Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961290 | XP_039682782.1 | 100.000 | 172 | 0 | 0 | 1 | 172 | 1 | 172 | 1.13e-126 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961290 | sp|Q9C9X7|IDD14_ARATH | 92.763 | 152 | 10 | 1 | 22 | 172 | 34 | 185 | 6.76e-104 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961290 | A0A396HKI0 | 100.000 | 172 | 0 | 0 | 1 | 172 | 1 | 172 | 5.38e-127 | 374 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0961290 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961290 | MtrunA17_Chr6g0479921 | 100.000 | 172 | 0 | 0 | 1 | 172 | 1 | 172 | 1.04e-130 | 374 |
| Msa0961290 | MtrunA17_Chr8g0375521 | 83.815 | 173 | 25 | 3 | 1 | 172 | 1 | 171 | 1.49e-106 | 311 |
| Msa0961290 | MtrunA17_Chr7g0263941 | 67.123 | 146 | 47 | 1 | 27 | 172 | 32 | 176 | 1.13e-71 | 221 |
| Msa0961290 | MtrunA17_Chr8g0342421 | 67.361 | 144 | 46 | 1 | 29 | 172 | 62 | 204 | 7.99e-71 | 222 |
| Msa0961290 | MtrunA17_Chr1g0181381 | 66.897 | 145 | 46 | 2 | 29 | 172 | 38 | 181 | 1.76e-70 | 221 |
| Msa0961290 | MtrunA17_Chr8g0373541 | 67.586 | 145 | 46 | 1 | 28 | 172 | 32 | 175 | 8.61e-70 | 219 |
| Msa0961290 | MtrunA17_Chr1g0151351 | 63.291 | 158 | 51 | 3 | 21 | 172 | 28 | 184 | 2.75e-69 | 216 |
| Msa0961290 | MtrunA17_Chr2g0330171 | 65.278 | 144 | 49 | 1 | 29 | 172 | 46 | 188 | 4.47e-69 | 216 |
| Msa0961290 | MtrunA17_Chr1g0199101 | 63.889 | 144 | 51 | 1 | 29 | 172 | 47 | 189 | 2.51e-68 | 216 |
| Msa0961290 | MtrunA17_Chr4g0040571 | 65.972 | 144 | 48 | 1 | 29 | 172 | 39 | 181 | 4.01e-68 | 215 |
| Msa0961290 | MtrunA17_Chr1g0191991 | 65.278 | 144 | 49 | 1 | 29 | 172 | 63 | 205 | 5.02e-68 | 215 |
| Msa0961290 | MtrunA17_Chr1g0185121 | 65.517 | 145 | 48 | 2 | 29 | 172 | 40 | 183 | 1.11e-67 | 212 |
| Msa0961290 | MtrunA17_Chr2g0326381 | 64.138 | 145 | 50 | 2 | 29 | 172 | 32 | 175 | 4.47e-67 | 210 |
| Msa0961290 | MtrunA17_Chr1g0210821 | 63.121 | 141 | 51 | 1 | 32 | 172 | 47 | 186 | 1.52e-66 | 212 |
| Msa0961290 | MtrunA17_Chr4g0029521 | 57.143 | 175 | 67 | 3 | 5 | 172 | 8 | 181 | 1.78e-66 | 210 |
| Msa0961290 | MtrunA17_Chr1g0162971 | 61.111 | 144 | 55 | 1 | 29 | 172 | 41 | 183 | 3.02e-66 | 208 |
| Msa0961290 | MtrunA17_Chr1g0163001 | 63.194 | 144 | 52 | 1 | 29 | 172 | 43 | 185 | 3.73e-66 | 210 |
| Msa0961290 | MtrunA17_Chr7g0268961 | 67.164 | 134 | 43 | 1 | 39 | 172 | 32 | 164 | 3.39e-65 | 207 |
| Msa0961290 | MtrunA17_Chr3g0141431 | 62.329 | 146 | 53 | 2 | 28 | 172 | 21 | 165 | 2.20e-64 | 202 |
| Msa0961290 | MtrunA17_Chr2g0324991 | 67.424 | 132 | 42 | 1 | 40 | 171 | 3 | 133 | 4.40e-64 | 193 |
| Msa0961290 | MtrunA17_Chr3g0123941 | 39.041 | 146 | 80 | 4 | 35 | 172 | 114 | 258 | 8.00e-21 | 87.4 |
| Msa0961290 | MtrunA17_Chr2g0320341 | 34.228 | 149 | 83 | 5 | 38 | 172 | 224 | 371 | 7.99e-19 | 82.4 |
