AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0961050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961050 MtrunA17_Chr6g0479551 88.931 262 23 1 1 262 1 256 1.61e-172 481
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961050 AT1G18335.1 50.943 265 118 4 3 263 6 262 2.76e-78 242
Msa0961050 AT1G18335.3 51.136 264 117 4 3 262 6 261 1.44e-77 240
Msa0961050 AT1G18335.2 51.136 264 117 4 3 262 6 261 1.44e-77 240

Find 117 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTACATCTGGTTATTT+TGG 0.070234 6_3:-81641615 Msa0961050:three_prime_UTR
CTCTCATAGGACACGGCTTC+TGG 0.284691 6_3:-81642326 Msa0961050:intron
CTCTCATAGGACACGGCTTC+TGG 0.284691 6_3:-81642864 Msa0961050:intron
CTCTGAATATATTGCGTAAC+AGG 0.291924 6_3:+81646245 None:intergenic
TTAGCTTAAGAGCTCTATTC+AGG 0.293764 6_3:+81641958 None:intergenic
CTCTCGTAGGACATGGCTTC+TGG 0.304045 6_3:-81642502 Msa0961050:intron
CAGCCTCATGCTCAGTTGAT+TGG 0.328993 6_3:+81642814 None:intergenic
TCATGCTCAGTTGATTGGTT+GGG 0.334696 6_3:+81642819 None:intergenic
GATTTCGAAGCGGCGATAAT+CGG 0.344464 6_3:+81647412 None:intergenic
CTCAGTTGGTTGGATGGGTT+CGG 0.361326 6_3:+81642462 None:intergenic
ACCATTGGATCAACTTTAGA+AGG 0.362053 6_3:+81644068 None:intergenic
CTCGCCCTCAGTTGGTTGGA+TGG 0.379337 6_3:+81642456 None:intergenic
AGCGTCTCCGAGTTCATTGC+TGG 0.379618 6_3:+81647663 None:intergenic
TGTACATTACCGCTTTGTTT+TGG 0.388601 6_3:-81645282 Msa0961050:CDS
TCGTCGTCAGTTGGTTCGTC+GGG 0.389680 6_3:+81642281 None:intergenic
CAAATCAGCTTATAGCATAA+AGG 0.405600 6_3:-81647453 Msa0961050:CDS
CTCATGCTCAGTTGATTGGT+TGG 0.408139 6_3:+81642818 None:intergenic
AATTCCGAAATACATCCTAT+TGG 0.410113 6_3:+81641981 None:intergenic
ATTTCGAAGCGGCGATAATC+GGG 0.416262 6_3:+81647413 None:intergenic
CTCTCATAGGACATGACTTC+GGG 0.417664 6_3:-81642682 Msa0961050:intron
CTCGTCCTCAGTTGGTTGGA+TGG 0.420386 6_3:+81642636 None:intergenic
CTTCTCATGTTAACTGCATT+GGG 0.422239 6_3:-81641481 Msa0961050:three_prime_UTR
TCGTCCTCAGTTGGTTGGAT+GGG 0.424743 6_3:+81642637 None:intergenic
CGTGTCCAGGGGAAAGGATT+GGG 0.426522 6_3:-81645212 Msa0961050:CDS
ATATATTCAGAGACTTCTTA+AGG 0.426624 6_3:-81646234 Msa0961050:intron
TAAGCCAATAGGATGTATTT+CGG 0.427792 6_3:-81641985 Msa0961050:three_prime_UTR
GCTTCTCATGTTAACTGCAT+TGG 0.428232 6_3:-81641482 Msa0961050:three_prime_UTR
ACAGCTCGAGCCTCGTGTCC+AGG 0.444598 6_3:-81645225 Msa0961050:CDS
ACAAATATATAGCGTGCTTC+AGG 0.453405 6_3:+81645407 None:intergenic
AGCTCGAACTTGCAGGAGTT+AGG 0.457690 6_3:+81641521 None:intergenic
TCTTCTTGACGACTAGTTGA+AGG 0.460099 6_3:+81645326 None:intergenic
AAAGGTGAAGCGTAGAGAAA+TGG 0.460189 6_3:-81645435 Msa0961050:CDS
CTCAGTTGATTGGTTGGGGT+CGG 0.462972 6_3:+81642824 None:intergenic
GTTGATTGGTTGGGGTCGGC+AGG 0.463023 6_3:+81642828 None:intergenic
CAGCCTCGTCCTCAGTTGGT+TGG 0.465098 6_3:+81642632 None:intergenic
CTTAACATGGAAGGGCCATA+TGG 0.467460 6_3:-81645479 Msa0961050:CDS
GCTTTCCCAATCCTTTCCCC+TGG 0.468580 6_3:+81645207 None:intergenic
CAGGATAGTGAATGAGTTGG+AGG 0.471220 6_3:-81641713 Msa0961050:three_prime_UTR
CAGCCTCGCCCTCAGTTGGT+TGG 0.474613 6_3:+81642452 None:intergenic
AGGATTGGGAAAGCTTCTAA+TGG 0.474839 6_3:-81645198 Msa0961050:CDS
CTGTCGTGCTAACTGTTCAA+AGG 0.475803 6_3:-81644888 Msa0961050:CDS
TATAGTATGTTTGATATCGC+AGG 0.477265 6_3:-81641553 Msa0961050:three_prime_UTR
GGCGTTGTTGTGTGTTGCAT+TGG 0.479559 6_3:+81647623 None:intergenic
GTTGGTTCGTCGGGGTCACC+TGG 0.481274 6_3:+81642290 None:intergenic
CTCGTCGTCAGTTGGTTCGT+CGG 0.482006 6_3:+81642280 None:intergenic
TCGCCCTCAGTTGGTTGGAT+GGG 0.482404 6_3:+81642457 None:intergenic
TCCAAAATAACCAGATGTAA+AGG 0.486804 6_3:+81641614 None:intergenic
CAGCTCGAGCCTCGTGTCCA+GGG 0.491833 6_3:-81645224 Msa0961050:CDS
GAAGATAGTGGTCCCTTGGT+TGG 0.492453 6_3:-81645308 Msa0961050:CDS
CATGCTCAGTTGATTGGTTG+GGG 0.499435 6_3:+81642820 None:intergenic
TATTGAGCTTATCGCCCAAA+AGG 0.500241 6_3:-81645171 Msa0961050:intron
CAATGCTAACCTTTCGGCAT+CGG 0.501747 6_3:+81642127 None:intergenic
CGTCCTCAGTTGGTTGGATG+GGG 0.507573 6_3:+81642638 None:intergenic
TCTTGCCACTCAGATCCATA+TGG 0.513626 6_3:+81645464 None:intergenic
ACATGAGGAAGTAAGCCAAT+AGG 0.517317 6_3:-81641996 Msa0961050:exon
CTCTCCGTGTGTTTAAAGTC+AGG 0.520731 6_3:-81646290 Msa0961050:CDS
ATTTCAGCCTCGCCCTCAGT+TGG 0.524801 6_3:+81642448 None:intergenic
TCGTGTCCAGGGGAAAGGAT+TGG 0.525244 6_3:-81645213 Msa0961050:CDS
TGAGTGGCAAGAGGAAGAAA+AGG 0.525897 6_3:-81645453 Msa0961050:CDS
ATCTACAGCTTAACATGGAA+GGG 0.529467 6_3:-81645487 Msa0961050:intron
GTTGGTTGGATGGGTTCGGC+AGG 0.532279 6_3:+81642466 None:intergenic
CTCAGTTGGTTGGATGGGGT+CGG 0.532291 6_3:+81642642 None:intergenic
GAGCCTCGTGTCCAGGGGAA+AGG 0.535185 6_3:-81645218 Msa0961050:CDS
CATCCAACCAACTGAGGGCG+AGG 0.539135 6_3:-81642455 Msa0961050:CDS
AATCTACAGCTTAACATGGA+AGG 0.544882 6_3:-81645488 Msa0961050:intron
TGTGTGTTGCATTGGTTCCA+CGG 0.547362 6_3:+81647631 None:intergenic
ATTTCAGCCTCGTCGTCAGT+TGG 0.553072 6_3:+81642272 None:intergenic
CCGAGTTCATTGCTGGTGAG+TGG 0.555140 6_3:+81647670 None:intergenic
ACCTTCTAAAGTTGATCCAA+TGG 0.555355 6_3:-81644069 Msa0961050:intron
GTTGGTTGGATGGGGTCGGA+AGG 0.556428 6_3:+81642646 None:intergenic
TCAAGAAGATAGTGGTCCCT+TGG 0.557490 6_3:-81645312 Msa0961050:CDS
