Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961380 | XP_039690980.1 | 74.118 | 255 | 25 | 3 | 9 | 223 | 7 | 260 | 3.51e-127 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961380 | sp|Q568K5|NAA40_DANRE | 36.025 | 161 | 69 | 5 | 55 | 205 | 80 | 216 | 1.02e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961380 | A0A396HG85 | 73.256 | 258 | 25 | 3 | 9 | 223 | 7 | 263 | 5.16e-127 | 369 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0961380 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961380 | MtrunA17_Chr6g0479551 | 73.256 | 258 | 25 | 3 | 9 | 223 | 7 | 263 | 9.94e-131 | 369 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961380 | AT1G18335.3 | 42.339 | 248 | 88 | 5 | 14 | 217 | 26 | 262 | 9.17e-51 | 166 |
| Msa0961380 | AT1G18335.2 | 42.339 | 248 | 88 | 5 | 14 | 217 | 26 | 262 | 9.17e-51 | 166 |
| Msa0961380 | AT1G18335.1 | 42.105 | 247 | 88 | 5 | 14 | 216 | 26 | 261 | 3.06e-50 | 164 |
Find 51 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTCATAAAACCTCTTT+AGG | 0.241175 | 6_3:+82838793 | Msa0961380:three_prime_UTR |
| GGCTCTGTTGTTTCTTGCAT+TGG | 0.341410 | 6_3:-82834365 | None:intergenic |
| ACCATTGGATAAACTTTAGA+AGG | 0.343892 | 6_3:-82838586 | None:intergenic |
| TAAAACCTCTTTAGGTTTCA+AGG | 0.352147 | 6_3:+82838801 | Msa0961380:three_prime_UTR |
| TGTACATTACCGCTTTGTTT+TGG | 0.388601 | 6_3:+82837415 | Msa0961380:CDS |
| CAAATCAGCTTATAGCATAA+AGG | 0.405600 | 6_3:+82834525 | Msa0961380:CDS |
| ATCATAGATAATCAATCTAA+TGG | 0.413463 | 6_3:-82838761 | None:intergenic |
| TCTTGCCACTCAGATCCATA+TGG | 0.415590 | 6_3:-82837233 | None:intergenic |
| CTTAACATGGAAGGCCCATA+TGG | 0.419156 | 6_3:+82837218 | Msa0961380:CDS |
| CGTGTCCAGGGGAAAGGATT+GGG | 0.426522 | 6_3:+82837485 | Msa0961380:CDS |
| ACAGTTCGAGCCTCGTGTCC+AGG | 0.440255 | 6_3:+82837472 | Msa0961380:intron |
| ACAAATATATAGCGTGCTTC+AGG | 0.453405 | 6_3:-82837290 | None:intergenic |
| TCTTCTTGACGACTAGTTGA+AGG | 0.460099 | 6_3:-82837371 | None:intergenic |
| AAAGGTGAAGCGTAGAGAAA+TGG | 0.460189 | 6_3:+82837262 | Msa0961380:CDS |
| GCTTTCCCAATCCTTTCCCC+TGG | 0.468580 | 6_3:-82837490 | None:intergenic |
| AGGATTGGGAAAGCTTCTAA+TGG | 0.474839 | 6_3:+82837499 | Msa0961380:CDS |
| TGATTTGATGAGTTGTTCAT+TGG | 0.476653 | 6_3:-82834509 | None:intergenic |
| CAGTTCGAGCCTCGTGTCCA+GGG | 0.479268 | 6_3:+82837473 | Msa0961380:intron |
| CATTGGTTCCACGGTGATGT+TGG | 0.489688 | 6_3:-82834348 | None:intergenic |
| GAAGATAGTGGTCCCTTGGT+TGG | 0.492453 | 6_3:+82837389 | Msa0961380:CDS |
| TAAAACCTTGAAACCTAAAG+AGG | 0.500127 | 6_3:-82838806 | None:intergenic |
| TATTGAGCTTATCGCCCAAA+AGG | 0.500241 | 6_3:+82837526 | Msa0961380:CDS |
| ACTTTCCTTGTAGAACTGCA+TGG | 0.510555 | 6_3:+82837787 | Msa0961380:intron |
| CTTTCCTTGTAGAACTGCAT+GGG | 0.513452 | 6_3:+82837788 | Msa0961380:intron |
| CCGTCGTTATAGAGAGAAGA+AGG | 0.518234 | 6_3:+82834386 | Msa0961380:CDS |
| TCGTGTCCAGGGGAAAGGAT+TGG | 0.525244 | 6_3:+82837484 | Msa0961380:CDS |
| TGAGTGGCAAGAGGAAGAAA+AGG | 0.525897 | 6_3:+82837244 | Msa0961380:CDS |
| TGTTTCTTGCATTGGTTCCA+CGG | 0.529875 | 6_3:-82834357 | None:intergenic |
| GAGCCTCGTGTCCAGGGGAA+AGG | 0.537667 | 6_3:+82837479 | Msa0961380:CDS |
| CTTGCCACTCAGATCCATAT+GGG | 0.539384 | 6_3:-82837232 | None:intergenic |
