Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0961050 | sp|Q6NUH2|NAA40_XENLA | 32.787 | 244 | 132 | 5 | 23 | 264 | 10 | 223 | 4.82e-28 | 113 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0961050 | G7KHW9 | 88.636 | 264 | 24 | 1 | 1 | 264 | 1 | 258 | 2.92e-169 | 482 |
Gene ID | Type | Classification |
---|---|---|
Msa0961050 | TR | GNAT |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0961050 | MtrunA17_Chr6g0479551 | 88.931 | 262 | 23 | 1 | 1 | 262 | 1 | 256 | 1.61e-172 | 481 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0961050 | AT1G18335.1 | 50.943 | 265 | 118 | 4 | 3 | 263 | 6 | 262 | 2.76e-78 | 242 |
Msa0961050 | AT1G18335.3 | 51.136 | 264 | 117 | 4 | 3 | 262 | 6 | 261 | 1.44e-77 | 240 |
Msa0961050 | AT1G18335.2 | 51.136 | 264 | 117 | 4 | 3 | 262 | 6 | 261 | 1.44e-77 | 240 |
Find 117 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTTTACATCTGGTTATTT+TGG | 0.070234 | 6_3:-81641615 | Msa0961050:three_prime_UTR |
CTCTCATAGGACACGGCTTC+TGG | 0.284691 | 6_3:-81642326 | Msa0961050:intron |
CTCTCATAGGACACGGCTTC+TGG | 0.284691 | 6_3:-81642864 | Msa0961050:intron |
CTCTGAATATATTGCGTAAC+AGG | 0.291924 | 6_3:+81646245 | None:intergenic |
TTAGCTTAAGAGCTCTATTC+AGG | 0.293764 | 6_3:+81641958 | None:intergenic |
CTCTCGTAGGACATGGCTTC+TGG | 0.304045 | 6_3:-81642502 | Msa0961050:intron |
CAGCCTCATGCTCAGTTGAT+TGG | 0.328993 | 6_3:+81642814 | None:intergenic |
TCATGCTCAGTTGATTGGTT+GGG | 0.334696 | 6_3:+81642819 | None:intergenic |
GATTTCGAAGCGGCGATAAT+CGG | 0.344464 | 6_3:+81647412 | None:intergenic |
CTCAGTTGGTTGGATGGGTT+CGG | 0.361326 | 6_3:+81642462 | None:intergenic |
ACCATTGGATCAACTTTAGA+AGG | 0.362053 | 6_3:+81644068 | None:intergenic |
CTCGCCCTCAGTTGGTTGGA+TGG | 0.379337 | 6_3:+81642456 | None:intergenic |
AGCGTCTCCGAGTTCATTGC+TGG | 0.379618 | 6_3:+81647663 | None:intergenic |
TGTACATTACCGCTTTGTTT+TGG | 0.388601 | 6_3:-81645282 | Msa0961050:CDS |
TCGTCGTCAGTTGGTTCGTC+GGG | 0.389680 | 6_3:+81642281 | None:intergenic |
CAAATCAGCTTATAGCATAA+AGG | 0.405600 | 6_3:-81647453 | Msa0961050:CDS |
CTCATGCTCAGTTGATTGGT+TGG | 0.408139 | 6_3:+81642818 | None:intergenic |
AATTCCGAAATACATCCTAT+TGG | 0.410113 | 6_3:+81641981 | None:intergenic |
ATTTCGAAGCGGCGATAATC+GGG | 0.416262 | 6_3:+81647413 | None:intergenic |
CTCTCATAGGACATGACTTC+GGG | 0.417664 | 6_3:-81642682 | Msa0961050:intron |
CTCGTCCTCAGTTGGTTGGA+TGG | 0.420386 | 6_3:+81642636 | None:intergenic |
CTTCTCATGTTAACTGCATT+GGG | 0.422239 | 6_3:-81641481 | Msa0961050:three_prime_UTR |
TCGTCCTCAGTTGGTTGGAT+GGG | 0.424743 | 6_3:+81642637 | None:intergenic |
CGTGTCCAGGGGAAAGGATT+GGG | 0.426522 | 6_3:-81645212 | Msa0961050:CDS |
ATATATTCAGAGACTTCTTA+AGG | 0.426624 | 6_3:-81646234 | Msa0961050:intron |
TAAGCCAATAGGATGTATTT+CGG | 0.427792 | 6_3:-81641985 | Msa0961050:three_prime_UTR |
GCTTCTCATGTTAACTGCAT+TGG | 0.428232 | 6_3:-81641482 | Msa0961050:three_prime_UTR |
ACAGCTCGAGCCTCGTGTCC+AGG | 0.444598 | 6_3:-81645225 | Msa0961050:CDS |
ACAAATATATAGCGTGCTTC+AGG | 0.453405 | 6_3:+81645407 | None:intergenic |
AGCTCGAACTTGCAGGAGTT+AGG | 0.457690 | 6_3:+81641521 | None:intergenic |
TCTTCTTGACGACTAGTTGA+AGG | 0.460099 | 6_3:+81645326 | None:intergenic |
AAAGGTGAAGCGTAGAGAAA+TGG | 0.460189 | 6_3:-81645435 | Msa0961050:CDS |
CTCAGTTGATTGGTTGGGGT+CGG | 0.462972 | 6_3:+81642824 | None:intergenic |
GTTGATTGGTTGGGGTCGGC+AGG | 0.463023 | 6_3:+81642828 | None:intergenic |
CAGCCTCGTCCTCAGTTGGT+TGG | 0.465098 | 6_3:+81642632 | None:intergenic |
CTTAACATGGAAGGGCCATA+TGG | 0.467460 | 6_3:-81645479 | Msa0961050:CDS |
GCTTTCCCAATCCTTTCCCC+TGG | 0.468580 | 6_3:+81645207 | None:intergenic |
CAGGATAGTGAATGAGTTGG+AGG | 0.471220 | 6_3:-81641713 | Msa0961050:three_prime_UTR |
CAGCCTCGCCCTCAGTTGGT+TGG | 0.474613 | 6_3:+81642452 | None:intergenic |
AGGATTGGGAAAGCTTCTAA+TGG | 0.474839 | 6_3:-81645198 | Msa0961050:CDS |
CTGTCGTGCTAACTGTTCAA+AGG | 0.475803 | 6_3:-81644888 | Msa0961050:CDS |
TATAGTATGTTTGATATCGC+AGG | 0.477265 | 6_3:-81641553 | Msa0961050:three_prime_UTR |
GGCGTTGTTGTGTGTTGCAT+TGG | 0.479559 | 6_3:+81647623 | None:intergenic |
GTTGGTTCGTCGGGGTCACC+TGG | 0.481274 | 6_3:+81642290 | None:intergenic |
CTCGTCGTCAGTTGGTTCGT+CGG | 0.482006 | 6_3:+81642280 | None:intergenic |
TCGCCCTCAGTTGGTTGGAT+GGG | 0.482404 | 6_3:+81642457 | None:intergenic |
TCCAAAATAACCAGATGTAA+AGG | 0.486804 | 6_3:+81641614 | None:intergenic |
CAGCTCGAGCCTCGTGTCCA+GGG | 0.491833 | 6_3:-81645224 | Msa0961050:CDS |
GAAGATAGTGGTCCCTTGGT+TGG | 0.492453 | 6_3:-81645308 | Msa0961050:CDS |
CATGCTCAGTTGATTGGTTG+GGG | 0.499435 | 6_3:+81642820 | None:intergenic |
TATTGAGCTTATCGCCCAAA+AGG | 0.500241 | 6_3:-81645171 | Msa0961050:intron |
CAATGCTAACCTTTCGGCAT+CGG | 0.501747 | 6_3:+81642127 | None:intergenic |
CGTCCTCAGTTGGTTGGATG+GGG | 0.507573 | 6_3:+81642638 | None:intergenic |
TCTTGCCACTCAGATCCATA+TGG | 0.513626 | 6_3:+81645464 | None:intergenic |
ACATGAGGAAGTAAGCCAAT+AGG | 0.517317 | 6_3:-81641996 | Msa0961050:exon |
CTCTCCGTGTGTTTAAAGTC+AGG | 0.520731 | 6_3:-81646290 | Msa0961050:CDS |
ATTTCAGCCTCGCCCTCAGT+TGG | 0.524801 | 6_3:+81642448 | None:intergenic |
TCGTGTCCAGGGGAAAGGAT+TGG | 0.525244 | 6_3:-81645213 | Msa0961050:CDS |
TGAGTGGCAAGAGGAAGAAA+AGG | 0.525897 | 6_3:-81645453 | Msa0961050:CDS |
ATCTACAGCTTAACATGGAA+GGG | 0.529467 | 6_3:-81645487 | Msa0961050:intron |
GTTGGTTGGATGGGTTCGGC+AGG | 0.532279 | 6_3:+81642466 | None:intergenic |
CTCAGTTGGTTGGATGGGGT+CGG | 0.532291 | 6_3:+81642642 | None:intergenic |
GAGCCTCGTGTCCAGGGGAA+AGG | 0.535185 | 6_3:-81645218 | Msa0961050:CDS |
CATCCAACCAACTGAGGGCG+AGG | 0.539135 | 6_3:-81642455 | Msa0961050:CDS |
AATCTACAGCTTAACATGGA+AGG | 0.544882 | 6_3:-81645488 | Msa0961050:intron |
