Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958730 | KEH26454.1 | 66.798 | 253 | 26 | 4 | 303 | 497 | 410 | 662 | 5.00e-93 | 307 |
| Msa0958730 | KEH26454.1 | 86.875 | 320 | 30 | 2 | 1 | 308 | 1 | 320 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958730 | sp|Q9SLH0|EIL1_ARATH | 55.472 | 265 | 111 | 1 | 29 | 286 | 43 | 307 | 3.61e-105 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0958730 | TF | EIL |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958730 | MtrunA17_Chr6g0476301 | 89.130 | 230 | 21 | 1 | 83 | 308 | 1 | 230 | 1.39e-152 | 440 |
| Msa0958730 | MtrunA17_Chr6g0476301 | 72.727 | 55 | 15 | 0 | 299 | 353 | 311 | 365 | 5.58e-17 | 82.8 |
| Msa0958730 | MtrunA17_Chr6g0476291 | 88.261 | 230 | 23 | 1 | 83 | 308 | 1 | 230 | 7.05e-152 | 434 |
| Msa0958730 | MtrunA17_Chr6g0473191 | 88.696 | 230 | 22 | 1 | 83 | 308 | 1 | 230 | 1.77e-151 | 434 |
| Msa0958730 | MtrunA17_Chr5g0440591 | 48.773 | 326 | 140 | 5 | 29 | 331 | 43 | 364 | 1.49e-107 | 333 |
| Msa0958730 | MtrunA17_Chr3g0118361 | 53.191 | 282 | 120 | 4 | 34 | 306 | 51 | 329 | 2.62e-106 | 330 |
| Msa0958730 | MtrunA17_Chr3g0080401 | 57.627 | 236 | 97 | 2 | 83 | 318 | 1 | 233 | 1.50e-96 | 295 |
| Msa0958730 | MtrunA17_Chr2g0329151 | 53.053 | 262 | 112 | 3 | 29 | 282 | 32 | 290 | 4.58e-94 | 298 |
| Msa0958730 | MtrunA17_Chr3g0124291 | 49.225 | 258 | 109 | 6 | 35 | 279 | 32 | 280 | 4.28e-84 | 266 |
| Msa0958730 | MtrunA17_Chr8g0382561 | 47.510 | 261 | 130 | 4 | 25 | 279 | 12 | 271 | 2.03e-77 | 249 |
| Msa0958730 | MtrunA17_Chr7g0260281 | 43.077 | 65 | 37 | 0 | 72 | 136 | 1 | 65 | 1.39e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0958730 | AT2G27050.1 | 55.472 | 265 | 111 | 1 | 29 | 286 | 43 | 307 | 3.67e-106 | 328 |
| Msa0958730 | AT3G20770.1 | 55.682 | 264 | 110 | 2 | 29 | 286 | 43 | 305 | 1.21e-104 | 326 |
| Msa0958730 | AT1G73730.1 | 49.817 | 273 | 124 | 3 | 18 | 282 | 21 | 288 | 1.90e-90 | 287 |
| Msa0958730 | AT1G73730.2 | 49.817 | 273 | 124 | 3 | 18 | 282 | 9 | 276 | 2.04e-90 | 287 |
| Msa0958730 | AT5G10120.1 | 49.615 | 260 | 123 | 3 | 28 | 279 | 16 | 275 | 1.34e-88 | 280 |
| Msa0958730 | AT5G65100.1 | 46.182 | 275 | 118 | 6 | 30 | 278 | 33 | 303 | 6.06e-79 | 257 |
| Msa0958730 | AT5G21120.2 | 45.882 | 255 | 127 | 4 | 40 | 283 | 60 | 314 | 1.26e-72 | 239 |
| Msa0958730 | AT5G21120.3 | 45.882 | 255 | 127 | 4 | 40 | 283 | 53 | 307 | 1.26e-72 | 239 |
| Msa0958730 | AT5G21120.1 | 45.882 | 255 | 127 | 4 | 40 | 283 | 53 | 307 | 1.26e-72 | 239 |
Find 97 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGATGCTGCATATTT+TGG | 0.183879 | 6_3:-73854603 | None:intergenic |
| CTTGATTGCCATGAAAATTT+TGG | 0.189175 | 6_3:-73854627 | None:intergenic |
| TGGCATCATCAAGTTATAAT+TGG | 0.197242 | 6_3:+73854776 | Msa0958730:CDS |
| GCTAAATATGAAGCGGAAAA+TGG | 0.224421 | 6_3:+73852651 | Msa0958730:CDS |
| ACAAGATAAACTCAGTATTA+AGG | 0.259065 | 6_3:+73853025 | Msa0958730:CDS |
| CGGAGATTTCCGTTGGAAAA+AGG | 0.260283 | 6_3:+73852801 | Msa0958730:CDS |
| AATGCTGCTAAGAAAGTTAA+AGG | 0.267746 | 6_3:+73851798 | Msa0958730:CDS |
| GTATTAAGGAAACATCTATT+TGG | 0.288262 | 6_3:+73853039 | Msa0958730:CDS |
| AACAATGCAAAACAAGAAAA+AGG | 0.304941 | 6_3:+73851721 | Msa0958730:CDS |
| AGATTATGAGGCTTTCTATA+AGG | 0.304992 | 6_3:-73852903 | None:intergenic |
| TTCAGCGAGTGAAGTGTAAT+TGG | 0.310216 | 6_3:-73852711 | None:intergenic |
| CTTTGATTAACACCCTGATT+TGG | 0.319131 | 6_3:-73854457 | None:intergenic |
| GAACTACCCGACACCATATT+AGG | 0.324492 | 6_3:+73852735 | Msa0958730:CDS |