ACGTTGATGCCGATGCCGAA+AGG 0.559474 6_3:-81642136 Msa0961050:intron
ATTTCAGCCTCGTCCTCAGT+TGG 0.560819 6_3:+81642628 None:intergenic
CCTCTCATAGGACATGACTT+CGG 0.565717 6_3:-81642683 Msa0961050:intron
GCTAATGATGTCGTTGCTGA+AGG 0.566188 6_3:-81641940 Msa0961050:intron
GGATTTATCTCAAATTCCCA+AGG 0.569573 6_3:-81641594 Msa0961050:three_prime_UTR
ACGCTATATATTTGTGCATG+AGG 0.569652 6_3:-81645399 Msa0961050:CDS
CATCCAACCAACTGAGGACG+AGG 0.575763 6_3:-81642635 Msa0961050:CDS
TTGCAGGATAGTGAATGAGT+TGG 0.581840 6_3:-81641716 Msa0961050:intron
AGTTCATACACATAAAGTAC+TGG 0.583472 6_3:+81645248 None:intergenic
TGTCGTGCTAACTGTTCAAA+GGG 0.585683 6_3:-81644887 Msa0961050:CDS
TAACCTTCTCTCTGTTACGA+CGG 0.587012 6_3:+81647602 None:intergenic
CCACTCACCAGCAATGAACT+CGG 0.587556 6_3:-81647670 Msa0961050:exon
ACTAGTCGTCAAGAAGATAG+TGG 0.589965 6_3:-81645320 Msa0961050:CDS
AAAGGAAAAGTGCAAGACAC+AGG 0.590134 6_3:+81641632 None:intergenic
CAACCAATCAACTGAGCATG+AGG 0.596952 6_3:-81642817 Msa0961050:CDS
AATCCTTTCCCCTGGACACG+AGG 0.597062 6_3:+81645215 None:intergenic
CATTGGTTCCACGGTCACGT+TGG 0.600954 6_3:+81647640 None:intergenic
ATAGTATGTTTGATATCGCA+GGG 0.610547 6_3:-81641552 Msa0961050:three_prime_UTR
CGAACCCATCCAACCAACTG+AGG 0.610550 6_3:-81642461 Msa0961050:CDS
GAACCCATCCAACCAACTGA+GGG 0.612877 6_3:-81642460 Msa0961050:CDS
AGCTCGAGCCTCGTGTCCAG+GGG 0.623716 6_3:-81645223 Msa0961050:CDS
AATATATTGCGTAACAGGAG+AGG 0.626761 6_3:+81646250 None:intergenic
GGATTGAAACAACGGACATG+AGG 0.632408 6_3:-81642011 Msa0961050:CDS
CGACCCCATCCAACCAACTG+AGG 0.632664 6_3:-81642641 Msa0961050:CDS
AAGGAAAAGTGCAAGACACA+GGG 0.635168 6_3:+81641633 None:intergenic
ATATATCAGGATTGAAACAA+CGG 0.638072 6_3:-81642019 Msa0961050:intron
GAGACGCTCCAACGTGACCG+TGG 0.649093 6_3:-81647648 Msa0961050:CDS
ATTGCGTAACAGGAGAGGAA+AGG 0.649302 6_3:+81646255 None:intergenic
ATATGGATCTGAGTGGCAAG+AGG 0.653218 6_3:-81645462 Msa0961050:CDS
TCTAAATCTACAGCTTAACA+TGG 0.653637 6_3:-81645492 Msa0961050:intron
CGACGAACCAACTGACGACG+AGG 0.657612 6_3:-81642279 Msa0961050:CDS
GCCACTCAGTAATGTGACGA+AGG 0.657970 6_3:+81641655 None:intergenic
GTGTGTTTAAAGTCAGGACA+TGG 0.661363 6_3:-81646284 Msa0961050:CDS
ACGCCGTCGTAACAGAGAGA+AGG 0.663934 6_3:-81647605 Msa0961050:CDS
TATCGCCGCTTCGAAATCAA+CGG 0.664718 6_3:-81647407 Msa0961050:intron
TAATGTACAAATCCAACCAA+GGG 0.669573 6_3:+81645296 None:intergenic
GTAATGTACAAATCCAACCA+AGG 0.669580 6_3:+81645295 None:intergenic
ATGTCCTGACTTTAAACACA+CGG 0.673198 6_3:+81646286 None:intergenic
CGTCGTCAGTTGGTTCGTCG+GGG 0.674091 6_3:+81642282 None:intergenic
ATCAACTTTAGAAGGTGACG+TGG 0.674095 6_3:+81644076 None:intergenic
GATGACAACAGTGTTGACTG+AGG 0.683653 6_3:-81645354 Msa0961050:CDS
TCCTTCGTCACATTACTGAG+TGG 0.685721 6_3:-81641656 Msa0961050:three_prime_UTR
GGTTACCGTTGATTTCGAAG+CGG 0.709677 6_3:+81647402 None:intergenic
GATAATCGGGAAAAGAATCG+AGG 0.710792 6_3:+81647426 None:intergenic
CCTCTTCTTCCAAAACAAAG+CGG 0.723548 6_3:+81645273 None:intergenic
AAGGGCCATATGGATCTGAG+TGG 0.737924 6_3:-81645469 Msa0961050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATACAATTAAATTAATA+AGG + chr6_3:81644425-81644444 None:intergenic 10.0%
!! ATTCTCAAAATAAAAAATTA+AGG - chr6_3:81644773-81644792 Msa0961050:intron 10.0%
!! ATAAAAAAAACAATAAAGAA+AGG - chr6_3:81646016-81646035 Msa0961050:intron 10.0%
!!! CTTTTTTTTAAAAATTTTGA+AGG - chr6_3:81646371-81646390 Msa0961050:intron 10.0%
!!! TTCTTTTTTTAAAATTTTGA+AGG - chr6_3:81646551-81646570 Msa0961050:intron 10.0%
!!! TTTCTTTTTTAAAATTTTGA+AGG - chr6_3:81646904-81646923 Msa0961050:intron 10.0%
!!! TAGTTTATTTTTATATTAGT+CGG - chr6_3:81646959-81646978 Msa0961050:intron 10.0%
!!! AAATTTGTTTATTGAATTAG+CGG + chr6_3:81642540-81642559 None:intergenic 15.0%
!!! CAATTTATTGATTTTTTTAC+AGG - chr6_3:81644142-81644161 Msa0961050:intron 15.0%
!! AGAATATAGATATATATATG+CGG + chr6_3:81644551-81644570 None:intergenic 15.0%
!! TTCAATTTATAAATCTGTAA+TGG - chr6_3:81644668-81644687 Msa0961050:intron 15.0%
!! TTAAAGTAAGAACAATATTA+TGG - chr6_3:81644728-81644747 Msa0961050:intron 15.0%
!! TTCATAATTCTCATAATATT+TGG - chr6_3:81644883-81644902 Msa0961050:CDS 15.0%
!! ATTATAGATAATCAATCTAA+TGG + chr6_3:81645235-81645254 None:intergenic 15.0%
!!! CAAATTTTTATTTAGATTCA+TGG - chr6_3:81645897-81645916 Msa0961050:intron 15.0%
!! AAGGAAATTAAGATATTTAA+TGG - chr6_3:81646035-81646054 Msa0961050:intron 15.0%
!!! GTTTCTTTTTAAAATTTTGA+AGG - chr6_3:81646729-81646748 Msa0961050:intron 15.0%
!!! TGTTTTAATAAGATATCATG+AGG - chr6_3:81641921-81641940 Msa0961050:intron 20.0%
!! ACTTATTTGAGTCTATATAT+TGG + chr6_3:81642035-81642054 None:intergenic 20.0%
!!! TTTTTCAATTGAGATAATGA+AGG - chr6_3:81642301-81642320 Msa0961050:CDS 20.0%
!! CTTACTACATTATTAATTAC+AGG - chr6_3:81642663-81642682 Msa0961050:CDS 20.0%
!! ATAGTAACCTATAGTTTATA+AGG - chr6_3:81642697-81642716 Msa0961050:intron 20.0%
!!! ATTATAGCCTTATAAACTAT+AGG + chr6_3:81642707-81642726 None:intergenic 20.0%
!! TTAATATTTCAACATAGCTA+TGG - chr6_3:81642732-81642751 Msa0961050:intron 20.0%
!!! TGAATTTTGTTTTTATCATG+AGG - chr6_3:81643477-81643496 Msa0961050:intron 20.0%
!!! GAATTTTGTTTTTATCATGA+GGG - chr6_3:81643478-81643497 Msa0961050:intron 20.0%
