCACCTTCAAA+AGG + chr6_3:72506516-72506535 None:intergenic 45.0%
ATTAGACTCCCCTCCCTTCA+AGG - chr6_3:72503344-72503363 Msa0958530:CDS 50.0%
TCAAGCTTCCTTGAAGGGAG+GGG + chr6_3:72503355-72503374 None:intergenic 50.0%
CTCAAGCTTCCTTGAAGGGA+GGG + chr6_3:72503356-72503375 None:intergenic 50.0%
ACTCAAGCTTCCTTGAAGGG+AGG + chr6_3:72503357-72503376 None:intergenic 50.0%
TCAAGCTTCTCTTAGGGGAG+GGG - chr6_3:72503934-72503953 Msa0958530:intron 50.0%
GATGGTTTCCACATGGCAAC+GGG - chr6_3:72504725-72504744 Msa0958530:intron 50.0%
GCTGCAACAACTTCTTGGGT+AGG + chr6_3:72504937-72504956 None:intergenic 50.0%
CACTGACAACAGTAGCACGT+AGG - chr6_3:72506166-72506185 Msa0958530:intron 50.0%
GGTGTGAAAGGTTGGGTCAT+AGG + chr6_3:72506225-72506244 None:intergenic 50.0%
! GTGAGGAGGTGTGAAAGGTT+GGG + chr6_3:72506232-72506251 None:intergenic 50.0%
TAACTTTCAGAGCGGTGAGG+AGG + chr6_3:72506246-72506265 None:intergenic 50.0%
GCTTGAGAGGCAGCAATTGA+AGG + chr6_3:72506393-72506412 None:intergenic 50.0%
! CAAGCTGTTCCCAGTATTGG+TGG - chr6_3:72506408-72506427 Msa0958530:intron 50.0%
TTTCCACATGGCAACGGGAG+AGG - chr6_3:72504730-72504749 Msa0958530:intron 55.0%
! GGTGAGGAGGTGTGAAAGGT+TGG + chr6_3:72506233-72506252 None:intergenic 55.0%
ACACCTCTCCCGTTGCCATG+TGG + chr6_3:72504736-72504755 None:intergenic 60.0%
!! ACGGGGGCGTCAGTAGTTGT+TGG + chr6_3:72505514-72505533 None:intergenic 60.0%
! GAGCGGTGAGGAGGTGTGAA+AGG + chr6_3:72506237-72506256 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 72502842 72506572 72502842 ID=Msa0958530;Name=Msa0958530
chr6_3 mRNA 72502842 72506572 72502842 ID=Msa0958530-mRNA-1;Parent=Msa0958530;Name=Msa0958530-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|4|0|355
chr6_3 exon 72506435 72506572 72506435 ID=Msa0958530-mRNA-1:exon:13229;Parent=Msa0958530-mRNA-1
chr6_3 exon 72504323 72504522 72504323 ID=Msa0958530-mRNA-1:exon:13228;Parent=Msa0958530-mRNA-1
chr6_3 exon 72504057 72504224 72504057 ID=Msa0958530-mRNA-1:exon:13227;Parent=Msa0958530-mRNA-1
chr6_3 exon 72502842 72503403 72502842 ID=Msa0958530-mRNA-1:exon:13226;Parent=Msa0958530-mRNA-1
chr6_3 CDS 72506435 72506572 72506435 ID=Msa0958530-mRNA-1:cds;Parent=Msa0958530-mRNA-1
chr6_3 CDS 72504323 72504522 72504323 ID=Msa0958530-mRNA-1:cds;Parent=Msa0958530-mRNA-1
chr6_3 CDS 72504057 72504224 72504057 ID=Msa0958530-mRNA-1:cds;Parent=Msa0958530-mRNA-1
chr6_3 CDS 72502842 72503403 72502842 ID=Msa0958530-mRNA-1:cds;Parent=Msa0958530-mRNA-1
Gene Sequence

>Msa0958530

ATGGACGACGACGACAACAACAACAACAACAAGGGAAACCAAGTACTAAATTCTGGAGTTGATTGCTCGGCAATAAGGAGGGAGAAAAAGTACTTGATCGATTTAAATGAGGTTTGTCCTTCTCCCGATTATTCTCAGGCTAGGAAAGGAAAGATGCCAATGAATTATCGTGAAGATGCACCTACCCAAGAAGTTGTTGCAGCTGATGAAGCAAAAACGGTATCCTTAGATGAACAACAAGTTACAAATACAACTATTGGTGTTGAAGCAAGTTCCATTGAAGGAATGATGTTGCTTCAACATAATGATACTAGTGCTAGTGGATCTTCTTCACAAAGGAAGAGGAAAATTGACTTCTCTGAACACTATAAACTCCCTTGCACCATGATAAATGTTGCGCCAAAAGTAGTGTTCAGAATTGAAATCAATGAAGACAAAGTGAATGATGGTTATCGTTGGCATAAGTATGGACGCAAGGAGATCAAAGGAAATGCTAAATACCCTAGGGGATACTACAGGTGTACAACAAAAACCTGTAATGTGAGAAAACAGGTGGAAAGGGATGCACAGAATCCGAAATATGTAATTGTTTCATATGAAGGCAAACATAATCACGGATTCCCTATCATAACAAAAAAAAATCCAACAAAGTCAAGTACTACACTGACAACAGTAGCACGTAGGAATGCTAGCATTGTATCGCCACCTTTTGCATTGCCTATGACCCAACCTTTCACACCTCCTCACCGCTCTGAAAGTTATGAATCTTATGGTAAGAACTGTACTTGGCCTAATAATAATCCTTTCTTGAACATGGTCAATAATACCATGATGATGCCTTATGGATATATTAATGGACAACATTTTCGAGATTGTTATGCTGCTCCTTCAATTGCTGCCTCTCAAGCTGTTCCCAGTATTGGTGGATTTCAAATATCTCCACCACTACCAGAACTTCATGATTTTCTTCGACTTAATGGGTACAATATTGCTGCTGCTAGAATGTTTCCTTTTGAAGGTGCTGCACCAATTAATCATGAAGCCAACGACAGTCCTAGTAATGAATGA
Protein sequence

>Msa0958530

MDDDDNNNNNKGNQVLNSGVDCSAIRREKKYLIDLNEVCPSPDYSQARKGKMPMNYREDAPTQEVVAADEAKTVSLDEQQVTNTTIGVEASSIEGMMLLQHNDTSASGSSSQRKRKIDFSEHYKLPCTMINVAPKVVFRIEINEDKVNDGYRWHKYGRKEIKGNAKYPRGYYRCTTKTCNVRKQVERDAQNPKYVIVSYEGKHNHGFPIITKKNPTKSSTTLTTVARRNASIVSPPFALPMTQPFTPPHRSESYESYGKNCTWPNNNPFLNMVNNTMMMPYGYINGQHFRDCYAAPSIAASQAVPSIGGFQISPPLPELHDFLRLNGYNIAAARMFPFEGAAPINHEANDSPSNE*