| CCTTCTTCTCTCTATAACGA+CGG | 0.554637 | 6_3:-82834386 | None:intergenic |
| TCAAGAAGATAGTGGTCCCT+TGG | 0.557490 | 6_3:+82837385 | Msa0961380:CDS |
| CATCTCGTCAGCATTTGCAT+TGG | 0.562164 | 6_3:-82837324 | None:intergenic |
| TGTCGTGCTAACTGTTCAAA+AGG | 0.565012 | 6_3:+82837814 | Msa0961380:CDS |
| ACGCTATATATTTGTGCATG+AGG | 0.569652 | 6_3:+82837298 | Msa0961380:CDS |
| ACCTTCTAAAGTTTATCCAA+TGG | 0.570234 | 6_3:+82838585 | Msa0961380:CDS |
| ACTAGTCGTCAAGAAGATAG+TGG | 0.589965 | 6_3:+82837377 | Msa0961380:CDS |
| AATCTACAGCTTAACATGGA+AGG | 0.595080 | 6_3:+82837209 | Msa0961380:intron |
| AATCCTTTCCCCTGGACACG+AGG | 0.597062 | 6_3:-82837482 | None:intergenic |
| CAATCTAATGGTGCACTGAG+TGG | 0.617787 | 6_3:-82838749 | None:intergenic |
| ATATGGATCTGAGTGGCAAG+AGG | 0.653218 | 6_3:+82837235 | Msa0961380:CDS |
| TCTAAATCTACAGCTTAACA+TGG | 0.653637 | 6_3:+82837205 | Msa0961380:intron |
| AGTTCGAGCCTCGTGTCCAG+GGG | 0.660015 | 6_3:+82837474 | Msa0961380:intron |
| TAATGTACAAATCCAACCAA+GGG | 0.669573 | 6_3:-82837401 | None:intergenic |
| GTAATGTACAAATCCAACCA+AGG | 0.669580 | 6_3:-82837402 | None:intergenic |
| GATGACAACAGTGCTGACTG+AGG | 0.675729 | 6_3:+82837343 | Msa0961380:CDS |
| GATAAACAGGAAAAGAAGCG+AGG | 0.692635 | 6_3:-82834552 | None:intergenic |
| ATAAACTTTAGAAGGTGACG+TGG | 0.706293 | 6_3:-82838578 | None:intergenic |
| CCTCTTCTTCCAAAACAAAG+CGG | 0.723548 | 6_3:-82837424 | None:intergenic |
| AAGGCCCATATGGATCTGAG+TGG | 0.744440 | 6_3:+82837228 | Msa0961380:CDS |
| GAGATGCTCCAACATCACCG+TGG | 0.782648 | 6_3:+82834340 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATTTCAACATAATTA+TGG | + | chr6_3:82835544-82835563 | Msa0961380:intron | 10.0% |
| !!! | TTGAAATTTTAAAAATGATT+TGG | + | chr6_3:82836595-82836614 | Msa0961380:intron | 10.0% |
| !!! | TGAAATTTTAAAAATGATTT+GGG | + | chr6_3:82836596-82836615 | Msa0961380:intron | 10.0% |
| !!! | CAATTTATTGATTTATTAAA+AGG | + | chr6_3:82837717-82837736 | Msa0961380:intron | 10.0% |
| !! | TGAAATACAATTAATTAATA+AGG | - | chr6_3:82838008-82838027 | None:intergenic | 10.0% |
| !! | ATTCTCATAATAAAAATTTA+AGG | + | chr6_3:82838353-82838372 | Msa0961380:intron | 10.0% |
| !!! | TTTTTTCAATTAAGATAATG+AGG | + | chr6_3:82835141-82835160 | Msa0961380:intron | 15.0% |
| !!! | TTTTTCAATTAAGATAATGA+GGG | + | chr6_3:82835142-82835161 | Msa0961380:intron | 15.0% |
| !!! | GAAATTTTAAAAATGATTTG+GGG | + | chr6_3:82836597-82836616 | Msa0961380:intron | 15.0% |
| !!! | AAATTTTAAAAATGATTTGG+GGG | + | chr6_3:82836598-82836617 | Msa0961380:intron | 15.0% |
| !! | ATAGAATATAGATATATATG+TGG | - | chr6_3:82838133-82838152 | None:intergenic | 15.0% |
| !! | TGTAATAGACTTATATATAA+GGG | + | chr6_3:82838154-82838173 | Msa0961380:intron | 15.0% |
| !! | TTCATAATTCTCATAATATT+TGG | + | chr6_3:82838438-82838457 | Msa0961380:intron | 15.0% |
| !!! | AAGTTTCTTTTTTGAATTAG+CGG | - | chr6_3:82835405-82835424 | None:intergenic | 20.0% |
| !! | TAAATACTACACTCTAAATT+AGG | - | chr6_3:82835648-82835667 | None:intergenic | 20.0% |
| !! | TAAATACTACACTCTAAATT+AGG | - | chr6_3:82835648-82835667 | None:intergenic | 20.0% |
| !!! | AATTTTAAAAATGATTTGGG+GGG | + | chr6_3:82836599-82836618 | Msa0961380:intron | 20.0% |
| !!! | ACAACAACTTCATTTTTTAT+AGG | - | chr6_3:82836793-82836812 | None:intergenic | 20.0% |