| Msa0961290 | MtrunA17_Chr1g0200421 | 36.364 | 143 | 76 | 7 | 43 | 172 | 236 | 376 | 4.03e-17 | 77.8 |
| Msa0961290 | MtrunA17_Chr8g0382121 | 35.374 | 147 | 83 | 5 | 37 | 172 | 104 | 249 | 1.84e-16 | 75.1 |
| Msa0961290 | MtrunA17_Chr8g0352011 | 31.783 | 129 | 78 | 5 | 50 | 170 | 171 | 297 | 7.22e-12 | 62.4 |
| Msa0961290 | MtrunA17_Chr2g0321291 | 30.233 | 129 | 80 | 5 | 50 | 170 | 138 | 264 | 2.09e-11 | 60.8 |
| Msa0961290 | MtrunA17_Chr7g0258011 | 30.233 | 129 | 80 | 4 | 50 | 170 | 181 | 307 | 2.91e-11 | 60.8 |
| Msa0961290 | MtrunA17_Chr4g0026521 | 29.457 | 129 | 81 | 5 | 50 | 170 | 123 | 249 | 3.39e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961290 | AT1G68130.1 | 92.763 | 152 | 10 | 1 | 22 | 172 | 34 | 185 | 6.87e-105 | 307 |
| Msa0961290 | AT2G01940.1 | 89.172 | 157 | 12 | 2 | 21 | 172 | 32 | 188 | 2.97e-104 | 306 |
| Msa0961290 | AT1G25250.3 | 86.228 | 167 | 19 | 2 | 8 | 172 | 14 | 178 | 5.33e-103 | 301 |
| Msa0961290 | AT2G01940.3 | 88.816 | 152 | 12 | 2 | 21 | 167 | 32 | 183 | 2.36e-100 | 296 |
| Msa0961290 | AT1G25250.1 | 92.647 | 136 | 8 | 1 | 39 | 172 | 20 | 155 | 2.32e-92 | 273 |
| Msa0961290 | AT5G66730.1 | 64.935 | 154 | 52 | 2 | 20 | 172 | 22 | 174 | 1.16e-68 | 216 |
| Msa0961290 | AT3G50700.1 | 63.946 | 147 | 52 | 1 | 26 | 172 | 31 | 176 | 4.71e-68 | 214 |
| Msa0961290 | AT2G02080.1 | 62.500 | 144 | 53 | 1 | 29 | 172 | 54 | 196 | 1.19e-67 | 214 |
| Msa0961290 | AT2G02080.4 | 62.500 | 144 | 53 | 1 | 29 | 172 | 54 | 196 | 1.19e-67 | 214 |
| Msa0961290 | AT2G02080.5 | 62.500 | 144 | 53 | 1 | 29 | 172 | 54 | 196 | 1.19e-67 | 214 |
| Msa0961290 | AT2G02080.3 | 62.500 | 144 | 53 | 1 | 29 | 172 | 54 | 196 | 1.19e-67 | 214 |
| Msa0961290 | AT1G55110.3 | 64.865 | 148 | 50 | 2 | 26 | 172 | 60 | 206 | 2.00e-67 | 212 |
| Msa0961290 | AT1G55110.1 | 64.865 | 148 | 50 | 2 | 26 | 172 | 60 | 206 | 2.00e-67 | 212 |
| Msa0961290 | AT1G55110.2 | 64.865 | 148 | 50 | 2 | 26 | 172 | 60 | 206 | 2.00e-67 | 212 |
| Msa0961290 | AT5G03150.1 | 63.758 | 149 | 52 | 2 | 25 | 172 | 49 | 196 | 6.04e-67 | 212 |
| Msa0961290 | AT1G03840.1 | 65.278 | 144 | 49 | 1 | 29 | 172 | 41 | 183 | 2.07e-66 | 211 |
| Msa0961290 | AT1G68130.2 | 93.939 | 99 | 5 | 1 | 75 | 172 | 1 | 99 | 2.44e-66 | 206 |
| Msa0961290 | AT1G14580.1 | 60.417 | 144 | 56 | 1 | 29 | 172 | 53 | 195 | 5.21e-66 | 209 |
| Msa0961290 | AT1G14580.2 | 60.417 | 144 | 56 | 1 | 29 | 172 | 53 | 195 | 5.21e-66 | 209 |
| Msa0961290 | AT1G14580.3 | 60.417 | 144 | 56 | 1 | 29 | 172 | 67 | 209 | 8.27e-66 | 209 |
| Msa0961290 | AT3G13810.6 | 63.758 | 149 | 52 | 2 | 25 | 172 | 47 | 194 | 8.67e-66 | 209 |
| Msa0961290 | AT3G13810.5 | 63.758 | 149 | 52 | 2 | 25 | 172 | 61 | 208 | 9.43e-66 | 209 |
| Msa0961290 | AT3G13810.4 | 63.758 | 149 | 52 | 2 | 25 | 172 | 66 | 213 | 1.04e-65 | 209 |