| GAGTACTATGATTCCAAATC+AGG | 0.335331 | 6_3:+73854444 | Msa0958730:CDS |
| CAACTTCAACTATATCGAAT+TGG | 0.354077 | 6_3:-73853439 | None:intergenic |
| GATGCTCGTGGCTTCATCTA+TGG | 0.357885 | 6_3:+73852525 | Msa0958730:CDS |
| TTCCTAATCTTATGAACATT+AGG | 0.362413 | 6_3:-73852978 | None:intergenic |
| GATTATGAGGCTTTCTATAA+GGG | 0.363151 | 6_3:-73852902 | None:intergenic |
| CAAACCTTCTTCAGATTATG+AGG | 0.369249 | 6_3:-73852915 | None:intergenic |
| GTGCACAAGAACACATATTA+AGG | 0.370390 | 6_3:+73851884 | Msa0958730:CDS |
| CTCCATGATTCTTTCCCTGT+TGG | 0.376931 | 6_3:-73852843 | None:intergenic |
| CCTCCACCATGGTGGCCAAC+AGG | 0.377036 | 6_3:+73852828 | Msa0958730:CDS |
| GGTTTGGAAGGTTTACGTTT+TGG | 0.382365 | 6_3:+73852932 | Msa0958730:CDS |
| CTCATAATCTGAAGAAGGTT+TGG | 0.391254 | 6_3:+73852916 | Msa0958730:CDS |
| AGTTATGATTCTCGTGTTGA+AGG | 0.407240 | 6_3:+73853122 | Msa0958730:CDS |
| CCAAAATATGCAGCATCAAA+TGG | 0.411899 | 6_3:+73854603 | Msa0958730:CDS |
| AAGAGACAATATTATATCAT+TGG | 0.420119 | 6_3:+73851834 | Msa0958730:CDS |
| CACTTGCATGGTAGATTTGA+TGG | 0.428886 | 6_3:-73854399 | None:intergenic |
| TGAGAGAAGTGAACCTAATA+TGG | 0.432462 | 6_3:-73852748 | None:intergenic |
| AACATCCGATTGAGAATTGA+AGG | 0.434143 | 6_3:-73854734 | None:intergenic |
| CACTCATTGGTTTGCCCTCG+TGG | 0.436143 | 6_3:-73852557 | None:intergenic |
| CTACCATGCAAGTGTTCAAC+AGG | 0.437195 | 6_3:+73854408 | Msa0958730:CDS |
| GTTGCAACCATGTTCATAAC+TGG | 0.438691 | 6_3:-73854568 | None:intergenic |
| GTTGAGGCATTTGCTTGCAT+TGG | 0.441840 | 6_3:-73854706 | None:intergenic |
| TTGAAGCTTCCCCTCTTGAA+TGG | 0.445723 | 6_3:-73851699 | None:intergenic |
| ACATTAGCTACTTCAGCATT+AGG | 0.464999 | 6_3:-73854682 | None:intergenic |
| TACCGCAGCTTGCACACGTT+GGG | 0.467304 | 6_3:-73853498 | None:intergenic |
| GATAAGATCATTCATCATAC+AGG | 0.467684 | 6_3:+73853530 | Msa0958730:CDS |
| AACAACCTTCAATTCTCAAT+CGG | 0.467982 | 6_3:+73854729 | Msa0958730:CDS |
| TTGTCTGATGAACCACTCAT+TGG | 0.468990 | 6_3:-73852570 | None:intergenic |
| CCTGTTGGCCACCATGGTGG+AGG | 0.469951 | 6_3:-73852828 | None:intergenic |
| TGAATGATCTTATCTGCAAC+AGG | 0.473671 | 6_3:-73853521 | None:intergenic |
| CTCCTAATGTTCATAAGATT+AGG | 0.475251 | 6_3:+73852976 | Msa0958730:CDS |
| CAGGTACATGTTAATGATGA+TGG | 0.486249 | 6_3:+73852494 | Msa0958730:intron |
| AACGGAAATCTCCGTTGTGG+TGG | 0.487895 | 6_3:-73852792 | None:intergenic |
| ACAAATTATGAAAAGTTGAA+TGG | 0.493728 | 6_3:+73852684 | Msa0958730:CDS |
| CATCAGACAATTTACGAGGC+TGG | 0.493913 | 6_3:+73852583 | Msa0958730:CDS |
| GATAGCACCATTATGAACTC+TGG | 0.501076 | 6_3:-73851671 | None:intergenic |
| ACCATGTTCATAACTGGCAT+TGG | 0.505692 | 6_3:-73854562 | None:intergenic |
| TGATGCTTACAACAACTTTG+TGG | 0.507166 | 6_3:+73854756 | Msa0958730:CDS |
| TCATATTTAGCAATTGTCGC+TGG | 0.510330 | 6_3:-73852639 | None:intergenic |
| GGCCAACAGGGAAAGAATCA+TGG | 0.513222 | 6_3:+73852841 | Msa0958730:CDS |
| AGTGAACCTAATATGGTGTC+GGG | 0.518068 | 6_3:-73852741 | None:intergenic |
| TCTTTCCCTGTTGGCCACCA+TGG | 0.518755 | 6_3:-73852834 | None:intergenic |
| ACTCATTGGTTTGCCCTCGT+GGG | 0.520053 | 6_3:-73852556 | None:intergenic |
| ATGTATCCCAGAGTTCATAA+TGG | 0.523895 | 6_3:+73851664 | Msa0958730:CDS |
| GCTTGCACACGTTGGGCAAG+AGG | 0.525430 | 6_3:-73853491 | None:intergenic |
| TTATGATTAACACCTGGAGT+TGG | 0.531466 | 6_3:-73854370 | None:intergenic |
| TAATCTGAAGAAGGTTTGGA+AGG | 0.542382 | 6_3:+73852920 | Msa0958730:CDS |
| TCTCCTGTTGAACACTTGCA+TGG | 0.543277 | 6_3:-73854411 | None:intergenic |
