AlfalfaGEDB | Msa0958820

M. sativa cultivar zhongmu-4 / Msa0958820

KEGG: K14514
GO: -
PFAM: PF04873.16

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0958820	sp\|O24606\|EIN3_ARATH	39.406	505	242	11	31	493	37	519	5.17e-106	338

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0958820	A0A072U9J0	78.824	680	110	7	1	665	1	661	0.0	1037

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0958820	TF	EIL

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0958820	MtrunA17_Chr6g0476301	83.095	349	42	3	91	429	1	342	0.0	573
Msa0958820	MtrunA17_Chr6g0473191	85.135	296	35	1	91	377	1	296	3.01e-175	501
Msa0958820	MtrunA17_Chr6g0476291	86.296	270	37	0	91	360	1	270	3.47e-164	471
Msa0958820	MtrunA17_Chr3g0118361	42.457	464	218	13	42	467	51	503	9.86e-112	350
Msa0958820	MtrunA17_Chr5g0440591	50.779	321	147	4	4	318	14	329	3.02e-109	343
Msa0958820	MtrunA17_Chr3g0080401	48.907	366	145	9	91	443	1	337	6.51e-109	333
Msa0958820	MtrunA17_Chr2g0329151	53.184	267	114	3	32	290	27	290	5.57e-96	308
Msa0958820	MtrunA17_Chr3g0124291	51.163	258	104	6	43	287	32	280	1.52e-86	278
Msa0958820	MtrunA17_Chr8g0382561	46.816	267	133	5	29	287	6	271	1.94e-77	254
Msa0958820	MtrunA17_Chr7g0260281	47.692	65	34	0	80	144	1	65	2.00e-15	73.2

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0958820	AT3G20770.1	39.406	505	242	11	31	493	37	519	5.26e-107	338
Msa0958820	AT2G27050.1	39.673	489	218	11	31	472	36	494	1.03e-105	333
Msa0958820	AT1G73730.2	51.493	268	117	3	31	290	14	276	1.10e-91	295
Msa0958820	AT1G73730.1	51.493	268	117	3	31	290	26	288	1.92e-91	295
Msa0958820	AT5G10120.1	49.615	260	123	3	36	287	16	275	1.60e-87	282
Msa0958820	AT5G65100.1	46.263	281	119	7	38	291	33	308	1.44e-79	264
Msa0958820	AT5G21120.3	46.667	255	125	3	48	291	53	307	6.21e-74	248
Msa0958820	AT5G21120.1	46.667	255	125	3	48	291	53	307	6.21e-74	248
Msa0958820	AT5G21120.2	46.667	255	125	3	48	291	60	314	6.72e-74	248

Showing 1 to 9 of 9 entries

Previous1Next

Find 128 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCTATGGTCAACAA+GGG	0.632348	6_3:-74877069	Msa0958820:CDS
AAAGCCTCATGATCTGAAGA+AGG	0.573569	6_3:-74878987	Msa0958820:CDS
AAATTTCTATGGTCAACAAG+GGG	0.633963	6_3:-74877068	Msa0958820:CDS
AACAACCAATTTCAAATGGC+TGG	0.404663	6_3:-74878470	Msa0958820:CDS
AACAAGAGAAAGCGTGTACT+TGG	0.454094	6_3:-74878623	Msa0958820:CDS
AACAATGCAAAACAAGAAAA+AGG	0.304941	6_3:-74879871	Msa0958820:CDS
AACAATGCAGGTAATTACTC+AGG	0.576216	6_3:-74877526	Msa0958820:CDS
AAGAGACAACACTACATCAT+TGG	0.447664	6_3:-74879734	Msa0958820:CDS
AAGGCATTCCTCCACCATGG+TGG	0.706316	6_3:-74879078	Msa0958820:CDS
AAGGGAACTTAATATGGTAT+CGG	0.502090	6_3:+74879156	None:intergenic