TGTGTGTTGCATTGGTTCCA+CGG | 0.547362 | 6_3:+81647631 | None:intergenic |
ATTTCAGCCTCGTCGTCAGT+TGG | 0.553072 | 6_3:+81642272 | None:intergenic |
CCGAGTTCATTGCTGGTGAG+TGG | 0.555140 | 6_3:+81647670 | None:intergenic |
ACCTTCTAAAGTTGATCCAA+TGG | 0.555355 | 6_3:-81644069 | Msa0961050:intron |
GTTGGTTGGATGGGGTCGGA+AGG | 0.556428 | 6_3:+81642646 | None:intergenic |
TCAAGAAGATAGTGGTCCCT+TGG | 0.557490 | 6_3:-81645312 | Msa0961050:CDS |
ACGTTGATGCCGATGCCGAA+AGG | 0.559474 | 6_3:-81642136 | Msa0961050:intron |
ATTTCAGCCTCGTCCTCAGT+TGG | 0.560819 | 6_3:+81642628 | None:intergenic |
CCTCTCATAGGACATGACTT+CGG | 0.565717 | 6_3:-81642683 | Msa0961050:intron |
GCTAATGATGTCGTTGCTGA+AGG | 0.566188 | 6_3:-81641940 | Msa0961050:intron |
GGATTTATCTCAAATTCCCA+AGG | 0.569573 | 6_3:-81641594 | Msa0961050:three_prime_UTR |
ACGCTATATATTTGTGCATG+AGG | 0.569652 | 6_3:-81645399 | Msa0961050:CDS |
CATCCAACCAACTGAGGACG+AGG | 0.575763 | 6_3:-81642635 | Msa0961050:CDS |
TTGCAGGATAGTGAATGAGT+TGG | 0.581840 | 6_3:-81641716 | Msa0961050:intron |
AGTTCATACACATAAAGTAC+TGG | 0.583472 | 6_3:+81645248 | None:intergenic |
TGTCGTGCTAACTGTTCAAA+GGG | 0.585683 | 6_3:-81644887 | Msa0961050:CDS |
TAACCTTCTCTCTGTTACGA+CGG | 0.587012 | 6_3:+81647602 | None:intergenic |
CCACTCACCAGCAATGAACT+CGG | 0.587556 | 6_3:-81647670 | Msa0961050:exon |
ACTAGTCGTCAAGAAGATAG+TGG | 0.589965 | 6_3:-81645320 | Msa0961050:CDS |
AAAGGAAAAGTGCAAGACAC+AGG | 0.590134 | 6_3:+81641632 | None:intergenic |
CAACCAATCAACTGAGCATG+AGG | 0.596952 | 6_3:-81642817 | Msa0961050:CDS |
AATCCTTTCCCCTGGACACG+AGG | 0.597062 | 6_3:+81645215 | None:intergenic |
CATTGGTTCCACGGTCACGT+TGG | 0.600954 | 6_3:+81647640 | None:intergenic |
ATAGTATGTTTGATATCGCA+GGG | 0.610547 | 6_3:-81641552 | Msa0961050:three_prime_UTR |
CGAACCCATCCAACCAACTG+AGG | 0.610550 | 6_3:-81642461 | Msa0961050:CDS |
GAACCCATCCAACCAACTGA+GGG | 0.612877 | 6_3:-81642460 | Msa0961050:CDS |
AGCTCGAGCCTCGTGTCCAG+GGG | 0.623716 | 6_3:-81645223 | Msa0961050:CDS |
AATATATTGCGTAACAGGAG+AGG | 0.626761 | 6_3:+81646250 | None:intergenic |
GGATTGAAACAACGGACATG+AGG | 0.632408 | 6_3:-81642011 | Msa0961050:CDS |
CGACCCCATCCAACCAACTG+AGG | 0.632664 | 6_3:-81642641 | Msa0961050:CDS |
AAGGAAAAGTGCAAGACACA+GGG | 0.635168 | 6_3:+81641633 | None:intergenic |
ATATATCAGGATTGAAACAA+CGG | 0.638072 | 6_3:-81642019 | Msa0961050:intron |
GAGACGCTCCAACGTGACCG+TGG | 0.649093 | 6_3:-81647648 | Msa0961050:CDS |
ATTGCGTAACAGGAGAGGAA+AGG | 0.649302 | 6_3:+81646255 | None:intergenic |
ATATGGATCTGAGTGGCAAG+AGG | 0.653218 | 6_3:-81645462 | Msa0961050:CDS |
TCTAAATCTACAGCTTAACA+TGG | 0.653637 | 6_3:-81645492 | Msa0961050:intron |
CGACGAACCAACTGACGACG+AGG | 0.657612 | 6_3:-81642279 | Msa0961050:CDS |
GCCACTCAGTAATGTGACGA+AGG | 0.657970 | 6_3:+81641655 | None:intergenic |
GTGTGTTTAAAGTCAGGACA+TGG | 0.661363 | 6_3:-81646284 | Msa0961050:CDS |
ACGCCGTCGTAACAGAGAGA+AGG | 0.663934 | 6_3:-81647605 | Msa0961050:CDS |
TATCGCCGCTTCGAAATCAA+CGG | 0.664718 | 6_3:-81647407 | Msa0961050:intron |
TAATGTACAAATCCAACCAA+GGG | 0.669573 | 6_3:+81645296 | None:intergenic |
GTAATGTACAAATCCAACCA+AGG | 0.669580 | 6_3:+81645295 | None:intergenic |
ATGTCCTGACTTTAAACACA+CGG | 0.673198 | 6_3:+81646286 | None:intergenic |
CGTCGTCAGTTGGTTCGTCG+GGG | 0.674091 | 6_3:+81642282 | None:intergenic |
ATCAACTTTAGAAGGTGACG+TGG | 0.674095 | 6_3:+81644076 | None:intergenic |
GATGACAACAGTGTTGACTG+AGG | 0.683653 | 6_3:-81645354 | Msa0961050:CDS |
TCCTTCGTCACATTACTGAG+TGG | 0.685721 | 6_3:-81641656 | Msa0961050:three_prime_UTR |
GGTTACCGTTGATTTCGAAG+CGG | 0.709677 | 6_3:+81647402 | None:intergenic |
GATAATCGGGAAAAGAATCG+AGG | 0.710792 | 6_3:+81647426 | None:intergenic |
CCTCTTCTTCCAAAACAAAG+CGG | 0.723548 | 6_3:+81645273 | None:intergenic |
AAGGGCCATATGGATCTGAG+TGG | 0.737924 | 6_3:-81645469 | Msa0961050:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAAATACAATTAAATTAATA+AGG | + | chr6_3:81644425-81644444 | None:intergenic | 10.0% |
!! | ATTCTCAAAATAAAAAATTA+AGG | - | chr6_3:81644773-81644792 | Msa0961050:intron | 10.0% |
!! | ATAAAAAAAACAATAAAGAA+AGG | - | chr6_3:81646016-81646035 | Msa0961050:intron | 10.0% |
!!! | CTTTTTTTTAAAAATTTTGA+AGG | - | chr6_3:81646371-81646390 | Msa0961050:intron | 10.0% |
!!! | TTCTTTTTTTAAAATTTTGA+AGG | - | chr6_3:81646551-81646570 | Msa0961050:intron | 10.0% |
!!! | TTTCTTTTTTAAAATTTTGA+AGG | - | chr6_3:81646904-81646923 | Msa0961050:intron | 10.0% |
!!! | TAGTTTATTTTTATATTAGT+CGG | - | chr6_3:81646959-81646978 | Msa0961050:intron | 10.0% |
!!! | AAATTTGTTTATTGAATTAG+CGG | + | chr6_3:81642540-81642559 | None:intergenic | 15.0% |
!!! | CAATTTATTGATTTTTTTAC+AGG | - | chr6_3:81644142-81644161 | Msa0961050:intron | 15.0% |
!! | AGAATATAGATATATATATG+CGG | + | chr6_3:81644551-81644570 | None:intergenic | 15.0% |
!! | TTCAATTTATAAATCTGTAA+TGG | - | chr6_3:81644668-81644687 | Msa0961050:intron | 15.0% |
!! | TTAAAGTAAGAACAATATTA+TGG | - | chr6_3:81644728-81644747 | Msa0961050:intron | 15.0% |
!! | TTCATAATTCTCATAATATT+TGG | - | chr6_3:81644883-81644902 | Msa0961050:CDS | 15.0% |
!! | ATTATAGATAATCAATCTAA+TGG | + | chr6_3:81645235-81645254 | None:intergenic | 15.0% |
!!! | CAAATTTTTATTTAGATTCA+TGG | - | chr6_3:81645897-81645916 | Msa0961050:intron | 15.0% |
!! | AAGGAAATTAAGATATTTAA+TGG | - | chr6_3:81646035-81646054 | Msa0961050:intron | 15.0% |
!!! | GTTTCTTTTTAAAATTTTGA+AGG | - | chr6_3:81646729-81646748 | Msa0961050:intron | 15.0% |
!!! | TGTTTTAATAAGATATCATG+AGG | - | chr6_3:81641921-81641940 | Msa0961050:intron | 20.0% |
!! | ACTTATTTGAGTCTATATAT+TGG | + | chr6_3:81642035-81642054 | None:intergenic | 20.0% |
!!! | TTTTTCAATTGAGATAATGA+AGG | - | chr6_3:81642301-81642320 | Msa0961050:CDS | 20.0% |