| ATGAGATTTAGTGAAGATCC+TGG | 0.545819 | 6_3:+73852873 | Msa0958730:CDS |
| ACCACAACGGAGATTTCCGT+TGG | 0.549776 | 6_3:+73852794 | Msa0958730:CDS |
| TTCCCTGTTGGCCACCATGG+TGG | 0.549900 | 6_3:-73852831 | None:intergenic |
| AAGTGAACCTAATATGGTGT+CGG | 0.558954 | 6_3:-73852742 | None:intergenic |
| AAAGCCTCATAATCTGAAGA+AGG | 0.560995 | 6_3:+73852911 | Msa0958730:CDS |
| GGAACATAGTCAGACAATCA+AGG | 0.561355 | 6_3:+73852997 | Msa0958730:CDS |
| CTCATTGGTTTGCCCTCGTG+GGG | 0.563133 | 6_3:-73852555 | None:intergenic |
| CTCCACCATGGTGGCCAACA+GGG | 0.563459 | 6_3:+73852829 | Msa0958730:CDS |
| CATCATTGAAGTATTCATCA+TGG | 0.563846 | 6_3:-73854533 | None:intergenic |
| TGCCCAACGTGTGCAAGCTG+CGG | 0.574797 | 6_3:+73853496 | Msa0958730:CDS |
| GACAATTGCTAAATATGAAG+CGG | 0.577001 | 6_3:+73852644 | Msa0958730:CDS |
| AGAATTGAAGGTTGTTGTTG+AGG | 0.577679 | 6_3:-73854722 | None:intergenic |
| ATAGCACCATTATGAACTCT+GGG | 0.587051 | 6_3:-73851670 | None:intergenic |
| ATTATGAGGCTTTCTATAAG+GGG | 0.590034 | 6_3:-73852901 | None:intergenic |
| ATATTATATCATTGGAACAA+AGG | 0.591577 | 6_3:+73851842 | Msa0958730:CDS |
| AGTACTATGATTCCAAATCA+GGG | 0.594860 | 6_3:+73854445 | Msa0958730:CDS |
| AGTACGATGATTCCAACTCC+AGG | 0.601419 | 6_3:+73854358 | Msa0958730:CDS |
| ACGGAAATCTCCGTTGTGGT+GGG | 0.614439 | 6_3:-73852791 | None:intergenic |
| CAGACAATTTACGAGGCTGG+TGG | 0.628174 | 6_3:+73852586 | Msa0958730:CDS |
| TCCAACGGAAATCTCCGTTG+TGG | 0.632183 | 6_3:-73852795 | None:intergenic |
| CGTTGTGGTGGGTCACAATG+CGG | 0.634330 | 6_3:-73852780 | None:intergenic |
| CGCATTGTGACCCACCACAA+CGG | 0.638363 | 6_3:+73852781 | Msa0958730:CDS |
| GTACCGCAGCTTGCACACGT+TGG | 0.638406 | 6_3:-73853499 | None:intergenic |
| GCTATCGCTAACCATTCAAG+AGG | 0.639976 | 6_3:+73851688 | Msa0958730:CDS |
| TTATGAGGCTTTCTATAAGG+GGG | 0.640626 | 6_3:-73852900 | None:intergenic |
| TCCAATGCCAGTTATGAACA+TGG | 0.642108 | 6_3:+73854561 | Msa0958730:CDS |
| TGGAATCATCGTACTCATGA+CGG | 0.645856 | 6_3:-73854350 | None:intergenic |
| CTATCGCTAACCATTCAAGA+GGG | 0.648395 | 6_3:+73851689 | Msa0958730:CDS |
| ATGGAAGTTTGTGATGCTCG+TGG | 0.649462 | 6_3:+73852513 | Msa0958730:CDS |
| CACGAGGGCAAACCAATGAG+TGG | 0.675933 | 6_3:+73852558 | Msa0958730:CDS |
| CTATGGAGTAATACCCCACG+AGG | 0.701029 | 6_3:+73852542 | Msa0958730:CDS |
| TGCATGTTATGATTAACACC+TGG | 0.705952 | 6_3:-73854376 | None:intergenic |
| AAGGCATTCCTCCACCATGG+TGG | 0.706316 | 6_3:+73852820 | Msa0958730:CDS |
| TATCGCTAACCATTCAAGAG+GGG | 0.726590 | 6_3:+73851690 | Msa0958730:CDS |
| GGTTCATCAGACAATTTACG+AGG | 0.727611 | 6_3:+73852579 | Msa0958730:CDS |
| CAACAGGGAAAGAATCATGG+AGG | 0.743204 | 6_3:+73852844 | Msa0958730:CDS |
| TATGGAGTAATACCCCACGA+GGG | 0.783328 | 6_3:+73852543 | Msa0958730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACCTTATTTTTATTTTAACT+AGG | + | chr6_3:73851912-73851931 | Msa0958730:intron | 15.0% |
| !! | TCCTAGTTAAAATAAAAATA+AGG | - | chr6_3:73851916-73851935 | None:intergenic | 15.0% |
| !! | AAAATTTCAACCTAATTATT+TGG | - | chr6_3:73852290-73852309 | None:intergenic | 15.0% |
| !!! | AAAGGTATTTTTATTTAACT+AGG | + | chr6_3:73853639-73853658 | Msa0958730:intron | 15.0% |
| !! | TATAATTCACAATTTGATTA+TGG | + | chr6_3:73853815-73853834 | Msa0958730:intron | 15.0% |
| !! | CTATTTCATTATATATTACT+TGG | + | chr6_3:73853929-73853948 | Msa0958730:intron | 15.0% |
| !! | AAGAGACAATATTATATCAT+TGG | + | chr6_3:73851834-73851853 | Msa0958730:CDS | 20.0% |
| !! | ATATTATATCATTGGAACAA+AGG | + | chr6_3:73851842-73851861 | Msa0958730:CDS | 20.0% |
