AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0961320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961320 MtrunA17_Chr6g0479551 87.732 269 27 1 1 269 1 263 7.28e-177 487
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961320 AT1G18335.3 50.189 265 120 4 3 263 6 262 1.33e-76 234
Msa0961320 AT1G18335.2 50.189 265 120 4 3 263 6 262 1.33e-76 234
Msa0961320 AT1G18335.1 50.000 264 120 4 3 262 6 261 2.93e-76 233

Find 64 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTACTATCTTTCTTATAT+TGG 0.159312 6_3:-82564643 Msa0961320:three_prime_UTR
CTTTGTATATATTGTTTAAT+AGG 0.217352 6_3:+82567606 None:intergenic
TGTACATTACCGATTTGTTT+TGG 0.337734 6_3:-82566440 Msa0961320:CDS
AGCGTCTCCGAGTTCATTGC+TGG 0.345011 6_3:+82569243 None:intergenic
ACCATTGGATAAACTTTAGA+AGG 0.346375 6_3:+82565249 None:intergenic
ACCCTTCTTATCAATACTTA+AGG 0.354468 6_3:-82564682 Msa0961320:three_prime_UTR
AATTTCGAAGCAGCGATAAA+CGG 0.367535 6_3:+82568994 None:intergenic
TCATTAGTTCCATGATATCT+TGG 0.373519 6_3:-82564785 Msa0961320:intron
ATTTCGAAGCAGCGATAAAC+GGG 0.378315 6_3:+82568995 None:intergenic
TATCGCTGCTTCGAAATTAA+CGG 0.408605 6_3:-82568989 Msa0961320:intron
ATTATAGATAATCAATCTAA+TGG 0.424625 6_3:+82565073 None:intergenic
CGTGTCCAGGGGAAAGGATT+GGG 0.426522 6_3:-82566370 Msa0961320:CDS
CTCCATTCATCTGTAACTGC+TGG 0.430617 6_3:-82564724 Msa0961320:three_prime_UTR
ATCCTTAAGTATTGATAAGA+AGG 0.433255 6_3:+82564680 None:intergenic
CAAAGCAGCATATAGCATAA+AGG 0.436019 6_3:-82569035 Msa0961320:CDS
ACCAAGGGACCACTATCTTC+TGG 0.440378 6_3:+82566469 None:intergenic
ATATATACAAAGACTTCTTA+AGG 0.442688 6_3:-82567595 Msa0961320:intron
ACAGCTCGAGCCTCGTGTCC+AGG 0.444598 6_3:-82566383 Msa0961320:CDS
TCCAGAAGATAGTGGTCCCT+TGG 0.454435 6_3:-82566470 Msa0961320:CDS
AAAGGTGAAGCGTATAGAAA+TGG 0.455948 6_3:-82566593 Msa0961320:CDS
CTTAACATGGAAGGGCCATA+TGG 0.467460 6_3:-82566637 Msa0961320:CDS
GCTTTCCCAATCCTTTCCCC+TGG 0.468580 6_3:+82566365 None:intergenic
CCTCTTCTTCCAAAACAAAT+CGG 0.471830 6_3:+82566431 None:intergenic
GAAAGATAGTAGAGTTTGCA+AGG 0.474451 6_3:+82564652 None:intergenic
AGGATTGGGAAAGCTTCTAA+TGG 0.474839 6_3:-82566356 Msa0961320:CDS
ACAAATATATAGCATGCTTC+AGG 0.475325 6_3:+82566565 None:intergenic
TTAATACATCCAAGATATCA+TGG 0.481888 6_3:+82564776 None:intergenic
GGCGTTGTTGTGAGTTGCAT+TGG 0.483691 6_3:+82569203 None:intergenic
CTCTCAGTGTGTTTAACGTC+AGG 0.484898 6_3:-82567651 Msa0961320:CDS
CAGCTCGAGCCTCGTGTCCA+GGG 0.491833 6_3:-82566382 Msa0961320:CDS
ATCCAGCAGTTACAGATGAA+TGG 0.494453 6_3:+82564722 None:intergenic
GAAGATAGTGGTCCCTTGGT+TGG 0.495248 6_3:-82566466 Msa0961320:CDS
TCTTGCCACTCAGATCCATA+TGG 0.513626 6_3:+82566622 None:intergenic
TATATATTGTTTAATAGGAG+AGG 0.517646 6_3:+82567611 None:intergenic
TCGTGTCCAGGGGAAAGGAT+TGG 0.525244 6_3:-82566371 Msa0961320:CDS
TGAGTGGCAAGAGGAAGAAA+AGG 0.525897 6_3:-82566611 Msa0961320:CDS
ATCTACAGCTTAACATGGAA+GGG 0.529467 6_3:-82566645 Msa0961320:intron
TCTTCTGGAAGACTAGTTGA+AGG 0.533222 6_3:+82566484 None:intergenic
GAGCCTCGTGTCCAGGGGAA+AGG 0.535185 6_3:-82566376 Msa0961320:CDS
ATGCTATATATTTGTGCATG+AGG 0.542195 6_3:-82566557 Msa0961320:CDS
AATCTACAGCTTAACATGGA+AGG 0.544882 6_3:-82566646 Msa0961320:intron
ACCTTCTAAAGTTTATCCAA+TGG 0.547249 6_3:-82565250 Msa0961320:intron
TGTCGTGCTAACTATTCAAA+AGG 0.560643 6_3:-82566041 Msa0961320:CDS
TGTGAGTTGCATTGGTTCCA+CGG 0.567819 6_3:+82569211 None:intergenic
ACTAGTCTTCCAGAAGATAG+TGG 0.569548 6_3:-82566478 Msa0961320:CDS