| !! | ATATCATGAACATAAAAAGA+GGG | - | chr6_3:82837132-82837151 | None:intergenic | 20.0% |
| !! | TATCAAAGATCATATTAGAT+GGG | - | chr6_3:82837757-82837776 | None:intergenic | 20.0% |
| !! | ATATCAAAGATCATATTAGA+TGG | - | chr6_3:82837758-82837777 | None:intergenic | 20.0% |
| !!! | ATTTTTACACAAGTAAACTA+AGG | + | chr6_3:82837855-82837874 | Msa0961380:CDS | 20.0% |
| !! | GTGTAATAGACTTATATATA+AGG | + | chr6_3:82838153-82838172 | Msa0961380:intron | 20.0% |
| !! | TAAGAAAAATATGATCGTTA+GGG | + | chr6_3:82838314-82838333 | Msa0961380:intron | 20.0% |
| !! | GAATTATGAAAGTAGAAAAT+AGG | - | chr6_3:82838428-82838447 | None:intergenic | 20.0% |
| !!! | TTTCATAACACTTATGATTT+TGG | - | chr6_3:82838623-82838642 | None:intergenic | 20.0% |
| !! | ATCATAGATAATCAATCTAA+TGG | - | chr6_3:82838764-82838783 | None:intergenic | 20.0% |
| !! | AAATTTCATAAAACCTCTTT+AGG | + | chr6_3:82838793-82838812 | Msa0961380:three_prime_UTR | 20.0% |
| !! | GTTTTTCATAAGATATCATG+AGG | + | chr6_3:82834770-82834789 | Msa0961380:intron | 25.0% |
| !! | CTTATTGAATTTGAAGTGTT+TGG | + | chr6_3:82835007-82835026 | Msa0961380:intron | 25.0% |
| ! | CTAACTACATTACTAATTAC+AGG | + | chr6_3:82835475-82835494 | Msa0961380:intron | 25.0% |
| ! | AACAGTTGAAAATTTGAACT+TGG | + | chr6_3:82836098-82836117 | Msa0961380:intron | 25.0% |
| !!! | ACTTCATTTTTTATAGGCTT+TGG | - | chr6_3:82836787-82836806 | None:intergenic | 25.0% |
| ! | AGAAGGATAAAGCAAATAAA+AGG | - | chr6_3:82836868-82836887 | None:intergenic | 25.0% |
| ! | TGCCTTATAAACAAAAAATG+AGG | + | chr6_3:82837015-82837034 | Msa0961380:intron | 25.0% |
| ! | GCCTTATAAACAAAAAATGA+GGG | + | chr6_3:82837016-82837035 | Msa0961380:intron | 25.0% |
| !!! | ACCCTCATTTTTTGTTTATA+AGG | - | chr6_3:82837020-82837039 | None:intergenic | 25.0% |
| ! | CATATCATGAACATAAAAAG+AGG | - | chr6_3:82837133-82837152 | None:intergenic | 25.0% |
| !! | TGTTAGCTTATTCATTGAAA+TGG | + | chr6_3:82837157-82837176 | Msa0961380:intron | 25.0% |
| !! | GTTAGCTTATTCATTGAAAT+GGG | + | chr6_3:82837158-82837177 | Msa0961380:intron | 25.0% |
| !! | AAAACAATTAAGCACCTTTT+GGG | - | chr6_3:82837543-82837562 | None:intergenic | 25.0% |
| !! | AAAAACAATTAAGCACCTTT+TGG | - | chr6_3:82837544-82837563 | None:intergenic | 25.0% |
| ! | GAATTATTGTTATGTTGCAA+AGG | + | chr6_3:82837596-82837615 | Msa0961380:intron | 25.0% |
| ! | AGCGATAAAAAATTCAATGA+TGG | - | chr6_3:82837902-82837921 | None:intergenic | 25.0% |
| ! | TCAAGTTTGATATGAATGAA+AGG | + | chr6_3:82837944-82837963 | Msa0961380:intron | 25.0% |
| ! | CAAGTTTGATATGAATGAAA+GGG | + | chr6_3:82837945-82837964 | Msa0961380:intron | 25.0% |
| !! | ATATTTTCTGCAATGCATTA+AGG | - | chr6_3:82838032-82838051 | None:intergenic | 25.0% |
| ! | GTAAGAAAAATATGATCGTT+AGG | + | chr6_3:82838313-82838332 | Msa0961380:intron | 25.0% |
| ! | AAAAATTTAAGGATCTTTGC+AGG | + | chr6_3:82838364-82838383 | Msa0961380:intron | 25.0% |
| ! | ACGAAGACTAAACATAAAAA+GGG | - | chr6_3:82838513-82838532 | None:intergenic | 25.0% |
| ! | AACGAAGACTAAACATAAAA+AGG | - | chr6_3:82838514-82838533 | None:intergenic | 25.0% |
| !! | ATAACACTTATGATTTTGGA+GGG | - | chr6_3:82838619-82838638 | None:intergenic | 25.0% |
| !!! | TGAAGCTAAAACTATTTTTG+AGG | + | chr6_3:82838722-82838741 | Msa0961380:CDS | 25.0% |
| TGATTTGATGAGTTGTTCAT+TGG | - | chr6_3:82834512-82834531 | None:intergenic | 30.0% | |