| !! | AATTCAAATCTCATTTAAAG+CGG | - | chr6_3:73852019-73852038 | None:intergenic | 20.0% |
| !! | TCATACACTTTCATAAATTT+AGG | + | chr6_3:73852085-73852104 | Msa0958730:intron | 20.0% |
| !!! | TTATTCATTTTCGATTTACT+TGG | + | chr6_3:73852113-73852132 | Msa0958730:intron | 20.0% |
| !!! | AACTTGAATTTTAGTTTACT+TGG | + | chr6_3:73852140-73852159 | Msa0958730:intron | 20.0% |
| !! | ATGTAAGTATATTTAATACG+AGG | + | chr6_3:73852335-73852354 | Msa0958730:intron | 20.0% |
| !! | ATAGTTAAATTCGACAAAAA+CGG | + | chr6_3:73852615-73852634 | Msa0958730:CDS | 20.0% |
| !! | ACAAATTATGAAAAGTTGAA+TGG | + | chr6_3:73852684-73852703 | Msa0958730:CDS | 20.0% |
| !!! | TATATGATATGTTAGCTTAT+AGG | + | chr6_3:73853588-73853607 | Msa0958730:intron | 20.0% |
| !! | TTTAAACCAACAAAATTGTT+TGG | - | chr6_3:73853960-73853979 | None:intergenic | 20.0% |
| ! | AACAATGCAAAACAAGAAAA+AGG | + | chr6_3:73851721-73851740 | Msa0958730:CDS | 25.0% |
| ! | TAAAATCACAAGTTAACTCA+TGG | + | chr6_3:73852060-73852079 | Msa0958730:intron | 25.0% |
| !! | GTATTTTTCGCCAAATAATT+AGG | + | chr6_3:73852277-73852296 | Msa0958730:intron | 25.0% |
| ! | TTTGTCTATAAAGAATCAAC+TGG | - | chr6_3:73852392-73852411 | None:intergenic | 25.0% |
| ! | TTCCTAATCTTATGAACATT+AGG | - | chr6_3:73852981-73853000 | None:intergenic | 25.0% |
| ! | ACAAGATAAACTCAGTATTA+AGG | + | chr6_3:73853025-73853044 | Msa0958730:CDS | 25.0% |
| ! | GTATTAAGGAAACATCTATT+TGG | + | chr6_3:73853039-73853058 | Msa0958730:CDS | 25.0% |
| ! | TCATAACTTGAGAAAAATTC+AGG | - | chr6_3:73853110-73853129 | None:intergenic | 25.0% |
| ! | CATATCATATACTAGATATG+TGG | - | chr6_3:73853579-73853598 | None:intergenic | 25.0% |
| ! | TGCTTGTTTCAAACTTAAAA+AGG | + | chr6_3:73853621-73853640 | Msa0958730:intron | 25.0% |
| !!! | AGCTAACATTATTTTTACGA+GGG | - | chr6_3:73854216-73854235 | None:intergenic | 25.0% |
| !!! | AAGCTAACATTATTTTTACG+AGG | - | chr6_3:73854217-73854236 | None:intergenic | 25.0% |
| !! | TTGATGGACATATATAATTC+AGG | + | chr6_3:73854307-73854326 | Msa0958730:intron | 25.0% |
| !!! | TGCATATTTTGGTTAAATCT+GGG | - | chr6_3:73854595-73854614 | None:intergenic | 25.0% |
| !! | AAAATTTTCATGGCAATCAA+GGG | + | chr6_3:73854629-73854648 | Msa0958730:CDS | 25.0% |
| TGCAAAACAAGAAAAAGGAA+AGG | + | chr6_3:73851726-73851745 | Msa0958730:CDS | 30.0% | |
| GGAAAAAGAGTTAACTATTG+AGG | + | chr6_3:73851747-73851766 | Msa0958730:CDS | 30.0% | |
| AATGCTGCTAAGAAAGTTAA+AGG | + | chr6_3:73851798-73851817 | Msa0958730:CDS | 30.0% | |
| GATTTGAATTCTATCTCTTG+AGG | + | chr6_3:73852029-73852048 | Msa0958730:intron | 30.0% | |
| ! | TTTGCTTAAACTCCTGATTT+TGG | + | chr6_3:73852417-73852436 | Msa0958730:intron | 30.0% |
| ! | TTGCTTAAACTCCTGATTTT+GGG | + | chr6_3:73852418-73852437 | Msa0958730:intron | 30.0% |
| ! | AATTGACTTTGTTCACCTTA+AGG | - | chr6_3:73852451-73852470 | None:intergenic | 30.0% |
| GACAATTGCTAAATATGAAG+CGG | + | chr6_3:73852644-73852663 | Msa0958730:CDS | 30.0% | |
| ATTATGAGGCTTTCTATAAG+GGG | - | chr6_3:73852904-73852923 | None:intergenic | 30.0% | |
| GATTATGAGGCTTTCTATAA+GGG | - | chr6_3:73852905-73852924 | None:intergenic | 30.0% | |
| AGATTATGAGGCTTTCTATA+AGG | - | chr6_3:73852906-73852925 | None:intergenic | 30.0% | |
| CTCCTAATGTTCATAAGATT+AGG | + | chr6_3:73852976-73852995 | Msa0958730:CDS | 30.0% | |
| ! | AAGTAATTATGTGCTTGTTG+AGG | + | chr6_3:73853145-73853164 | Msa0958730:intron | 30.0% |
| !! | AATGATTTTGATGTTGTGGA+AGG | + | chr6_3:73853170-73853189 | Msa0958730:intron | 30.0% |