TGTAAAACCAGCAATGAACT+CGG 0.592834 6_3:-82569250 Msa0961320:exon
AATCCTTTCCCCTGGACACG+AGG 0.597062 6_3:+82566373 None:intergenic
CATTGGTTCCACGGTCACGT+TGG 0.600954 6_3:+82569220 None:intergenic
GTGTGTTTAACGTCAGGACA+TGG 0.610060 6_3:-82567645 Msa0961320:CDS
AGCTCGAGCCTCGTGTCCAG+GGG 0.623716 6_3:-82566381 Msa0961320:CDS
AGTTCATACACATAAAGTAC+CGG 0.630714 6_3:+82566406 None:intergenic
TCCTTAAGTATTGATAAGAA+GGG 0.634915 6_3:+82564681 None:intergenic
CAATCTAATGGTGCACCGAG+TGG 0.640629 6_3:+82565085 None:intergenic
GAGACGCTCCAACGTGACCG+TGG 0.649093 6_3:-82569228 Msa0961320:CDS
ATATGGATCTGAGTGGCAAG+AGG 0.653218 6_3:-82566620 Msa0961320:CDS
TCTAAATCTACAGCTTAACA+TGG 0.653637 6_3:-82566650 Msa0961320:intron
TAATGTACAAATCCAACCAA+GGG 0.659606 6_3:+82566454 None:intergenic
ACGCCGTCGTAACTGAGAGA+AGG 0.663934 6_3:-82569185 Msa0961320:CDS
GTAATGTACAAATCCAACCA+AGG 0.665929 6_3:+82566453 None:intergenic
AAGAAGGGTCAACAAGAATG+CGG 0.682033 6_3:+82564696 None:intergenic
TAACCTTCTCTCAGTTACGA+CGG 0.694983 6_3:+82569182 None:intergenic
ATAAACTTTAGAAGGTGACG+TGG 0.706293 6_3:+82565257 None:intergenic
GATAAACGGGAAAAGAAGCG+AGG 0.710792 6_3:+82569008 None:intergenic
AAGGGCCATATGGATCTGAG+TGG 0.737924 6_3:-82566627 Msa0961320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATGTTGAAATATTAA+TGG + chr6_3:82566154-82566173 None:intergenic 10.0%
!! TTAATATTTCAACATAATTA+TGG - chr6_3:82566154-82566173 Msa0961320:intron 10.0%
!! GAAATACAATTAAATTAATA+AGG + chr6_3:82568060-82568079 None:intergenic 10.0%
!! ATATAATATAGATATATATG+TGG + chr6_3:82568186-82568205 None:intergenic 10.0%
!! ATTAGTTATATGATTATGAT+CGG - chr6_3:82564978-82564997 Msa0961320:intron 15.0%
!!! TAAGTTAGTTTATCTAATAT+CGG + chr6_3:82565587-82565606 None:intergenic 15.0%
!! ATATTAGATAAACTAACTTA+TGG - chr6_3:82565587-82565606 Msa0961320:intron 15.0%
!!! ATTATAGTCTTATAAACTAT+AGG + chr6_3:82566129-82566148 None:intergenic 15.0%
!! CTTTGTATATATTGTTTAAT+AGG + chr6_3:82566309-82566328 None:intergenic 15.0%
!! TGATAGTATAAACAAAAATA+AGG + chr6_3:82567147-82567166 None:intergenic 15.0%
!! TTGTTTATACTATCATAAAT+CGG - chr6_3:82567152-82567171 Msa0961320:intron 15.0%
!! CATATCATTAACATAAAAAA+GGG + chr6_3:82567188-82567207 None:intergenic 15.0%
!!! CAATTTATTGATTTATTTAC+AGG - chr6_3:82567776-82567795 Msa0961320:intron 15.0%
!! TGTAATAGACTTATATATAA+GGG - chr6_3:82568207-82568226 Msa0961320:intron 15.0%
!! ATTCTCATAATAAAAAGTTA+AGG - chr6_3:82568405-82568424 Msa0961320:intron 15.0%
!! ATTATAGATAATCAATCTAA+TGG + chr6_3:82568842-82568861 None:intergenic 15.0%
!!! TTTTTTCAATTAAGACAATG+AGG - chr6_3:82565738-82565757 Msa0961320:intron 20.0%
!!! TTTTTCAATTAAGACAATGA+GGG - chr6_3:82565739-82565758 Msa0961320:intron 20.0%
!! TATATATTGTTTAATAGGAG+AGG + chr6_3:82566304-82566323 None:intergenic 20.0%
!! ATATATACAAAGACTTCTTA+AGG - chr6_3:82566317-82566336 Msa0961320:intron 20.0%
!! TAGTATAAACAAAAATAAGG+TGG + chr6_3:82567144-82567163 None:intergenic 20.0%
!! GCATATCATTAACATAAAAA+AGG + chr6_3:82567189-82567208 None:intergenic 20.0%
!!! TTAGACAAGTTAAGTTTTTT+TGG + chr6_3:82567247-82567266 None:intergenic 20.0%
!! TATCAAAGATCATATTAGAT+GGG + chr6_3:82567816-82567835 None:intergenic 20.0%
!! ATATCAAAGATCATATTAGA+TGG + chr6_3:82567817-82567836 None:intergenic 20.0%
!! GTGTAATAGACTTATATATA+AGG - chr6_3:82568206-82568225 Msa0961320:intron 20.0%
!! GAATTATGAAAGTAGAAAAT+AGG + chr6_3:82568480-82568499 None:intergenic 20.0%
!!! ATAATATTTGATTTTAACCC+AGG - chr6_3:82568502-82568521 Msa0961320:intron 20.0%
