Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0961320 | sp|Q568K5|NAA40_DANRE | 34.632 | 231 | 125 | 4 | 23 | 251 | 10 | 216 | 3.23e-29 | 113 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0961320 | TR | GNAT |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0961320 | MtrunA17_Chr6g0479551 | 87.732 | 269 | 27 | 1 | 1 | 269 | 1 | 263 | 7.28e-177 | 487 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0961320 | AT1G18335.3 | 50.189 | 265 | 120 | 4 | 3 | 263 | 6 | 262 | 1.33e-76 | 234 |
Msa0961320 | AT1G18335.2 | 50.189 | 265 | 120 | 4 | 3 | 263 | 6 | 262 | 1.33e-76 | 234 |
Msa0961320 | AT1G18335.1 | 50.000 | 264 | 120 | 4 | 3 | 262 | 6 | 261 | 2.93e-76 | 233 |
Find 64 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTACTATCTTTCTTATAT+TGG | 0.159312 | 6_3:-82564643 | Msa0961320:three_prime_UTR |
CTTTGTATATATTGTTTAAT+AGG | 0.217352 | 6_3:+82567606 | None:intergenic |
TGTACATTACCGATTTGTTT+TGG | 0.337734 | 6_3:-82566440 | Msa0961320:CDS |
AGCGTCTCCGAGTTCATTGC+TGG | 0.345011 | 6_3:+82569243 | None:intergenic |
ACCATTGGATAAACTTTAGA+AGG | 0.346375 | 6_3:+82565249 | None:intergenic |
ACCCTTCTTATCAATACTTA+AGG | 0.354468 | 6_3:-82564682 | Msa0961320:three_prime_UTR |
AATTTCGAAGCAGCGATAAA+CGG | 0.367535 | 6_3:+82568994 | None:intergenic |
TCATTAGTTCCATGATATCT+TGG | 0.373519 | 6_3:-82564785 | Msa0961320:intron |
ATTTCGAAGCAGCGATAAAC+GGG | 0.378315 | 6_3:+82568995 | None:intergenic |
TATCGCTGCTTCGAAATTAA+CGG | 0.408605 | 6_3:-82568989 | Msa0961320:intron |
ATTATAGATAATCAATCTAA+TGG | 0.424625 | 6_3:+82565073 | None:intergenic |
CGTGTCCAGGGGAAAGGATT+GGG | 0.426522 | 6_3:-82566370 | Msa0961320:CDS |
CTCCATTCATCTGTAACTGC+TGG | 0.430617 | 6_3:-82564724 | Msa0961320:three_prime_UTR |
ATCCTTAAGTATTGATAAGA+AGG | 0.433255 | 6_3:+82564680 | None:intergenic |
CAAAGCAGCATATAGCATAA+AGG | 0.436019 | 6_3:-82569035 | Msa0961320:CDS |
ACCAAGGGACCACTATCTTC+TGG | 0.440378 | 6_3:+82566469 | None:intergenic |
ATATATACAAAGACTTCTTA+AGG | 0.442688 | 6_3:-82567595 | Msa0961320:intron |
ACAGCTCGAGCCTCGTGTCC+AGG | 0.444598 | 6_3:-82566383 | Msa0961320:CDS |
TCCAGAAGATAGTGGTCCCT+TGG | 0.454435 | 6_3:-82566470 | Msa0961320:CDS |
AAAGGTGAAGCGTATAGAAA+TGG | 0.455948 | 6_3:-82566593 | Msa0961320:CDS |
CTTAACATGGAAGGGCCATA+TGG | 0.467460 | 6_3:-82566637 | Msa0961320:CDS |
GCTTTCCCAATCCTTTCCCC+TGG | 0.468580 | 6_3:+82566365 | None:intergenic |
CCTCTTCTTCCAAAACAAAT+CGG | 0.471830 | 6_3:+82566431 | None:intergenic |
GAAAGATAGTAGAGTTTGCA+AGG | 0.474451 | 6_3:+82564652 | None:intergenic |
AGGATTGGGAAAGCTTCTAA+TGG | 0.474839 | 6_3:-82566356 | Msa0961320:CDS |
ACAAATATATAGCATGCTTC+AGG | 0.475325 | 6_3:+82566565 | None:intergenic |
TTAATACATCCAAGATATCA+TGG | 0.481888 | 6_3:+82564776 | None:intergenic |
GGCGTTGTTGTGAGTTGCAT+TGG | 0.483691 | 6_3:+82569203 | None:intergenic |
CTCTCAGTGTGTTTAACGTC+AGG | 0.484898 | 6_3:-82567651 | Msa0961320:CDS |
CAGCTCGAGCCTCGTGTCCA+GGG | 0.491833 | 6_3:-82566382 | Msa0961320:CDS |
ATCCAGCAGTTACAGATGAA+TGG | 0.494453 | 6_3:+82564722 | None:intergenic |
GAAGATAGTGGTCCCTTGGT+TGG | 0.495248 | 6_3:-82566466 | Msa0961320:CDS |
TCTTGCCACTCAGATCCATA+TGG | 0.513626 | 6_3:+82566622 | None:intergenic |
TATATATTGTTTAATAGGAG+AGG | 0.517646 | 6_3:+82567611 | None:intergenic |
TCGTGTCCAGGGGAAAGGAT+TGG | 0.525244 | 6_3:-82566371 | Msa0961320:CDS |
TGAGTGGCAAGAGGAAGAAA+AGG | 0.525897 | 6_3:-82566611 | Msa0961320:CDS |
ATCTACAGCTTAACATGGAA+GGG | 0.529467 | 6_3:-82566645 | Msa0961320:intron |
TCTTCTGGAAGACTAGTTGA+AGG | 0.533222 | 6_3:+82566484 | None:intergenic |
GAGCCTCGTGTCCAGGGGAA+AGG | 0.535185 | 6_3:-82566376 | Msa0961320:CDS |
ATGCTATATATTTGTGCATG+AGG | 0.542195 | 6_3:-82566557 | Msa0961320:CDS |
AATCTACAGCTTAACATGGA+AGG | 0.544882 | 6_3:-82566646 | Msa0961320:intron |
ACCTTCTAAAGTTTATCCAA+TGG | 0.547249 | 6_3:-82565250 | Msa0961320:intron |