Showing 1 to 10 of 128 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GATAGCACCATTATAAACAT+TGG	+	chr6_3:74876863-74876882	None:intergenic	30.0%
TGCAAAACAAGAAAAAGGAA+AGG	-	chr6_3:74876915-74876934	Msa0958820:CDS	30.0%
ACAAGAAAAAGGAAAGGAAA+AGG	-	chr6_3:74876921-74876940	Msa0958820:CDS	30.0%
GAAAAAAGAGCTAACTATTG+AGG	-	chr6_3:74876960-74876979	Msa0958820:CDS	30.0%
AATGCTGCTAAAAAAGATGA+AGG	-	chr6_3:74877011-74877030	Msa0958820:CDS	30.0%
ACAAAGGAAAAGAAAGACAA+TGG	-	chr6_3:74877071-74877090	Msa0958820:CDS	30.0%
GCTAAATATGAAGCAGAAAA+TGG	-	chr6_3:74877534-74877553	Msa0958820:CDS	30.0%
TTCAGCAATTCGAATGTAAT+TGG	+	chr6_3:74877597-74877616	None:intergenic	30.0%
AAGGGAACTTAATATGGTAT+CGG	+	chr6_3:74877628-74877647	None:intergenic	30.0%
TGATAGAAGGGAACTTAATA+TGG	+	chr6_3:74877634-74877653	None:intergenic	30.0%

Showing 1 to 10 of 188 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	74876853	74879950	74876853	ID=Msa0958820;Name=Msa0958820
chr6_3	mRNA	74876853	74879950	74876853	ID=Msa0958820-mRNA-1;Parent=Msa0958820;Name=Msa0958820-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|1\|1\|1\|3\|0\|675
chr6_3	exon	74879685	74879950	74879685	ID=Msa0958820-mRNA-1:exon:13365;Parent=Msa0958820-mRNA-1
chr6_3	exon	74878409	74879423	74878409	ID=Msa0958820-mRNA-1:exon:13364;Parent=Msa0958820-mRNA-1
chr6_3	exon	74876853	74877599	74876853	ID=Msa0958820-mRNA-1:exon:13363;Parent=Msa0958820-mRNA-1
chr6_3	CDS	74879685	74879950	74879685	ID=Msa0958820-mRNA-1:cds;Parent=Msa0958820-mRNA-1
chr6_3	CDS	74878409	74879423	74878409	ID=Msa0958820-mRNA-1:cds;Parent=Msa0958820-mRNA-1
chr6_3	CDS	74876853	74877599	74876853	ID=Msa0958820-mRNA-1:cds;Parent=Msa0958820-mRNA-1