!! | CTTACTACATTATTAATTAC+AGG | - | chr6_3:81642663-81642682 | Msa0961050:CDS | 20.0% |
!! | ATAGTAACCTATAGTTTATA+AGG | - | chr6_3:81642697-81642716 | Msa0961050:intron | 20.0% |
!!! | ATTATAGCCTTATAAACTAT+AGG | + | chr6_3:81642707-81642726 | None:intergenic | 20.0% |
!! | TTAATATTTCAACATAGCTA+TGG | - | chr6_3:81642732-81642751 | Msa0961050:intron | 20.0% |
!!! | TGAATTTTGTTTTTATCATG+AGG | - | chr6_3:81643477-81643496 | Msa0961050:intron | 20.0% |
!!! | GAATTTTGTTTTTATCATGA+GGG | - | chr6_3:81643478-81643497 | Msa0961050:intron | 20.0% |
!! | TGATAGTATAAACAAGTAAA+AGG | + | chr6_3:81643517-81643536 | None:intergenic | 20.0% |
!! | TATCAAAGATCATATTAGAT+GGG | + | chr6_3:81644182-81644201 | None:intergenic | 20.0% |
!! | ATATCAAAGATCATATTAGA+TGG | + | chr6_3:81644183-81644202 | None:intergenic | 20.0% |
!!! | ATTTTTACACTAGTAAACTA+AGG | - | chr6_3:81644278-81644297 | Msa0961050:intron | 20.0% |
!! | AGAGATAAAAAATTCAATGA+TGG | + | chr6_3:81644325-81644344 | None:intergenic | 20.0% |
!! | GTGTAATAGACTTATATATA+AGG | - | chr6_3:81644573-81644592 | Msa0961050:intron | 20.0% |
!! | AGTTTATGAAAGTAGAAAAT+AGG | + | chr6_3:81644848-81644867 | None:intergenic | 20.0% |
!! | GAATTATGAAAGTAGAAAAT+AGG | + | chr6_3:81644873-81644892 | None:intergenic | 20.0% |
!! | GAAAAATCTAGAAAGTTATT+AGG | + | chr6_3:81644940-81644959 | None:intergenic | 20.0% |
!!! | AAATGCCTTTTTTATTAGTT+CGG | - | chr6_3:81645472-81645491 | Msa0961050:CDS | 20.0% |
!!! | ATTTTTCTTCTACTTTTTTG+TGG | - | chr6_3:81645769-81645788 | Msa0961050:intron | 20.0% |
!!! | TTTTTCTTCTACTTTTTTGT+GGG | - | chr6_3:81645770-81645789 | Msa0961050:intron | 20.0% |
!! | TAAAAAAGAAAAGAAAAGTC+TGG | - | chr6_3:81645981-81646000 | Msa0961050:intron | 20.0% |
!! | AAAAAAGAAAAGAAAAGTCT+GGG | - | chr6_3:81645982-81646001 | Msa0961050:intron | 20.0% |
!! | ATAAAATCAAATATACTCAC+AGG | + | chr6_3:81646341-81646360 | None:intergenic | 20.0% |
!!! | TTTTTGTAGTACTTTTTATC+AGG | - | chr6_3:81647021-81647040 | Msa0961050:intron | 20.0% |
!!! | TTTTGTAGTACTTTTTATCA+GGG | - | chr6_3:81647022-81647041 | Msa0961050:intron | 20.0% |
!! | AGATAAAGAATTAGAAACAA+AGG | + | chr6_3:81647077-81647096 | None:intergenic | 20.0% |
!!! | AACTTTTTGGTCATTTTTTA+TGG | - | chr6_3:81647444-81647463 | Msa0961050:CDS | 20.0% |
!! | AAACAAAAAATTGTTTCCTT+GGG | + | chr6_3:81647549-81647568 | None:intergenic | 20.0% |
!! | AAAACAAAAAATTGTTTCCT+TGG | + | chr6_3:81647550-81647569 | None:intergenic | 20.0% |
! | TAACTTATAAGCTAACTGAT+AGG | - | chr6_3:81642107-81642126 | Msa0961050:intron | 25.0% |
! | AACTTATAAGCTAACTGATA+GGG | - | chr6_3:81642108-81642127 | Msa0961050:intron | 25.0% |
!! | CTTATTGAATTTGAAGTGTT+TGG | - | chr6_3:81642160-81642179 | Msa0961050:intron | 25.0% |
! | TAATGTAGTAAGTAGAAGTT+GGG | + | chr6_3:81642655-81642674 | None:intergenic | 25.0% |
! | ATAATGTAGTAAGTAGAAGT+TGG | + | chr6_3:81642656-81642675 | None:intergenic | 25.0% |
! | ATATATTCAGAGACTTCTTA+AGG | - | chr6_3:81642890-81642909 | Msa0961050:intron | 25.0% |
!! | ACAGTTATATTTGTTGAGTA+TGG | - | chr6_3:81642968-81642987 | Msa0961050:intron | 25.0% |
! | GCAAACACTTGTAATTTAAT+GGG | - | chr6_3:81643155-81643174 | Msa0961050:intron | 25.0% |
! | TAGTATAAACAAGTAAAAGG+TGG | + | chr6_3:81643514-81643533 | None:intergenic | 25.0% |
!! | TGTTAGCTTATTCATTGAAA+TGG | - | chr6_3:81643583-81643602 | Msa0961050:intron | 25.0% |
!! | GTTAGCTTATTCATTGAAAT+GGG | - | chr6_3:81643584-81643603 | Msa0961050:intron | 25.0% |
!! | AAAACAATTAAGCACCTTTT+GGG | + | chr6_3:81643970-81643989 | None:intergenic | 25.0% |
!! | AAAAACAATTAAGCACCTTT+TGG | + | chr6_3:81643971-81643990 | None:intergenic | 25.0% |
! | AGAGAATTATTATGTTGCAA+AGG | - | chr6_3:81644020-81644039 | Msa0961050:intron | 25.0% |
!!! | ACTTTTCTTTTAGAACTACA+TGG | - | chr6_3:81644210-81644229 | Msa0961050:intron | 25.0% |
!!! | CTTTTCTTTTAGAACTACAT+GGG | - | chr6_3:81644211-81644230 | Msa0961050:intron | 25.0% |
!!! | ATATTTTCTGGAATGCATTA+AGG | + | chr6_3:81644450-81644469 | None:intergenic | 25.0% |
!! | AAAAGCAGAGAAATATTTTC+TGG | + | chr6_3:81644462-81644481 | None:intergenic | 25.0% |
! | AAAAAATTAAGGATCTTTGC+AGG | - | chr6_3:81644784-81644803 | Msa0961050:intron | 25.0% |
! | ACGAAGACTAAACATAAAAA+GGG | + | chr6_3:81644983-81645002 | None:intergenic | 25.0% |
! | AACGAAGACTAAACATAAAA+AGG | + | chr6_3:81644984-81645003 | None:intergenic | 25.0% |
!! | ATAACACTTACAATTTTGCA+GGG | + | chr6_3:81645090-81645109 | None:intergenic | 25.0% |
!!! | TGAAGCTAAAACTATTTTTG+AGG | - | chr6_3:81645193-81645212 | Msa0961050:CDS | 25.0% |
!! | ACAAAAAATATTAGCCTAGA+TGG | + | chr6_3:81645329-81645348 | None:intergenic | 25.0% |
!!! | AATGCCTTTTTTATTAGTTC+GGG | - | chr6_3:81645473-81645492 | Msa0961050:CDS | 25.0% |
! | TTAATACATCCAAGATATCA+TGG | + | chr6_3:81645527-81645546 | None:intergenic | 25.0% |
!!! | CCTTAAGTATTGATAAAGAA+GGG | + | chr6_3:81645622-81645641 | None:intergenic | 25.0% |
!!! | TCCTTAAGTATTGATAAAGA+AGG | + | chr6_3:81645623-81645642 | None:intergenic | 25.0% |
!! | CTCTACTATCTTTCTTTTAT+TGG | - | chr6_3:81645658-81645677 | Msa0961050:intron | 25.0% |
! | AAAAAGAAAAGAAAAGTCTG+GGG | - | chr6_3:81645983-81646002 | Msa0961050:intron | 25.0% |
! | TTCCTATCAAAATTTATACC+TGG | - | chr6_3:81646156-81646175 | Msa0961050:intron | 25.0% |
! | ATAAAATCAACTATACTCAC+AGG | + | chr6_3:81646703-81646722 | None:intergenic | 25.0% |
! | AATCATGATCTATATCACAA+AGG | + | chr6_3:81646758-81646777 | None:intergenic | 25.0% |
! | ATAAAATCAACTATACTCAC+AGG | + | chr6_3:81646703-81646722 | None:intergenic | 25.0% |
! | AAAAATCAATGCTAACCTTT+CGG | + | chr6_3:81647006-81647025 | None:intergenic | 25.0% |
!!! | TATCTGTTGATTCATATATC+AGG | - | chr6_3:81647092-81647111 | Msa0961050:intron | 25.0% |