TGTCGTGCTAACTATTCAAA+AGG | 0.560643 | 6_3:-82566041 | Msa0961320:CDS |
TGTGAGTTGCATTGGTTCCA+CGG | 0.567819 | 6_3:+82569211 | None:intergenic |
ACTAGTCTTCCAGAAGATAG+TGG | 0.569548 | 6_3:-82566478 | Msa0961320:CDS |
TGTAAAACCAGCAATGAACT+CGG | 0.592834 | 6_3:-82569250 | Msa0961320:exon |
AATCCTTTCCCCTGGACACG+AGG | 0.597062 | 6_3:+82566373 | None:intergenic |
CATTGGTTCCACGGTCACGT+TGG | 0.600954 | 6_3:+82569220 | None:intergenic |
GTGTGTTTAACGTCAGGACA+TGG | 0.610060 | 6_3:-82567645 | Msa0961320:CDS |
AGCTCGAGCCTCGTGTCCAG+GGG | 0.623716 | 6_3:-82566381 | Msa0961320:CDS |
AGTTCATACACATAAAGTAC+CGG | 0.630714 | 6_3:+82566406 | None:intergenic |
TCCTTAAGTATTGATAAGAA+GGG | 0.634915 | 6_3:+82564681 | None:intergenic |
CAATCTAATGGTGCACCGAG+TGG | 0.640629 | 6_3:+82565085 | None:intergenic |
GAGACGCTCCAACGTGACCG+TGG | 0.649093 | 6_3:-82569228 | Msa0961320:CDS |
ATATGGATCTGAGTGGCAAG+AGG | 0.653218 | 6_3:-82566620 | Msa0961320:CDS |
TCTAAATCTACAGCTTAACA+TGG | 0.653637 | 6_3:-82566650 | Msa0961320:intron |
TAATGTACAAATCCAACCAA+GGG | 0.659606 | 6_3:+82566454 | None:intergenic |
ACGCCGTCGTAACTGAGAGA+AGG | 0.663934 | 6_3:-82569185 | Msa0961320:CDS |
GTAATGTACAAATCCAACCA+AGG | 0.665929 | 6_3:+82566453 | None:intergenic |
AAGAAGGGTCAACAAGAATG+CGG | 0.682033 | 6_3:+82564696 | None:intergenic |
TAACCTTCTCTCAGTTACGA+CGG | 0.694983 | 6_3:+82569182 | None:intergenic |
ATAAACTTTAGAAGGTGACG+TGG | 0.706293 | 6_3:+82565257 | None:intergenic |
GATAAACGGGAAAAGAAGCG+AGG | 0.710792 | 6_3:+82569008 | None:intergenic |
AAGGGCCATATGGATCTGAG+TGG | 0.737924 | 6_3:-82566627 | Msa0961320:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTATGTTGAAATATTAA+TGG | + | chr6_3:82566154-82566173 | None:intergenic | 10.0% |
!! | TTAATATTTCAACATAATTA+TGG | - | chr6_3:82566154-82566173 | Msa0961320:intron | 10.0% |
!! | GAAATACAATTAAATTAATA+AGG | + | chr6_3:82568060-82568079 | None:intergenic | 10.0% |
!! | ATATAATATAGATATATATG+TGG | + | chr6_3:82568186-82568205 | None:intergenic | 10.0% |
!! | ATTAGTTATATGATTATGAT+CGG | - | chr6_3:82564978-82564997 | Msa0961320:intron | 15.0% |
!!! | TAAGTTAGTTTATCTAATAT+CGG | + | chr6_3:82565587-82565606 | None:intergenic | 15.0% |
!! | ATATTAGATAAACTAACTTA+TGG | - | chr6_3:82565587-82565606 | Msa0961320:intron | 15.0% |
!!! | ATTATAGTCTTATAAACTAT+AGG | + | chr6_3:82566129-82566148 | None:intergenic | 15.0% |
!! | CTTTGTATATATTGTTTAAT+AGG | + | chr6_3:82566309-82566328 | None:intergenic | 15.0% |
!! | TGATAGTATAAACAAAAATA+AGG | + | chr6_3:82567147-82567166 | None:intergenic | 15.0% |
!! | TTGTTTATACTATCATAAAT+CGG | - | chr6_3:82567152-82567171 | Msa0961320:intron | 15.0% |
!! | CATATCATTAACATAAAAAA+GGG | + | chr6_3:82567188-82567207 | None:intergenic | 15.0% |
!!! | CAATTTATTGATTTATTTAC+AGG | - | chr6_3:82567776-82567795 | Msa0961320:intron | 15.0% |
!! | TGTAATAGACTTATATATAA+GGG | - | chr6_3:82568207-82568226 | Msa0961320:intron | 15.0% |
!! | ATTCTCATAATAAAAAGTTA+AGG | - | chr6_3:82568405-82568424 | Msa0961320:intron | 15.0% |
!! | ATTATAGATAATCAATCTAA+TGG | + | chr6_3:82568842-82568861 | None:intergenic | 15.0% |
!!! | TTTTTTCAATTAAGACAATG+AGG | - | chr6_3:82565738-82565757 | Msa0961320:intron | 20.0% |
!!! | TTTTTCAATTAAGACAATGA+GGG | - | chr6_3:82565739-82565758 | Msa0961320:intron | 20.0% |
!! | TATATATTGTTTAATAGGAG+AGG | + | chr6_3:82566304-82566323 | None:intergenic | 20.0% |
!! | ATATATACAAAGACTTCTTA+AGG | - | chr6_3:82566317-82566336 | Msa0961320:intron | 20.0% |
!! | TAGTATAAACAAAAATAAGG+TGG | + | chr6_3:82567144-82567163 | None:intergenic | 20.0% |
!! | GCATATCATTAACATAAAAA+AGG | + | chr6_3:82567189-82567208 | None:intergenic | 20.0% |
!!! | TTAGACAAGTTAAGTTTTTT+TGG | + | chr6_3:82567247-82567266 | None:intergenic | 20.0% |
!! | TATCAAAGATCATATTAGAT+GGG | + | chr6_3:82567816-82567835 | None:intergenic | 20.0% |