| Msa0961290 | AT3G13810.1 | 63.758 | 149 | 52 | 2 | 25 | 172 | 66 | 213 | 1.04e-65 | 209 |
| Msa0961290 | AT2G01940.2 | 91.919 | 99 | 7 | 1 | 75 | 172 | 1 | 99 | 1.29e-65 | 204 |
| Msa0961290 | AT4G02670.2 | 65.517 | 145 | 48 | 2 | 29 | 172 | 55 | 198 | 6.89e-65 | 204 |
| Msa0961290 | AT4G02670.1 | 65.517 | 145 | 48 | 2 | 29 | 172 | 53 | 196 | 7.14e-65 | 204 |
| Msa0961290 | AT5G44160.1 | 63.889 | 144 | 51 | 1 | 29 | 172 | 37 | 179 | 1.09e-64 | 205 |
| Msa0961290 | AT2G02070.2 | 61.111 | 144 | 55 | 1 | 29 | 172 | 52 | 194 | 3.44e-64 | 207 |
| Msa0961290 | AT2G02070.1 | 61.111 | 144 | 55 | 1 | 29 | 172 | 52 | 194 | 3.44e-64 | 207 |
| Msa0961290 | AT1G25250.2 | 91.000 | 100 | 7 | 1 | 75 | 172 | 1 | 100 | 4.97e-64 | 199 |
| Msa0961290 | AT3G45260.2 | 61.379 | 145 | 54 | 2 | 29 | 172 | 39 | 182 | 8.15e-64 | 202 |
| Msa0961290 | AT3G45260.1 | 61.379 | 145 | 54 | 2 | 29 | 172 | 39 | 182 | 8.15e-64 | 202 |
| Msa0961290 | AT5G60470.3 | 54.762 | 168 | 69 | 3 | 6 | 172 | 22 | 183 | 1.22e-63 | 202 |
| Msa0961290 | AT5G60470.2 | 54.762 | 168 | 69 | 3 | 6 | 172 | 26 | 187 | 1.27e-63 | 202 |
| Msa0961290 | AT1G03840.2 | 63.889 | 144 | 49 | 2 | 29 | 172 | 41 | 181 | 8.25e-63 | 201 |
| Msa0961290 | AT5G44160.2 | 64.925 | 134 | 46 | 1 | 39 | 172 | 8 | 140 | 2.57e-61 | 196 |
| Msa0961290 | AT3G13810.3 | 65.672 | 134 | 44 | 2 | 40 | 172 | 68 | 200 | 1.53e-60 | 195 |
| Msa0961290 | AT3G13810.2 | 65.672 | 134 | 44 | 2 | 40 | 172 | 82 | 214 | 1.81e-60 | 196 |
| Msa0961290 | AT5G60470.1 | 60.448 | 134 | 51 | 2 | 40 | 172 | 46 | 178 | 2.35e-57 | 186 |
| Msa0961290 | AT2G02080.6 | 61.667 | 120 | 45 | 1 | 53 | 172 | 1 | 119 | 2.92e-55 | 180 |
| Msa0961290 | AT2G02080.2 | 61.667 | 120 | 45 | 1 | 53 | 172 | 1 | 119 | 2.92e-55 | 180 |
| Msa0961290 | AT5G22890.1 | 31.325 | 166 | 94 | 6 | 24 | 172 | 182 | 344 | 2.45e-16 | 75.5 |
| Msa0961290 | AT1G34370.3 | 32.000 | 150 | 85 | 5 | 38 | 172 | 14 | 161 | 3.72e-16 | 74.3 |
| Msa0961290 | AT1G34370.2 | 32.000 | 150 | 85 | 5 | 38 | 172 | 224 | 371 | 1.38e-15 | 73.9 |
| Msa0961290 | AT1G34370.1 | 32.000 | 150 | 85 | 5 | 38 | 172 | 224 | 371 | 1.38e-15 | 73.9 |
| Msa0961290 | AT1G51220.1 | 31.538 | 130 | 77 | 6 | 50 | 170 | 170 | 296 | 4.94e-11 | 60.5 |
Find 35 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTATGCATCTGTAAATTT+TGG | 0.191998 | 6_3:-82515464 | None:intergenic |
| CATAGCTATACTATAGTTAT+AGG | 0.251776 | 6_3:+82514810 | Msa0961290:five_prime_UTR |
| GCACTTCTTCCACTAATAAA+AGG | 0.270599 | 6_3:+82514977 | Msa0961290:CDS |
| CATGATCCTTGTCATGCTTT+AGG | 0.279693 | 6_3:+82515579 | Msa0961290:CDS |
| CTTTCTTTCTATGTTCCTTT+CGG | 0.329565 | 6_3:-82514712 | None:intergenic |
| TTTGGTCCCTTTGGAATCCT+TGG | 0.356941 | 6_3:-82515446 | None:intergenic |
| AGAGACACCACTTCTGCATC+TGG | 0.419684 | 6_3:-82515372 | None:intergenic |