| AACAAGAGAAAACGTAAACT+TGG | + | chr6_3:73853275-73853294 | Msa0958730:intron | 30.0% | |
| !!! | TGTTCCTCACATTTTTTTCT+TGG | - | chr6_3:73853379-73853398 | None:intergenic | 30.0% |
| CAACTTCAACTATATCGAAT+TGG | - | chr6_3:73853442-73853461 | None:intergenic | 30.0% | |
| GATAAGATCATTCATCATAC+AGG | + | chr6_3:73853530-73853549 | Msa0958730:CDS | 30.0% | |
| ATTCATCATACAGGTAATCA+TGG | + | chr6_3:73853539-73853558 | Msa0958730:intron | 30.0% | |
| ! | CTAGGAAAATGTTAGCTTAT+AGG | + | chr6_3:73853657-73853676 | Msa0958730:intron | 30.0% |
| ! | TAGCTTATAGGTCTCAATTT+TGG | + | chr6_3:73853669-73853688 | Msa0958730:intron | 30.0% |
| !! | TGACTCATGCTTTAGAAAAT+AGG | + | chr6_3:73853789-73853808 | Msa0958730:intron | 30.0% |
| TTCACAATTTGATTATGGTC+AGG | + | chr6_3:73853820-73853839 | Msa0958730:intron | 30.0% | |
| TCACAATTTGATTATGGTCA+GGG | + | chr6_3:73853821-73853840 | Msa0958730:intron | 30.0% | |
| !! | CCAGATTTATTTTTCTTCTG+GGG | - | chr6_3:73853883-73853902 | None:intergenic | 30.0% |
| !! | GCCAGATTTATTTTTCTTCT+GGG | - | chr6_3:73853884-73853903 | None:intergenic | 30.0% |
| !! | TGCCAGATTTATTTTTCTTC+TGG | - | chr6_3:73853885-73853904 | None:intergenic | 30.0% |
| !!! | CTAACATTATTTTTACGAGG+GGG | - | chr6_3:73854214-73854233 | None:intergenic | 30.0% |
| !!! | GCTAACATTATTTTTACGAG+GGG | - | chr6_3:73854215-73854234 | None:intergenic | 30.0% |
| AGTAATTACCTGCATTGTTA+TGG | - | chr6_3:73854261-73854280 | None:intergenic | 30.0% | |
| AGTACTATGATTCCAAATCA+GGG | + | chr6_3:73854445-73854464 | Msa0958730:CDS | 30.0% | |
| ! | CATCATTGAAGTATTCATCA+TGG | - | chr6_3:73854536-73854555 | None:intergenic | 30.0% |
| !!! | CTGCATATTTTGGTTAAATC+TGG | - | chr6_3:73854596-73854615 | None:intergenic | 30.0% |
| ! | CAAATGGACCAAAATTTTCA+TGG | + | chr6_3:73854619-73854638 | Msa0958730:CDS | 30.0% |
| ! | CTTGATTGCCATGAAAATTT+TGG | - | chr6_3:73854630-73854649 | None:intergenic | 30.0% |
| ! | CAAAATTTTCATGGCAATCA+AGG | + | chr6_3:73854628-73854647 | Msa0958730:CDS | 30.0% |
| ! | AAATTTTCATGGCAATCAAG+GGG | + | chr6_3:73854630-73854649 | Msa0958730:CDS | 30.0% |
| AACAACCTTCAATTCTCAAT+CGG | + | chr6_3:73854729-73854748 | Msa0958730:CDS | 30.0% | |
| TGGCATCATCAAGTTATAAT+TGG | + | chr6_3:73854776-73854795 | Msa0958730:CDS | 30.0% | |
| ATGTATCCCAGAGTTCATAA+TGG | + | chr6_3:73851664-73851683 | Msa0958730:CDS | 35.0% | |
| ATAGCACCATTATGAACTCT+GGG | - | chr6_3:73851673-73851692 | None:intergenic | 35.0% | |
| GTGCACAAGAACACATATTA+AGG | + | chr6_3:73851884-73851903 | Msa0958730:CDS | 35.0% | |
| TCTGAGCTTATAGTGAACTA+AGG | + | chr6_3:73852183-73852202 | Msa0958730:intron | 35.0% | |
| !! | ATTTTGGGAACTTTGCCTTA+AGG | + | chr6_3:73852433-73852452 | Msa0958730:intron | 35.0% |
| CAGGTACATGTTAATGATGA+TGG | + | chr6_3:73852494-73852513 | Msa0958730:intron | 35.0% | |
| TCATATTTAGCAATTGTCGC+TGG | - | chr6_3:73852642-73852661 | None:intergenic | 35.0% | |
| GCTAAATATGAAGCGGAAAA+TGG | + | chr6_3:73852651-73852670 | Msa0958730:CDS | 35.0% | |
| AAGTGAACCTAATATGGTGT+CGG | - | chr6_3:73852745-73852764 | None:intergenic | 35.0% | |
| TGAGAGAAGTGAACCTAATA+TGG | - | chr6_3:73852751-73852770 | None:intergenic | 35.0% | |
| ATGAGATTTAGTGAAGATCC+TGG | + | chr6_3:73852873-73852892 | Msa0958730:CDS | 35.0% | |
| TTATGAGGCTTTCTATAAGG+GGG | - | chr6_3:73852903-73852922 | None:intergenic | 35.0% | |
| AAAGCCTCATAATCTGAAGA+AGG | + | chr6_3:73852911-73852930 | Msa0958730:CDS | 35.0% | |
| CAAACCTTCTTCAGATTATG+AGG | - | chr6_3:73852918-73852937 | None:intergenic | 35.0% | |