!! GAAAAATCTAGAAAGTAATT+AGG + chr6_3:82568547-82568566 None:intergenic 20.0%
!!! TTTCATAACACTTATGATTT+TGG + chr6_3:82568701-82568720 None:intergenic 20.0%
!!! CTATGCACAAATTAATTTTT+CGG - chr6_3:82568723-82568742 Msa0961320:intron 20.0%
! AGAAGTTAGTTACACATTAA+AGG - chr6_3:82565019-82565038 Msa0961320:intron 25.0%
!!! GTTGTTTTCATAAGCTATTT+TGG - chr6_3:82565363-82565382 Msa0961320:intron 25.0%
!!! TTTTTTTCATAAGTTTTCCC+AGG - chr6_3:82565432-82565451 Msa0961320:intron 25.0%
! ATTTATTTGAGCTTATCTAC+TGG + chr6_3:82565478-82565497 None:intergenic 25.0%
! TAGTGTTTGGTAAAAAATAG+CGG - chr6_3:82565525-82565544 Msa0961320:intron 25.0%
! ACTTATAAGCGAACTAATAA+CGG - chr6_3:82565552-82565571 Msa0961320:intron 25.0%
! TAATGTAGTTAGTACAAGTT+GGG + chr6_3:82566077-82566096 None:intergenic 25.0%
! CTAACTACATTACTAATTAC+AGG - chr6_3:82566085-82566104 Msa0961320:intron 25.0%
! TAAGTAACTCTAGTATTGTT+TGG + chr6_3:82566378-82566397 None:intergenic 25.0%
! TAAATAAACACAGACAAGAA+AGG + chr6_3:82566762-82566781 None:intergenic 25.0%
!! TTACAATGAAGATGCAATTT+TGG + chr6_3:82566889-82566908 None:intergenic 25.0%
! AGTTGTTTATACTATCATGA+GGG - chr6_3:82566962-82566981 Msa0961320:intron 25.0%
! NNNNNNNNNACGAGGTTTCA+AGG + chr6_3:82567017-82567036 None:intergenic 25.0%
! TTTCAATGAATAAGCTAACT+CGG + chr6_3:82567212-82567231 None:intergenic 25.0%
!! AGTTAGCTTATTCATTGAAA+TGG - chr6_3:82567212-82567231 Msa0961320:intron 25.0%
!! GTTAGCTTATTCATTGAAAT+GGG - chr6_3:82567213-82567232 Msa0961320:intron 25.0%
!! AACACCATAAAGTACATTTT+GGG + chr6_3:82567600-82567619 None:intergenic 25.0%
!! AAACACCATAAAGTACATTT+TGG + chr6_3:82567601-82567620 None:intergenic 25.0%
! GAATTATTGTTATGTTGCAA+AGG - chr6_3:82567655-82567674 Msa0961320:CDS 25.0%
!! ATTTTTACACTGGTAAACTA+AGG - chr6_3:82567912-82567931 Msa0961320:intron 25.0%
! GAGATAAAAAAATTCAACGA+TGG + chr6_3:82567959-82567978 None:intergenic 25.0%
! TCAAGTTTGATATGAATGAA+AGG - chr6_3:82567995-82568014 Msa0961320:intron 25.0%
! CAAGTTTGATATGAATGAAA+GGG - chr6_3:82567996-82568015 Msa0961320:intron 25.0%
!!! ATATTTTCTGGAATGCATTA+AGG + chr6_3:82568085-82568104 None:intergenic 25.0%
!! AAAATCAGACACATATTTTC+TGG + chr6_3:82568097-82568116 None:intergenic 25.0%
!!! TCTTTTTTTGTAGACATATG+CGG + chr6_3:82568137-82568156 None:intergenic 25.0%
! ACGAAGACTAAACATAAAAA+GGG + chr6_3:82568590-82568609 None:intergenic 25.0%
! AACGAAGACTAAACATAAAA+AGG + chr6_3:82568591-82568610 None:intergenic 25.0%
!! ATAACACTTATGATTTTGGA+GGG + chr6_3:82568697-82568716 None:intergenic 25.0%
!!! TGAAGCTAAAACTATTTTTG+AGG - chr6_3:82568800-82568819 Msa0961320:intron 25.0%
! AATTTCATAAAACCTCTTCT+AGG - chr6_3:82568872-82568891 Msa0961320:intron 25.0%
!! TACATTTTTCTTACTCTAGA+CGG - chr6_3:82569016-82569035 Msa0961320:CDS 25.0%
! TATCATGGAACTAATGAAAA+AGG + chr6_3:82569124-82569143 None:intergenic 25.0%
! TTAATACATCCAAGATATCA+TGG + chr6_3:82569139-82569158 None:intergenic 25.0%
!!! TCCTTAAGTATTGATAAGAA+GGG + chr6_3:82569234-82569253 None:intergenic 25.0%
!!! ATCCTTAAGTATTGATAAGA+AGG + chr6_3:82569235-82569254 None:intergenic 25.0%
! CTCTACTATCTTTCTTATAT+TGG - chr6_3:82569269-82569288 Msa0961320:five_prime_UTR 25.0%
TTCAAAAAAACTCGTGAATG+AGG + chr6_3:82564795-82564814 None:intergenic 30.0%
GCATTTAACAAACTGAAAAG+CGG + chr6_3:82564952-82564971 None:intergenic 30.0%
TCAAATAAACCAATCCAAAC+AGG + chr6_3:82565045-82565064 None:intergenic 30.0%