| TCTCTCTTCAATAGCTTCCA+TGG | 0.428102 | 6_3:-82515501 | None:intergenic |
| AGATTGCACTGCATAACCTT+TGG | 0.429152 | 6_3:-82515676 | None:intergenic |
| TGGTGCAAACAAGTTGGTTC+AGG | 0.440705 | 6_3:-82515558 | None:intergenic |
| AGAAGACAAACCTGGTGTTC+CGG | 0.450569 | 6_3:-82515013 | None:intergenic |
| CATGCTTTAGGTGATCTTGT+TGG | 0.466169 | 6_3:+82515591 | Msa0961290:CDS |
| TCAGAAGATGGAAGTGAAGA+TGG | 0.478640 | 6_3:-82514931 | None:intergenic |
| ACATAGTAATCATAAACAAT+GGG | 0.505280 | 6_3:+82515638 | Msa0961290:CDS |
| AGAAGACCTGCCGGAACACC+AGG | 0.508628 | 6_3:+82515003 | Msa0961290:CDS |
| GTATGTGAGATCTGCAACCA+AGG | 0.515942 | 6_3:+82515429 | Msa0961290:CDS |
| GACAAACCTGGTGTTCCGGC+AGG | 0.521897 | 6_3:-82515009 | None:intergenic |
| AACATAGTAATCATAAACAA+TGG | 0.531879 | 6_3:+82515637 | Msa0961290:CDS |
| CTAAAGCATGACAAGGATCA+TGG | 0.532248 | 6_3:-82515578 | None:intergenic |
| ATTTACAGATGCATAGAAGA+AGG | 0.537823 | 6_3:+82515469 | Msa0961290:CDS |
| GATGCATAGAAGAAGGCATA+AGG | 0.546337 | 6_3:+82515476 | Msa0961290:CDS |
| AAAAGGAAAAGAAGACCTGC+CGG | 0.574302 | 6_3:+82514994 | Msa0961290:CDS |
| CTCAAAACTTGTGGTACTAG+AGG | 0.574559 | 6_3:+82515714 | Msa0961290:CDS |
| AGATAAGCTATTAGCTAACA+TGG | 0.580180 | 6_3:-82514908 | None:intergenic |
| AAAGCTCATCTCAAAACTTG+TGG | 0.590538 | 6_3:+82515705 | Msa0961290:CDS |
| AGAGGTCATTCATGTGATTG+TGG | 0.593681 | 6_3:+82515732 | Msa0961290:CDS |
| GTTTGTGAAAGATGTTCCAA+AGG | 0.605307 | 6_3:+82515660 | Msa0961290:CDS |
| CTGCAACCAAGGATTCCAAA+GGG | 0.607708 | 6_3:+82515440 | Msa0961290:CDS |
| GGATCATGGTGCAAACAAGT+TGG | 0.608116 | 6_3:-82515564 | None:intergenic |
| GAAGAAGGCATAAGGTACCA+TGG | 0.614434 | 6_3:+82515484 | Msa0961290:CDS |
| AATAGATCCAGATGCAGAAG+TGG | 0.615906 | 6_3:+82515365 | Msa0961290:intron |
| TCTGCAACCAAGGATTCCAA+AGG | 0.641443 | 6_3:+82515439 | Msa0961290:CDS |
| AAAGCTGAGAGGATACCGAA+AGG | 0.672530 | 6_3:+82514697 | Msa0961290:five_prime_UTR |
| AGATCACCTAAAGCATGACA+AGG | 0.685132 | 6_3:-82515585 | None:intergenic |
| CAAGTTAAAAGAAAGCTGAG+AGG | 0.686957 | 6_3:+82514686 | Msa0961290:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTTTTTTTAAATA+TGG | + | chr6_3:82515225-82515244 | Msa0961290:intron | 0.0% |
| !!! | TTATTTATTTTTTTTAAATA+TGG | + | chr6_3:82515225-82515244 | Msa0961290:intron | 0.0% |
| !!! | AAATTGTTCTTTATTTTGTT+TGG | + | chr6_3:82515337-82515356 | Msa0961290:intron | 15.0% |
| !!! | AAATTGTTCTTTATTTTGTT+TGG | + | chr6_3:82515337-82515356 | Msa0961290:intron | 15.0% |
| !! | AAAAAACATGATTCAAGAAT+TGG | - | chr6_3:82515126-82515145 | None:intergenic | 20.0% |
| !!! | ATCATGTTTTTTTGTTGTAT+TGG | + | chr6_3:82515134-82515153 | Msa0961290:intron | 20.0% |
| !! | AACATAGTAATCATAAACAA+TGG | + | chr6_3:82515637-82515656 | Msa0961290:CDS | 20.0% |