| CTCATAATCTGAAGAAGGTT+TGG | + | chr6_3:73852916-73852935 | Msa0958730:CDS | 35.0% | |
| TAATCTGAAGAAGGTTTGGA+AGG | + | chr6_3:73852920-73852939 | Msa0958730:CDS | 35.0% | |
| AGTTATGATTCTCGTGTTGA+AGG | + | chr6_3:73853122-73853141 | Msa0958730:CDS | 35.0% | |
| !! | GGCAAATGATTTTGATGTTG+TGG | + | chr6_3:73853166-73853185 | Msa0958730:intron | 35.0% |
| TTTCTTGGTGGAATTCATGT+TGG | - | chr6_3:73853364-73853383 | None:intergenic | 35.0% | |
| TCCACCAAGAAAAAAATGTG+AGG | + | chr6_3:73853372-73853391 | Msa0958730:intron | 35.0% | |
| !!! | TCCTCACATTTTTTTCTTGG+TGG | - | chr6_3:73853376-73853395 | None:intergenic | 35.0% |
| !! | CATTTTACTAGCGCTGAAAT+AGG | + | chr6_3:73853404-73853423 | Msa0958730:intron | 35.0% |
| TGAATGATCTTATCTGCAAC+AGG | - | chr6_3:73853524-73853543 | None:intergenic | 35.0% | |
| TCATATACTAGATATGTGGC+TGG | - | chr6_3:73853575-73853594 | None:intergenic | 35.0% | |
| CACAATTTGATTATGGTCAG+GGG | + | chr6_3:73853822-73853841 | Msa0958730:intron | 35.0% | |
| CCCCAGAAGAAAAATAAATC+TGG | + | chr6_3:73853880-73853899 | Msa0958730:intron | 35.0% | |
| ! | GCTACTCCAAACAATTTTGT+TGG | + | chr6_3:73853951-73853970 | Msa0958730:intron | 35.0% |
| GTTATGGAATCCATAATCAG+CGG | - | chr6_3:73854245-73854264 | None:intergenic | 35.0% | |
| TATGGATTCCATAACAATGC+AGG | + | chr6_3:73854250-73854269 | Msa0958730:intron | 35.0% | |
| AACAATGCAGGTAATTACTC+AGG | + | chr6_3:73854262-73854281 | Msa0958730:intron | 35.0% | |
| ! | AGAAGTGGTTTCTGATTTGA+TGG | + | chr6_3:73854291-73854310 | Msa0958730:intron | 35.0% |
| TTATGATTAACACCTGGAGT+TGG | - | chr6_3:73854373-73854392 | None:intergenic | 35.0% | |
| TGCATGTTATGATTAACACC+TGG | - | chr6_3:73854379-73854398 | None:intergenic | 35.0% | |
| GAGTACTATGATTCCAAATC+AGG | + | chr6_3:73854444-73854463 | Msa0958730:CDS | 35.0% | |
| CTTTGATTAACACCCTGATT+TGG | - | chr6_3:73854460-73854479 | None:intergenic | 35.0% | |
| ! | CCATTTGATGCTGCATATTT+TGG | - | chr6_3:73854606-73854625 | None:intergenic | 35.0% |
| CCAAAATATGCAGCATCAAA+TGG | + | chr6_3:73854603-73854622 | Msa0958730:CDS | 35.0% | |
| ! | AATTTTCATGGCAATCAAGG+GGG | + | chr6_3:73854631-73854650 | Msa0958730:CDS | 35.0% |
| ACATTAGCTACTTCAGCATT+AGG | - | chr6_3:73854685-73854704 | None:intergenic | 35.0% | |
| ! | AGAATTGAAGGTTGTTGTTG+AGG | - | chr6_3:73854725-73854744 | None:intergenic | 35.0% |
| AACATCCGATTGAGAATTGA+AGG | - | chr6_3:73854737-73854756 | None:intergenic | 35.0% | |
| TGATGCTTACAACAACTTTG+TGG | + | chr6_3:73854756-73854775 | Msa0958730:CDS | 35.0% | |
| GATAGCACCATTATGAACTC+TGG | - | chr6_3:73851674-73851693 | None:intergenic | 40.0% | |
| CTATCGCTAACCATTCAAGA+GGG | + | chr6_3:73851689-73851708 | Msa0958730:CDS | 40.0% | |
| TATCGCTAACCATTCAAGAG+GGG | + | chr6_3:73851690-73851709 | Msa0958730:CDS | 40.0% | |
| ATTCTATCTCTTGAGGCAAC+TGG | + | chr6_3:73852036-73852055 | Msa0958730:intron | 40.0% | |
| AAGGCAAAGTTCCCAAAATC+AGG | - | chr6_3:73852432-73852451 | None:intergenic | 40.0% | |
| AACATGTACCTGTTCACACT+AGG | - | chr6_3:73852486-73852505 | None:intergenic | 40.0% | |
| TTGTCTGATGAACCACTCAT+TGG | - | chr6_3:73852573-73852592 | None:intergenic | 40.0% | |
| GGTTCATCAGACAATTTACG+AGG | + | chr6_3:73852579-73852598 | Msa0958730:CDS | 40.0% | |
| TTCAGCGAGTGAAGTGTAAT+TGG | - | chr6_3:73852714-73852733 | None:intergenic | 40.0% | |
| AGTGAACCTAATATGGTGTC+GGG | - | chr6_3:73852744-73852763 | None:intergenic | 40.0% | |
| ! | GGTTTGGAAGGTTTACGTTT+TGG | + | chr6_3:73852932-73852951 | Msa0958730:CDS | 40.0% |