| CAAATCAGCTTATAGCATAA+AGG | + | chr6_3:82834525-82834544 | Msa0961380:CDS | 30.0% | |
| TGCTTCGAAATTAATGGTAA+CGG | + | chr6_3:82834577-82834596 | Msa0961380:intron | 30.0% | |
| AGGAGCTTATGAAAATAAGT+TGG | + | chr6_3:82834790-82834809 | Msa0961380:intron | 30.0% | |
| ! | CCAAACAGTAACAAAGTTTT+AGG | - | chr6_3:82834921-82834940 | None:intergenic | 30.0% |
| CCTAAAACTTTGTTACTGTT+TGG | + | chr6_3:82834918-82834937 | Msa0961380:intron | 30.0% | |
| !! | CTAGCTAATAGTGGATAAAT+TGG | + | chr6_3:82834984-82835003 | Msa0961380:intron | 30.0% |
| CTATAAGCTCAAATACTACA+CGG | + | chr6_3:82835198-82835217 | Msa0961380:intron | 30.0% | |
| !!! | ATTTTAAGTTCTGGTTGGAA+AGG | - | chr6_3:82835346-82835365 | None:intergenic | 30.0% |
| !!! | ACATTCGTCATTTTAAGTTC+TGG | - | chr6_3:82835355-82835374 | None:intergenic | 30.0% |
| TAGGCTATAAGGTCAAAATT+AGG | - | chr6_3:82835629-82835648 | None:intergenic | 30.0% | |
| ACACTCTAAATTAGGCTATA+AGG | - | chr6_3:82835640-82835659 | None:intergenic | 30.0% | |
| TAGGCTATAAGGTCAAAATT+AGG | - | chr6_3:82835629-82835648 | None:intergenic | 30.0% | |
| ACACTCTAAATTAGGCTATA+AGG | - | chr6_3:82835640-82835659 | None:intergenic | 30.0% | |
| CAAGAACAGACAATGAAATT+CGG | - | chr6_3:82835807-82835826 | None:intergenic | 30.0% | |
| !!! | TATCTAGTTTTGTTCACGAT+TGG | + | chr6_3:82835839-82835858 | Msa0961380:intron | 30.0% |
| !! | TTACAATGAAGGTGCATTTT+TGG | - | chr6_3:82835887-82835906 | None:intergenic | 30.0% |
| AGTTGAAAATTTGAACTTGG+AGG | + | chr6_3:82836101-82836120 | Msa0961380:intron | 30.0% | |
| TTCCTTATTGAACTCTGATA+TGG | + | chr6_3:82836158-82836177 | Msa0961380:intron | 30.0% | |
| TTCCATATCAGAGTTCAATA+AGG | - | chr6_3:82836163-82836182 | None:intergenic | 30.0% | |
| CTTATTACTTCAGGAATAAC+AGG | - | chr6_3:82836276-82836295 | None:intergenic | 30.0% | |
| AAAGAAGAGCTTATTACTTC+AGG | - | chr6_3:82836285-82836304 | None:intergenic | 30.0% | |
| AATTGATCATTCCTTAGAGA+AGG | + | chr6_3:82836488-82836507 | Msa0961380:intron | 30.0% | |
| CATTGTTCCTATATATAGTG+AGG | + | chr6_3:82836557-82836576 | Msa0961380:intron | 30.0% | |
| ! | TTCTGTCTATTTGAAACAAC+AGG | - | chr6_3:82836690-82836709 | None:intergenic | 30.0% |
| ! | TGCTTTATCCTTCTTTTTGT+CGG | + | chr6_3:82836874-82836893 | Msa0961380:intron | 30.0% |
| ! | GTGTATTGATCATGTGTATA+CGG | + | chr6_3:82836956-82836975 | Msa0961380:intron | 30.0% |
| ! | TGTATTGATCATGTGTATAC+GGG | + | chr6_3:82836957-82836976 | Msa0961380:intron | 30.0% |
| AAACACTAAATGTCAGGATT+AGG | - | chr6_3:82836991-82837010 | None:intergenic | 30.0% | |
| CACAAAAAACACTAAATGTC+AGG | - | chr6_3:82836997-82837016 | None:intergenic | 30.0% | |
| TTCAATGAATAAGCTAACAC+AGG | - | chr6_3:82837156-82837175 | None:intergenic | 30.0% | |
| TCTAAATCTACAGCTTAACA+TGG | + | chr6_3:82837205-82837224 | Msa0961380:intron | 30.0% | |
| TAATGTACAAATCCAACCAA+GGG | - | chr6_3:82837404-82837423 | None:intergenic | 30.0% | |
| AGTTCATACACATAAAGTAC+CGG | - | chr6_3:82837452-82837471 | None:intergenic | 30.0% | |
| TATAGTCTAGGAAAAGATGA+TGG | + | chr6_3:82837627-82837646 | Msa0961380:intron | 30.0% | |
| ! | TCTCTTTTTGTAGACATATG+CGG | - | chr6_3:82838084-82838103 | None:intergenic | 30.0% |
| TAACAATGATTGACATGTTG+AGG | - | chr6_3:82838218-82838237 | None:intergenic | 30.0% | |