! | ATATATCAGGATTGAAACAA+CGG | - | chr6_3:81647105-81647124 | Msa0961050:intron | 25.0% |
!!! | AAAACATGAGAGGTTTTATT+GGG | + | chr6_3:81647386-81647405 | None:intergenic | 25.0% |
! | TGAATGAGGAAAAAGTTTTG+AGG | + | chr6_3:81641575-81641594 | None:intergenic | 30.0% |
CAAATCAGCTTATAGCATAA+AGG | - | chr6_3:81641671-81641690 | Msa0961050:three_prime_UTR | 30.0% | |
GCATTTAACAAACTCAAAAG+CGG | + | chr6_3:81641746-81641765 | None:intergenic | 30.0% | |
!!! | GATAAACAGCTTATTTTGCA+CGG | - | chr6_3:81641794-81641813 | Msa0961050:intron | 30.0% |
ATGAGGAGCTTATGAAAATA+AGG | - | chr6_3:81641938-81641957 | Msa0961050:intron | 30.0% | |
ACTTATAAGCTAACTGATAG+GGG | - | chr6_3:81642109-81642128 | Msa0961050:intron | 30.0% | |
TTTGTATAACTCTCTGGTAA+TGG | + | chr6_3:81642417-81642436 | None:intergenic | 30.0% | |
TGTAAGTTTGTATAACTCTC+TGG | + | chr6_3:81642423-81642442 | None:intergenic | 30.0% | |
!! | AATTAGACACTCGTCATTTT+AGG | + | chr6_3:81642496-81642515 | None:intergenic | 30.0% |
! | TTGGGTGTAGCTTAATTTTT+GGG | + | chr6_3:81642637-81642656 | None:intergenic | 30.0% |
GTAAAACTTAGGCATATTGA+AGG | + | chr6_3:81642801-81642820 | None:intergenic | 30.0% | |
CTGGAAATAAGGTAAAACTT+AGG | + | chr6_3:81642812-81642831 | None:intergenic | 30.0% | |
!! | CTAAGTTTTACCTTATTTCC+AGG | - | chr6_3:81642810-81642829 | Msa0961050:CDS | 30.0% |
TTGAGTATGGCTCAAATTAA+CGG | - | chr6_3:81642981-81643000 | Msa0961050:intron | 30.0% | |
GGCAAACACTTGTAATTTAA+TGG | - | chr6_3:81643154-81643173 | Msa0961050:intron | 30.0% | |
AACACTTGTAATTTAATGGG+TGG | - | chr6_3:81643158-81643177 | Msa0961050:intron | 30.0% | |
TTCCAATAATGTAATGCTAG+AGG | + | chr6_3:81643212-81643231 | None:intergenic | 30.0% | |
TTTATCTGTTTGTGTAGAGT+TGG | - | chr6_3:81643309-81643328 | Msa0961050:intron | 30.0% | |
TTATCTGTTTGTGTAGAGTT+GGG | - | chr6_3:81643310-81643329 | Msa0961050:intron | 30.0% | |
TAGGACAATCATGAACAATA+GGG | + | chr6_3:81643379-81643398 | None:intergenic | 30.0% | |
ATAGGACAATCATGAACAAT+AGG | + | chr6_3:81643380-81643399 | None:intergenic | 30.0% | |
TTGTTCATGATTGTCCTATT+TGG | - | chr6_3:81643381-81643400 | Msa0961050:intron | 30.0% | |
! | TTACACTGAAGGTGAATTTT+TGG | + | chr6_3:81643420-81643439 | None:intergenic | 30.0% |
TTCAATGAATAAGCTAACAC+AGG | + | chr6_3:81643582-81643601 | None:intergenic | 30.0% | |
TCTAAATCTACAGCTTAACA+TGG | - | chr6_3:81643632-81643651 | Msa0961050:intron | 30.0% | |
TAATGTACAAATCCAACCAA+GGG | + | chr6_3:81643831-81643850 | None:intergenic | 30.0% | |
AGTTCATACACATAAAGTAC+TGG | + | chr6_3:81643879-81643898 | None:intergenic | 30.0% | |
CATGTCAAGTTTGATATGAA+TGG | - | chr6_3:81644356-81644375 | Msa0961050:intron | 30.0% | |
TCAAGTTTGATATGAATGGA+AGG | - | chr6_3:81644360-81644379 | Msa0961050:intron | 30.0% | |
CAAGTTTGATATGAATGGAA+GGG | - | chr6_3:81644361-81644380 | Msa0961050:intron | 30.0% | |
TCTTCTTGTAGACATATATG+TGG | + | chr6_3:81644502-81644521 | None:intergenic | 30.0% | |
! | TCTGTAATGGTAATGTTAGT+TGG | - | chr6_3:81644681-81644700 | Msa0961050:intron | 30.0% |
!!! | ATAATATTTGGTTTTAGCCC+AGG | - | chr6_3:81644895-81644914 | Msa0961050:CDS | 30.0% |
GATATCTTGATAGATAACCT+GGG | + | chr6_3:81644915-81644934 | None:intergenic | 30.0% | |
TGATATCTTGATAGATAACC+TGG | + | chr6_3:81644916-81644935 | None:intergenic | 30.0% | |
AGACTAAACATAAAAAGGGA+GGG | + | chr6_3:81644979-81644998 | None:intergenic | 30.0% | |
AAGACTAAACATAAAAAGGG+AGG | + | chr6_3:81644980-81644999 | None:intergenic | 30.0% | |
!! | TTTAGTCTTCGTTTTGTTGA+CGG | - | chr6_3:81644991-81645010 | Msa0961050:intron | 30.0% |
! | TAACACTTACAATTTTGCAG+GGG | + | chr6_3:81645089-81645108 | None:intergenic | 30.0% |
! | CATAACACTTACAATTTTGC+AGG | + | chr6_3:81645091-81645110 | None:intergenic | 30.0% |
! | TCAAAGGGGAATATGTTTTA+TGG | + | chr6_3:81645292-81645311 | None:intergenic | 30.0% |
! | TACGTTTTTCTTACTCTAGA+CGG | - | chr6_3:81645372-81645391 | Msa0961050:CDS | 30.0% |
ATCCAACAGTTATAGATCAA+TGG | + | chr6_3:81645581-81645600 | None:intergenic | 30.0% | |
CCCTTCTTTATCAATACTTA+AGG | - | chr6_3:81645619-81645638 | Msa0961050:intron | 30.0% | |
!! | CACCAGGTATAAATTTTGAT+AGG | + | chr6_3:81646161-81646180 | None:intergenic | 30.0% |
CTATCAAAATTTATACCTGG+TGG | - | chr6_3:81646159-81646178 | Msa0961050:intron | 30.0% | |
CTCGACTTTCAACTTAAATT+TGG | - | chr6_3:81646190-81646209 | Msa0961050:intron | 30.0% | |
GCATGATCTATATCACAAAA+AGG | + | chr6_3:81646400-81646419 | None:intergenic | 30.0% | |
GCATGATCTATATCACAAAA+AGG | + | chr6_3:81646400-81646419 | None:intergenic | 30.0% | |
!! | AGTACTTTTTATCAGGGTAT+AGG | - | chr6_3:81647028-81647047 | Msa0961050:intron | 30.0% |
TAAGCCAATAGGATGTATTT+CGG | - | chr6_3:81647139-81647158 | Msa0961050:intron | 30.0% | |
AATTCCGAAATACATCCTAT+TGG | + | chr6_3:81647146-81647165 | None:intergenic | 30.0% | |
AATGTGATTAATGCTTGTGT+TGG | + | chr6_3:81647224-81647243 | None:intergenic | 30.0% | |
!! | CAAAACATGAGAGGTTTTAT+TGG | + | chr6_3:81647387-81647406 | None:intergenic | 30.0% |
! | TCCTTTACATCTGGTTATTT+TGG | - | chr6_3:81647509-81647528 | Msa0961050:intron | 30.0% |
TCCAAAATAACCAGATGTAA+AGG | + | chr6_3:81647513-81647532 | None:intergenic | 30.0% | |
TATAGTATGTTTGATATCGC+AGG | - | chr6_3:81647571-81647590 | Msa0961050:intron | 30.0% | |
ATAGTATGTTTGATATCGCA+GGG | - | chr6_3:81647572-81647591 | Msa0961050:intron | 30.0% | |
TTCAAAAACACTCGTGAATG+AGG | + | chr6_3:81641589-81641608 | None:intergenic | 35.0% | |
TTACGCATTAAGTGTCTGTT+TGG | - | chr6_3:81641772-81641791 | Msa0961050:intron | 35.0% | |
AGGAGCTTATGAAAATAAGG+TGG | - | chr6_3:81641941-81641960 | Msa0961050:three_prime_UTR | 35.0% | |
CCAAACAATAACGAAGTCTT+CGG | + | chr6_3:81642072-81642091 | None:intergenic | 35.0% | |