| GGAACATAGTCAGACAATCA+AGG | + | chr6_3:73852997-73853016 | Msa0958730:CDS | 40.0% | |
| !! | GATTTTGATGTTGTGGAAGG+TGG | + | chr6_3:73853173-73853192 | Msa0958730:intron | 40.0% |
| TGGAATTCATGTTGGTCAAG+AGG | - | chr6_3:73853356-73853375 | None:intergenic | 40.0% | |
| AATGCAGGTAATTACTCAGG+AGG | + | chr6_3:73854265-73854284 | Msa0958730:intron | 40.0% | |
| TGGAATCATCGTACTCATGA+CGG | - | chr6_3:73854353-73854372 | None:intergenic | 40.0% | |
| CACTTGCATGGTAGATTTGA+TGG | - | chr6_3:73854402-73854421 | None:intergenic | 40.0% | |
| TCCAATGCCAGTTATGAACA+TGG | + | chr6_3:73854561-73854580 | Msa0958730:CDS | 40.0% | |
| ACCATGTTCATAACTGGCAT+TGG | - | chr6_3:73854565-73854584 | None:intergenic | 40.0% | |
| GTTGCAACCATGTTCATAAC+TGG | - | chr6_3:73854571-73854590 | None:intergenic | 40.0% | |
| GCTATCGCTAACCATTCAAG+AGG | + | chr6_3:73851688-73851707 | Msa0958730:CDS | 45.0% | |
| TTGAAGCTTCCCCTCTTGAA+TGG | - | chr6_3:73851702-73851721 | None:intergenic | 45.0% | |
| ATGGAAGTTTGTGATGCTCG+TGG | + | chr6_3:73852513-73852532 | Msa0958730:CDS | 45.0% | |
| TATGGAGTAATACCCCACGA+GGG | + | chr6_3:73852543-73852562 | Msa0958730:CDS | 45.0% | |
| CATCAGACAATTTACGAGGC+TGG | + | chr6_3:73852583-73852602 | Msa0958730:CDS | 45.0% | |
| GAACTACCCGACACCATATT+AGG | + | chr6_3:73852735-73852754 | Msa0958730:CDS | 45.0% | |
| CGGAGATTTCCGTTGGAAAA+AGG | + | chr6_3:73852801-73852820 | Msa0958730:CDS | 45.0% | |
| ! | GGAGGAATGCCTTTTTCCAA+CGG | - | chr6_3:73852813-73852832 | None:intergenic | 45.0% |
| !! | AAAAAGGCATTCCTCCACCA+TGG | + | chr6_3:73852817-73852836 | Msa0958730:CDS | 45.0% |
| CTCCATGATTCTTTCCCTGT+TGG | - | chr6_3:73852846-73852865 | None:intergenic | 45.0% | |
| CAACAGGGAAAGAATCATGG+AGG | + | chr6_3:73852844-73852863 | Msa0958730:CDS | 45.0% | |
| !! | GAAGGTTTACGTTTTGGCAG+CGG | + | chr6_3:73852938-73852957 | Msa0958730:CDS | 45.0% |
| ! | GACGATGACGATGATGATGA+TGG | - | chr6_3:73853242-73853261 | None:intergenic | 45.0% |
| ATCATCGTCATCGTCGTATG+AGG | + | chr6_3:73853247-73853266 | Msa0958730:intron | 45.0% | |
| TCATCGTCATCGTCGTATGA+GGG | + | chr6_3:73853248-73853267 | Msa0958730:intron | 45.0% | |
| GCGAATCCCTTCACATCAAT+GGG | + | chr6_3:73853844-73853863 | Msa0958730:intron | 45.0% | |
| CGAATCCCTTCACATCAATG+GGG | + | chr6_3:73853845-73853864 | Msa0958730:intron | 45.0% | |
| TGCTACCCCATTGATGTGAA+GGG | - | chr6_3:73853853-73853872 | None:intergenic | 45.0% | |
| ATGCTACCCCATTGATGTGA+AGG | - | chr6_3:73853854-73853873 | None:intergenic | 45.0% | |
| TCACATCAATGGGGTAGCAT+TGG | + | chr6_3:73853854-73853873 | Msa0958730:intron | 45.0% | |
| ATGGAATCCATAATCAGCGG+CGG | - | chr6_3:73854242-73854261 | None:intergenic | 45.0% | |
| AGTACGATGATTCCAACTCC+AGG | + | chr6_3:73854358-73854377 | Msa0958730:CDS | 45.0% | |
| CTACCATGCAAGTGTTCAAC+AGG | + | chr6_3:73854408-73854427 | Msa0958730:CDS | 45.0% | |
| TCTCCTGTTGAACACTTGCA+TGG | - | chr6_3:73854414-73854433 | None:intergenic | 45.0% | |
| ! | GTTGAGGCATTTGCTTGCAT+TGG | - | chr6_3:73854709-73854728 | None:intergenic | 45.0% |
| AGCTGACACCTAGTGTGAAC+AGG | + | chr6_3:73852475-73852494 | Msa0958730:intron | 50.0% | |
| GATGCTCGTGGCTTCATCTA+TGG | + | chr6_3:73852525-73852544 | Msa0958730:CDS | 50.0% | |
| CTATGGAGTAATACCCCACG+AGG | + | chr6_3:73852542-73852561 | Msa0958730:CDS | 50.0% | |
| !! | ACTCATTGGTTTGCCCTCGT+GGG | - | chr6_3:73852559-73852578 | None:intergenic | 50.0% |
| CAGACAATTTACGAGGCTGG+TGG | + | chr6_3:73852586-73852605 | Msa0958730:CDS | 50.0% | |