! AAGCTATATTGGAGTACTTA+TGG + chr6_3:82565129-82565148 None:intergenic 30.0%
AAGTACTCCAATATAGCTTA+CGG - chr6_3:82565130-82565149 Msa0961320:CDS 30.0%
TGTGATATAAGCTGCAAATA+AGG - chr6_3:82565241-82565260 Msa0961320:intron 30.0%
! CTTATGGAATTTGAAGTGTT+TGG - chr6_3:82565603-82565622 Msa0961320:intron 30.0%
TAAGCTTGTATGTTTGGTAA+TGG + chr6_3:82565882-82565901 None:intergenic 30.0%
AGCAAATAAGCTTGTATGTT+TGG + chr6_3:82565888-82565907 None:intergenic 30.0%
! AGTTAGACACTCATCATTTT+AGG + chr6_3:82565957-82565976 None:intergenic 30.0%
! AAGTTTGTTCGTTGAATTAG+CGG + chr6_3:82566001-82566020 None:intergenic 30.0%
! TTGGGTGTAGCTTAAATTTT+GGG + chr6_3:82566059-82566078 None:intergenic 30.0%
GTAATGTAGTTAGTACAAGT+TGG + chr6_3:82566078-82566097 None:intergenic 30.0%
!! CTAATTTTGACCTTATTTCC+AGG - chr6_3:82566237-82566256 Msa0961320:intron 30.0%
! TTGAGTATTGCTCAAATTCA+CGG - chr6_3:82566440-82566459 Msa0961320:CDS 30.0%
TTTATCTGTTTGTGTAGAGT+TGG - chr6_3:82566778-82566797 Msa0961320:intron 30.0%
TTATCTGTTTGTGTAGAGTT+GGG - chr6_3:82566779-82566798 Msa0961320:intron 30.0%
TACGACAATCATGAACAAAA+GGG + chr6_3:82566848-82566867 None:intergenic 30.0%
TTACGACAATCATGAACAAA+AGG + chr6_3:82566849-82566868 None:intergenic 30.0%
TTGTTCATGATTGTCGTAAT+TGG - chr6_3:82566850-82566869 Msa0961320:intron 30.0%
CAGTTGTTTATACTATCATG+AGG - chr6_3:82566961-82566980 Msa0961320:intron 30.0%
TTCAATGAATAAGCTAACTC+GGG + chr6_3:82567211-82567230 None:intergenic 30.0%
TCTAAATCTACAGCTTAACA+TGG - chr6_3:82567262-82567281 Msa0961320:intron 30.0%
ACAAATATATAGCATGCTTC+AGG + chr6_3:82567350-82567369 None:intergenic 30.0%
ATGCTATATATTTGTGCATG+AGG - chr6_3:82567355-82567374 Msa0961320:intron 30.0%
TAATGTACAAATCCAACCAA+GGG + chr6_3:82567461-82567480 None:intergenic 30.0%
!!! TGTACATTACCGATTTGTTT+TGG - chr6_3:82567472-82567491 Msa0961320:intron 30.0%
AGTTCATACACATAAAGTAC+CGG + chr6_3:82567509-82567528 None:intergenic 30.0%
TATTTACAGGCTTGAGTTTA+AGG - chr6_3:82567789-82567808 Msa0961320:intron 30.0%
! TCAGCTATGAATTTTTACAC+TGG - chr6_3:82567902-82567921 Msa0961320:intron 30.0%
TAATAATGATTGACATGTCG+AGG + chr6_3:82568270-82568289 None:intergenic 30.0%
TGAACTTGAAGTAAGAACAA+TGG - chr6_3:82568355-82568374 Msa0961320:intron 30.0%
GAACTTGAAGTAAGAACAAT+GGG - chr6_3:82568356-82568375 Msa0961320:intron 30.0%
AAAAAGTTAAGGATCTTTGC+AGG - chr6_3:82568416-82568435 Msa0961320:intron 30.0%
GATATCTTGATAGATAACCT+GGG + chr6_3:82568522-82568541 None:intergenic 30.0%
TGATATCTTGATAGATAACC+TGG + chr6_3:82568523-82568542 None:intergenic 30.0%
AGACTAAACATAAAAAGGGA+GGG + chr6_3:82568586-82568605 None:intergenic 30.0%
AAGACTAAACATAAAAAGGG+AGG + chr6_3:82568587-82568606 None:intergenic 30.0%
!! ACCTTCTAAAGTTTATCCAA+TGG - chr6_3:82568662-82568681 Msa0961320:intron 30.0%
ACCATTGGATAAACTTTAGA+AGG + chr6_3:82568666-82568685 None:intergenic 30.0%
!! TAACACTTATGATTTTGGAG+GGG + chr6_3:82568696-82568715 None:intergenic 30.0%
! CATAACACTTATGATTTTGG+AGG + chr6_3:82568698-82568717 None:intergenic 30.0%
!!! TATTTTTGAGGTAAACCACT+CGG - chr6_3:82568812-82568831 Msa0961320:intron 30.0%
! TCAAAGGGGAATATGTTTTA+TGG + chr6_3:82568935-82568954 None:intergenic 30.0%
ATCTACACAAATAGCTCAAA+GGG + chr6_3:82568950-82568969 None:intergenic 30.0%
GCTATTTGTGTAGATCATAT+CGG - chr6_3:82568955-82568974 Msa0961320:intron 30.0%
TCATTAGTTCCATGATATCT+TGG - chr6_3:82569127-82569146 Msa0961320:intron 30.0%
ACCCTTCTTATCAATACTTA+AGG - chr6_3:82569230-82569249 Msa0961320:CDS 30.0%