!! | ATATCAAAGATCATATTAGA+TGG | + | chr6_3:82567817-82567836 | None:intergenic | 20.0% |
!! | GTGTAATAGACTTATATATA+AGG | - | chr6_3:82568206-82568225 | Msa0961320:intron | 20.0% |
!! | GAATTATGAAAGTAGAAAAT+AGG | + | chr6_3:82568480-82568499 | None:intergenic | 20.0% |
!!! | ATAATATTTGATTTTAACCC+AGG | - | chr6_3:82568502-82568521 | Msa0961320:intron | 20.0% |
!! | GAAAAATCTAGAAAGTAATT+AGG | + | chr6_3:82568547-82568566 | None:intergenic | 20.0% |
!!! | TTTCATAACACTTATGATTT+TGG | + | chr6_3:82568701-82568720 | None:intergenic | 20.0% |
!!! | CTATGCACAAATTAATTTTT+CGG | - | chr6_3:82568723-82568742 | Msa0961320:intron | 20.0% |
! | AGAAGTTAGTTACACATTAA+AGG | - | chr6_3:82565019-82565038 | Msa0961320:intron | 25.0% |
!!! | GTTGTTTTCATAAGCTATTT+TGG | - | chr6_3:82565363-82565382 | Msa0961320:intron | 25.0% |
!!! | TTTTTTTCATAAGTTTTCCC+AGG | - | chr6_3:82565432-82565451 | Msa0961320:intron | 25.0% |
! | ATTTATTTGAGCTTATCTAC+TGG | + | chr6_3:82565478-82565497 | None:intergenic | 25.0% |
! | TAGTGTTTGGTAAAAAATAG+CGG | - | chr6_3:82565525-82565544 | Msa0961320:intron | 25.0% |
! | ACTTATAAGCGAACTAATAA+CGG | - | chr6_3:82565552-82565571 | Msa0961320:intron | 25.0% |
! | TAATGTAGTTAGTACAAGTT+GGG | + | chr6_3:82566077-82566096 | None:intergenic | 25.0% |
! | CTAACTACATTACTAATTAC+AGG | - | chr6_3:82566085-82566104 | Msa0961320:intron | 25.0% |
! | TAAGTAACTCTAGTATTGTT+TGG | + | chr6_3:82566378-82566397 | None:intergenic | 25.0% |
! | TAAATAAACACAGACAAGAA+AGG | + | chr6_3:82566762-82566781 | None:intergenic | 25.0% |
!! | TTACAATGAAGATGCAATTT+TGG | + | chr6_3:82566889-82566908 | None:intergenic | 25.0% |
! | AGTTGTTTATACTATCATGA+GGG | - | chr6_3:82566962-82566981 | Msa0961320:intron | 25.0% |
! | NNNNNNNNNACGAGGTTTCA+AGG | + | chr6_3:82567017-82567036 | None:intergenic | 25.0% |
! | TTTCAATGAATAAGCTAACT+CGG | + | chr6_3:82567212-82567231 | None:intergenic | 25.0% |
!! | AGTTAGCTTATTCATTGAAA+TGG | - | chr6_3:82567212-82567231 | Msa0961320:intron | 25.0% |
!! | GTTAGCTTATTCATTGAAAT+GGG | - | chr6_3:82567213-82567232 | Msa0961320:intron | 25.0% |
!! | AACACCATAAAGTACATTTT+GGG | + | chr6_3:82567600-82567619 | None:intergenic | 25.0% |
!! | AAACACCATAAAGTACATTT+TGG | + | chr6_3:82567601-82567620 | None:intergenic | 25.0% |
! | GAATTATTGTTATGTTGCAA+AGG | - | chr6_3:82567655-82567674 | Msa0961320:CDS | 25.0% |
!! | ATTTTTACACTGGTAAACTA+AGG | - | chr6_3:82567912-82567931 | Msa0961320:intron | 25.0% |
! | GAGATAAAAAAATTCAACGA+TGG | + | chr6_3:82567959-82567978 | None:intergenic | 25.0% |
! | TCAAGTTTGATATGAATGAA+AGG | - | chr6_3:82567995-82568014 | Msa0961320:intron | 25.0% |
! | CAAGTTTGATATGAATGAAA+GGG | - | chr6_3:82567996-82568015 | Msa0961320:intron | 25.0% |
!!! | ATATTTTCTGGAATGCATTA+AGG | + | chr6_3:82568085-82568104 | None:intergenic | 25.0% |
!! | AAAATCAGACACATATTTTC+TGG | + | chr6_3:82568097-82568116 | None:intergenic | 25.0% |
!!! | TCTTTTTTTGTAGACATATG+CGG | + | chr6_3:82568137-82568156 | None:intergenic | 25.0% |
! | ACGAAGACTAAACATAAAAA+GGG | + | chr6_3:82568590-82568609 | None:intergenic | 25.0% |
! | AACGAAGACTAAACATAAAA+AGG | + | chr6_3:82568591-82568610 | None:intergenic | 25.0% |
!! | ATAACACTTATGATTTTGGA+GGG | + | chr6_3:82568697-82568716 | None:intergenic | 25.0% |
!!! | TGAAGCTAAAACTATTTTTG+AGG | - | chr6_3:82568800-82568819 | Msa0961320:intron | 25.0% |
! | AATTTCATAAAACCTCTTCT+AGG | - | chr6_3:82568872-82568891 | Msa0961320:intron | 25.0% |
!! | TACATTTTTCTTACTCTAGA+CGG | - | chr6_3:82569016-82569035 | Msa0961320:CDS | 25.0% |
! | TATCATGGAACTAATGAAAA+AGG | + | chr6_3:82569124-82569143 | None:intergenic | 25.0% |
! | TTAATACATCCAAGATATCA+TGG | + | chr6_3:82569139-82569158 | None:intergenic | 25.0% |
!!! | TCCTTAAGTATTGATAAGAA+GGG | + | chr6_3:82569234-82569253 | None:intergenic | 25.0% |