| !!! | ATAATATTTGGTTTTAGCCC+AGG | + | chr6_3:82838450-82838469 | Msa0961380:intron | 30.0% |
| GATATCTTGATAGATAACCT+GGG | - | chr6_3:82838470-82838489 | None:intergenic | 30.0% | |
| TGATATCTTGATAGATAACC+TGG | - | chr6_3:82838471-82838490 | None:intergenic | 30.0% | |
| AGACTAAACATAAAAAGGGA+GGG | - | chr6_3:82838509-82838528 | None:intergenic | 30.0% | |
| AAGACTAAACATAAAAAGGG+AGG | - | chr6_3:82838510-82838529 | None:intergenic | 30.0% | |
| !! | TTTAGTCTTCGTTTTGTTGA+TGG | + | chr6_3:82838521-82838540 | Msa0961380:intron | 30.0% |
| !! | ACCTTCTAAAGTTTATCCAA+TGG | + | chr6_3:82838585-82838604 | Msa0961380:CDS | 30.0% |
| ACCATTGGATAAACTTTAGA+AGG | - | chr6_3:82838589-82838608 | None:intergenic | 30.0% | |
| ! | TCTAAAGTTTATCCAATGGT+AGG | + | chr6_3:82838589-82838608 | Msa0961380:intron | 30.0% |
| !! | TAACACTTATGATTTTGGAG+GGG | - | chr6_3:82838618-82838637 | None:intergenic | 30.0% |
| ! | CATAACACTTATGATTTTGG+AGG | - | chr6_3:82838620-82838639 | None:intergenic | 30.0% |
| ! | TAAAACCTCTTTAGGTTTCA+AGG | + | chr6_3:82838801-82838820 | Msa0961380:three_prime_UTR | 30.0% |
| TTCAAAAACACTCGTGAATG+AGG | - | chr6_3:82834443-82834462 | None:intergenic | 35.0% | |
| ! | ACAAAACTGTTTCGTTTTGC+AGG | + | chr6_3:82834468-82834487 | Msa0961380:intron | 35.0% |
| TATCGCTGCTTCGAAATTAA+TGG | + | chr6_3:82834571-82834590 | Msa0961380:intron | 35.0% | |
| TTACACATTAAGCCTCTGTT+TGG | + | chr6_3:82834660-82834679 | Msa0961380:intron | 35.0% | |
| TAAGCTGTTTATCCAAACAG+AGG | - | chr6_3:82834675-82834694 | None:intergenic | 35.0% | |
| GATAAACAGCTTATTTCGCA+TGG | + | chr6_3:82834682-82834701 | Msa0961380:intron | 35.0% | |
| !!! | ACAAAGTTTTAGGACGTGTT+TGG | - | chr6_3:82834911-82834930 | None:intergenic | 35.0% |
| TACCTGATAAGCTAACTGAT+AGG | + | chr6_3:82834955-82834974 | Msa0961380:intron | 35.0% | |
| AGGAGATAACTAGCTAATAG+TGG | + | chr6_3:82834975-82834994 | Msa0961380:intron | 35.0% | |
| TGAGCTTGTATGTTTGGTAA+TGG | - | chr6_3:82835286-82835305 | None:intergenic | 35.0% | |
| !!! | TCGTCATTTTAAGTTCTGGT+TGG | - | chr6_3:82835351-82835370 | None:intergenic | 35.0% |
| ! | GTTTTCCAATAATGCAATGC+TGG | - | chr6_3:82835743-82835762 | None:intergenic | 35.0% |
| ATCTCAGACAACAAAACGAT+TGG | - | chr6_3:82835770-82835789 | None:intergenic | 35.0% | |
| TCTTCTTGCTCTTACAATGA+AGG | - | chr6_3:82835898-82835917 | None:intergenic | 35.0% | |
| !! | TGATATGGAAGCATCTAATG+AGG | + | chr6_3:82836173-82836192 | Msa0961380:intron | 35.0% |
| !!! | TAATGAGGAGGTTTTGATTG+AGG | + | chr6_3:82836188-82836207 | Msa0961380:intron | 35.0% |
| GAAGTGTGATAGATAGTGAT+AGG | - | chr6_3:82836327-82836346 | None:intergenic | 35.0% | |
| GATCAATTTCTTCATCAGCA+AGG | - | chr6_3:82836476-82836495 | None:intergenic | 35.0% | |
| GTGTTGTATTCTTCACTACT+TGG | - | chr6_3:82836524-82836543 | None:intergenic | 35.0% | |
| AAAGCAGCCTCACTATATAT+AGG | - | chr6_3:82836567-82836586 | None:intergenic | 35.0% | |
| TCATGATCAGAGTTATGTAG+AGG | + | chr6_3:82836638-82836657 | Msa0961380:intron | 35.0% | |
| AACAAATTGCAACAGTCTAG+AGG | + | chr6_3:82836717-82836736 | Msa0961380:intron | 35.0% | |
| ACAAATTGCAACAGTCTAGA+GGG | + | chr6_3:82836718-82836737 | Msa0961380:intron | 35.0% | |
| CAATATAGCCGACAAAAAGA+AGG | - | chr6_3:82836885-82836904 | None:intergenic | 35.0% | |