! | ACCAAACTGCTATCTTTTGA+CGG | + | chr6_3:81642459-81642478 | None:intergenic | 35.0% |
! | TGGGTGTAGCTTAATTTTTG+GGG | + | chr6_3:81642636-81642655 | None:intergenic | 35.0% |
! | GTTGGGTGTAGCTTAATTTT+TGG | + | chr6_3:81642638-81642657 | None:intergenic | 35.0% |
ATGTCCTGACTTTAAACACA+CGG | + | chr6_3:81642841-81642860 | None:intergenic | 35.0% | |
AATATATTGCGTAACAGGAG+AGG | + | chr6_3:81642877-81642896 | None:intergenic | 35.0% | |
CTCTGAATATATTGCGTAAC+AGG | + | chr6_3:81642882-81642901 | None:intergenic | 35.0% | |
! | GCTCAAATTAACGGATAAGT+GGG | - | chr6_3:81642990-81643009 | Msa0961050:intron | 35.0% |
TTGAGCATGGATCATTCATA+GGG | - | chr6_3:81643076-81643095 | Msa0961050:intron | 35.0% | |
TCATAGGGTTATGACTATGA+CGG | - | chr6_3:81643091-81643110 | Msa0961050:intron | 35.0% | |
AGCCTCTAGCATTACATTAT+TGG | - | chr6_3:81643207-81643226 | Msa0961050:intron | 35.0% | |
TCTTCTTTCTCTTACACTGA+AGG | + | chr6_3:81643431-81643450 | None:intergenic | 35.0% | |
AGCTTATTCATTGAAATGGG+CGG | - | chr6_3:81643587-81643606 | Msa0961050:intron | 35.0% | |
AATCTACAGCTTAACATGGA+AGG | - | chr6_3:81643636-81643655 | Msa0961050:intron | 35.0% | |
ATCTACAGCTTAACATGGAA+GGG | - | chr6_3:81643637-81643656 | Msa0961050:intron | 35.0% | |
ACAAATATATAGCGTGCTTC+AGG | + | chr6_3:81643720-81643739 | None:intergenic | 35.0% | |
ACGCTATATATTTGTGCATG+AGG | - | chr6_3:81643725-81643744 | Msa0961050:intron | 35.0% | |
GTAATGTACAAATCCAACCA+AGG | + | chr6_3:81643832-81643851 | None:intergenic | 35.0% | |
!!! | TGTACATTACCGCTTTGTTT+TGG | - | chr6_3:81643842-81643861 | Msa0961050:intron | 35.0% |
AAGGACACAACTTATAGTCT+AGG | - | chr6_3:81644039-81644058 | Msa0961050:intron | 35.0% | |
GGCTTATACAAAAGCAGTTA+GGG | + | chr6_3:81644404-81644423 | None:intergenic | 35.0% | |
AGGCTTATACAAAAGCAGTT+AGG | + | chr6_3:81644405-81644424 | None:intergenic | 35.0% | |
!! | ATATTTCTCTGCTTTTGAGC+AGG | - | chr6_3:81644466-81644485 | Msa0961050:intron | 35.0% |
TGTAGACATATATGTGGTTC+AGG | + | chr6_3:81644496-81644515 | None:intergenic | 35.0% | |
GACTAAACATAAAAAGGGAG+GGG | + | chr6_3:81644978-81644997 | None:intergenic | 35.0% | |
!! | TTAGTCTTCGTTTTGTTGAC+GGG | - | chr6_3:81644992-81645011 | Msa0961050:intron | 35.0% |
!! | ACCTTCTAAAGTTGATCCAA+TGG | - | chr6_3:81645055-81645074 | Msa0961050:intron | 35.0% |
ACCATTGGATCAACTTTAGA+AGG | + | chr6_3:81645059-81645078 | None:intergenic | 35.0% | |
! | AACACTTACAATTTTGCAGG+GGG | + | chr6_3:81645088-81645107 | None:intergenic | 35.0% |
TTTCTGTTCTCATATGCAGA+TGG | - | chr6_3:81645133-81645152 | Msa0961050:intron | 35.0% | |
! | GTTCCATGTTGTAGTACTTT+TGG | - | chr6_3:81645419-81645438 | Msa0961050:CDS | 35.0% |
!! | TTGCCAAAAGTACTACAACA+TGG | + | chr6_3:81645425-81645444 | None:intergenic | 35.0% |
!!! | CCTTTTTTATTAGTTCGGGT+CGG | - | chr6_3:81645477-81645496 | Msa0961050:CDS | 35.0% |
CAACCAAAACCATGATATCT+TGG | - | chr6_3:81645515-81645534 | Msa0961050:intron | 35.0% | |
! | CATCCAAGATATCATGGTTT+TGG | + | chr6_3:81645521-81645540 | None:intergenic | 35.0% |
CTCCATTGATCTATAACTGT+TGG | - | chr6_3:81645576-81645595 | Msa0961050:intron | 35.0% | |
TAATCATCAGAGAGAAATCG+CGG | + | chr6_3:81645689-81645708 | None:intergenic | 35.0% | |
CACATTGGACAAGATATGAT+TGG | + | chr6_3:81645717-81645736 | None:intergenic | 35.0% | |
AACCATCATCATGTTCACAT+TGG | + | chr6_3:81645732-81645751 | None:intergenic | 35.0% | |
!!! | TTCTACTTTTTTGTGGGATG+AGG | - | chr6_3:81645776-81645795 | Msa0961050:intron | 35.0% |
TGTTACACACAACTGTTTGT+AGG | - | chr6_3:81645829-81645848 | Msa0961050:intron | 35.0% | |
TGATAGACTTAAATTGCGCA+TGG | + | chr6_3:81646086-81646105 | None:intergenic | 35.0% | |
GTCTATCATATCTACAGAGA+AGG | - | chr6_3:81646098-81646117 | Msa0961050:intron | 35.0% | |
! | AAGGTGTTTCTTGTGTAGAT+AGG | - | chr6_3:81646117-81646136 | Msa0961050:intron | 35.0% |
TGTTTCTTGTGTAGATAGGA+TGG | - | chr6_3:81646121-81646140 | Msa0961050:intron | 35.0% | |
! | CAATTTTCACAACCTCTCAT+AGG | - | chr6_3:81646247-81646266 | Msa0961050:CDS | 35.0% |
! | CAATTTTCACAACCTCTCAT+AGG | - | chr6_3:81646247-81646266 | Msa0961050:CDS | 35.0% |
! | CAATTTTCACAACCTCTCAT+AGG | - | chr6_3:81646247-81646266 | Msa0961050:CDS | 35.0% |
TTTATCAGGGTATAGGATTG+AGG | - | chr6_3:81647035-81647054 | Msa0961050:intron | 35.0% | |
TTATCAGGGTATAGGATTGA+GGG | - | chr6_3:81647036-81647055 | Msa0961050:intron | 35.0% | |
TTAGCTTAAGAGCTCTATTC+AGG | + | chr6_3:81647169-81647188 | None:intergenic | 35.0% | |
! | AGGAAGAATGCTCAACTTTT+TGG | - | chr6_3:81647431-81647450 | Msa0961050:CDS | 35.0% |
! | TTGCACTTTTCCTTTACATC+TGG | - | chr6_3:81647500-81647519 | Msa0961050:intron | 35.0% |
GGATTTATCTCAAATTCCCA+AGG | - | chr6_3:81647530-81647549 | Msa0961050:intron | 35.0% | |
CTTCTCATGTTAACTGCATT+GGG | - | chr6_3:81647643-81647662 | Msa0961050:CDS | 35.0% | |
TAACCTTCTCTCTGTTACGA+CGG | + | chr6_3:81641525-81641544 | None:intergenic | 40.0% | |
GATAATCGGGAAAAGAATCG+AGG | + | chr6_3:81641701-81641720 | None:intergenic | 40.0% | |
CCGAAGACTTCGTTATTGTT+TGG | - | chr6_3:81642069-81642088 | Msa0961050:intron | 40.0% | |
TCCGTCAAAAGATAGCAGTT+TGG | - | chr6_3:81642455-81642474 | Msa0961050:CDS | 40.0% | |
! | GTGTGTTTAAAGTCAGGACA+TGG | - | chr6_3:81642840-81642859 | Msa0961050:CDS | 40.0% |
! | GGCTCAAATTAACGGATAAG+TGG | - | chr6_3:81642989-81643008 | Msa0961050:intron | 40.0% |
GTTGAGCATGGATCATTCAT+AGG | - | chr6_3:81643075-81643094 | Msa0961050:intron | 40.0% | |
AATACCCCATGGTACAGTTT+AGG | - | chr6_3:81643131-81643150 | Msa0961050:intron | 40.0% | |
ATACCCCATGGTACAGTTTA+GGG | - | chr6_3:81643132-81643151 | Msa0961050:intron | 40.0% | |
! | GAGAAGAGCACAAACCAAAT+AGG | + | chr6_3:81643398-81643417 | None:intergenic | 40.0% |