!!! | ATCCTTAAGTATTGATAAGA+AGG | + | chr6_3:82569235-82569254 | None:intergenic | 25.0% |
! | CTCTACTATCTTTCTTATAT+TGG | - | chr6_3:82569269-82569288 | Msa0961320:five_prime_UTR | 25.0% |
TTCAAAAAAACTCGTGAATG+AGG | + | chr6_3:82564795-82564814 | None:intergenic | 30.0% | |
GCATTTAACAAACTGAAAAG+CGG | + | chr6_3:82564952-82564971 | None:intergenic | 30.0% | |
TCAAATAAACCAATCCAAAC+AGG | + | chr6_3:82565045-82565064 | None:intergenic | 30.0% | |
! | AAGCTATATTGGAGTACTTA+TGG | + | chr6_3:82565129-82565148 | None:intergenic | 30.0% |
AAGTACTCCAATATAGCTTA+CGG | - | chr6_3:82565130-82565149 | Msa0961320:CDS | 30.0% | |
TGTGATATAAGCTGCAAATA+AGG | - | chr6_3:82565241-82565260 | Msa0961320:intron | 30.0% | |
! | CTTATGGAATTTGAAGTGTT+TGG | - | chr6_3:82565603-82565622 | Msa0961320:intron | 30.0% |
TAAGCTTGTATGTTTGGTAA+TGG | + | chr6_3:82565882-82565901 | None:intergenic | 30.0% | |
AGCAAATAAGCTTGTATGTT+TGG | + | chr6_3:82565888-82565907 | None:intergenic | 30.0% | |
! | AGTTAGACACTCATCATTTT+AGG | + | chr6_3:82565957-82565976 | None:intergenic | 30.0% |
! | AAGTTTGTTCGTTGAATTAG+CGG | + | chr6_3:82566001-82566020 | None:intergenic | 30.0% |
! | TTGGGTGTAGCTTAAATTTT+GGG | + | chr6_3:82566059-82566078 | None:intergenic | 30.0% |
GTAATGTAGTTAGTACAAGT+TGG | + | chr6_3:82566078-82566097 | None:intergenic | 30.0% | |
!! | CTAATTTTGACCTTATTTCC+AGG | - | chr6_3:82566237-82566256 | Msa0961320:intron | 30.0% |
! | TTGAGTATTGCTCAAATTCA+CGG | - | chr6_3:82566440-82566459 | Msa0961320:CDS | 30.0% |
TTTATCTGTTTGTGTAGAGT+TGG | - | chr6_3:82566778-82566797 | Msa0961320:intron | 30.0% | |
TTATCTGTTTGTGTAGAGTT+GGG | - | chr6_3:82566779-82566798 | Msa0961320:intron | 30.0% | |
TACGACAATCATGAACAAAA+GGG | + | chr6_3:82566848-82566867 | None:intergenic | 30.0% | |
TTACGACAATCATGAACAAA+AGG | + | chr6_3:82566849-82566868 | None:intergenic | 30.0% | |
TTGTTCATGATTGTCGTAAT+TGG | - | chr6_3:82566850-82566869 | Msa0961320:intron | 30.0% | |
CAGTTGTTTATACTATCATG+AGG | - | chr6_3:82566961-82566980 | Msa0961320:intron | 30.0% | |
TTCAATGAATAAGCTAACTC+GGG | + | chr6_3:82567211-82567230 | None:intergenic | 30.0% | |
TCTAAATCTACAGCTTAACA+TGG | - | chr6_3:82567262-82567281 | Msa0961320:intron | 30.0% | |
ACAAATATATAGCATGCTTC+AGG | + | chr6_3:82567350-82567369 | None:intergenic | 30.0% | |
ATGCTATATATTTGTGCATG+AGG | - | chr6_3:82567355-82567374 | Msa0961320:intron | 30.0% | |
TAATGTACAAATCCAACCAA+GGG | + | chr6_3:82567461-82567480 | None:intergenic | 30.0% | |
!!! | TGTACATTACCGATTTGTTT+TGG | - | chr6_3:82567472-82567491 | Msa0961320:intron | 30.0% |
AGTTCATACACATAAAGTAC+CGG | + | chr6_3:82567509-82567528 | None:intergenic | 30.0% | |
TATTTACAGGCTTGAGTTTA+AGG | - | chr6_3:82567789-82567808 | Msa0961320:intron | 30.0% | |
! | TCAGCTATGAATTTTTACAC+TGG | - | chr6_3:82567902-82567921 | Msa0961320:intron | 30.0% |
TAATAATGATTGACATGTCG+AGG | + | chr6_3:82568270-82568289 | None:intergenic | 30.0% | |
TGAACTTGAAGTAAGAACAA+TGG | - | chr6_3:82568355-82568374 | Msa0961320:intron | 30.0% | |
GAACTTGAAGTAAGAACAAT+GGG | - | chr6_3:82568356-82568375 | Msa0961320:intron | 30.0% | |
AAAAAGTTAAGGATCTTTGC+AGG | - | chr6_3:82568416-82568435 | Msa0961320:intron | 30.0% | |
GATATCTTGATAGATAACCT+GGG | + | chr6_3:82568522-82568541 | None:intergenic | 30.0% | |
TGATATCTTGATAGATAACC+TGG | + | chr6_3:82568523-82568542 | None:intergenic | 30.0% | |
AGACTAAACATAAAAAGGGA+GGG | + | chr6_3:82568586-82568605 | None:intergenic | 30.0% | |
AAGACTAAACATAAAAAGGG+AGG | + | chr6_3:82568587-82568606 | None:intergenic | 30.0% | |
!! | ACCTTCTAAAGTTTATCCAA+TGG | - | chr6_3:82568662-82568681 | Msa0961320:intron | 30.0% |
ACCATTGGATAAACTTTAGA+AGG | + | chr6_3:82568666-82568685 | None:intergenic | 30.0% | |
!! | TAACACTTATGATTTTGGAG+GGG | + | chr6_3:82568696-82568715 | None:intergenic | 30.0% |