| !! | TAGAGTGTTTTGCCTTAGTT+TGG | + | chr6_3:82836928-82836947 | Msa0961380:intron | 35.0% |
| AATACACCAAAGCCAAACTA+AGG | - | chr6_3:82836943-82836962 | None:intergenic | 35.0% | |
| ! | CAAAAAATGAGGGTGAGTTT+TGG | + | chr6_3:82837026-82837045 | Msa0961380:intron | 35.0% |
| GCTTATTCATTGAAATGGGT+AGG | + | chr6_3:82837162-82837181 | Msa0961380:intron | 35.0% | |
| AATCTACAGCTTAACATGGA+AGG | + | chr6_3:82837209-82837228 | Msa0961380:intron | 35.0% | |
| ACAAATATATAGCGTGCTTC+AGG | - | chr6_3:82837293-82837312 | None:intergenic | 35.0% | |
| ACGCTATATATTTGTGCATG+AGG | + | chr6_3:82837298-82837317 | Msa0961380:CDS | 35.0% | |
| GTAATGTACAAATCCAACCA+AGG | - | chr6_3:82837405-82837424 | None:intergenic | 35.0% | |
| !!! | TGTACATTACCGCTTTGTTT+TGG | + | chr6_3:82837415-82837434 | Msa0961380:CDS | 35.0% |
| AAGGACACAACTTATAGTCT+AGG | + | chr6_3:82837615-82837634 | Msa0961380:intron | 35.0% | |
| !! | ATATGTGTCTGCTTTTGAGA+AGG | + | chr6_3:82838048-82838067 | Msa0961380:intron | 35.0% |
| AAGGGAGGGAAAAAGTAATT+AGG | - | chr6_3:82838495-82838514 | None:intergenic | 35.0% | |
| ! | ATAAACTTTAGAAGGTGACG+TGG | - | chr6_3:82838581-82838600 | None:intergenic | 35.0% |
| !! | AACACTTATGATTTTGGAGG+GGG | - | chr6_3:82838617-82838636 | None:intergenic | 35.0% |
| TTTCTGTTCTCATATGCAGA+TGG | + | chr6_3:82838662-82838681 | Msa0961380:intron | 35.0% | |
| !! | TGTTTCTTGCATTGGTTCCA+CGG | - | chr6_3:82834360-82834379 | None:intergenic | 40.0% |
| CCTTCTTCTCTCTATAACGA+CGG | - | chr6_3:82834389-82834408 | None:intergenic | 40.0% | |
| GATAAACAGGAAAAGAAGCG+AGG | - | chr6_3:82834555-82834574 | None:intergenic | 40.0% | |
| ATTTCGAAGCAGCGATAAAC+AGG | - | chr6_3:82834568-82834587 | None:intergenic | 40.0% | |
| ! | CTCCTATCAGTTAGCTTATC+AGG | - | chr6_3:82834960-82834979 | None:intergenic | 40.0% |
| AGCACATGAGCTTGTATGTT+TGG | - | chr6_3:82835292-82835311 | None:intergenic | 40.0% | |
| TCCGCTATAAGTTAGCAGTT+TGG | + | chr6_3:82835320-82835339 | Msa0961380:intron | 40.0% | |
| GCCAAACTGCTAACTTATAG+CGG | - | chr6_3:82835324-82835343 | None:intergenic | 40.0% | |
| TTCCAATAATGCAATGCTGG+AGG | - | chr6_3:82835740-82835759 | None:intergenic | 40.0% | |
| !! | TTGTTCACGATTGGCCTATT+TGG | + | chr6_3:82835848-82835867 | Msa0961380:intron | 40.0% |
| !! | TGTTCACGATTGGCCTATTT+GGG | + | chr6_3:82835849-82835868 | Msa0961380:intron | 40.0% |
| GAATGAAGCACAACCCAAAT+AGG | - | chr6_3:82835865-82835884 | None:intergenic | 40.0% | |
| CCTTCTTGGGATTCAAAAAC+AGG | - | chr6_3:82835958-82835977 | None:intergenic | 40.0% | |
| !!! | CCTGTTTTTGAATCCCAAGA+AGG | + | chr6_3:82835955-82835974 | Msa0961380:intron | 40.0% |
| ! | TTTTGAATCCCAAGAAGGAG+AGG | + | chr6_3:82835960-82835979 | Msa0961380:intron | 40.0% |
| TTTGAATCCCAAGAAGGAGA+GGG | + | chr6_3:82835961-82835980 | Msa0961380:intron | 40.0% | |
| ATCAACTACTGATCCTGGTA+GGG | + | chr6_3:82835996-82836015 | Msa0961380:intron | 40.0% | |
| !! | TATGGAAGCATCTAATGAGG+AGG | + | chr6_3:82836176-82836195 | Msa0961380:intron | 40.0% |
| !!! | GGAGGTTTTGATTGAGGATT+TGG | + | chr6_3:82836194-82836213 | Msa0961380:intron | 40.0% |
| GTTACAACATGTGACTACCT+TGG | + | chr6_3:82836242-82836261 | Msa0961380:intron | 40.0% | |
| AATAACAGGATCCAAAGCCA+AGG | - | chr6_3:82836262-82836281 | None:intergenic | 40.0% | |