!! TGATAGTATAAACAAGTAAA+AGG + chr6_3:81643517-81643536 None:intergenic 20.0%
!! TATCAAAGATCATATTAGAT+GGG + chr6_3:81644182-81644201 None:intergenic 20.0%
!! ATATCAAAGATCATATTAGA+TGG + chr6_3:81644183-81644202 None:intergenic 20.0%
!!! ATTTTTACACTAGTAAACTA+AGG - chr6_3:81644278-81644297 Msa0961050:intron 20.0%
!! AGAGATAAAAAATTCAATGA+TGG + chr6_3:81644325-81644344 None:intergenic 20.0%
!! GTGTAATAGACTTATATATA+AGG - chr6_3:81644573-81644592 Msa0961050:intron 20.0%
!! AGTTTATGAAAGTAGAAAAT+AGG + chr6_3:81644848-81644867 None:intergenic 20.0%
!! GAATTATGAAAGTAGAAAAT+AGG + chr6_3:81644873-81644892 None:intergenic 20.0%
!! GAAAAATCTAGAAAGTTATT+AGG + chr6_3:81644940-81644959 None:intergenic 20.0%
!!! AAATGCCTTTTTTATTAGTT+CGG - chr6_3:81645472-81645491 Msa0961050:CDS 20.0%
!!! ATTTTTCTTCTACTTTTTTG+TGG - chr6_3:81645769-81645788 Msa0961050:intron 20.0%
!!! TTTTTCTTCTACTTTTTTGT+GGG - chr6_3:81645770-81645789 Msa0961050:intron 20.0%
!! TAAAAAAGAAAAGAAAAGTC+TGG - chr6_3:81645981-81646000 Msa0961050:intron 20.0%
!! AAAAAAGAAAAGAAAAGTCT+GGG - chr6_3:81645982-81646001 Msa0961050:intron 20.0%
!! ATAAAATCAAATATACTCAC+AGG + chr6_3:81646341-81646360 None:intergenic 20.0%
!!! TTTTTGTAGTACTTTTTATC+AGG - chr6_3:81647021-81647040 Msa0961050:intron 20.0%
!!! TTTTGTAGTACTTTTTATCA+GGG - chr6_3:81647022-81647041 Msa0961050:intron 20.0%
!! AGATAAAGAATTAGAAACAA+AGG + chr6_3:81647077-81647096 None:intergenic 20.0%
!!! AACTTTTTGGTCATTTTTTA+TGG - chr6_3:81647444-81647463 Msa0961050:CDS 20.0%
!! AAACAAAAAATTGTTTCCTT+GGG + chr6_3:81647549-81647568 None:intergenic 20.0%
!! AAAACAAAAAATTGTTTCCT+TGG + chr6_3:81647550-81647569 None:intergenic 20.0%
! TAACTTATAAGCTAACTGAT+AGG - chr6_3:81642107-81642126 Msa0961050:intron 25.0%
! AACTTATAAGCTAACTGATA+GGG - chr6_3:81642108-81642127 Msa0961050:intron 25.0%
!! CTTATTGAATTTGAAGTGTT+TGG - chr6_3:81642160-81642179 Msa0961050:intron 25.0%
! TAATGTAGTAAGTAGAAGTT+GGG + chr6_3:81642655-81642674 None:intergenic 25.0%
! ATAATGTAGTAAGTAGAAGT+TGG + chr6_3:81642656-81642675 None:intergenic 25.0%
! ATATATTCAGAGACTTCTTA+AGG - chr6_3:81642890-81642909 Msa0961050:intron 25.0%
!! ACAGTTATATTTGTTGAGTA+TGG - chr6_3:81642968-81642987 Msa0961050:intron 25.0%
! GCAAACACTTGTAATTTAAT+GGG - chr6_3:81643155-81643174 Msa0961050:intron 25.0%
! TAGTATAAACAAGTAAAAGG+TGG + chr6_3:81643514-81643533 None:intergenic 25.0%
!! TGTTAGCTTATTCATTGAAA+TGG - chr6_3:81643583-81643602 Msa0961050:intron 25.0%
!! GTTAGCTTATTCATTGAAAT+GGG - chr6_3:81643584-81643603 Msa0961050:intron 25.0%
!! AAAACAATTAAGCACCTTTT+GGG + chr6_3:81643970-81643989 None:intergenic 25.0%
!! AAAAACAATTAAGCACCTTT+TGG + chr6_3:81643971-81643990 None:intergenic 25.0%
! AGAGAATTATTATGTTGCAA+AGG - chr6_3:81644020-81644039 Msa0961050:intron 25.0%
!!! ACTTTTCTTTTAGAACTACA+TGG - chr6_3:81644210-81644229 Msa0961050:intron 25.0%
!!! CTTTTCTTTTAGAACTACAT+GGG - chr6_3:81644211-81644230 Msa0961050:intron 25.0%
!!! ATATTTTCTGGAATGCATTA+AGG + chr6_3:81644450-81644469 None:intergenic 25.0%
!! AAAAGCAGAGAAATATTTTC+TGG + chr6_3:81644462-81644481 None:intergenic 25.0%
! AAAAAATTAAGGATCTTTGC+AGG - chr6_3:81644784-81644803 Msa0961050:intron 25.0%
! ACGAAGACTAAACATAAAAA+GGG + chr6_3:81644983-81645002 None:intergenic 25.0%
! AACGAAGACTAAACATAAAA+AGG + chr6_3:81644984-81645003 None:intergenic 25.0%
!! ATAACACTTACAATTTTGCA+GGG + chr6_3:81645090-81645109 None:intergenic 25.0%
!!! TGAAGCTAAAACTATTTTTG+AGG - chr6_3:81645193-81645212 Msa0961050:CDS 25.0%
!! ACAAAAAATATTAGCCTAGA+TGG + chr6_3:81645329-81645348 None:intergenic 25.0%
!!! AATGCCTTTTTTATTAGTTC+GGG - chr6_3:81645473-81645492 Msa0961050:CDS 25.0%
! TTAATACATCCAAGATATCA+TGG + chr6_3:81645527-81645546 None:intergenic 25.0%
!!! CCTTAAGTATTGATAAAGAA+GGG + chr6_3:81645622-81645641 None:intergenic 25.0%
!!! TCCTTAAGTATTGATAAAGA+AGG + chr6_3:81645623-81645642 None:intergenic 25.0%
!! CTCTACTATCTTTCTTTTAT+TGG - chr6_3:81645658-81645677 Msa0961050:intron 25.0%
! AAAAAGAAAAGAAAAGTCTG+GGG - chr6_3:81645983-81646002 Msa0961050:intron 25.0%
! TTCCTATCAAAATTTATACC+TGG - chr6_3:81646156-81646175 Msa0961050:intron 25.0%
! ATAAAATCAACTATACTCAC+AGG + chr6_3:81646703-81646722 None:intergenic 25.0%
! AATCATGATCTATATCACAA+AGG + chr6_3:81646758-81646777 None:intergenic 25.0%
! ATAAAATCAACTATACTCAC+AGG + chr6_3:81646703-81646722 None:intergenic 25.0%
! AAAAATCAATGCTAACCTTT+CGG + chr6_3:81647006-81647025 None:intergenic 25.0%
!!! TATCTGTTGATTCATATATC+AGG - chr6_3:81647092-81647111 Msa0961050:intron 25.0%
! ATATATCAGGATTGAAACAA+CGG - chr6_3:81647105-81647124 Msa0961050:intron 25.0%
!!! AAAACATGAGAGGTTTTATT+GGG + chr6_3:81647386-81647405 None:intergenic 25.0%
! TGAATGAGGAAAAAGTTTTG+AGG + chr6_3:81641575-81641594 None:intergenic 30.0%
CAAATCAGCTTATAGCATAA+AGG - chr6_3:81641671-81641690 Msa0961050:three_prime_UTR 30.0%
GCATTTAACAAACTCAAAAG+CGG + chr6_3:81641746-81641765 None:intergenic 30.0%
!!! GATAAACAGCTTATTTTGCA+CGG - chr6_3:81641794-81641813 Msa0961050:intron 30.0%
ATGAGGAGCTTATGAAAATA+AGG - chr6_3:81641938-81641957 Msa0961050:intron 30.0%
ACTTATAAGCTAACTGATAG+GGG - chr6_3:81642109-81642128 Msa0961050:intron 30.0%