! | CATAACACTTATGATTTTGG+AGG | + | chr6_3:82568698-82568717 | None:intergenic | 30.0% |
!!! | TATTTTTGAGGTAAACCACT+CGG | - | chr6_3:82568812-82568831 | Msa0961320:intron | 30.0% |
! | TCAAAGGGGAATATGTTTTA+TGG | + | chr6_3:82568935-82568954 | None:intergenic | 30.0% |
ATCTACACAAATAGCTCAAA+GGG | + | chr6_3:82568950-82568969 | None:intergenic | 30.0% | |
GCTATTTGTGTAGATCATAT+CGG | - | chr6_3:82568955-82568974 | Msa0961320:intron | 30.0% | |
TCATTAGTTCCATGATATCT+TGG | - | chr6_3:82569127-82569146 | Msa0961320:intron | 30.0% | |
ACCCTTCTTATCAATACTTA+AGG | - | chr6_3:82569230-82569249 | Msa0961320:CDS | 30.0% | |
TGTAAAACCAGCAATGAACT+CGG | - | chr6_3:82564662-82564681 | Msa0961320:three_prime_UTR | 35.0% | |
CAAAGCAGCATATAGCATAA+AGG | - | chr6_3:82564877-82564896 | Msa0961320:intron | 35.0% | |
AATTTCGAAGCAGCGATAAA+CGG | + | chr6_3:82564921-82564940 | None:intergenic | 35.0% | |
TATCGCTGCTTCGAAATTAA+CGG | - | chr6_3:82564923-82564942 | Msa0961320:intron | 35.0% | |
TTACACATTAAAGGCCTGTT+TGG | - | chr6_3:82565028-82565047 | Msa0961320:intron | 35.0% | |
!! | TGGATTGGTTTATTTGAGCT+TGG | - | chr6_3:82565048-82565067 | Msa0961320:intron | 35.0% |
!! | GGATTGGTTTATTTGAGCTT+GGG | - | chr6_3:82565049-82565068 | Msa0961320:intron | 35.0% |
! | GTTGTTTCCGTAAGCTATAT+TGG | + | chr6_3:82565140-82565159 | None:intergenic | 35.0% |
ATAAGCTGTTTATCCAGACA+GGG | + | chr6_3:82565291-82565310 | None:intergenic | 35.0% | |
AATAAGCTGTTTATCCAGAC+AGG | + | chr6_3:82565292-82565311 | None:intergenic | 35.0% | |
AAGCACTTATGATATTGCCT+GGG | + | chr6_3:82565452-82565471 | None:intergenic | 35.0% | |
TAAGCACTTATGATATTGCC+TGG | + | chr6_3:82565453-82565472 | None:intergenic | 35.0% | |
CAAACACTAACAAAGCGTAA+TGG | + | chr6_3:82565514-82565533 | None:intergenic | 35.0% | |
! | CATTACGCTTTGTTAGTGTT+TGG | - | chr6_3:82565512-82565531 | Msa0961320:intron | 35.0% |
!! | AAGCGAACTAATAACGGATA+AGG | - | chr6_3:82565558-82565577 | Msa0961320:intron | 35.0% |
! | TGGGTGTAGCTTAAATTTTG+GGG | + | chr6_3:82566058-82566077 | None:intergenic | 35.0% |
! | GTTGGGTGTAGCTTAAATTT+TGG | + | chr6_3:82566060-82566079 | None:intergenic | 35.0% |
! | GTTTTCCAATAATGCAATGC+TGG | + | chr6_3:82566685-82566704 | None:intergenic | 35.0% |
AGCTTATTCATTGAAATGGG+TGG | - | chr6_3:82567216-82567235 | Msa0961320:intron | 35.0% | |
GCTTATTCATTGAAATGGGT+GGG | - | chr6_3:82567217-82567236 | Msa0961320:intron | 35.0% | |
AATCTACAGCTTAACATGGA+AGG | - | chr6_3:82567266-82567285 | Msa0961320:intron | 35.0% | |
ATCTACAGCTTAACATGGAA+GGG | - | chr6_3:82567267-82567286 | Msa0961320:intron | 35.0% | |
AAAGGTGAAGCGTATAGAAA+TGG | - | chr6_3:82567319-82567338 | Msa0961320:intron | 35.0% | |
GTAATGTACAAATCCAACCA+AGG | + | chr6_3:82567462-82567481 | None:intergenic | 35.0% | |
CCTCTTCTTCCAAAACAAAT+CGG | + | chr6_3:82567484-82567503 | None:intergenic | 35.0% | |
ATCGCCCAAAATGTACTTTA+TGG | - | chr6_3:82567593-82567612 | Msa0961320:intron | 35.0% | |
AAGGACACAACTTATAGTCT+AGG | - | chr6_3:82567674-82567693 | Msa0961320:intron | 35.0% | |
AGGACACAACTTATAGTCTA+GGG | - | chr6_3:82567675-82567694 | Msa0961320:intron | 35.0% | |
! | ACTTTTCTTGTAGAACTGCA+TGG | - | chr6_3:82567844-82567863 | Msa0961320:intron | 35.0% |
! | CTTTTCTTGTAGAACTGCAT+GGG | - | chr6_3:82567845-82567864 | Msa0961320:intron | 35.0% |
TGTCGTGCTAACTATTCAAA+AGG | - | chr6_3:82567871-82567890 | Msa0961320:intron | 35.0% | |
GGCTTATACGAAAGCAATTA+GGG | + | chr6_3:82568039-82568058 | None:intergenic | 35.0% | |
AGGCTTATACGAAAGCAATT+AGG | + | chr6_3:82568040-82568059 | None:intergenic | 35.0% | |
! | ATATGTGTCTGATTTTGAGC+AGG | - | chr6_3:82568101-82568120 | Msa0961320:intron | 35.0% |
CAAATAACCACATGATGCTA+GGG | + | chr6_3:82568241-82568260 | None:intergenic | 35.0% | |