TGTAAAACCAGCAATGAACT+CGG - chr6_3:82564662-82564681 Msa0961320:three_prime_UTR 35.0%
CAAAGCAGCATATAGCATAA+AGG - chr6_3:82564877-82564896 Msa0961320:intron 35.0%
AATTTCGAAGCAGCGATAAA+CGG + chr6_3:82564921-82564940 None:intergenic 35.0%
TATCGCTGCTTCGAAATTAA+CGG - chr6_3:82564923-82564942 Msa0961320:intron 35.0%
TTACACATTAAAGGCCTGTT+TGG - chr6_3:82565028-82565047 Msa0961320:intron 35.0%
!! TGGATTGGTTTATTTGAGCT+TGG - chr6_3:82565048-82565067 Msa0961320:intron 35.0%
!! GGATTGGTTTATTTGAGCTT+GGG - chr6_3:82565049-82565068 Msa0961320:intron 35.0%
! GTTGTTTCCGTAAGCTATAT+TGG + chr6_3:82565140-82565159 None:intergenic 35.0%
ATAAGCTGTTTATCCAGACA+GGG + chr6_3:82565291-82565310 None:intergenic 35.0%
AATAAGCTGTTTATCCAGAC+AGG + chr6_3:82565292-82565311 None:intergenic 35.0%
AAGCACTTATGATATTGCCT+GGG + chr6_3:82565452-82565471 None:intergenic 35.0%
TAAGCACTTATGATATTGCC+TGG + chr6_3:82565453-82565472 None:intergenic 35.0%
CAAACACTAACAAAGCGTAA+TGG + chr6_3:82565514-82565533 None:intergenic 35.0%
! CATTACGCTTTGTTAGTGTT+TGG - chr6_3:82565512-82565531 Msa0961320:intron 35.0%
!! AAGCGAACTAATAACGGATA+AGG - chr6_3:82565558-82565577 Msa0961320:intron 35.0%
! TGGGTGTAGCTTAAATTTTG+GGG + chr6_3:82566058-82566077 None:intergenic 35.0%
! GTTGGGTGTAGCTTAAATTT+TGG + chr6_3:82566060-82566079 None:intergenic 35.0%
! GTTTTCCAATAATGCAATGC+TGG + chr6_3:82566685-82566704 None:intergenic 35.0%
AGCTTATTCATTGAAATGGG+TGG - chr6_3:82567216-82567235 Msa0961320:intron 35.0%
GCTTATTCATTGAAATGGGT+GGG - chr6_3:82567217-82567236 Msa0961320:intron 35.0%
AATCTACAGCTTAACATGGA+AGG - chr6_3:82567266-82567285 Msa0961320:intron 35.0%
ATCTACAGCTTAACATGGAA+GGG - chr6_3:82567267-82567286 Msa0961320:intron 35.0%
AAAGGTGAAGCGTATAGAAA+TGG - chr6_3:82567319-82567338 Msa0961320:intron 35.0%
GTAATGTACAAATCCAACCA+AGG + chr6_3:82567462-82567481 None:intergenic 35.0%
CCTCTTCTTCCAAAACAAAT+CGG + chr6_3:82567484-82567503 None:intergenic 35.0%
ATCGCCCAAAATGTACTTTA+TGG - chr6_3:82567593-82567612 Msa0961320:intron 35.0%
AAGGACACAACTTATAGTCT+AGG - chr6_3:82567674-82567693 Msa0961320:intron 35.0%
AGGACACAACTTATAGTCTA+GGG - chr6_3:82567675-82567694 Msa0961320:intron 35.0%
! ACTTTTCTTGTAGAACTGCA+TGG - chr6_3:82567844-82567863 Msa0961320:intron 35.0%
! CTTTTCTTGTAGAACTGCAT+GGG - chr6_3:82567845-82567864 Msa0961320:intron 35.0%
TGTCGTGCTAACTATTCAAA+AGG - chr6_3:82567871-82567890 Msa0961320:intron 35.0%
GGCTTATACGAAAGCAATTA+GGG + chr6_3:82568039-82568058 None:intergenic 35.0%
AGGCTTATACGAAAGCAATT+AGG + chr6_3:82568040-82568059 None:intergenic 35.0%
! ATATGTGTCTGATTTTGAGC+AGG - chr6_3:82568101-82568120 Msa0961320:intron 35.0%
CAAATAACCACATGATGCTA+GGG + chr6_3:82568241-82568260 None:intergenic 35.0%
GACTAAACATAAAAAGGGAG+GGG + chr6_3:82568585-82568604 None:intergenic 35.0%
! ATAAACTTTAGAAGGTGACG+TGG + chr6_3:82568658-82568677 None:intergenic 35.0%
!! AACACTTATGATTTTGGAGG+GGG + chr6_3:82568695-82568714 None:intergenic 35.0%
AAAACCTCTTCTAGGTTTCA+AGG - chr6_3:82568880-82568899 Msa0961320:intron 35.0%
AAAACCTTGAAACCTAGAAG+AGG + chr6_3:82568887-82568906 None:intergenic 35.0%
TCTACACAAATAGCTCAAAG+GGG + chr6_3:82568949-82568968 None:intergenic 35.0%
GATCTACACAAATAGCTCAA+AGG + chr6_3:82568951-82568970 None:intergenic 35.0%
! GTTCCATGTTGTAGTACTTT+TGG - chr6_3:82569063-82569082 Msa0961320:CDS 35.0%
!! TTGCCAAAAGTACTACAACA+TGG + chr6_3:82569069-82569088 None:intergenic 35.0%
GAAAGATAGTAGAGTTTGCA+AGG + chr6_3:82569263-82569282 None:intergenic 35.0%