TTTGTATAACTCTCTGGTAA+TGG + chr6_3:81642417-81642436 None:intergenic 30.0%
TGTAAGTTTGTATAACTCTC+TGG + chr6_3:81642423-81642442 None:intergenic 30.0%
!! AATTAGACACTCGTCATTTT+AGG + chr6_3:81642496-81642515 None:intergenic 30.0%
! TTGGGTGTAGCTTAATTTTT+GGG + chr6_3:81642637-81642656 None:intergenic 30.0%
GTAAAACTTAGGCATATTGA+AGG + chr6_3:81642801-81642820 None:intergenic 30.0%
CTGGAAATAAGGTAAAACTT+AGG + chr6_3:81642812-81642831 None:intergenic 30.0%
!! CTAAGTTTTACCTTATTTCC+AGG - chr6_3:81642810-81642829 Msa0961050:CDS 30.0%
TTGAGTATGGCTCAAATTAA+CGG - chr6_3:81642981-81643000 Msa0961050:intron 30.0%
GGCAAACACTTGTAATTTAA+TGG - chr6_3:81643154-81643173 Msa0961050:intron 30.0%
AACACTTGTAATTTAATGGG+TGG - chr6_3:81643158-81643177 Msa0961050:intron 30.0%
TTCCAATAATGTAATGCTAG+AGG + chr6_3:81643212-81643231 None:intergenic 30.0%
TTTATCTGTTTGTGTAGAGT+TGG - chr6_3:81643309-81643328 Msa0961050:intron 30.0%
TTATCTGTTTGTGTAGAGTT+GGG - chr6_3:81643310-81643329 Msa0961050:intron 30.0%
TAGGACAATCATGAACAATA+GGG + chr6_3:81643379-81643398 None:intergenic 30.0%
ATAGGACAATCATGAACAAT+AGG + chr6_3:81643380-81643399 None:intergenic 30.0%
TTGTTCATGATTGTCCTATT+TGG - chr6_3:81643381-81643400 Msa0961050:intron 30.0%
! TTACACTGAAGGTGAATTTT+TGG + chr6_3:81643420-81643439 None:intergenic 30.0%
TTCAATGAATAAGCTAACAC+AGG + chr6_3:81643582-81643601 None:intergenic 30.0%
TCTAAATCTACAGCTTAACA+TGG - chr6_3:81643632-81643651 Msa0961050:intron 30.0%
TAATGTACAAATCCAACCAA+GGG + chr6_3:81643831-81643850 None:intergenic 30.0%
AGTTCATACACATAAAGTAC+TGG + chr6_3:81643879-81643898 None:intergenic 30.0%
CATGTCAAGTTTGATATGAA+TGG - chr6_3:81644356-81644375 Msa0961050:intron 30.0%
TCAAGTTTGATATGAATGGA+AGG - chr6_3:81644360-81644379 Msa0961050:intron 30.0%
CAAGTTTGATATGAATGGAA+GGG - chr6_3:81644361-81644380 Msa0961050:intron 30.0%
TCTTCTTGTAGACATATATG+TGG + chr6_3:81644502-81644521 None:intergenic 30.0%
! TCTGTAATGGTAATGTTAGT+TGG - chr6_3:81644681-81644700 Msa0961050:intron 30.0%
!!! ATAATATTTGGTTTTAGCCC+AGG - chr6_3:81644895-81644914 Msa0961050:CDS 30.0%
GATATCTTGATAGATAACCT+GGG + chr6_3:81644915-81644934 None:intergenic 30.0%
TGATATCTTGATAGATAACC+TGG + chr6_3:81644916-81644935 None:intergenic 30.0%
AGACTAAACATAAAAAGGGA+GGG + chr6_3:81644979-81644998 None:intergenic 30.0%
AAGACTAAACATAAAAAGGG+AGG + chr6_3:81644980-81644999 None:intergenic 30.0%
!! TTTAGTCTTCGTTTTGTTGA+CGG - chr6_3:81644991-81645010 Msa0961050:intron 30.0%
! TAACACTTACAATTTTGCAG+GGG + chr6_3:81645089-81645108 None:intergenic 30.0%
! CATAACACTTACAATTTTGC+AGG + chr6_3:81645091-81645110 None:intergenic 30.0%
! TCAAAGGGGAATATGTTTTA+TGG + chr6_3:81645292-81645311 None:intergenic 30.0%
! TACGTTTTTCTTACTCTAGA+CGG - chr6_3:81645372-81645391 Msa0961050:CDS 30.0%
ATCCAACAGTTATAGATCAA+TGG + chr6_3:81645581-81645600 None:intergenic 30.0%
CCCTTCTTTATCAATACTTA+AGG - chr6_3:81645619-81645638 Msa0961050:intron 30.0%
!! CACCAGGTATAAATTTTGAT+AGG + chr6_3:81646161-81646180 None:intergenic 30.0%
CTATCAAAATTTATACCTGG+TGG - chr6_3:81646159-81646178 Msa0961050:intron 30.0%
CTCGACTTTCAACTTAAATT+TGG - chr6_3:81646190-81646209 Msa0961050:intron 30.0%
GCATGATCTATATCACAAAA+AGG + chr6_3:81646400-81646419 None:intergenic 30.0%
GCATGATCTATATCACAAAA+AGG + chr6_3:81646400-81646419 None:intergenic 30.0%
!! AGTACTTTTTATCAGGGTAT+AGG - chr6_3:81647028-81647047 Msa0961050:intron 30.0%
TAAGCCAATAGGATGTATTT+CGG - chr6_3:81647139-81647158 Msa0961050:intron 30.0%
AATTCCGAAATACATCCTAT+TGG + chr6_3:81647146-81647165 None:intergenic 30.0%
AATGTGATTAATGCTTGTGT+TGG + chr6_3:81647224-81647243 None:intergenic 30.0%
!! CAAAACATGAGAGGTTTTAT+TGG + chr6_3:81647387-81647406 None:intergenic 30.0%
! TCCTTTACATCTGGTTATTT+TGG - chr6_3:81647509-81647528 Msa0961050:intron 30.0%
TCCAAAATAACCAGATGTAA+AGG + chr6_3:81647513-81647532 None:intergenic 30.0%
TATAGTATGTTTGATATCGC+AGG - chr6_3:81647571-81647590 Msa0961050:intron 30.0%
ATAGTATGTTTGATATCGCA+GGG - chr6_3:81647572-81647591 Msa0961050:intron 30.0%
TTCAAAAACACTCGTGAATG+AGG + chr6_3:81641589-81641608 None:intergenic 35.0%
TTACGCATTAAGTGTCTGTT+TGG - chr6_3:81641772-81641791 Msa0961050:intron 35.0%
AGGAGCTTATGAAAATAAGG+TGG - chr6_3:81641941-81641960 Msa0961050:three_prime_UTR 35.0%
CCAAACAATAACGAAGTCTT+CGG + chr6_3:81642072-81642091 None:intergenic 35.0%
! ACCAAACTGCTATCTTTTGA+CGG + chr6_3:81642459-81642478 None:intergenic 35.0%
! TGGGTGTAGCTTAATTTTTG+GGG + chr6_3:81642636-81642655 None:intergenic 35.0%
! GTTGGGTGTAGCTTAATTTT+TGG + chr6_3:81642638-81642657 None:intergenic 35.0%
ATGTCCTGACTTTAAACACA+CGG + chr6_3:81642841-81642860 None:intergenic 35.0%
AATATATTGCGTAACAGGAG+AGG + chr6_3:81642877-81642896 None:intergenic 35.0%
CTCTGAATATATTGCGTAAC+AGG + chr6_3:81642882-81642901 None:intergenic 35.0%
! GCTCAAATTAACGGATAAGT+GGG - chr6_3:81642990-81643009 Msa0961050:intron 35.0%
TTGAGCATGGATCATTCATA+GGG - chr6_3:81643076-81643095 Msa0961050:intron 35.0%
TCATAGGGTTATGACTATGA+CGG - chr6_3:81643091-81643110 Msa0961050:intron 35.0%
AGCCTCTAGCATTACATTAT+TGG - chr6_3:81643207-81643226 Msa0961050:intron 35.0%
TCTTCTTTCTCTTACACTGA+AGG + chr6_3:81643431-81643450 None:intergenic 35.0%