Gene Sequence

>Msa0958820

ATGCATTCCAATGTTTATAATGGTGCTATCGCTAACCCTTCAAGGGGAGAAGCTTCAAACAATGCAAAACAAGAAAAAGGAAAGGAAAAGGTAGAAGATGAAATTGAGAAAAAAGAGCTAACTATTGAGGAACTAGAGGCAAAGATATCTAAAGATAAAATGCTGCTAAAAAAGATGAAGGAAGAAAGAAGTAAAAGAGACAACACTACATCATTGGAACAAAGGAAAAGAAAGACAATGGCTCGTGCACAAGAGCGTGTATTAAGGCACATGTTAAAGATGATGGAAGTTTGTGATGCTCGTGGCTTCATCTATGGAGTAATACCTCACGAGGGCAAACCAATGAGTGGTTCATCAGACAATTTACGAGGCTGGTGGAAAGACATAGTTAAATTCGACAAAAACGGTCCAGCGGCAATTGCTAAATATGAAGCAGAAAATGGAATTACAACAACAAATTATGAAAAGTTGAATGGTGAACCAATTACATTCGAATTGCTGAATGAACTACCCGATACCATATTAAGTTCCCTTCTATCATCATTAGTGCCGCATTGCGACCCACCACAACGGAGATTTCCATTGGAAAAAGGCATTCCTCCACCATGGTGGCCAACTGGGAAAGAATCATGGTGGAATGAGATGAGATTTAGTGAAGATCTTGGCATACCCCCTTATAGAAAGCCTCATGATCTGAAGAAGGTTTGGAAGGTTTATGTTTTGGCAGCTGTAATAAAACACATGTCTCCTAACATTCAGAAGATTAGGAACATTGTCAAACAGTCAAGGAATTTACAAGATAAACTCACCATTAAGGAAACAACCATTTGGTTTGCTATTATTAATCATGAAGAAACAATTGCAAGAAAACTACATCCTGAATTTTTCTCAAGTTTTGATTCTTGTGTTGAAGGAAGTAATTATGTGCTTGTTGAGGAAAATGATTTTGATGTTGTGGAAGGCGGTGAGCACAATCTAGCAAAACGAAAACTATCATCATCATCTTCACCATCATCATCATCGTCATCGTCATATGAGGGTACTAACAAGAGAAAGCGTGTACTTGGTAAGAGAATTAGTACTGAACATGCTACACCTCTTGATCAACATGAATTCCAGCAAGAGAGAAATGTGAGAAACAATCATCACTTTACTAGTACACAACTAGGAAGCAGCACCAACATCAACAACAACGACAACAACCAATTTCAAATGGCTGGATTTGAAGTGTCAACAGTTCATCAAAATGTTGCACCTCTTGACCAACGTGTGCAAGCTGCGCCCCCTCGTAAAAATTGTGTTAGCTTCGCCGCTGCTGATTATGGATTCCATAACAATGCAGGTAATTACTCAGGAGGAGAAGAAGTGGTTTCTGATTTGATGGACGTATATAATTCAGGCATTCAGCCGAATAAAAACACCGTCATGAGTACGATGATTCCAACTCCCGGTGTTAATCATAACATGCACCACCAAATCTACCATGCAAGTGTTCAACAGGAGAAGAACAGCATGAGTACTATGATTCCAAATCACGGTGTCAATCAAAGCATGCATCGTCAAATCTACACCGGAAGTGTTCAACAGAACAAGAACACCATCATGAGTACTATGGTTCCAACGCCTAGTGTTAATCAAAACTTGCATCCTCAAGTCTACACTTCAAGTGTTCATGAACAACAGAGGAGCAACACCATGATGAATAGTTCAATGATGAGTACTTCAATGCCAGTTATGAACATGGTTTCAACTTCCGGATTTAGCCAAAACATGCAGCCTCAAATGGACCAAAATTTCTATGGTCAACAAGGGGGTGCAGATAGCTACTATCACTACAAAGTGCCTTATGTTCCAATGCAAGCAAATACCTCAACAACAACCTTTGATTCATCTTTTGATCATTTGAATGCATTCAATTCTCAATCTGATTTTGATGCTTACATCAACTCAGCATTTATTGACTCTCCTACTGTGGCATCATCAAGTTATGATTTCTCAACGTTCGACCAAAAGGGAATCAATAATTAA

Protein sequence

>Msa0958820

MHSNVYNGAIANPSRGEASNNAKQEKGKEKVEDEIEKKELTIEELEAKISKDKMLLKKMKEERSKRDNTTSLEQRKRKTMARAQERVLRHMLKMMEVCDARGFIYGVIPHEGKPMSGSSDNLRGWWKDIVKFDKNGPAAIAKYEAENGITTTNYEKLNGEPITFELLNELPDTILSSLLSSLVPHCDPPQRRFPLEKGIPPPWWPTGKESWWNEMRFSEDLGIPPYRKPHDLKKVWKVYVLAAVIKHMSPNIQKIRNIVKQSRNLQDKLTIKETTIWFAIINHEETIARKLHPEFFSSFDSCVEGSNYVLVEENDFDVVEGGEHNLAKRKLSSSSSPSSSSSSSYEGTNKRKRVLGKRISTEHATPLDQHEFQQERNVRNNHHFTSTQLGSSTNINNNDNNQFQMAGFEVSTVHQNVAPLDQRVQAAPPRKNCVSFAAADYGFHNNAGNYSGGEEVVSDLMDVYNSGIQPNKNTVMSTMIPTPGVNHNMHHQIYHASVQQEKNSMSTMIPNHGVNQSMHRQIYTGSVQQNKNTIMSTMVPTPSVNQNLHPQVYTSSVHEQQRSNTMMNSSMMSTSMPVMNMVSTSGFSQNMQPQMDQNFYGQQGGADSYYHYKVPYVPMQANTSTTTFDSSFDHLNAFNSQSDFDAYINSAFIDSPTVASSSYDFSTFDQKGINN*