| TGATAGATAGTGATAGGCTG+AGG | - | chr6_3:82836321-82836340 | None:intergenic | 40.0% | |
| !! | GGTTCTAAGACAGGAAAAAC+AGG | - | chr6_3:82836369-82836388 | None:intergenic | 40.0% |
| !! | GTATTCACAGGTTCTAAGAC+AGG | - | chr6_3:82836378-82836397 | None:intergenic | 40.0% |
| GTCTTAGAACCTGTGAATAC+TGG | + | chr6_3:82836378-82836397 | Msa0961380:intron | 40.0% | |
| AGAACCTGTGAATACTGGAT+TGG | + | chr6_3:82836383-82836402 | Msa0961380:intron | 40.0% | |
| GTTTCCAATCCAGTATTCAC+AGG | - | chr6_3:82836390-82836409 | None:intergenic | 40.0% | |
| AGAGGATGATCATGCTAATC+AGG | + | chr6_3:82836656-82836675 | Msa0961380:intron | 40.0% | |
| TAAGGCAAAACACTCTAAGC+TGG | - | chr6_3:82836925-82836944 | None:intergenic | 40.0% | |
| !! | GTTTTGCCTTAGTTTGGCTT+TGG | + | chr6_3:82836934-82836953 | Msa0961380:intron | 40.0% |
| ! | GTTTTTGCCATGAAACTTCG+TGG | + | chr6_3:82837061-82837080 | Msa0961380:intron | 40.0% |
| GCCTTTAAACTCGTCTGAAT+CGG | + | chr6_3:82837097-82837116 | Msa0961380:intron | 40.0% | |
| TCCGATTCAGACGAGTTTAA+AGG | - | chr6_3:82837101-82837120 | None:intergenic | 40.0% | |
| AAAGGTGAAGCGTAGAGAAA+TGG | + | chr6_3:82837262-82837281 | Msa0961380:CDS | 40.0% | |
| ! | TCTTCTTGACGACTAGTTGA+AGG | - | chr6_3:82837374-82837393 | None:intergenic | 40.0% |
| ACTAGTCGTCAAGAAGATAG+TGG | + | chr6_3:82837377-82837396 | Msa0961380:CDS | 40.0% | |
| CCTCTTCTTCCAAAACAAAG+CGG | - | chr6_3:82837427-82837446 | None:intergenic | 40.0% | |
| !!! | TGTTTTGGAAGAAGAGGTAC+CGG | + | chr6_3:82837430-82837449 | Msa0961380:CDS | 40.0% |
| AGGATTGGGAAAGCTTCTAA+TGG | + | chr6_3:82837499-82837518 | Msa0961380:CDS | 40.0% | |
| TATTGAGCTTATCGCCCAAA+AGG | + | chr6_3:82837526-82837545 | Msa0961380:CDS | 40.0% | |
| ACTTTCCTTGTAGAACTGCA+TGG | + | chr6_3:82837787-82837806 | Msa0961380:intron | 40.0% | |
| CTTTCCTTGTAGAACTGCAT+GGG | + | chr6_3:82837788-82837807 | Msa0961380:intron | 40.0% | |
| TGTCGTGCTAACTGTTCAAA+AGG | + | chr6_3:82837814-82837833 | Msa0961380:CDS | 40.0% | |
| AAGGCTTATACGAGCAGTTA+GGG | - | chr6_3:82837989-82838008 | None:intergenic | 40.0% | |
| TAAGGCTTATACGAGCAGTT+AGG | - | chr6_3:82837990-82838009 | None:intergenic | 40.0% | |
| TTTGTAGACATATGCGGTTC+AGG | - | chr6_3:82838078-82838097 | None:intergenic | 40.0% | |
| CAAATAACCACGTGATGCTA+GGG | - | chr6_3:82838188-82838207 | None:intergenic | 40.0% | |
| !! | GGCTCTGTTGTTTCTTGCAT+TGG | - | chr6_3:82834368-82834387 | None:intergenic | 45.0% |
| CCGTCGTTATAGAGAGAAGA+AGG | + | chr6_3:82834386-82834405 | Msa0961380:CDS | 45.0% | |
| AGCCTCCAGCATTGCATTAT+TGG | + | chr6_3:82835735-82835754 | Msa0961380:intron | 45.0% | |
| !! | CGTTTTGTTGTCTGAGATGC+AGG | + | chr6_3:82835772-82835791 | Msa0961380:intron | 45.0% |
| GAATTCACCCTCTCCTTCTT+GGG | - | chr6_3:82835971-82835990 | None:intergenic | 45.0% | |
| ! | CAGGATCAGTAGTTGATGCA+GGG | - | chr6_3:82835993-82836012 | None:intergenic | 45.0% |
| CATCAACTACTGATCCTGGT+AGG | + | chr6_3:82835995-82836014 | Msa0961380:intron | 45.0% | |
| GGATCTCAATGCTTCTCAGA+AGG | + | chr6_3:82836215-82836234 | Msa0961380:intron | 45.0% | |
| ACATGTGACTACCTTGGCTT+TGG | + | chr6_3:82836248-82836267 | Msa0961380:intron | 45.0% | |
| ATAGTGATAGGCTGAGGCAA+AGG | - | chr6_3:82836315-82836334 | None:intergenic | 45.0% | |
| TACTGCAGCTCAGAACAATG+TGG | + | chr6_3:82836425-82836444 | Msa0961380:intron | 45.0% | |