| !! | ACATAGTAATCATAAACAAT+GGG | + | chr6_3:82515638-82515657 | Msa0961290:CDS | 20.0% |
| !! | AAAAAACATGATTCAAGAAT+TGG | - | chr6_3:82515126-82515145 | None:intergenic | 20.0% |
| !!! | ATCATGTTTTTTTGTTGTAT+TGG | + | chr6_3:82515134-82515153 | Msa0961290:intron | 20.0% |
| !! | AACATAGTAATCATAAACAA+TGG | + | chr6_3:82515637-82515656 | Msa0961290:CDS | 20.0% |
| !! | ACATAGTAATCATAAACAAT+GGG | + | chr6_3:82515638-82515657 | Msa0961290:CDS | 20.0% |
| !! | TATAGTATAGCTATGTTTTG+AGG | - | chr6_3:82514805-82514824 | None:intergenic | 25.0% |
| ! | CATAGCTATACTATAGTTAT+AGG | + | chr6_3:82514810-82514829 | Msa0961290:five_prime_UTR | 25.0% |
| !! | TCTTCTTTTCCTTTTATTAG+TGG | - | chr6_3:82514989-82515008 | None:intergenic | 25.0% |
| !!! | GTTCTTTATTTTGTTTGGTT+TGG | + | chr6_3:82515342-82515361 | Msa0961290:intron | 25.0% |
| !! | TTCTATGCATCTGTAAATTT+TGG | - | chr6_3:82515467-82515486 | None:intergenic | 25.0% |
| !! | AAAACTCTTTTTCTAACAAC+TGG | - | chr6_3:82515531-82515550 | None:intergenic | 25.0% |
| !! | TATAGTATAGCTATGTTTTG+AGG | - | chr6_3:82514805-82514824 | None:intergenic | 25.0% |
| ! | CATAGCTATACTATAGTTAT+AGG | + | chr6_3:82514810-82514829 | Msa0961290:five_prime_UTR | 25.0% |
| !! | TCTTCTTTTCCTTTTATTAG+TGG | - | chr6_3:82514989-82515008 | None:intergenic | 25.0% |
| !!! | GTTCTTTATTTTGTTTGGTT+TGG | + | chr6_3:82515342-82515361 | Msa0961290:intron | 25.0% |
| !! | TTCTATGCATCTGTAAATTT+TGG | - | chr6_3:82515467-82515486 | None:intergenic | 25.0% |
| !! | AAAACTCTTTTTCTAACAAC+TGG | - | chr6_3:82515531-82515550 | None:intergenic | 25.0% |
| CTTTCTTTCTATGTTCCTTT+CGG | - | chr6_3:82514715-82514734 | None:intergenic | 30.0% | |
| AGATAAGCTATTAGCTAACA+TGG | - | chr6_3:82514911-82514930 | None:intergenic | 30.0% | |
| ! | CCATTTTCATTGCAAGAAAA+AGG | - | chr6_3:82514958-82514977 | None:intergenic | 30.0% |
| ! | CCTTTTTCTTGCAATGAAAA+TGG | + | chr6_3:82514955-82514974 | Msa0961290:CDS | 30.0% |
| AAAAAGAAAGAGGATTTAGG+AGG | - | chr6_3:82515042-82515061 | None:intergenic | 30.0% | |
| ! | TCTGATTCCAACAATGTTTT+TGG | - | chr6_3:82515402-82515421 | None:intergenic | 30.0% |
| ATTTACAGATGCATAGAAGA+AGG | + | chr6_3:82515469-82515488 | Msa0961290:CDS | 30.0% | |
| CTTTCTTTCTATGTTCCTTT+CGG | - | chr6_3:82514715-82514734 | None:intergenic | 30.0% | |
| AGATAAGCTATTAGCTAACA+TGG | - | chr6_3:82514911-82514930 | None:intergenic | 30.0% | |
| ! | CCATTTTCATTGCAAGAAAA+AGG | - | chr6_3:82514958-82514977 | None:intergenic | 30.0% |
| ! | CCTTTTTCTTGCAATGAAAA+TGG | + | chr6_3:82514955-82514974 | Msa0961290:CDS | 30.0% |
| AAAAAGAAAGAGGATTTAGG+AGG | - | chr6_3:82515042-82515061 | None:intergenic | 30.0% | |
| ! | TCTGATTCCAACAATGTTTT+TGG | - | chr6_3:82515402-82515421 | None:intergenic | 30.0% |
| ATTTACAGATGCATAGAAGA+AGG | + | chr6_3:82515469-82515488 | Msa0961290:CDS | 30.0% | |