GACTAAACATAAAAAGGGAG+GGG | + | chr6_3:82568585-82568604 | None:intergenic | 35.0% | |
! | ATAAACTTTAGAAGGTGACG+TGG | + | chr6_3:82568658-82568677 | None:intergenic | 35.0% |
!! | AACACTTATGATTTTGGAGG+GGG | + | chr6_3:82568695-82568714 | None:intergenic | 35.0% |
AAAACCTCTTCTAGGTTTCA+AGG | - | chr6_3:82568880-82568899 | Msa0961320:intron | 35.0% | |
AAAACCTTGAAACCTAGAAG+AGG | + | chr6_3:82568887-82568906 | None:intergenic | 35.0% | |
TCTACACAAATAGCTCAAAG+GGG | + | chr6_3:82568949-82568968 | None:intergenic | 35.0% | |
GATCTACACAAATAGCTCAA+AGG | + | chr6_3:82568951-82568970 | None:intergenic | 35.0% | |
! | GTTCCATGTTGTAGTACTTT+TGG | - | chr6_3:82569063-82569082 | Msa0961320:CDS | 35.0% |
!! | TTGCCAAAAGTACTACAACA+TGG | + | chr6_3:82569069-82569088 | None:intergenic | 35.0% |
GAAAGATAGTAGAGTTTGCA+AGG | + | chr6_3:82569263-82569282 | None:intergenic | 35.0% | |
TAACCTTCTCTCAGTTACGA+CGG | + | chr6_3:82564733-82564752 | None:intergenic | 40.0% | |
CGTGAATGAGGAAAGTTTAG+AGG | + | chr6_3:82564783-82564802 | None:intergenic | 40.0% | |
CTTTGCGAGAAGCTGAAAAA+CGG | + | chr6_3:82564834-82564853 | None:intergenic | 40.0% | |
ATTTCGAAGCAGCGATAAAC+GGG | + | chr6_3:82564920-82564939 | None:intergenic | 40.0% | |
CATTAAAGGCCTGTTTGGAT+TGG | - | chr6_3:82565033-82565052 | Msa0961320:intron | 40.0% | |
TTTATCCAGACAGGGACTTT+GGG | + | chr6_3:82565283-82565302 | None:intergenic | 40.0% | |
ACCAAACTGCTAACTGATAG+CGG | + | chr6_3:82565920-82565939 | None:intergenic | 40.0% | |
!! | TCATCATTTTAGGCTCTGGT+TGG | + | chr6_3:82565947-82565966 | None:intergenic | 40.0% |
! | ACACTCATCATTTTAGGCTC+TGG | + | chr6_3:82565951-82565970 | None:intergenic | 40.0% |
! | GGGTGTAGCTTAAATTTTGG+GGG | + | chr6_3:82566057-82566076 | None:intergenic | 40.0% |
TGCTCAAATTCACGGATAAG+TGG | - | chr6_3:82566448-82566467 | Msa0961320:CDS | 40.0% | |
TAGATCGTAGTCATAACCCT+AGG | + | chr6_3:82566554-82566573 | None:intergenic | 40.0% | |
GTTATGACTACGATCTACGA+GGG | - | chr6_3:82566557-82566576 | Msa0961320:CDS | 40.0% | |
AAACTGTACCATGACCATGA+GGG | + | chr6_3:82566603-82566622 | None:intergenic | 40.0% | |
TAAACTGTACCATGACCATG+AGG | + | chr6_3:82566604-82566623 | None:intergenic | 40.0% | |
TCATGGTCATGGTACAGTTT+AGG | - | chr6_3:82566603-82566622 | Msa0961320:CDS | 40.0% | |
CATGGTCATGGTACAGTTTA+GGG | - | chr6_3:82566604-82566623 | Msa0961320:CDS | 40.0% | |
ATGGTCATGGTACAGTTTAG+GGG | - | chr6_3:82566605-82566624 | Msa0961320:CDS | 40.0% | |
AGCTTCCAGCATTGCATTAT+TGG | - | chr6_3:82566677-82566696 | Msa0961320:intron | 40.0% | |
GGAAAACTACAACAGTCGTT+CGG | - | chr6_3:82566698-82566717 | Msa0961320:intron | 40.0% | |
! | GTTTGAGATGTAGGCACAAT+TGG | - | chr6_3:82566723-82566742 | Msa0961320:intron | 40.0% |
AACACAGACAAGAAAGGACA+TGG | + | chr6_3:82566756-82566775 | None:intergenic | 40.0% | |
TTTGTGTAGAGTTGGGTTTG+CGG | - | chr6_3:82566786-82566805 | Msa0961320:intron | 40.0% | |
AGATATCTCTCGTGACTCTT+GGG | + | chr6_3:82566816-82566835 | None:intergenic | 40.0% | |
TAGATATCTCTCGTGACTCT+TGG | + | chr6_3:82566817-82566836 | None:intergenic | 40.0% | |
! | TCTTCTGGAAGACTAGTTGA+AGG | + | chr6_3:82567431-82567450 | None:intergenic | 40.0% |
!! | ACTAGTCTTCCAGAAGATAG+TGG | - | chr6_3:82567434-82567453 | Msa0961320:intron | 40.0% |
!!! | CCGATTTGTTTTGGAAGAAG+AGG | - | chr6_3:82567481-82567500 | Msa0961320:intron | 40.0% |
!!! | TGTTTTGGAAGAAGAGGTAC+CGG | - | chr6_3:82567487-82567506 | Msa0961320:intron | 40.0% |
AGGATTGGGAAAGCTTCTAA+TGG | - | chr6_3:82567556-82567575 | Msa0961320:intron | 40.0% | |
TTTGTAGACATATGCGGTTC+AGG | + | chr6_3:82568131-82568150 | None:intergenic | 40.0% | |
ATGTTTACCCTAGCATCATG+TGG | - | chr6_3:82568231-82568250 | Msa0961320:intron | 40.0% | |
GCAAATAACCACATGATGCT+AGG | + | chr6_3:82568242-82568261 | None:intergenic | 40.0% | |
!! | ACACTTATGATTTTGGAGGG+GGG | + | chr6_3:82568694-82568713 | None:intergenic | 40.0% |