TACCGCGAACATAAAAAAGG+GGG | + | chr6_3:81643557-81643576 | None:intergenic | 40.0% | |
CTACCGCGAACATAAAAAAG+GGG | + | chr6_3:81643558-81643577 | None:intergenic | 40.0% | |
CCTACCGCGAACATAAAAAA+GGG | + | chr6_3:81643559-81643578 | None:intergenic | 40.0% | |
GCTTATTCATTGAAATGGGC+GGG | - | chr6_3:81643588-81643607 | Msa0961050:intron | 40.0% | |
AAAGGTGAAGCGTAGAGAAA+TGG | - | chr6_3:81643689-81643708 | Msa0961050:intron | 40.0% | |
! | TCTTCTTGACGACTAGTTGA+AGG | + | chr6_3:81643801-81643820 | None:intergenic | 40.0% |
ACTAGTCGTCAAGAAGATAG+TGG | - | chr6_3:81643804-81643823 | Msa0961050:intron | 40.0% | |
CCTCTTCTTCCAAAACAAAG+CGG | + | chr6_3:81643854-81643873 | None:intergenic | 40.0% | |
AGGATTGGGAAAGCTTCTAA+TGG | - | chr6_3:81643926-81643945 | Msa0961050:intron | 40.0% | |
TATTGAGCTTATCGCCCAAA+AGG | - | chr6_3:81643953-81643972 | Msa0961050:CDS | 40.0% | |
TGTCGTGCTAACTGTTCAAA+GGG | - | chr6_3:81644237-81644256 | Msa0961050:intron | 40.0% | |
CAAATAACCACGTGATGCTA+GGG | + | chr6_3:81644608-81644627 | None:intergenic | 40.0% | |
TAACAGTGATTGACATGTCG+AGG | + | chr6_3:81644638-81644657 | None:intergenic | 40.0% | |
! | ATCAACTTTAGAAGGTGACG+TGG | + | chr6_3:81645051-81645070 | None:intergenic | 40.0% |
! | ACACTTACAATTTTGCAGGG+GGG | + | chr6_3:81645087-81645106 | None:intergenic | 40.0% |
TCAACACAGATAGCTCAAAG+GGG | + | chr6_3:81645306-81645325 | None:intergenic | 40.0% | |
GTCAACACAGATAGCTCAAA+GGG | + | chr6_3:81645307-81645326 | None:intergenic | 40.0% | |
CCGACCCGAACTAATAAAAA+AGG | + | chr6_3:81645480-81645499 | None:intergenic | 40.0% | |
AAGAAGGGTCAACAAGAATG+CGG | + | chr6_3:81645607-81645626 | None:intergenic | 40.0% | |
GAAAGATAGTAGAGTTTGCG+AGG | + | chr6_3:81645652-81645671 | None:intergenic | 40.0% | |
GTCCAATGTGAACATGATGA+TGG | - | chr6_3:81645727-81645746 | Msa0961050:intron | 40.0% | |
CAGTTGTGTGTAACAATCAG+AGG | + | chr6_3:81645824-81645843 | None:intergenic | 40.0% | |
ATAGATATCACACCAGATCG+TGG | - | chr6_3:81645922-81645941 | Msa0961050:intron | 40.0% | |
TAGACTTAAATTGCGCATGG+AGG | + | chr6_3:81646083-81646102 | None:intergenic | 40.0% | |
! | TCATGCTCAGTTGATTGGTT+GGG | + | chr6_3:81646308-81646327 | None:intergenic | 40.0% |
! | CAATTTTCACAACCTCTCGT+AGG | - | chr6_3:81646609-81646628 | Msa0961050:intron | 40.0% |
ACATGAGGAAGTAAGCCAAT+AGG | - | chr6_3:81647128-81647147 | Msa0961050:intron | 40.0% | |
AACCGATGAATGAGAGATAG+CGG | + | chr6_3:81647360-81647379 | None:intergenic | 40.0% | |
!!! | ACCTCTCATGTTTTGTTTGC+AGG | - | chr6_3:81647392-81647411 | Msa0961050:intron | 40.0% |
TCCTGCAAACAAAACATGAG+AGG | + | chr6_3:81647396-81647415 | None:intergenic | 40.0% | |
TTGCAGGATAGTGAATGAGT+TGG | - | chr6_3:81647408-81647427 | Msa0961050:CDS | 40.0% | |
! | AAGGAAAAGTGCAAGACACA+GGG | + | chr6_3:81647494-81647513 | None:intergenic | 40.0% |
! | AAAGGAAAAGTGCAAGACAC+AGG | + | chr6_3:81647495-81647514 | None:intergenic | 40.0% |
GCTTCTCATGTTAACTGCAT+TGG | - | chr6_3:81647642-81647661 | Msa0961050:CDS | 40.0% | |
!! | TGTGTGTTGCATTGGTTCCA+CGG | + | chr6_3:81641496-81641515 | None:intergenic | 45.0% |
! | ACAAAACCGTTCCGTTTTGC+AGG | - | chr6_3:81641614-81641633 | Msa0961050:three_prime_UTR | 45.0% |
CTTTGCGAGTACCTGCAAAA+CGG | + | chr6_3:81641628-81641647 | None:intergenic | 45.0% | |
ATTTCGAAGCGGCGATAATC+GGG | + | chr6_3:81641714-81641733 | None:intergenic | 45.0% | |
GATTTCGAAGCGGCGATAAT+CGG | + | chr6_3:81641715-81641734 | None:intergenic | 45.0% | |
TATCGCCGCTTCGAAATCAA+CGG | - | chr6_3:81641717-81641736 | Msa0961050:intron | 45.0% | |
!! | GGTTACCGTTGATTTCGAAG+CGG | + | chr6_3:81641725-81641744 | None:intergenic | 45.0% |
ACGAAGTCTTCGGACATGTT+TGG | + | chr6_3:81642062-81642081 | None:intergenic | 45.0% | |
!! | TCGTCATTTTAGGCTCTGGT+TGG | + | chr6_3:81642486-81642505 | None:intergenic | 45.0% |
!! | ACACTCGTCATTTTAGGCTC+TGG | + | chr6_3:81642490-81642509 | None:intergenic | 45.0% |
TTTAAACACACGGAGAGACC+TGG | + | chr6_3:81642831-81642850 | None:intergenic | 45.0% | |
! | CTCTCCGTGTGTTTAAAGTC+AGG | - | chr6_3:81642834-81642853 | Msa0961050:CDS | 45.0% |
ATTGCGTAACAGGAGAGGAA+AGG | + | chr6_3:81642872-81642891 | None:intergenic | 45.0% | |
TACCCCATGGTACAGTTTAG+GGG | - | chr6_3:81643133-81643152 | Msa0961050:intron | 45.0% | |
TTGCCCCTAAACTGTACCAT+GGG | + | chr6_3:81643139-81643158 | None:intergenic | 45.0% | |
TTTGCCCCTAAACTGTACCA+TGG | + | chr6_3:81643140-81643159 | None:intergenic | 45.0% | |
! | CGTTCTGTTGTCTGAGATGT+AGG | - | chr6_3:81643244-81643263 | Msa0961050:intron | 45.0% |
! | GTCTGAGATGTAGGCACAAT+TGG | - | chr6_3:81643253-81643272 | Msa0961050:intron | 45.0% |
ACGCAGACAAGAACAGACAA+TGG | + | chr6_3:81643286-81643305 | None:intergenic | 45.0% | |
CTCGTGACTCATGACTATAC+AGG | + | chr6_3:81643339-81643358 | None:intergenic | 45.0% | |
TTTATCATGAGGGCGAGCAT+TGG | - | chr6_3:81643488-81643507 | Msa0961050:intron | 45.0% | |
!!! | GTCCCCCTTTTTTATGTTCG+CGG | - | chr6_3:81643552-81643571 | Msa0961050:intron | 45.0% |
!!! | CCCTTTTTTATGTTCGCGGT+AGG | - | chr6_3:81643556-81643575 | Msa0961050:intron | 45.0% |
GCCTACCGCGAACATAAAAA+AGG | + | chr6_3:81643560-81643579 | None:intergenic | 45.0% | |
CTTAACATGGAAGGGCCATA+TGG | - | chr6_3:81643645-81643664 | Msa0961050:intron | 45.0% | |
TCTTGCCACTCAGATCCATA+TGG | + | chr6_3:81643663-81643682 | None:intergenic | 45.0% | |
ATATGGATCTGAGTGGCAAG+AGG | - | chr6_3:81643662-81643681 | Msa0961050:intron | 45.0% | |
TGAGTGGCAAGAGGAAGAAA+AGG | - | chr6_3:81643671-81643690 | Msa0961050:intron | 45.0% | |
!! | GATGACAACAGTGTTGACTG+AGG | - | chr6_3:81643770-81643789 | Msa0961050:intron | 45.0% |
! | TCAAGAAGATAGTGGTCCCT+TGG | - | chr6_3:81643812-81643831 | Msa0961050:intron | 45.0% |
!!! | CCGCTTTGTTTTGGAAGAAG+AGG | - | chr6_3:81643851-81643870 | Msa0961050:intron | 45.0% |