| CAAGTTAAAAGAAAGCTGAG+AGG | + | chr6_3:82514686-82514705 | Msa0961290:five_prime_UTR | 35.0% | |
| GCACTTCTTCCACTAATAAA+AGG | + | chr6_3:82514977-82514996 | Msa0961290:CDS | 35.0% | |
| GCGAAAAAGAAAGAGGATTT+AGG | - | chr6_3:82515045-82515064 | None:intergenic | 35.0% | |
| ! | GTTAGAGTTTAGAAGTACGA+AGG | - | chr6_3:82515082-82515101 | None:intergenic | 35.0% |
| ! | GTTGAGATTTTCTCTAACAC+TGG | - | chr6_3:82515104-82515123 | None:intergenic | 35.0% |
| TCTCTCACCAAAAACATTGT+TGG | + | chr6_3:82515392-82515411 | Msa0961290:CDS | 35.0% | |
| !! | TCTGTAAATTTTGGTCCCTT+TGG | - | chr6_3:82515458-82515477 | None:intergenic | 35.0% |
| GTTTGTGAAAGATGTTCCAA+AGG | + | chr6_3:82515660-82515679 | Msa0961290:CDS | 35.0% | |
| AAAGCTCATCTCAAAACTTG+TGG | + | chr6_3:82515705-82515724 | Msa0961290:CDS | 35.0% | |
| CAAGTTAAAAGAAAGCTGAG+AGG | + | chr6_3:82514686-82514705 | Msa0961290:five_prime_UTR | 35.0% | |
| GCACTTCTTCCACTAATAAA+AGG | + | chr6_3:82514977-82514996 | Msa0961290:CDS | 35.0% | |
| GCGAAAAAGAAAGAGGATTT+AGG | - | chr6_3:82515045-82515064 | None:intergenic | 35.0% | |
| ! | GTTAGAGTTTAGAAGTACGA+AGG | - | chr6_3:82515082-82515101 | None:intergenic | 35.0% |
| ! | GTTGAGATTTTCTCTAACAC+TGG | - | chr6_3:82515104-82515123 | None:intergenic | 35.0% |
| TCTCTCACCAAAAACATTGT+TGG | + | chr6_3:82515392-82515411 | Msa0961290:CDS | 35.0% | |
| !! | TCTGTAAATTTTGGTCCCTT+TGG | - | chr6_3:82515458-82515477 | None:intergenic | 35.0% |
| GTTTGTGAAAGATGTTCCAA+AGG | + | chr6_3:82515660-82515679 | Msa0961290:CDS | 35.0% | |
| AAAGCTCATCTCAAAACTTG+TGG | + | chr6_3:82515705-82515724 | Msa0961290:CDS | 35.0% | |
| TCAGAAGATGGAAGTGAAGA+TGG | - | chr6_3:82514934-82514953 | None:intergenic | 40.0% | |
| CAAGAAAAAGGCTCAGAAGA+TGG | - | chr6_3:82514946-82514965 | None:intergenic | 40.0% | |
| AAAAGGAAAAGAAGACCTGC+CGG | + | chr6_3:82514994-82515013 | Msa0961290:CDS | 40.0% | |
| !! | ATCCTCTTTCTTTTTCGCAC+TGG | + | chr6_3:82515047-82515066 | Msa0961290:intron | 40.0% |
| !! | TCCTCTTTCTTTTTCGCACT+GGG | + | chr6_3:82515048-82515067 | Msa0961290:intron | 40.0% |
| AATAGATCCAGATGCAGAAG+TGG | + | chr6_3:82515365-82515384 | Msa0961290:intron | 40.0% | |
| ! | GATGCATAGAAGAAGGCATA+AGG | + | chr6_3:82515476-82515495 | Msa0961290:CDS | 40.0% |
| TCTCTCTTCAATAGCTTCCA+TGG | - | chr6_3:82515504-82515523 | None:intergenic | 40.0% | |
| CTAAAGCATGACAAGGATCA+TGG | - | chr6_3:82515581-82515600 | None:intergenic | 40.0% | |
| CATGATCCTTGTCATGCTTT+AGG | + | chr6_3:82515579-82515598 | Msa0961290:CDS | 40.0% | |
| AGATCACCTAAAGCATGACA+AGG | - | chr6_3:82515588-82515607 | None:intergenic | 40.0% | |
| ! | CATGCTTTAGGTGATCTTGT+TGG | + | chr6_3:82515591-82515610 | Msa0961290:CDS | 40.0% |
| AGATTGCACTGCATAACCTT+TGG | - | chr6_3:82515679-82515698 | None:intergenic | 40.0% | |