AGCTTATTCATTGAAATGGG+CGG - chr6_3:81643587-81643606 Msa0961050:intron 35.0%
AATCTACAGCTTAACATGGA+AGG - chr6_3:81643636-81643655 Msa0961050:intron 35.0%
ATCTACAGCTTAACATGGAA+GGG - chr6_3:81643637-81643656 Msa0961050:intron 35.0%
ACAAATATATAGCGTGCTTC+AGG + chr6_3:81643720-81643739 None:intergenic 35.0%
ACGCTATATATTTGTGCATG+AGG - chr6_3:81643725-81643744 Msa0961050:intron 35.0%
GTAATGTACAAATCCAACCA+AGG + chr6_3:81643832-81643851 None:intergenic 35.0%
!!! TGTACATTACCGCTTTGTTT+TGG - chr6_3:81643842-81643861 Msa0961050:intron 35.0%
AAGGACACAACTTATAGTCT+AGG - chr6_3:81644039-81644058 Msa0961050:intron 35.0%
GGCTTATACAAAAGCAGTTA+GGG + chr6_3:81644404-81644423 None:intergenic 35.0%
AGGCTTATACAAAAGCAGTT+AGG + chr6_3:81644405-81644424 None:intergenic 35.0%
!! ATATTTCTCTGCTTTTGAGC+AGG - chr6_3:81644466-81644485 Msa0961050:intron 35.0%
TGTAGACATATATGTGGTTC+AGG + chr6_3:81644496-81644515 None:intergenic 35.0%
GACTAAACATAAAAAGGGAG+GGG + chr6_3:81644978-81644997 None:intergenic 35.0%
!! TTAGTCTTCGTTTTGTTGAC+GGG - chr6_3:81644992-81645011 Msa0961050:intron 35.0%
!! ACCTTCTAAAGTTGATCCAA+TGG - chr6_3:81645055-81645074 Msa0961050:intron 35.0%
ACCATTGGATCAACTTTAGA+AGG + chr6_3:81645059-81645078 None:intergenic 35.0%
! AACACTTACAATTTTGCAGG+GGG + chr6_3:81645088-81645107 None:intergenic 35.0%
TTTCTGTTCTCATATGCAGA+TGG - chr6_3:81645133-81645152 Msa0961050:intron 35.0%
! GTTCCATGTTGTAGTACTTT+TGG - chr6_3:81645419-81645438 Msa0961050:CDS 35.0%
!! TTGCCAAAAGTACTACAACA+TGG + chr6_3:81645425-81645444 None:intergenic 35.0%
!!! CCTTTTTTATTAGTTCGGGT+CGG - chr6_3:81645477-81645496 Msa0961050:CDS 35.0%
CAACCAAAACCATGATATCT+TGG - chr6_3:81645515-81645534 Msa0961050:intron 35.0%
! CATCCAAGATATCATGGTTT+TGG + chr6_3:81645521-81645540 None:intergenic 35.0%
CTCCATTGATCTATAACTGT+TGG - chr6_3:81645576-81645595 Msa0961050:intron 35.0%
TAATCATCAGAGAGAAATCG+CGG + chr6_3:81645689-81645708 None:intergenic 35.0%
CACATTGGACAAGATATGAT+TGG + chr6_3:81645717-81645736 None:intergenic 35.0%
AACCATCATCATGTTCACAT+TGG + chr6_3:81645732-81645751 None:intergenic 35.0%
!!! TTCTACTTTTTTGTGGGATG+AGG - chr6_3:81645776-81645795 Msa0961050:intron 35.0%
TGTTACACACAACTGTTTGT+AGG - chr6_3:81645829-81645848 Msa0961050:intron 35.0%
TGATAGACTTAAATTGCGCA+TGG + chr6_3:81646086-81646105 None:intergenic 35.0%
GTCTATCATATCTACAGAGA+AGG - chr6_3:81646098-81646117 Msa0961050:intron 35.0%
! AAGGTGTTTCTTGTGTAGAT+AGG - chr6_3:81646117-81646136 Msa0961050:intron 35.0%
TGTTTCTTGTGTAGATAGGA+TGG - chr6_3:81646121-81646140 Msa0961050:intron 35.0%
! CAATTTTCACAACCTCTCAT+AGG - chr6_3:81646247-81646266 Msa0961050:CDS 35.0%
! CAATTTTCACAACCTCTCAT+AGG - chr6_3:81646247-81646266 Msa0961050:CDS 35.0%
! CAATTTTCACAACCTCTCAT+AGG - chr6_3:81646247-81646266 Msa0961050:CDS 35.0%
TTTATCAGGGTATAGGATTG+AGG - chr6_3:81647035-81647054 Msa0961050:intron 35.0%
TTATCAGGGTATAGGATTGA+GGG - chr6_3:81647036-81647055 Msa0961050:intron 35.0%
TTAGCTTAAGAGCTCTATTC+AGG + chr6_3:81647169-81647188 None:intergenic 35.0%
! AGGAAGAATGCTCAACTTTT+TGG - chr6_3:81647431-81647450 Msa0961050:CDS 35.0%
! TTGCACTTTTCCTTTACATC+TGG - chr6_3:81647500-81647519 Msa0961050:intron 35.0%
GGATTTATCTCAAATTCCCA+AGG - chr6_3:81647530-81647549 Msa0961050:intron 35.0%
CTTCTCATGTTAACTGCATT+GGG - chr6_3:81647643-81647662 Msa0961050:CDS 35.0%
TAACCTTCTCTCTGTTACGA+CGG + chr6_3:81641525-81641544 None:intergenic 40.0%
GATAATCGGGAAAAGAATCG+AGG + chr6_3:81641701-81641720 None:intergenic 40.0%
CCGAAGACTTCGTTATTGTT+TGG - chr6_3:81642069-81642088 Msa0961050:intron 40.0%
TCCGTCAAAAGATAGCAGTT+TGG - chr6_3:81642455-81642474 Msa0961050:CDS 40.0%
! GTGTGTTTAAAGTCAGGACA+TGG - chr6_3:81642840-81642859 Msa0961050:CDS 40.0%
! GGCTCAAATTAACGGATAAG+TGG - chr6_3:81642989-81643008 Msa0961050:intron 40.0%
GTTGAGCATGGATCATTCAT+AGG - chr6_3:81643075-81643094 Msa0961050:intron 40.0%
AATACCCCATGGTACAGTTT+AGG - chr6_3:81643131-81643150 Msa0961050:intron 40.0%
ATACCCCATGGTACAGTTTA+GGG - chr6_3:81643132-81643151 Msa0961050:intron 40.0%
! GAGAAGAGCACAAACCAAAT+AGG + chr6_3:81643398-81643417 None:intergenic 40.0%
TACCGCGAACATAAAAAAGG+GGG + chr6_3:81643557-81643576 None:intergenic 40.0%
CTACCGCGAACATAAAAAAG+GGG + chr6_3:81643558-81643577 None:intergenic 40.0%
CCTACCGCGAACATAAAAAA+GGG + chr6_3:81643559-81643578 None:intergenic 40.0%
GCTTATTCATTGAAATGGGC+GGG - chr6_3:81643588-81643607 Msa0961050:intron 40.0%
AAAGGTGAAGCGTAGAGAAA+TGG - chr6_3:81643689-81643708 Msa0961050:intron 40.0%
! TCTTCTTGACGACTAGTTGA+AGG + chr6_3:81643801-81643820 None:intergenic 40.0%
ACTAGTCGTCAAGAAGATAG+TGG - chr6_3:81643804-81643823 Msa0961050:intron 40.0%
CCTCTTCTTCCAAAACAAAG+CGG + chr6_3:81643854-81643873 None:intergenic 40.0%
AGGATTGGGAAAGCTTCTAA+TGG - chr6_3:81643926-81643945 Msa0961050:intron 40.0%
TATTGAGCTTATCGCCCAAA+AGG - chr6_3:81643953-81643972 Msa0961050:CDS 40.0%
TGTCGTGCTAACTGTTCAAA+GGG - chr6_3:81644237-81644256 Msa0961050:intron 40.0%
CAAATAACCACGTGATGCTA+GGG + chr6_3:81644608-81644627 None:intergenic 40.0%
TAACAGTGATTGACATGTCG+AGG + chr6_3:81644638-81644657 None:intergenic 40.0%
! ATCAACTTTAGAAGGTGACG+TGG + chr6_3:81645051-81645070 None:intergenic 40.0%