TAACCTTCTCTCAGTTACGA+CGG + chr6_3:82564733-82564752 None:intergenic 40.0%
CGTGAATGAGGAAAGTTTAG+AGG + chr6_3:82564783-82564802 None:intergenic 40.0%
CTTTGCGAGAAGCTGAAAAA+CGG + chr6_3:82564834-82564853 None:intergenic 40.0%
ATTTCGAAGCAGCGATAAAC+GGG + chr6_3:82564920-82564939 None:intergenic 40.0%
CATTAAAGGCCTGTTTGGAT+TGG - chr6_3:82565033-82565052 Msa0961320:intron 40.0%
TTTATCCAGACAGGGACTTT+GGG + chr6_3:82565283-82565302 None:intergenic 40.0%
ACCAAACTGCTAACTGATAG+CGG + chr6_3:82565920-82565939 None:intergenic 40.0%
!! TCATCATTTTAGGCTCTGGT+TGG + chr6_3:82565947-82565966 None:intergenic 40.0%
! ACACTCATCATTTTAGGCTC+TGG + chr6_3:82565951-82565970 None:intergenic 40.0%
! GGGTGTAGCTTAAATTTTGG+GGG + chr6_3:82566057-82566076 None:intergenic 40.0%
TGCTCAAATTCACGGATAAG+TGG - chr6_3:82566448-82566467 Msa0961320:CDS 40.0%
TAGATCGTAGTCATAACCCT+AGG + chr6_3:82566554-82566573 None:intergenic 40.0%
GTTATGACTACGATCTACGA+GGG - chr6_3:82566557-82566576 Msa0961320:CDS 40.0%
AAACTGTACCATGACCATGA+GGG + chr6_3:82566603-82566622 None:intergenic 40.0%
TAAACTGTACCATGACCATG+AGG + chr6_3:82566604-82566623 None:intergenic 40.0%
TCATGGTCATGGTACAGTTT+AGG - chr6_3:82566603-82566622 Msa0961320:CDS 40.0%
CATGGTCATGGTACAGTTTA+GGG - chr6_3:82566604-82566623 Msa0961320:CDS 40.0%
ATGGTCATGGTACAGTTTAG+GGG - chr6_3:82566605-82566624 Msa0961320:CDS 40.0%
AGCTTCCAGCATTGCATTAT+TGG - chr6_3:82566677-82566696 Msa0961320:intron 40.0%
GGAAAACTACAACAGTCGTT+CGG - chr6_3:82566698-82566717 Msa0961320:intron 40.0%
! GTTTGAGATGTAGGCACAAT+TGG - chr6_3:82566723-82566742 Msa0961320:intron 40.0%
AACACAGACAAGAAAGGACA+TGG + chr6_3:82566756-82566775 None:intergenic 40.0%
TTTGTGTAGAGTTGGGTTTG+CGG - chr6_3:82566786-82566805 Msa0961320:intron 40.0%
AGATATCTCTCGTGACTCTT+GGG + chr6_3:82566816-82566835 None:intergenic 40.0%
TAGATATCTCTCGTGACTCT+TGG + chr6_3:82566817-82566836 None:intergenic 40.0%
! TCTTCTGGAAGACTAGTTGA+AGG + chr6_3:82567431-82567450 None:intergenic 40.0%
!! ACTAGTCTTCCAGAAGATAG+TGG - chr6_3:82567434-82567453 Msa0961320:intron 40.0%
!!! CCGATTTGTTTTGGAAGAAG+AGG - chr6_3:82567481-82567500 Msa0961320:intron 40.0%
!!! TGTTTTGGAAGAAGAGGTAC+CGG - chr6_3:82567487-82567506 Msa0961320:intron 40.0%
AGGATTGGGAAAGCTTCTAA+TGG - chr6_3:82567556-82567575 Msa0961320:intron 40.0%
TTTGTAGACATATGCGGTTC+AGG + chr6_3:82568131-82568150 None:intergenic 40.0%
ATGTTTACCCTAGCATCATG+TGG - chr6_3:82568231-82568250 Msa0961320:intron 40.0%
GCAAATAACCACATGATGCT+AGG + chr6_3:82568242-82568261 None:intergenic 40.0%
!! ACACTTATGATTTTGGAGGG+GGG + chr6_3:82568694-82568713 None:intergenic 40.0%
TTTCGGTTCTCATATGCAGA+TGG - chr6_3:82568740-82568759 Msa0961320:intron 40.0%
AATTCAGTGCAGAATGAGTG+AGG + chr6_3:82568912-82568931 None:intergenic 40.0%
ATCCAGCAGTTACAGATGAA+TGG + chr6_3:82569193-82569212 None:intergenic 40.0%
AAGAAGGGTCAACAAGAATG+CGG + chr6_3:82569219-82569238 None:intergenic 40.0%
!! TGTGAGTTGCATTGGTTCCA+CGG + chr6_3:82564704-82564723 None:intergenic 45.0%
GAGAAGCTGAAAAACGGAAC+GGG + chr6_3:82564828-82564847 None:intergenic 45.0%
CGAGAAGCTGAAAAACGGAA+CGG + chr6_3:82564829-82564848 None:intergenic 45.0%
GATAAACGGGAAAAGAAGCG+AGG + chr6_3:82564907-82564926 None:intergenic 45.0%
GTTTATCCAGACAGGGACTT+TGG + chr6_3:82565284-82565303 None:intergenic 45.0%
ACAAAGCGTAATGGTCTGCT+TGG + chr6_3:82565505-82565524 None:intergenic 45.0%
TCCGCTATCAGTTAGCAGTT+TGG - chr6_3:82565916-82565935 Msa0961320:intron 45.0%
CACTGAGAGACCTGGAAATA+AGG + chr6_3:82566250-82566269 None:intergenic 45.0%