| CTCAAAACTTGTGGTACTAG+AGG | + | chr6_3:82515714-82515733 | Msa0961290:CDS | 40.0% | |
| AGAGGTCATTCATGTGATTG+TGG | + | chr6_3:82515732-82515751 | Msa0961290:CDS | 40.0% | |
| ! | ATTGTGGTCGTGTTTTCTCA+AGG | + | chr6_3:82515748-82515767 | Msa0961290:CDS | 40.0% |
| TCAGAAGATGGAAGTGAAGA+TGG | - | chr6_3:82514934-82514953 | None:intergenic | 40.0% | |
| CAAGAAAAAGGCTCAGAAGA+TGG | - | chr6_3:82514946-82514965 | None:intergenic | 40.0% | |
| AAAAGGAAAAGAAGACCTGC+CGG | + | chr6_3:82514994-82515013 | Msa0961290:CDS | 40.0% | |
| !! | ATCCTCTTTCTTTTTCGCAC+TGG | + | chr6_3:82515047-82515066 | Msa0961290:intron | 40.0% |
| !! | TCCTCTTTCTTTTTCGCACT+GGG | + | chr6_3:82515048-82515067 | Msa0961290:intron | 40.0% |
| AATAGATCCAGATGCAGAAG+TGG | + | chr6_3:82515365-82515384 | Msa0961290:intron | 40.0% | |
| ! | GATGCATAGAAGAAGGCATA+AGG | + | chr6_3:82515476-82515495 | Msa0961290:CDS | 40.0% |
| TCTCTCTTCAATAGCTTCCA+TGG | - | chr6_3:82515504-82515523 | None:intergenic | 40.0% | |
| CTAAAGCATGACAAGGATCA+TGG | - | chr6_3:82515581-82515600 | None:intergenic | 40.0% | |
| CATGATCCTTGTCATGCTTT+AGG | + | chr6_3:82515579-82515598 | Msa0961290:CDS | 40.0% | |
| AGATCACCTAAAGCATGACA+AGG | - | chr6_3:82515588-82515607 | None:intergenic | 40.0% | |
| ! | CATGCTTTAGGTGATCTTGT+TGG | + | chr6_3:82515591-82515610 | Msa0961290:CDS | 40.0% |
| AGATTGCACTGCATAACCTT+TGG | - | chr6_3:82515679-82515698 | None:intergenic | 40.0% | |
| CTCAAAACTTGTGGTACTAG+AGG | + | chr6_3:82515714-82515733 | Msa0961290:CDS | 40.0% | |
| AGAGGTCATTCATGTGATTG+TGG | + | chr6_3:82515732-82515751 | Msa0961290:CDS | 40.0% | |
| ! | ATTGTGGTCGTGTTTTCTCA+AGG | + | chr6_3:82515748-82515767 | Msa0961290:CDS | 40.0% |
| AAAGCTGAGAGGATACCGAA+AGG | + | chr6_3:82514697-82514716 | Msa0961290:five_prime_UTR | 45.0% | |
| AGAAGACAAACCTGGTGTTC+CGG | - | chr6_3:82515016-82515035 | None:intergenic | 45.0% | |
| ACCCAGTGCGAAAAAGAAAG+AGG | - | chr6_3:82515052-82515071 | None:intergenic | 45.0% | |
| !! | CTTTCTTTTTCGCACTGGGT+CGG | + | chr6_3:82515052-82515071 | Msa0961290:intron | 45.0% |
| !! | TTTCTTTTTCGCACTGGGTC+GGG | + | chr6_3:82515053-82515072 | Msa0961290:intron | 45.0% |
| GTATGTGAGATCTGCAACCA+AGG | + | chr6_3:82515429-82515448 | Msa0961290:CDS | 45.0% | |
| TCTGCAACCAAGGATTCCAA+AGG | + | chr6_3:82515439-82515458 | Msa0961290:CDS | 45.0% | |
| CTGCAACCAAGGATTCCAAA+GGG | + | chr6_3:82515440-82515459 | Msa0961290:CDS | 45.0% | |
| !! | TTTGGTCCCTTTGGAATCCT+TGG | - | chr6_3:82515449-82515468 | None:intergenic | 45.0% |
| ! | GAAGAAGGCATAAGGTACCA+TGG | + | chr6_3:82515484-82515503 | Msa0961290:CDS | 45.0% |
| !! | TGGTGCAAACAAGTTGGTTC+AGG | - | chr6_3:82515561-82515580 | None:intergenic | 45.0% |
| GGATCATGGTGCAAACAAGT+TGG | - | chr6_3:82515567-82515586 | None:intergenic | 45.0% | |