| ACGGAAATCTCCGTTGTGGT+GGG | - | chr6_3:73852794-73852813 | None:intergenic | 50.0% | |
| AACGGAAATCTCCGTTGTGG+TGG | - | chr6_3:73852795-73852814 | None:intergenic | 50.0% | |
| ACCACAACGGAGATTTCCGT+TGG | + | chr6_3:73852794-73852813 | Msa0958730:CDS | 50.0% | |
| TCCAACGGAAATCTCCGTTG+TGG | - | chr6_3:73852798-73852817 | None:intergenic | 50.0% | |
| GGCCAACAGGGAAAGAATCA+TGG | + | chr6_3:73852841-73852860 | Msa0958730:CDS | 50.0% | |
| TTTCTATAAGGGGGTAGGCC+AGG | - | chr6_3:73852894-73852913 | None:intergenic | 50.0% | |
| GAGGCTTTCTATAAGGGGGT+AGG | - | chr6_3:73852899-73852918 | None:intergenic | 50.0% | |
| GGCGAATCCCTTCACATCAA+TGG | + | chr6_3:73853843-73853862 | Msa0958730:intron | 50.0% | |
| GCAGGTAATTACTCAGGAGG+AGG | + | chr6_3:73854268-73854287 | Msa0958730:intron | 50.0% | |
| TTACTCAGGAGGAGGAGAAG+TGG | + | chr6_3:73854276-73854295 | Msa0958730:intron | 50.0% | |
| !! | CTCATTGGTTTGCCCTCGTG+GGG | - | chr6_3:73852558-73852577 | None:intergenic | 55.0% |
| !! | CACTCATTGGTTTGCCCTCG+TGG | - | chr6_3:73852560-73852579 | None:intergenic | 55.0% |
| CACGAGGGCAAACCAATGAG+TGG | + | chr6_3:73852558-73852577 | Msa0958730:CDS | 55.0% | |
| !! | CGTTGTGGTGGGTCACAATG+CGG | - | chr6_3:73852783-73852802 | None:intergenic | 55.0% |
| CGCATTGTGACCCACCACAA+CGG | + | chr6_3:73852781-73852800 | Msa0958730:CDS | 55.0% | |
| ! | AAGGCATTCCTCCACCATGG+TGG | + | chr6_3:73852820-73852839 | Msa0958730:CDS | 55.0% |
| TCTTTCCCTGTTGGCCACCA+TGG | - | chr6_3:73852837-73852856 | None:intergenic | 55.0% | |
| TACCGCAGCTTGCACACGTT+GGG | - | chr6_3:73853501-73853520 | None:intergenic | 55.0% | |
| CTCCACCATGGTGGCCAACA+GGG | + | chr6_3:73852829-73852848 | Msa0958730:CDS | 60.0% | |
| TTCCCTGTTGGCCACCATGG+TGG | - | chr6_3:73852834-73852853 | None:intergenic | 60.0% | |
| GCTTGCACACGTTGGGCAAG+AGG | - | chr6_3:73853494-73853513 | None:intergenic | 60.0% | |
| TGCCCAACGTGTGCAAGCTG+CGG | + | chr6_3:73853496-73853515 | Msa0958730:CDS | 60.0% | |
| GTACCGCAGCTTGCACACGT+TGG | - | chr6_3:73853502-73853521 | None:intergenic | 60.0% | |
| ! | AGCTTCGCCGCCGCTGATTA+TGG | + | chr6_3:73854232-73854251 | Msa0958730:intron | 60.0% |
| CCTGTTGGCCACCATGGTGG+AGG | - | chr6_3:73852831-73852850 | None:intergenic | 65.0% | |
| CCTCCACCATGGTGGCCAAC+AGG | + | chr6_3:73852828-73852847 | Msa0958730:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 73851664 | 73854807 | 73851664 | ID=Msa0958730;Name=Msa0958730 |
| chr6_3 | mRNA | 73851664 | 73854807 | 73851664 | ID=Msa0958730-mRNA-1;Parent=Msa0958730;Name=Msa0958730-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|4|0|498 |
| chr6_3 | exon | 73851664 | 73851905 | 73851664 | ID=Msa0958730-mRNA-1:exon:13326;Parent=Msa0958730-mRNA-1 |
| chr6_3 | exon | 73852497 | 73853146 | 73852497 | ID=Msa0958730-mRNA-1:exon:13327;Parent=Msa0958730-mRNA-1 |
| chr6_3 | exon | 73853426 | 73853551 | 73853426 | ID=Msa0958730-mRNA-1:exon:13328;Parent=Msa0958730-mRNA-1 |
| chr6_3 | exon | 73854329 | 73854807 | 73854329 | ID=Msa0958730-mRNA-1:exon:13329;Parent=Msa0958730-mRNA-1 |
| chr6_3 | CDS | 73851664 | 73851905 | 73851664 | ID=Msa0958730-mRNA-1:cds;Parent=Msa0958730-mRNA-1 |
| chr6_3 | CDS | 73852497 | 73853146 | 73852497 | ID=Msa0958730-mRNA-1:cds;Parent=Msa0958730-mRNA-1 |
| chr6_3 | CDS | 73853426 | 73853551 | 73853426 | ID=Msa0958730-mRNA-1:cds;Parent=Msa0958730-mRNA-1 |
| chr6_3 | CDS | 73854329 | 73854807 | 73854329 | ID=Msa0958730-mRNA-1:cds;Parent=Msa0958730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