GTTAAACACACTGAGAGACC+TGG + chr6_3:82566258-82566277 None:intergenic 45.0%
CTCTCAGTGTGTTTAACGTC+AGG - chr6_3:82566261-82566280 Msa0961320:intron 45.0%
GTGTGTTTAACGTCAGGACA+TGG - chr6_3:82566267-82566286 Msa0961320:intron 45.0%
TAGGAATGAGCCATGCTCAA+AGG + chr6_3:82566535-82566554 None:intergenic 45.0%
TTTGAGCATGGCTCATTCCT+AGG - chr6_3:82566534-82566553 Msa0961320:CDS 45.0%
TTGAGCATGGCTCATTCCTA+GGG - chr6_3:82566535-82566554 Msa0961320:CDS 45.0%
GGTTATGACTACGATCTACG+AGG - chr6_3:82566556-82566575 Msa0961320:CDS 45.0%
! CGTTCGGTTGTTTGAGATGT+AGG - chr6_3:82566714-82566733 Msa0961320:intron 45.0%
!! AAAACCTTGCTGTTGTGCCA+AGG + chr6_3:82566992-82567011 None:intergenic 45.0%
CTTAACATGGAAGGGCCATA+TGG - chr6_3:82567275-82567294 Msa0961320:intron 45.0%
TCTTGCCACTCAGATCCATA+TGG + chr6_3:82567293-82567312 None:intergenic 45.0%
ATATGGATCTGAGTGGCAAG+AGG - chr6_3:82567292-82567311 Msa0961320:intron 45.0%
TGAGTGGCAAGAGGAAGAAA+AGG - chr6_3:82567301-82567320 Msa0961320:intron 45.0%
CTCCATTCATCTGTAACTGC+TGG - chr6_3:82569188-82569207 Msa0961320:CDS 45.0%
GGCGTTGTTGTGAGTTGCAT+TGG + chr6_3:82564712-82564731 None:intergenic 50.0%
ACAGGGACTTTGGGCATGTT+TGG + chr6_3:82565274-82565293 None:intergenic 50.0%
ACTCACTATGCTCGAGTGTC+TGG + chr6_3:82566474-82566493 None:intergenic 50.0%
AGACACTCGAGCATAGTGAG+TGG - chr6_3:82566473-82566492 Msa0961320:CDS 50.0%
GATCTGTAAGCGCAACGTAG+TGG - chr6_3:82566495-82566514 Msa0961320:CDS 50.0%
AGAGGTCATGCCTTTGAGCA+TGG - chr6_3:82566522-82566541 Msa0961320:CDS 50.0%
ATCTACGAGGGTTGAGAGTG+CGG - chr6_3:82566569-82566588 Msa0961320:CDS 50.0%
ACTATCATGAGGGCAAGCCT+TGG - chr6_3:82566972-82566991 Msa0961320:intron 50.0%
AAGGGCCATATGGATCTGAG+TGG - chr6_3:82567285-82567304 Msa0961320:intron 50.0%
! TCCAGAAGATAGTGGTCCCT+TGG - chr6_3:82567442-82567461 Msa0961320:intron 50.0%
ACCAAGGGACCACTATCTTC+TGG + chr6_3:82567446-82567465 None:intergenic 50.0%
! GAAGATAGTGGTCCCTTGGT+TGG - chr6_3:82567446-82567465 Msa0961320:intron 50.0%
CAATCTAATGGTGCACCGAG+TGG + chr6_3:82568830-82568849 None:intergenic 50.0%
AGCGTCTCCGAGTTCATTGC+TGG + chr6_3:82564672-82564691 None:intergenic 55.0%
!! CATTGGTTCCACGGTCACGT+TGG + chr6_3:82564695-82564714 None:intergenic 55.0%
ACGCCGTCGTAACTGAGAGA+AGG - chr6_3:82564727-82564746 Msa0961320:three_prime_UTR 55.0%
ACATGCCCAAAGTCCCTGTC+TGG - chr6_3:82565275-82565294 Msa0961320:intron 55.0%
!! GCGCAACGTAGTGGATTGAG+AGG - chr6_3:82566504-82566523 Msa0961320:CDS 55.0%
! TCTACGAGGGTTGAGAGTGC+GGG - chr6_3:82566570-82566589 Msa0961320:CDS 55.0%
CAAGCCTTGGCACAACAGCA+AGG - chr6_3:82566985-82567004 Msa0961320:intron 55.0%
AATCCTTTCCCCTGGACACG+AGG + chr6_3:82567542-82567561 None:intergenic 55.0%
TCGTGTCCAGGGGAAAGGAT+TGG - chr6_3:82567541-82567560 Msa0961320:intron 55.0%
CGTGTCCAGGGGAAAGGATT+GGG - chr6_3:82567542-82567561 Msa0961320:intron 55.0%
GCTTTCCCAATCCTTTCCCC+TGG + chr6_3:82567550-82567569 None:intergenic 55.0%
! TGGAGGGGGGTACATACCAT+TGG + chr6_3:82568681-82568700 None:intergenic 55.0%
! CTACGAGGGTTGAGAGTGCG+GGG - chr6_3:82566571-82566590 Msa0961320:CDS 60.0%
! TACGAGGGTTGAGAGTGCGG+GGG - chr6_3:82566572-82566591 Msa0961320:CDS 60.0%
GGGCAAAGCCCTCATGGTCA+TGG - chr6_3:82566592-82566611 Msa0961320:CDS 60.0%
GAGACGCTCCAACGTGACCG+TGG - chr6_3:82564684-82564703 Msa0961320:three_prime_UTR 65.0%
ACAGCTCGAGCCTCGTGTCC+AGG - chr6_3:82567529-82567548 Msa0961320:intron 65.0%
CAGCTCGAGCCTCGTGTCCA+GGG - chr6_3:82567530-82567549 Msa0961320:intron 65.0%