TTTCGGTTCTCATATGCAGA+TGG | - | chr6_3:82568740-82568759 | Msa0961320:intron | 40.0% | |
AATTCAGTGCAGAATGAGTG+AGG | + | chr6_3:82568912-82568931 | None:intergenic | 40.0% | |
ATCCAGCAGTTACAGATGAA+TGG | + | chr6_3:82569193-82569212 | None:intergenic | 40.0% | |
AAGAAGGGTCAACAAGAATG+CGG | + | chr6_3:82569219-82569238 | None:intergenic | 40.0% | |
!! | TGTGAGTTGCATTGGTTCCA+CGG | + | chr6_3:82564704-82564723 | None:intergenic | 45.0% |
GAGAAGCTGAAAAACGGAAC+GGG | + | chr6_3:82564828-82564847 | None:intergenic | 45.0% | |
CGAGAAGCTGAAAAACGGAA+CGG | + | chr6_3:82564829-82564848 | None:intergenic | 45.0% | |
GATAAACGGGAAAAGAAGCG+AGG | + | chr6_3:82564907-82564926 | None:intergenic | 45.0% | |
GTTTATCCAGACAGGGACTT+TGG | + | chr6_3:82565284-82565303 | None:intergenic | 45.0% | |
ACAAAGCGTAATGGTCTGCT+TGG | + | chr6_3:82565505-82565524 | None:intergenic | 45.0% | |
TCCGCTATCAGTTAGCAGTT+TGG | - | chr6_3:82565916-82565935 | Msa0961320:intron | 45.0% | |
CACTGAGAGACCTGGAAATA+AGG | + | chr6_3:82566250-82566269 | None:intergenic | 45.0% | |
GTTAAACACACTGAGAGACC+TGG | + | chr6_3:82566258-82566277 | None:intergenic | 45.0% | |
CTCTCAGTGTGTTTAACGTC+AGG | - | chr6_3:82566261-82566280 | Msa0961320:intron | 45.0% | |
GTGTGTTTAACGTCAGGACA+TGG | - | chr6_3:82566267-82566286 | Msa0961320:intron | 45.0% | |
TAGGAATGAGCCATGCTCAA+AGG | + | chr6_3:82566535-82566554 | None:intergenic | 45.0% | |
TTTGAGCATGGCTCATTCCT+AGG | - | chr6_3:82566534-82566553 | Msa0961320:CDS | 45.0% | |
TTGAGCATGGCTCATTCCTA+GGG | - | chr6_3:82566535-82566554 | Msa0961320:CDS | 45.0% | |
GGTTATGACTACGATCTACG+AGG | - | chr6_3:82566556-82566575 | Msa0961320:CDS | 45.0% | |
! | CGTTCGGTTGTTTGAGATGT+AGG | - | chr6_3:82566714-82566733 | Msa0961320:intron | 45.0% |
!! | AAAACCTTGCTGTTGTGCCA+AGG | + | chr6_3:82566992-82567011 | None:intergenic | 45.0% |
CTTAACATGGAAGGGCCATA+TGG | - | chr6_3:82567275-82567294 | Msa0961320:intron | 45.0% | |
TCTTGCCACTCAGATCCATA+TGG | + | chr6_3:82567293-82567312 | None:intergenic | 45.0% | |
ATATGGATCTGAGTGGCAAG+AGG | - | chr6_3:82567292-82567311 | Msa0961320:intron | 45.0% | |
TGAGTGGCAAGAGGAAGAAA+AGG | - | chr6_3:82567301-82567320 | Msa0961320:intron | 45.0% | |
CTCCATTCATCTGTAACTGC+TGG | - | chr6_3:82569188-82569207 | Msa0961320:CDS | 45.0% | |
GGCGTTGTTGTGAGTTGCAT+TGG | + | chr6_3:82564712-82564731 | None:intergenic | 50.0% | |
ACAGGGACTTTGGGCATGTT+TGG | + | chr6_3:82565274-82565293 | None:intergenic | 50.0% | |
ACTCACTATGCTCGAGTGTC+TGG | + | chr6_3:82566474-82566493 | None:intergenic | 50.0% | |
AGACACTCGAGCATAGTGAG+TGG | - | chr6_3:82566473-82566492 | Msa0961320:CDS | 50.0% | |
GATCTGTAAGCGCAACGTAG+TGG | - | chr6_3:82566495-82566514 | Msa0961320:CDS | 50.0% | |
AGAGGTCATGCCTTTGAGCA+TGG | - | chr6_3:82566522-82566541 | Msa0961320:CDS | 50.0% | |
ATCTACGAGGGTTGAGAGTG+CGG | - | chr6_3:82566569-82566588 | Msa0961320:CDS | 50.0% | |
ACTATCATGAGGGCAAGCCT+TGG | - | chr6_3:82566972-82566991 | Msa0961320:intron | 50.0% | |
AAGGGCCATATGGATCTGAG+TGG | - | chr6_3:82567285-82567304 | Msa0961320:intron | 50.0% | |
! | TCCAGAAGATAGTGGTCCCT+TGG | - | chr6_3:82567442-82567461 | Msa0961320:intron | 50.0% |
ACCAAGGGACCACTATCTTC+TGG | + | chr6_3:82567446-82567465 | None:intergenic | 50.0% | |
! | GAAGATAGTGGTCCCTTGGT+TGG | - | chr6_3:82567446-82567465 | Msa0961320:intron | 50.0% |
CAATCTAATGGTGCACCGAG+TGG | + | chr6_3:82568830-82568849 | None:intergenic | 50.0% | |
AGCGTCTCCGAGTTCATTGC+TGG | + | chr6_3:82564672-82564691 | None:intergenic | 55.0% | |
!! | CATTGGTTCCACGGTCACGT+TGG | + | chr6_3:82564695-82564714 | None:intergenic | 55.0% |
ACGCCGTCGTAACTGAGAGA+AGG | - | chr6_3:82564727-82564746 | Msa0961320:three_prime_UTR | 55.0% | |
ACATGCCCAAAGTCCCTGTC+TGG | - | chr6_3:82565275-82565294 | Msa0961320:intron | 55.0% | |