! ACACTTACAATTTTGCAGGG+GGG + chr6_3:81645087-81645106 None:intergenic 40.0%
TCAACACAGATAGCTCAAAG+GGG + chr6_3:81645306-81645325 None:intergenic 40.0%
GTCAACACAGATAGCTCAAA+GGG + chr6_3:81645307-81645326 None:intergenic 40.0%
CCGACCCGAACTAATAAAAA+AGG + chr6_3:81645480-81645499 None:intergenic 40.0%
AAGAAGGGTCAACAAGAATG+CGG + chr6_3:81645607-81645626 None:intergenic 40.0%
GAAAGATAGTAGAGTTTGCG+AGG + chr6_3:81645652-81645671 None:intergenic 40.0%
GTCCAATGTGAACATGATGA+TGG - chr6_3:81645727-81645746 Msa0961050:intron 40.0%
CAGTTGTGTGTAACAATCAG+AGG + chr6_3:81645824-81645843 None:intergenic 40.0%
ATAGATATCACACCAGATCG+TGG - chr6_3:81645922-81645941 Msa0961050:intron 40.0%
TAGACTTAAATTGCGCATGG+AGG + chr6_3:81646083-81646102 None:intergenic 40.0%
! TCATGCTCAGTTGATTGGTT+GGG + chr6_3:81646308-81646327 None:intergenic 40.0%
! CAATTTTCACAACCTCTCGT+AGG - chr6_3:81646609-81646628 Msa0961050:intron 40.0%
ACATGAGGAAGTAAGCCAAT+AGG - chr6_3:81647128-81647147 Msa0961050:intron 40.0%
AACCGATGAATGAGAGATAG+CGG + chr6_3:81647360-81647379 None:intergenic 40.0%
!!! ACCTCTCATGTTTTGTTTGC+AGG - chr6_3:81647392-81647411 Msa0961050:intron 40.0%
TCCTGCAAACAAAACATGAG+AGG + chr6_3:81647396-81647415 None:intergenic 40.0%
TTGCAGGATAGTGAATGAGT+TGG - chr6_3:81647408-81647427 Msa0961050:CDS 40.0%
! AAGGAAAAGTGCAAGACACA+GGG + chr6_3:81647494-81647513 None:intergenic 40.0%
! AAAGGAAAAGTGCAAGACAC+AGG + chr6_3:81647495-81647514 None:intergenic 40.0%
GCTTCTCATGTTAACTGCAT+TGG - chr6_3:81647642-81647661 Msa0961050:CDS 40.0%
!! TGTGTGTTGCATTGGTTCCA+CGG + chr6_3:81641496-81641515 None:intergenic 45.0%
! ACAAAACCGTTCCGTTTTGC+AGG - chr6_3:81641614-81641633 Msa0961050:three_prime_UTR 45.0%
CTTTGCGAGTACCTGCAAAA+CGG + chr6_3:81641628-81641647 None:intergenic 45.0%
ATTTCGAAGCGGCGATAATC+GGG + chr6_3:81641714-81641733 None:intergenic 45.0%
GATTTCGAAGCGGCGATAAT+CGG + chr6_3:81641715-81641734 None:intergenic 45.0%
TATCGCCGCTTCGAAATCAA+CGG - chr6_3:81641717-81641736 Msa0961050:intron 45.0%
!! GGTTACCGTTGATTTCGAAG+CGG + chr6_3:81641725-81641744 None:intergenic 45.0%
ACGAAGTCTTCGGACATGTT+TGG + chr6_3:81642062-81642081 None:intergenic 45.0%
!! TCGTCATTTTAGGCTCTGGT+TGG + chr6_3:81642486-81642505 None:intergenic 45.0%
!! ACACTCGTCATTTTAGGCTC+TGG + chr6_3:81642490-81642509 None:intergenic 45.0%
TTTAAACACACGGAGAGACC+TGG + chr6_3:81642831-81642850 None:intergenic 45.0%
! CTCTCCGTGTGTTTAAAGTC+AGG - chr6_3:81642834-81642853 Msa0961050:CDS 45.0%
ATTGCGTAACAGGAGAGGAA+AGG + chr6_3:81642872-81642891 None:intergenic 45.0%
TACCCCATGGTACAGTTTAG+GGG - chr6_3:81643133-81643152 Msa0961050:intron 45.0%
TTGCCCCTAAACTGTACCAT+GGG + chr6_3:81643139-81643158 None:intergenic 45.0%
TTTGCCCCTAAACTGTACCA+TGG + chr6_3:81643140-81643159 None:intergenic 45.0%
! CGTTCTGTTGTCTGAGATGT+AGG - chr6_3:81643244-81643263 Msa0961050:intron 45.0%
! GTCTGAGATGTAGGCACAAT+TGG - chr6_3:81643253-81643272 Msa0961050:intron 45.0%
ACGCAGACAAGAACAGACAA+TGG + chr6_3:81643286-81643305 None:intergenic 45.0%
CTCGTGACTCATGACTATAC+AGG + chr6_3:81643339-81643358 None:intergenic 45.0%
TTTATCATGAGGGCGAGCAT+TGG - chr6_3:81643488-81643507 Msa0961050:intron 45.0%
!!! GTCCCCCTTTTTTATGTTCG+CGG - chr6_3:81643552-81643571 Msa0961050:intron 45.0%
!!! CCCTTTTTTATGTTCGCGGT+AGG - chr6_3:81643556-81643575 Msa0961050:intron 45.0%
GCCTACCGCGAACATAAAAA+AGG + chr6_3:81643560-81643579 None:intergenic 45.0%
CTTAACATGGAAGGGCCATA+TGG - chr6_3:81643645-81643664 Msa0961050:intron 45.0%
TCTTGCCACTCAGATCCATA+TGG + chr6_3:81643663-81643682 None:intergenic 45.0%
ATATGGATCTGAGTGGCAAG+AGG - chr6_3:81643662-81643681 Msa0961050:intron 45.0%
TGAGTGGCAAGAGGAAGAAA+AGG - chr6_3:81643671-81643690 Msa0961050:intron 45.0%
!! GATGACAACAGTGTTGACTG+AGG - chr6_3:81643770-81643789 Msa0961050:intron 45.0%
! TCAAGAAGATAGTGGTCCCT+TGG - chr6_3:81643812-81643831 Msa0961050:intron 45.0%
!!! CCGCTTTGTTTTGGAAGAAG+AGG - chr6_3:81643851-81643870 Msa0961050:intron 45.0%
CTGTCGTGCTAACTGTTCAA+AGG - chr6_3:81644236-81644255 Msa0961050:intron 45.0%
ATGTTTACCCTAGCATCACG+TGG - chr6_3:81644598-81644617 Msa0961050:intron 45.0%
GCAAATAACCACGTGATGCT+AGG + chr6_3:81644609-81644628 None:intergenic 45.0%
CAATCTAATGGTGCAGTGAG+TGG + chr6_3:81645223-81645242 None:intergenic 45.0%
GGTCAACACAGATAGCTCAA+AGG + chr6_3:81645308-81645327 None:intergenic 45.0%
! GCTATCTGTGTTGACCATCT+AGG - chr6_3:81645312-81645331 Msa0961050:CDS 45.0%
AAAACAGTTACGCCACGATC+TGG + chr6_3:81645937-81645956 None:intergenic 45.0%
AAAGAAAAGTCTGGGGACTC+AGG - chr6_3:81645990-81646009 Msa0961050:intron 45.0%
AGTCGAGATAGAATTCCACC+AGG + chr6_3:81646177-81646196 None:intergenic 45.0%
TCACAACCTCTCATAGGACA+CGG - chr6_3:81646253-81646272 Msa0961050:CDS 45.0%
! CATGCTCAGTTGATTGGTTG+GGG + chr6_3:81646307-81646326 None:intergenic 45.0%
CTCATGCTCAGTTGATTGGT+TGG + chr6_3:81646309-81646328 None:intergenic 45.0%
CAACCAATCAACTGAGCATG+AGG - chr6_3:81646307-81646326 Msa0961050:intron 45.0%
CCTCTCATAGGACATGACTT+CGG - chr6_3:81646441-81646460 Msa0961050:intron 45.0%
CTCTCATAGGACATGACTTC+GGG - chr6_3:81646442-81646461 Msa0961050:intron 45.0%
TCACAACCTCTCATAGGACA+CGG - chr6_3:81646253-81646272 Msa0961050:CDS 45.0%