CTGTCGTGCTAACTGTTCAA+AGG | - | chr6_3:81644236-81644255 | Msa0961050:intron | 45.0% | |
ATGTTTACCCTAGCATCACG+TGG | - | chr6_3:81644598-81644617 | Msa0961050:intron | 45.0% | |
GCAAATAACCACGTGATGCT+AGG | + | chr6_3:81644609-81644628 | None:intergenic | 45.0% | |
CAATCTAATGGTGCAGTGAG+TGG | + | chr6_3:81645223-81645242 | None:intergenic | 45.0% | |
GGTCAACACAGATAGCTCAA+AGG | + | chr6_3:81645308-81645327 | None:intergenic | 45.0% | |
! | GCTATCTGTGTTGACCATCT+AGG | - | chr6_3:81645312-81645331 | Msa0961050:CDS | 45.0% |
AAAACAGTTACGCCACGATC+TGG | + | chr6_3:81645937-81645956 | None:intergenic | 45.0% | |
AAAGAAAAGTCTGGGGACTC+AGG | - | chr6_3:81645990-81646009 | Msa0961050:intron | 45.0% | |
AGTCGAGATAGAATTCCACC+AGG | + | chr6_3:81646177-81646196 | None:intergenic | 45.0% | |
TCACAACCTCTCATAGGACA+CGG | - | chr6_3:81646253-81646272 | Msa0961050:CDS | 45.0% | |
! | CATGCTCAGTTGATTGGTTG+GGG | + | chr6_3:81646307-81646326 | None:intergenic | 45.0% |
CTCATGCTCAGTTGATTGGT+TGG | + | chr6_3:81646309-81646328 | None:intergenic | 45.0% | |
CAACCAATCAACTGAGCATG+AGG | - | chr6_3:81646307-81646326 | Msa0961050:intron | 45.0% | |
CCTCTCATAGGACATGACTT+CGG | - | chr6_3:81646441-81646460 | Msa0961050:intron | 45.0% | |
CTCTCATAGGACATGACTTC+GGG | - | chr6_3:81646442-81646461 | Msa0961050:intron | 45.0% | |
TCACAACCTCTCATAGGACA+CGG | - | chr6_3:81646253-81646272 | Msa0961050:CDS | 45.0% | |
!!! | TCTGGCGTTGATACTTTTCC+AGG | - | chr6_3:81646278-81646297 | Msa0961050:CDS | 45.0% |
CAATGCTAACCTTTCGGCAT+CGG | + | chr6_3:81647000-81647019 | None:intergenic | 45.0% | |
GGATTGAAACAACGGACATG+AGG | - | chr6_3:81647113-81647132 | Msa0961050:intron | 45.0% | |
GCTAATGATGTCGTTGCTGA+AGG | - | chr6_3:81647184-81647203 | Msa0961050:intron | 45.0% | |
CACCGCTATCTCTCATTCAT+CGG | - | chr6_3:81647355-81647374 | Msa0961050:intron | 45.0% | |
! | CAGGATAGTGAATGAGTTGG+AGG | - | chr6_3:81647411-81647430 | Msa0961050:CDS | 45.0% |
TCCTTCGTCACATTACTGAG+TGG | - | chr6_3:81647468-81647487 | Msa0961050:CDS | 45.0% | |
!!! | CAGTTTTAGCTCGAACTTGC+AGG | + | chr6_3:81647613-81647632 | None:intergenic | 45.0% |
GGCGTTGTTGTGTGTTGCAT+TGG | + | chr6_3:81641504-81641523 | None:intergenic | 50.0% | |
CGAGTACCTGCAAAACGGAA+CGG | + | chr6_3:81641623-81641642 | None:intergenic | 50.0% | |
CACGGAGAGACCTGGAAATA+AGG | + | chr6_3:81642823-81642842 | None:intergenic | 50.0% | |
AGACGCTTGAGCATAGTGAG+TGG | - | chr6_3:81643014-81643033 | Msa0961050:intron | 50.0% | |
! | GATCTGAAAGTGCAACGTCG+CGG | - | chr6_3:81643036-81643055 | Msa0961050:intron | 50.0% |
AGAGGTCATGACGTTGAGCA+TGG | - | chr6_3:81643063-81643082 | Msa0961050:intron | 50.0% | |
GACTATGACGGTTGCAAGTG+TGG | - | chr6_3:81643103-81643122 | Msa0961050:intron | 50.0% | |
TATGACGGTTGCAAGTGTGG+CGG | - | chr6_3:81643106-81643125 | Msa0961050:intron | 50.0% | |
TGCCCCTAAACTGTACCATG+GGG | + | chr6_3:81643138-81643157 | None:intergenic | 50.0% | |
AAGGGCCATATGGATCTGAG+TGG | - | chr6_3:81643655-81643674 | Msa0961050:intron | 50.0% | |
! | GAAGATAGTGGTCCCTTGGT+TGG | - | chr6_3:81643816-81643835 | Msa0961050:intron | 50.0% |
! | CTCAGTTGATTGGTTGGGGT+CGG | + | chr6_3:81646303-81646322 | None:intergenic | 50.0% |
CAGCCTCATGCTCAGTTGAT+TGG | + | chr6_3:81646313-81646332 | None:intergenic | 50.0% | |
CCGAAGTCATGTCCTATGAG+AGG | + | chr6_3:81646444-81646463 | None:intergenic | 50.0% | |
TCGTCCTCAGTTGGTTGGAT+GGG | + | chr6_3:81646490-81646509 | None:intergenic | 50.0% | |
ATTTCAGCCTCGTCCTCAGT+TGG | + | chr6_3:81646499-81646518 | None:intergenic | 50.0% | |
TCACAACCTCTCGTAGGACA+TGG | - | chr6_3:81646615-81646634 | Msa0961050:intron | 50.0% | |
! | CTCAGTTGGTTGGATGGGTT+CGG | + | chr6_3:81646665-81646684 | None:intergenic | 50.0% |
GAACCCATCCAACCAACTGA+GGG | - | chr6_3:81646664-81646683 | Msa0961050:intron | 50.0% | |
ATTTCAGCCTCGTCGTCAGT+TGG | + | chr6_3:81646855-81646874 | None:intergenic | 50.0% | |
GCCACTCAGTAATGTGACGA+AGG | + | chr6_3:81647472-81647491 | None:intergenic | 50.0% | |
AGCTCGAACTTGCAGGAGTT+AGG | + | chr6_3:81647606-81647625 | None:intergenic | 50.0% | |
AGCGTCTCCGAGTTCATTGC+TGG | + | chr6_3:81641464-81641483 | None:intergenic | 55.0% | |
!! | CATTGGTTCCACGGTCACGT+TGG | + | chr6_3:81641487-81641506 | None:intergenic | 55.0% |
ACGCCGTCGTAACAGAGAGA+AGG | - | chr6_3:81641519-81641538 | Msa0961050:three_prime_UTR | 55.0% | |
AATCCTTTCCCCTGGACACG+AGG | + | chr6_3:81643912-81643931 | None:intergenic | 55.0% | |
TCGTGTCCAGGGGAAAGGAT+TGG | - | chr6_3:81643911-81643930 | Msa0961050:intron | 55.0% | |
CGTGTCCAGGGGAAAGGATT+GGG | - | chr6_3:81643912-81643931 | Msa0961050:intron | 55.0% | |
GCTTTCCCAATCCTTTCCCC+TGG | + | chr6_3:81643920-81643939 | None:intergenic | 55.0% | |
! | TGCAGGGGGGTACATACCAT+TGG | + | chr6_3:81645074-81645093 | None:intergenic | 55.0% |
CAGAAGCCGTGTCCTATGAG+AGG | + | chr6_3:81646262-81646281 | None:intergenic | 55.0% | |
CTCTCATAGGACACGGCTTC+TGG | - | chr6_3:81646260-81646279 | Msa0961050:CDS | 55.0% | |
CTCAGTTGGTTGGATGGGGT+CGG | + | chr6_3:81646485-81646504 | None:intergenic | 55.0% | |
CGTCCTCAGTTGGTTGGATG+GGG | + | chr6_3:81646489-81646508 | None:intergenic | 55.0% | |
CTCGTCCTCAGTTGGTTGGA+TGG | + | chr6_3:81646491-81646510 | None:intergenic | 55.0% | |
CATCCAACCAACTGAGGACG+AGG | - | chr6_3:81646489-81646508 | Msa0961050:intron | 55.0% | |
CAGAAGCCATGTCCTACGAG+AGG | + | chr6_3:81646624-81646643 | None:intergenic | 55.0% | |
CTCTCGTAGGACATGGCTTC+TGG | - | chr6_3:81646622-81646641 | Msa0961050:intron | 55.0% | |
CGAACCCATCCAACCAACTG+AGG | - | chr6_3:81646663-81646682 | Msa0961050:intron | 55.0% | |
TCGCCCTCAGTTGGTTGGAT+GGG | + | chr6_3:81646670-81646689 | None:intergenic | 55.0% | |