| AAAGCTGAGAGGATACCGAA+AGG | + | chr6_3:82514697-82514716 | Msa0961290:five_prime_UTR | 45.0% | |
| AGAAGACAAACCTGGTGTTC+CGG | - | chr6_3:82515016-82515035 | None:intergenic | 45.0% | |
| ACCCAGTGCGAAAAAGAAAG+AGG | - | chr6_3:82515052-82515071 | None:intergenic | 45.0% | |
| !! | CTTTCTTTTTCGCACTGGGT+CGG | + | chr6_3:82515052-82515071 | Msa0961290:intron | 45.0% |
| !! | TTTCTTTTTCGCACTGGGTC+GGG | + | chr6_3:82515053-82515072 | Msa0961290:intron | 45.0% |
| GTATGTGAGATCTGCAACCA+AGG | + | chr6_3:82515429-82515448 | Msa0961290:CDS | 45.0% | |
| TCTGCAACCAAGGATTCCAA+AGG | + | chr6_3:82515439-82515458 | Msa0961290:CDS | 45.0% | |
| CTGCAACCAAGGATTCCAAA+GGG | + | chr6_3:82515440-82515459 | Msa0961290:CDS | 45.0% | |
| !! | TTTGGTCCCTTTGGAATCCT+TGG | - | chr6_3:82515449-82515468 | None:intergenic | 45.0% |
| ! | GAAGAAGGCATAAGGTACCA+TGG | + | chr6_3:82515484-82515503 | Msa0961290:CDS | 45.0% |
| !! | TGGTGCAAACAAGTTGGTTC+AGG | - | chr6_3:82515561-82515580 | None:intergenic | 45.0% |
| GGATCATGGTGCAAACAAGT+TGG | - | chr6_3:82515567-82515586 | None:intergenic | 45.0% | |
| GGAGGAGAAGAAGACAAACC+TGG | - | chr6_3:82515024-82515043 | None:intergenic | 50.0% | |
| AGAGACACCACTTCTGCATC+TGG | - | chr6_3:82515375-82515394 | None:intergenic | 50.0% | |
| GGAGGAGAAGAAGACAAACC+TGG | - | chr6_3:82515024-82515043 | None:intergenic | 50.0% | |
| AGAGACACCACTTCTGCATC+TGG | - | chr6_3:82515375-82515394 | None:intergenic | 50.0% | |
| AGAAGACCTGCCGGAACACC+AGG | + | chr6_3:82515003-82515022 | Msa0961290:CDS | 60.0% | |
| GACAAACCTGGTGTTCCGGC+AGG | - | chr6_3:82515012-82515031 | None:intergenic | 60.0% | |
| AGAAGACCTGCCGGAACACC+AGG | + | chr6_3:82515003-82515022 | Msa0961290:CDS | 60.0% | |
| GACAAACCTGGTGTTCCGGC+AGG | - | chr6_3:82515012-82515031 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 82514627 | 82515809 | 82514627 | ID=Msa0961290;Name=Msa0961290 |
| chr6_3 | mRNA | 82514627 | 82515809 | 82514627 | ID=Msa0961290-mRNA-1;Parent=Msa0961290;Name=Msa0961290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=283|1|1|1|1|1|2|36|172 |
| chr6_3 | exon | 82514627 | 82515024 | 82514627 | ID=Msa0961290-mRNA-1:exon:14752;Parent=Msa0961290-mRNA-1 |
| chr6_3 | exon | 82515370 | 82515809 | 82515370 | ID=Msa0961290-mRNA-1:exon:14753;Parent=Msa0961290-mRNA-1 |
| chr6_3 | five_prime_UTR | 82514627 | 82514909 | 82514627 | ID=Msa0961290-mRNA-1:five_prime_utr;Parent=Msa0961290-mRNA-1 |
| chr6_3 | CDS | 82514910 | 82515024 | 82514910 | ID=Msa0961290-mRNA-1:cds;Parent=Msa0961290-mRNA-1 |
| chr6_3 | CDS | 82515370 | 82515773 | 82515370 | ID=Msa0961290-mRNA-1:cds;Parent=Msa0961290-mRNA-1 |
| chr6_3 | three_prime_UTR | 82515774 | 82515809 | 82515774 | ID=Msa0961290-mRNA-1:three_prime_utr;Parent=Msa0961290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