!! | GCGCAACGTAGTGGATTGAG+AGG | - | chr6_3:82566504-82566523 | Msa0961320:CDS | 55.0% |
! | TCTACGAGGGTTGAGAGTGC+GGG | - | chr6_3:82566570-82566589 | Msa0961320:CDS | 55.0% |
CAAGCCTTGGCACAACAGCA+AGG | - | chr6_3:82566985-82567004 | Msa0961320:intron | 55.0% | |
AATCCTTTCCCCTGGACACG+AGG | + | chr6_3:82567542-82567561 | None:intergenic | 55.0% | |
TCGTGTCCAGGGGAAAGGAT+TGG | - | chr6_3:82567541-82567560 | Msa0961320:intron | 55.0% | |
CGTGTCCAGGGGAAAGGATT+GGG | - | chr6_3:82567542-82567561 | Msa0961320:intron | 55.0% | |
GCTTTCCCAATCCTTTCCCC+TGG | + | chr6_3:82567550-82567569 | None:intergenic | 55.0% | |
! | TGGAGGGGGGTACATACCAT+TGG | + | chr6_3:82568681-82568700 | None:intergenic | 55.0% |
! | CTACGAGGGTTGAGAGTGCG+GGG | - | chr6_3:82566571-82566590 | Msa0961320:CDS | 60.0% |
! | TACGAGGGTTGAGAGTGCGG+GGG | - | chr6_3:82566572-82566591 | Msa0961320:CDS | 60.0% |
GGGCAAAGCCCTCATGGTCA+TGG | - | chr6_3:82566592-82566611 | Msa0961320:CDS | 60.0% | |
GAGACGCTCCAACGTGACCG+TGG | - | chr6_3:82564684-82564703 | Msa0961320:three_prime_UTR | 65.0% | |
ACAGCTCGAGCCTCGTGTCC+AGG | - | chr6_3:82567529-82567548 | Msa0961320:intron | 65.0% | |
CAGCTCGAGCCTCGTGTCCA+GGG | - | chr6_3:82567530-82567549 | Msa0961320:intron | 65.0% | |
AGCTCGAGCCTCGTGTCCAG+GGG | - | chr6_3:82567531-82567550 | Msa0961320:intron | 65.0% | |
GAGCCTCGTGTCCAGGGGAA+AGG | - | chr6_3:82567536-82567555 | Msa0961320:intron | 65.0% | |
GTGCGGGGGCAAAGCCCTCA+TGG | - | chr6_3:82566586-82566605 | Msa0961320:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 82564633 | 82569301 | 82564633 | ID=Msa0961320;Name=Msa0961320 |
chr6_3 | mRNA | 82564633 | 82569301 | 82564633 | ID=Msa0961320-mRNA-1;Parent=Msa0961320;Name=Msa0961320-mRNA-1;_AED=0.17;_eAED=0.17;_QI=42|1|1|1|0.85|0.75|8|179|269 |
chr6_3 | exon | 82564633 | 82564797 | 82564633 | ID=Msa0961320-mRNA-1:exon:14781;Parent=Msa0961320-mRNA-1 |
chr6_3 | exon | 82565075 | 82565175 | 82565075 | ID=Msa0961320-mRNA-1:exon:14780;Parent=Msa0961320-mRNA-1 |
chr6_3 | exon | 82565251 | 82565293 | 82565251 | ID=Msa0961320-mRNA-1:exon:14779;Parent=Msa0961320-mRNA-1 |
chr6_3 | exon | 82566001 | 82566077 | 82566001 | ID=Msa0961320-mRNA-1:exon:14778;Parent=Msa0961320-mRNA-1 |
chr6_3 | exon | 82566330 | 82566659 | 82566330 | ID=Msa0961320-mRNA-1:exon:14777;Parent=Msa0961320-mRNA-1 |
chr6_3 | exon | 82567596 | 82567675 | 82567596 | ID=Msa0961320-mRNA-1:exon:14776;Parent=Msa0961320-mRNA-1 |
chr6_3 | exon | 82568990 | 82569092 | 82568990 | ID=Msa0961320-mRNA-1:exon:14775;Parent=Msa0961320-mRNA-1 |
chr6_3 | exon | 82569170 | 82569301 | 82569170 | ID=Msa0961320-mRNA-1:exon:14774;Parent=Msa0961320-mRNA-1 |
chr6_3 | five_prime_UTR | 82569260 | 82569301 | 82569260 | ID=Msa0961320-mRNA-1:five_prime_utr;Parent=Msa0961320-mRNA-1 |
chr6_3 | CDS | 82569170 | 82569259 | 82569170 | ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1 |
chr6_3 | CDS | 82568990 | 82569092 | 82568990 | ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1 |
chr6_3 | CDS | 82567596 | 82567675 | 82567596 | ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1 |
chr6_3 | CDS | 82566330 | 82566659 | 82566330 | ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1 |
chr6_3 | CDS | 82566001 | 82566077 | 82566001 | ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1 |
chr6_3 | CDS | 82565251 | 82565293 | 82565251 | ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1 |
chr6_3 | CDS | 82565089 | 82565175 | 82565089 | ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1 |
chr6_3 | three_prime_UTR | 82565075 | 82565088 | 82565075 | ID=Msa0961320-mRNA-1:three_prime_utr;Parent=Msa0961320-mRNA-1 |
chr6_3 | three_prime_UTR | 82564633 | 82564797 | 82564633 | ID=Msa0961320-mRNA-1:three_prime_utr;Parent=Msa0961320-mRNA-1 |
Gene Sequence |
Protein sequence |