!!! TCTGGCGTTGATACTTTTCC+AGG - chr6_3:81646278-81646297 Msa0961050:CDS 45.0%
CAATGCTAACCTTTCGGCAT+CGG + chr6_3:81647000-81647019 None:intergenic 45.0%
GGATTGAAACAACGGACATG+AGG - chr6_3:81647113-81647132 Msa0961050:intron 45.0%
GCTAATGATGTCGTTGCTGA+AGG - chr6_3:81647184-81647203 Msa0961050:intron 45.0%
CACCGCTATCTCTCATTCAT+CGG - chr6_3:81647355-81647374 Msa0961050:intron 45.0%
! CAGGATAGTGAATGAGTTGG+AGG - chr6_3:81647411-81647430 Msa0961050:CDS 45.0%
TCCTTCGTCACATTACTGAG+TGG - chr6_3:81647468-81647487 Msa0961050:CDS 45.0%
!!! CAGTTTTAGCTCGAACTTGC+AGG + chr6_3:81647613-81647632 None:intergenic 45.0%
GGCGTTGTTGTGTGTTGCAT+TGG + chr6_3:81641504-81641523 None:intergenic 50.0%
CGAGTACCTGCAAAACGGAA+CGG + chr6_3:81641623-81641642 None:intergenic 50.0%
CACGGAGAGACCTGGAAATA+AGG + chr6_3:81642823-81642842 None:intergenic 50.0%
AGACGCTTGAGCATAGTGAG+TGG - chr6_3:81643014-81643033 Msa0961050:intron 50.0%
! GATCTGAAAGTGCAACGTCG+CGG - chr6_3:81643036-81643055 Msa0961050:intron 50.0%
AGAGGTCATGACGTTGAGCA+TGG - chr6_3:81643063-81643082 Msa0961050:intron 50.0%
GACTATGACGGTTGCAAGTG+TGG - chr6_3:81643103-81643122 Msa0961050:intron 50.0%
TATGACGGTTGCAAGTGTGG+CGG - chr6_3:81643106-81643125 Msa0961050:intron 50.0%
TGCCCCTAAACTGTACCATG+GGG + chr6_3:81643138-81643157 None:intergenic 50.0%
AAGGGCCATATGGATCTGAG+TGG - chr6_3:81643655-81643674 Msa0961050:intron 50.0%
! GAAGATAGTGGTCCCTTGGT+TGG - chr6_3:81643816-81643835 Msa0961050:intron 50.0%
! CTCAGTTGATTGGTTGGGGT+CGG + chr6_3:81646303-81646322 None:intergenic 50.0%
CAGCCTCATGCTCAGTTGAT+TGG + chr6_3:81646313-81646332 None:intergenic 50.0%
CCGAAGTCATGTCCTATGAG+AGG + chr6_3:81646444-81646463 None:intergenic 50.0%
TCGTCCTCAGTTGGTTGGAT+GGG + chr6_3:81646490-81646509 None:intergenic 50.0%
ATTTCAGCCTCGTCCTCAGT+TGG + chr6_3:81646499-81646518 None:intergenic 50.0%
TCACAACCTCTCGTAGGACA+TGG - chr6_3:81646615-81646634 Msa0961050:intron 50.0%
! CTCAGTTGGTTGGATGGGTT+CGG + chr6_3:81646665-81646684 None:intergenic 50.0%
GAACCCATCCAACCAACTGA+GGG - chr6_3:81646664-81646683 Msa0961050:intron 50.0%
ATTTCAGCCTCGTCGTCAGT+TGG + chr6_3:81646855-81646874 None:intergenic 50.0%
GCCACTCAGTAATGTGACGA+AGG + chr6_3:81647472-81647491 None:intergenic 50.0%
AGCTCGAACTTGCAGGAGTT+AGG + chr6_3:81647606-81647625 None:intergenic 50.0%
AGCGTCTCCGAGTTCATTGC+TGG + chr6_3:81641464-81641483 None:intergenic 55.0%
!! CATTGGTTCCACGGTCACGT+TGG + chr6_3:81641487-81641506 None:intergenic 55.0%
ACGCCGTCGTAACAGAGAGA+AGG - chr6_3:81641519-81641538 Msa0961050:three_prime_UTR 55.0%
AATCCTTTCCCCTGGACACG+AGG + chr6_3:81643912-81643931 None:intergenic 55.0%
TCGTGTCCAGGGGAAAGGAT+TGG - chr6_3:81643911-81643930 Msa0961050:intron 55.0%
CGTGTCCAGGGGAAAGGATT+GGG - chr6_3:81643912-81643931 Msa0961050:intron 55.0%
GCTTTCCCAATCCTTTCCCC+TGG + chr6_3:81643920-81643939 None:intergenic 55.0%
! TGCAGGGGGGTACATACCAT+TGG + chr6_3:81645074-81645093 None:intergenic 55.0%
CAGAAGCCGTGTCCTATGAG+AGG + chr6_3:81646262-81646281 None:intergenic 55.0%
CTCTCATAGGACACGGCTTC+TGG - chr6_3:81646260-81646279 Msa0961050:CDS 55.0%
CTCAGTTGGTTGGATGGGGT+CGG + chr6_3:81646485-81646504 None:intergenic 55.0%
CGTCCTCAGTTGGTTGGATG+GGG + chr6_3:81646489-81646508 None:intergenic 55.0%
CTCGTCCTCAGTTGGTTGGA+TGG + chr6_3:81646491-81646510 None:intergenic 55.0%
CATCCAACCAACTGAGGACG+AGG - chr6_3:81646489-81646508 Msa0961050:intron 55.0%
CAGAAGCCATGTCCTACGAG+AGG + chr6_3:81646624-81646643 None:intergenic 55.0%
CTCTCGTAGGACATGGCTTC+TGG - chr6_3:81646622-81646641 Msa0961050:intron 55.0%
CGAACCCATCCAACCAACTG+AGG - chr6_3:81646663-81646682 Msa0961050:intron 55.0%
TCGCCCTCAGTTGGTTGGAT+GGG + chr6_3:81646670-81646689 None:intergenic 55.0%
ATTTCAGCCTCGCCCTCAGT+TGG + chr6_3:81646679-81646698 None:intergenic 55.0%
CAGAAGCCGTGTCCTATGAG+AGG + chr6_3:81646262-81646281 None:intergenic 55.0%
CTCTCATAGGACACGGCTTC+TGG - chr6_3:81646260-81646279 Msa0961050:CDS 55.0%
!! TCGTCGTCAGTTGGTTCGTC+GGG + chr6_3:81646846-81646865 None:intergenic 55.0%
!! CTCGTCGTCAGTTGGTTCGT+CGG + chr6_3:81646847-81646866 None:intergenic 55.0%
ACGTTGATGCCGATGCCGAA+AGG - chr6_3:81646988-81647007 Msa0961050:intron 55.0%
! GTGCAACGTCGCGGATTGAG+AGG - chr6_3:81643045-81643064 Msa0961050:intron 60.0%
GTGTGGCGGCAAATACCCCA+TGG - chr6_3:81643120-81643139 Msa0961050:intron 60.0%
! GTTGATTGGTTGGGGTCGGC+AGG + chr6_3:81646299-81646318 None:intergenic 60.0%
GTTGGTTGGATGGGGTCGGA+AGG + chr6_3:81646481-81646500 None:intergenic 60.0%
CGACCCCATCCAACCAACTG+AGG - chr6_3:81646483-81646502 Msa0961050:intron 60.0%
CAGCCTCGTCCTCAGTTGGT+TGG + chr6_3:81646495-81646514 None:intergenic 60.0%
! GTTGGTTGGATGGGTTCGGC+AGG + chr6_3:81646661-81646680 None:intergenic 60.0%
CTCGCCCTCAGTTGGTTGGA+TGG + chr6_3:81646671-81646690 None:intergenic 60.0%
CATCCAACCAACTGAGGGCG+AGG - chr6_3:81646669-81646688 Msa0961050:intron 60.0%
!! CGTCGTCAGTTGGTTCGTCG+GGG + chr6_3:81646845-81646864 None:intergenic 60.0%
CGACGAACCAACTGACGACG+AGG - chr6_3:81646845-81646864 Msa0961050:intron 60.0%
GAGACGCTCCAACGTGACCG+TGG - chr6_3:81641476-81641495 Msa0961050:three_prime_UTR 65.0%
ACAGCTCGAGCCTCGTGTCC+AGG - chr6_3:81643899-81643918 Msa0961050:intron 65.0%