ATTTCAGCCTCGCCCTCAGT+TGG | + | chr6_3:81646679-81646698 | None:intergenic | 55.0% | |
CAGAAGCCGTGTCCTATGAG+AGG | + | chr6_3:81646262-81646281 | None:intergenic | 55.0% | |
CTCTCATAGGACACGGCTTC+TGG | - | chr6_3:81646260-81646279 | Msa0961050:CDS | 55.0% | |
!! | TCGTCGTCAGTTGGTTCGTC+GGG | + | chr6_3:81646846-81646865 | None:intergenic | 55.0% |
!! | CTCGTCGTCAGTTGGTTCGT+CGG | + | chr6_3:81646847-81646866 | None:intergenic | 55.0% |
ACGTTGATGCCGATGCCGAA+AGG | - | chr6_3:81646988-81647007 | Msa0961050:intron | 55.0% | |
! | GTGCAACGTCGCGGATTGAG+AGG | - | chr6_3:81643045-81643064 | Msa0961050:intron | 60.0% |
GTGTGGCGGCAAATACCCCA+TGG | - | chr6_3:81643120-81643139 | Msa0961050:intron | 60.0% | |
! | GTTGATTGGTTGGGGTCGGC+AGG | + | chr6_3:81646299-81646318 | None:intergenic | 60.0% |
GTTGGTTGGATGGGGTCGGA+AGG | + | chr6_3:81646481-81646500 | None:intergenic | 60.0% | |
CGACCCCATCCAACCAACTG+AGG | - | chr6_3:81646483-81646502 | Msa0961050:intron | 60.0% | |
CAGCCTCGTCCTCAGTTGGT+TGG | + | chr6_3:81646495-81646514 | None:intergenic | 60.0% | |
! | GTTGGTTGGATGGGTTCGGC+AGG | + | chr6_3:81646661-81646680 | None:intergenic | 60.0% |
CTCGCCCTCAGTTGGTTGGA+TGG | + | chr6_3:81646671-81646690 | None:intergenic | 60.0% | |
CATCCAACCAACTGAGGGCG+AGG | - | chr6_3:81646669-81646688 | Msa0961050:intron | 60.0% | |
!! | CGTCGTCAGTTGGTTCGTCG+GGG | + | chr6_3:81646845-81646864 | None:intergenic | 60.0% |
CGACGAACCAACTGACGACG+AGG | - | chr6_3:81646845-81646864 | Msa0961050:intron | 60.0% | |
GAGACGCTCCAACGTGACCG+TGG | - | chr6_3:81641476-81641495 | Msa0961050:three_prime_UTR | 65.0% | |
ACAGCTCGAGCCTCGTGTCC+AGG | - | chr6_3:81643899-81643918 | Msa0961050:intron | 65.0% | |
CAGCTCGAGCCTCGTGTCCA+GGG | - | chr6_3:81643900-81643919 | Msa0961050:intron | 65.0% | |
AGCTCGAGCCTCGTGTCCAG+GGG | - | chr6_3:81643901-81643920 | Msa0961050:intron | 65.0% | |
GAGCCTCGTGTCCAGGGGAA+AGG | - | chr6_3:81643906-81643925 | Msa0961050:intron | 65.0% | |
CAGCCTCGCCCTCAGTTGGT+TGG | + | chr6_3:81646675-81646694 | None:intergenic | 65.0% | |
!! | GTTGGTTCGTCGGGGTCACC+TGG | + | chr6_3:81646837-81646856 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 81641455 | 81647691 | 81641455 | ID=Msa0961050;Name=Msa0961050 |
chr6_3 | mRNA | 81641455 | 81647691 | 81641455 | ID=Msa0961050-mRNA-1;Parent=Msa0961050;Name=Msa0961050-mRNA-1;_AED=0.15;_eAED=0.15;_QI=12|1|1|1|0.84|0.92|14|342|377 |
chr6_3 | exon | 81641455 | 81641732 | 81641455 | ID=Msa0961050-mRNA-1:exon:14658;Parent=Msa0961050-mRNA-1 |
chr6_3 | exon | 81641941 | 81642032 | 81641941 | ID=Msa0961050-mRNA-1:exon:14657;Parent=Msa0961050-mRNA-1 |
chr6_3 | exon | 81642137 | 81642168 | 81642137 | ID=Msa0961050-mRNA-1:exon:14656;Parent=Msa0961050-mRNA-1 |
chr6_3 | exon | 81642268 | 81642339 | 81642268 | ID=Msa0961050-mRNA-1:exon:14655;Parent=Msa0961050-mRNA-1 |
chr6_3 | exon | 81642444 | 81642515 | 81642444 | ID=Msa0961050-mRNA-1:exon:14654;Parent=Msa0961050-mRNA-1 |
chr6_3 | exon | 81642624 | 81642695 | 81642624 | ID=Msa0961050-mRNA-1:exon:14653;Parent=Msa0961050-mRNA-1 |
chr6_3 | exon | 81642806 | 81642877 | 81642806 | ID=Msa0961050-mRNA-1:exon:14652;Parent=Msa0961050-mRNA-1 |
chr6_3 | exon | 81643932 | 81643994 | 81643932 | ID=Msa0961050-mRNA-1:exon:14651;Parent=Msa0961050-mRNA-1 |
chr6_3 | exon | 81644070 | 81644112 | 81644070 | ID=Msa0961050-mRNA-1:exon:14650;Parent=Msa0961050-mRNA-1 |
chr6_3 | exon | 81644847 | 81644923 | 81644847 | ID=Msa0961050-mRNA-1:exon:14649;Parent=Msa0961050-mRNA-1 |
chr6_3 | exon | 81645172 | 81645501 | 81645172 | ID=Msa0961050-mRNA-1:exon:14648;Parent=Msa0961050-mRNA-1 |
chr6_3 | exon | 81646235 | 81646314 | 81646235 | ID=Msa0961050-mRNA-1:exon:14647;Parent=Msa0961050-mRNA-1 |
chr6_3 | exon | 81647408 | 81647510 | 81647408 | ID=Msa0961050-mRNA-1:exon:14646;Parent=Msa0961050-mRNA-1 |
chr6_3 | exon | 81647590 | 81647691 | 81647590 | ID=Msa0961050-mRNA-1:exon:14645;Parent=Msa0961050-mRNA-1 |
chr6_3 | five_prime_UTR | 81647680 | 81647691 | 81647680 | ID=Msa0961050-mRNA-1:five_prime_utr;Parent=Msa0961050-mRNA-1 |
chr6_3 | CDS | 81647590 | 81647679 | 81647590 | ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1 |
chr6_3 | CDS | 81647408 | 81647510 | 81647408 | ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1 |
chr6_3 | CDS | 81646235 | 81646314 | 81646235 | ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1 |
chr6_3 | CDS | 81645172 | 81645501 | 81645172 | ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1 |
chr6_3 | CDS | 81644847 | 81644923 | 81644847 | ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1 |
chr6_3 | CDS | 81644070 | 81644112 | 81644070 | ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1 |
chr6_3 | CDS | 81643932 | 81643994 | 81643932 | ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1 |
chr6_3 | CDS | 81642806 | 81642877 | 81642806 | ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1 |
chr6_3 | CDS | 81642624 | 81642695 | 81642624 | ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1 |
chr6_3 | CDS | 81642444 | 81642515 | 81642444 | ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1 |
chr6_3 | CDS | 81642268 | 81642339 | 81642268 | ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1 |
chr6_3 | CDS | 81642137 | 81642168 | 81642137 | ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1 |
chr6_3 | CDS | 81642005 | 81642032 | 81642005 | ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1 |
chr6_3 | three_prime_UTR | 81641941 | 81642004 | 81641941 | ID=Msa0961050-mRNA-1:three_prime_utr;Parent=Msa0961050-mRNA-1 |
chr6_3 | three_prime_UTR | 81641455 | 81641732 | 81641455 | ID=Msa0961050-mRNA-1:three_prime_utr;Parent=Msa0961050-mRNA-1 |
Gene Sequence |
Protein sequence |