AGCTCGAGCCTCGTGTCCAG+GGG - chr6_3:82567531-82567550 Msa0961320:intron 65.0%
GAGCCTCGTGTCCAGGGGAA+AGG - chr6_3:82567536-82567555 Msa0961320:intron 65.0%
GTGCGGGGGCAAAGCCCTCA+TGG - chr6_3:82566586-82566605 Msa0961320:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 82564633 82569301 82564633 ID=Msa0961320;Name=Msa0961320
chr6_3 mRNA 82564633 82569301 82564633 ID=Msa0961320-mRNA-1;Parent=Msa0961320;Name=Msa0961320-mRNA-1;_AED=0.17;_eAED=0.17;_QI=42|1|1|1|0.85|0.75|8|179|269
chr6_3 exon 82564633 82564797 82564633 ID=Msa0961320-mRNA-1:exon:14781;Parent=Msa0961320-mRNA-1
chr6_3 exon 82565075 82565175 82565075 ID=Msa0961320-mRNA-1:exon:14780;Parent=Msa0961320-mRNA-1
chr6_3 exon 82565251 82565293 82565251 ID=Msa0961320-mRNA-1:exon:14779;Parent=Msa0961320-mRNA-1
chr6_3 exon 82566001 82566077 82566001 ID=Msa0961320-mRNA-1:exon:14778;Parent=Msa0961320-mRNA-1
chr6_3 exon 82566330 82566659 82566330 ID=Msa0961320-mRNA-1:exon:14777;Parent=Msa0961320-mRNA-1
chr6_3 exon 82567596 82567675 82567596 ID=Msa0961320-mRNA-1:exon:14776;Parent=Msa0961320-mRNA-1
chr6_3 exon 82568990 82569092 82568990 ID=Msa0961320-mRNA-1:exon:14775;Parent=Msa0961320-mRNA-1
chr6_3 exon 82569170 82569301 82569170 ID=Msa0961320-mRNA-1:exon:14774;Parent=Msa0961320-mRNA-1
chr6_3 five_prime_UTR 82569260 82569301 82569260 ID=Msa0961320-mRNA-1:five_prime_utr;Parent=Msa0961320-mRNA-1
chr6_3 CDS 82569170 82569259 82569170 ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1
chr6_3 CDS 82568990 82569092 82568990 ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1
chr6_3 CDS 82567596 82567675 82567596 ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1
chr6_3 CDS 82566330 82566659 82566330 ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1
chr6_3 CDS 82566001 82566077 82566001 ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1
chr6_3 CDS 82565251 82565293 82565251 ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1
chr6_3 CDS 82565089 82565175 82565089 ID=Msa0961320-mRNA-1:cds;Parent=Msa0961320-mRNA-1
chr6_3 three_prime_UTR 82565075 82565088 82565075 ID=Msa0961320-mRNA-1:three_prime_utr;Parent=Msa0961320-mRNA-1
chr6_3 three_prime_UTR 82564633 82564797 82564633 ID=Msa0961320-mRNA-1:three_prime_utr;Parent=Msa0961320-mRNA-1
Gene Sequence

>Msa0961320

ATGAACTCGGAGACGCTCCAACGTGACCGTGGAACCAATGCAACTCACAACAACGCCGTCGTAACTGAGAGAAGGTTAACACGCAGCGAACTTCTCGCAAAGAAGAACGCAAATGAACAACTCATCAAAGCAGCATATAGCATAAAGGATCACCTCGCTTCTTTTCCCGTTTATCGCTGCTTCGAAATTAACGGTCTCTCAGTGTGTTTAACGTCAGGACATGGCACTAAACTTTCCTCTCCTATTAAACAATATATACAAAGACTTCTTAAGCTTAACATGGAAGGGCCATATGGATCTGAGTGGCAAGAGGAAGAAAAGGTGAAGCGTATAGAAATGGTTGATCCTGAAGCATGCTATATATTTGTGCATGAGGTTACTAATGCAAATGCTGACGAGACGACAACAGTGTTGACTGAAGAAGATCCTTCAACTAGTCTTCCAGAAGATAGTGGTCCCTTGGTTGGATTTGTACATTACCGATTTGTTTTGGAAGAAGAGGTACCGGTACTTTATGTGTATGAACTACAGCTCGAGCCTCGTGTCCAGGGGAAAGGATTGGGAAAGCTTCTAATGGAACTTATTGAGCTTATCGCCCAAAATAACTGCATGGGTGCTGTCGTGCTAACTATTCAAAAGGCGAACATATCAGCTATGAATTTTTACACTGGTAAACTAAGATATATCATATCAGCCACGTCACCTTCTAAAGTTTATCCAATGATGGAGAAGAGTTATGAAATTCTTTGCAGAATATTTAATGATGAAGCTAAAACTATTTTTGAGGTAAACCACTCGGTGCACCATTAG

Protein sequence

>Msa0961320

MNSETLQRDRGTNATHNNAVVTERRLTRSELLAKKNANEQLIKAAYSIKDHLASFPVYRCFEINGLSVCLTSGHGTKLSSPIKQYIQRLLKLNMEGPYGSEWQEEEKVKRIEMVDPEACYIFVHEVTNANADETTTVLTEEDPSTSLPEDSGPLVGFVHYRFVLEEEVPVLYVYELQLEPRVQGKGLGKLLMELIELIAQNNCMGAVVLTIQKANISAMNFYTGKLRYIISATSPSKVYPMMEKSYEILCRIFNDEAKTIFEVNHSVHH*