CAGCTCGAGCCTCGTGTCCA+GGG - chr6_3:81643900-81643919 Msa0961050:intron 65.0%
AGCTCGAGCCTCGTGTCCAG+GGG - chr6_3:81643901-81643920 Msa0961050:intron 65.0%
GAGCCTCGTGTCCAGGGGAA+AGG - chr6_3:81643906-81643925 Msa0961050:intron 65.0%
CAGCCTCGCCCTCAGTTGGT+TGG + chr6_3:81646675-81646694 None:intergenic 65.0%
!! GTTGGTTCGTCGGGGTCACC+TGG + chr6_3:81646837-81646856 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 81641455 81647691 81641455 ID=Msa0961050;Name=Msa0961050
chr6_3 mRNA 81641455 81647691 81641455 ID=Msa0961050-mRNA-1;Parent=Msa0961050;Name=Msa0961050-mRNA-1;_AED=0.15;_eAED=0.15;_QI=12|1|1|1|0.84|0.92|14|342|377
chr6_3 exon 81641455 81641732 81641455 ID=Msa0961050-mRNA-1:exon:14658;Parent=Msa0961050-mRNA-1
chr6_3 exon 81641941 81642032 81641941 ID=Msa0961050-mRNA-1:exon:14657;Parent=Msa0961050-mRNA-1
chr6_3 exon 81642137 81642168 81642137 ID=Msa0961050-mRNA-1:exon:14656;Parent=Msa0961050-mRNA-1
chr6_3 exon 81642268 81642339 81642268 ID=Msa0961050-mRNA-1:exon:14655;Parent=Msa0961050-mRNA-1
chr6_3 exon 81642444 81642515 81642444 ID=Msa0961050-mRNA-1:exon:14654;Parent=Msa0961050-mRNA-1
chr6_3 exon 81642624 81642695 81642624 ID=Msa0961050-mRNA-1:exon:14653;Parent=Msa0961050-mRNA-1
chr6_3 exon 81642806 81642877 81642806 ID=Msa0961050-mRNA-1:exon:14652;Parent=Msa0961050-mRNA-1
chr6_3 exon 81643932 81643994 81643932 ID=Msa0961050-mRNA-1:exon:14651;Parent=Msa0961050-mRNA-1
chr6_3 exon 81644070 81644112 81644070 ID=Msa0961050-mRNA-1:exon:14650;Parent=Msa0961050-mRNA-1
chr6_3 exon 81644847 81644923 81644847 ID=Msa0961050-mRNA-1:exon:14649;Parent=Msa0961050-mRNA-1
chr6_3 exon 81645172 81645501 81645172 ID=Msa0961050-mRNA-1:exon:14648;Parent=Msa0961050-mRNA-1
chr6_3 exon 81646235 81646314 81646235 ID=Msa0961050-mRNA-1:exon:14647;Parent=Msa0961050-mRNA-1
chr6_3 exon 81647408 81647510 81647408 ID=Msa0961050-mRNA-1:exon:14646;Parent=Msa0961050-mRNA-1
chr6_3 exon 81647590 81647691 81647590 ID=Msa0961050-mRNA-1:exon:14645;Parent=Msa0961050-mRNA-1
chr6_3 five_prime_UTR 81647680 81647691 81647680 ID=Msa0961050-mRNA-1:five_prime_utr;Parent=Msa0961050-mRNA-1
chr6_3 CDS 81647590 81647679 81647590 ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1
chr6_3 CDS 81647408 81647510 81647408 ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1
chr6_3 CDS 81646235 81646314 81646235 ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1
chr6_3 CDS 81645172 81645501 81645172 ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1
chr6_3 CDS 81644847 81644923 81644847 ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1
chr6_3 CDS 81644070 81644112 81644070 ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1
chr6_3 CDS 81643932 81643994 81643932 ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1
chr6_3 CDS 81642806 81642877 81642806 ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1
chr6_3 CDS 81642624 81642695 81642624 ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1
chr6_3 CDS 81642444 81642515 81642444 ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1
chr6_3 CDS 81642268 81642339 81642268 ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1
chr6_3 CDS 81642137 81642168 81642137 ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1
chr6_3 CDS 81642005 81642032 81642005 ID=Msa0961050-mRNA-1:cds;Parent=Msa0961050-mRNA-1
chr6_3 three_prime_UTR 81641941 81642004 81641941 ID=Msa0961050-mRNA-1:three_prime_utr;Parent=Msa0961050-mRNA-1
chr6_3 three_prime_UTR 81641455 81641732 81641455 ID=Msa0961050-mRNA-1:three_prime_utr;Parent=Msa0961050-mRNA-1
Gene Sequence

>Msa0961050

ATGAACTCGGAGACGCTCCAACGTGACCGTGGAACCAATGCAACACACAACAACGCCGTCGTAACAGAGAGAAGGTTAACACGCAGCGAAGTACTCGCAAAGAAGAACGCAAATGAACAACTCATCAAATCAGCTTATAGCATAAAGGATCACCTCGATTCTTTTCCCGATTATCGCCGCTTCGAAATCAACGGTCTCTCCGTGTGTTTAAAGTCAGGACATGGCACTAACCTTTCCTCTCCTGTTACGCAATATATTCAGAGACTTCTTAAGCTTAACATGGAAGGGCCATATGGATCTGAGTGGCAAGAGGAAGAAAAGGTGAAGCGTAGAGAAATGGTTGATCCTGAAGCACGCTATATATTTGTGCATGAGGTTACTAATGCAAATGCTGACGAGATGACAACAGTGTTGACTGAGGAAGATCCTTCAACTAGTCGTCAAGAAGATAGTGGTCCCTTGGTTGGATTTGTACATTACCGCTTTGTTTTGGAAGAAGAGGTACCAGTACTTTATGTGTATGAACTACAGCTCGAGCCTCGTGTCCAGGGGAAAGGATTGGGAAAGCTTCTAATGGAACTTATTGAGCTTATCGCCCAAAAGAACTACATGGGTGCTGTCGTGCTAACTGTTCAAAGGGCGAACATATCAGCTATGAATTTTTACACTAGTAAACTAAGATATATCATATCAGCCACGTCACCTTCTAAAGTTGATCCAATGATGGAGAAGAGTTATGAAATTCTTTGCAGAATATTTAATGATGAAGCTAAAACTATTTTTGAGGACACGGCTTCTGGCGTTGATACTTTTCCTGCCGACCCCAACCAATCAACTGAGCATGAGGCTGAAATTCCTGACATGACTTCGGGCATTGATACTTTTCCTTCCGACCCCATCCAACCAACTGAGGACGAGGCTGAAATTCTTGACATGGCTTCTGGCATTGATACTTTTCCTGCCGAACCCATCCAACCAACTGAGGGCGAGGCTGAAATTCCTGACACGGCTTCTGGCGTTGATACTTTTCCAGGTGACCCCGACGAACCAACTGACGACGAGGCTGAAATTCCTTCGGATGATGACGTTGATGCCGATGCCGAAAGGATTGAAACAACGGACATGAGGAAGTAA

Protein sequence

>Msa0961050

MNSETLQRDRGTNATHNNAVVTERRLTRSEVLAKKNANEQLIKSAYSIKDHLDSFPDYRRFEINGLSVCLKSGHGTNLSSPVTQYIQRLLKLNMEGPYGSEWQEEEKVKRREMVDPEARYIFVHEVTNANADEMTTVLTEEDPSTSRQEDSGPLVGFVHYRFVLEEEVPVLYVYELQLEPRVQGKGLGKLLMELIELIAQKNYMGAVVLTVQRANISAMNFYTSKLRYIISATSPSKVDPMMEKSYEILCRIFNDEAKTIFEDTASGVDTFPADPNQSTEHEAEIPDMTSGIDTFPSDPIQPTEDEAEILDMASGIDTFPAEPIQPTEGEAEIPDTASGVDTFPGDPDEPTDDEAEIPSDDDVDADAERIETTDMRK*