| !! | TGGCCTTGATGCCAAAGTTT+TGG | + | chr6_3:82836445-82836464 | Msa0961380:intron | 45.0% |
| ! | GGCCTTGATGCCAAAGTTTT+GGG | + | chr6_3:82836446-82836465 | Msa0961380:intron | 45.0% |
| ! | GCCTTGATGCCAAAGTTTTG+GGG | + | chr6_3:82836447-82836466 | Msa0961380:intron | 45.0% |
| TCCCCAAAACTTTGGCATCA+AGG | - | chr6_3:82836451-82836470 | None:intergenic | 45.0% | |
| GAGAGTGAGATCCTTCTCTA+AGG | - | chr6_3:82836502-82836521 | None:intergenic | 45.0% | |
| TTGGGGGGATATTTCATCAG+TGG | + | chr6_3:82836614-82836633 | Msa0961380:intron | 45.0% | |
| !! | GGCTTTGGAAATTCCACTCT+TGG | - | chr6_3:82836772-82836791 | None:intergenic | 45.0% |
| GATCATGTGTATACGGGTTC+AGG | + | chr6_3:82836963-82836982 | Msa0961380:intron | 45.0% | |
| ATGGCAAAAACCTTGCCGTT+CGG | - | chr6_3:82837052-82837071 | None:intergenic | 45.0% | |
| GTGTGATCCACGAAGTTTCA+TGG | - | chr6_3:82837071-82837090 | None:intergenic | 45.0% | |
| GAAACTTCGTGGATCACACA+TGG | + | chr6_3:82837072-82837091 | Msa0961380:intron | 45.0% | |
| CTTAACATGGAAGGCCCATA+TGG | + | chr6_3:82837218-82837237 | Msa0961380:CDS | 45.0% | |
| CTTGCCACTCAGATCCATAT+GGG | - | chr6_3:82837235-82837254 | None:intergenic | 45.0% | |
| TCTTGCCACTCAGATCCATA+TGG | - | chr6_3:82837236-82837255 | None:intergenic | 45.0% | |
| ATATGGATCTGAGTGGCAAG+AGG | + | chr6_3:82837235-82837254 | Msa0961380:CDS | 45.0% | |
| TGAGTGGCAAGAGGAAGAAA+AGG | + | chr6_3:82837244-82837263 | Msa0961380:CDS | 45.0% | |
| CATCTCGTCAGCATTTGCAT+TGG | - | chr6_3:82837327-82837346 | None:intergenic | 45.0% | |
| ! | TCAAGAAGATAGTGGTCCCT+TGG | + | chr6_3:82837385-82837404 | Msa0961380:CDS | 45.0% |
| !!! | CCGCTTTGTTTTGGAAGAAG+AGG | + | chr6_3:82837424-82837443 | Msa0961380:CDS | 45.0% |
| ATGTTTACCCTAGCATCACG+TGG | + | chr6_3:82838178-82838197 | Msa0961380:intron | 45.0% | |
| GCAAATAACCACGTGATGCT+AGG | - | chr6_3:82838189-82838208 | None:intergenic | 45.0% | |
| CAATCTAATGGTGCACTGAG+TGG | - | chr6_3:82838752-82838771 | None:intergenic | 45.0% | |
| !! | CATTGGTTCCACGGTGATGT+TGG | - | chr6_3:82834351-82834370 | None:intergenic | 50.0% |
| ATGCAATGCTGGAGGCTACA+GGG | - | chr6_3:82835732-82835751 | None:intergenic | 50.0% | |
| AATGCAATGCTGGAGGCTAC+AGG | - | chr6_3:82835733-82835752 | None:intergenic | 50.0% | |
| GGAATTCACCCTCTCCTTCT+TGG | - | chr6_3:82835972-82835991 | None:intergenic | 50.0% | |
| ! | CCAGGATCAGTAGTTGATGC+AGG | - | chr6_3:82835994-82836013 | None:intergenic | 50.0% |
| CCTGCATCAACTACTGATCC+TGG | + | chr6_3:82835991-82836010 | Msa0961380:intron | 50.0% | |
| AACTACTGATCCTGGTAGGG+TGG | + | chr6_3:82835999-82836018 | Msa0961380:intron | 50.0% | |
| GCAAGGTCTCCCCAAAACTT+TGG | - | chr6_3:82836459-82836478 | None:intergenic | 50.0% | |
| TGGAAATTCCACTCTTGGCG+CGG | - | chr6_3:82836767-82836786 | None:intergenic | 50.0% | |
| AAGGCCCATATGGATCTGAG+TGG | + | chr6_3:82837228-82837247 | Msa0961380:CDS | 50.0% | |
| !! | GATGACAACAGTGCTGACTG+AGG | + | chr6_3:82837343-82837362 | Msa0961380:CDS | 50.0% |
| ! | GAAGATAGTGGTCCCTTGGT+TGG | + | chr6_3:82837389-82837408 | Msa0961380:CDS | 50.0% |
| AGCACCCATGCAGTTCTACA+AGG | - | chr6_3:82837795-82837814 | None:intergenic | 50.0% | |
| TACTGATCCTGGTAGGGTGG+AGG | + | chr6_3:82836002-82836021 | Msa0961380:intron | 55.0% | |
| GGAAATTCCACTCTTGGCGC+GGG | - | chr6_3:82836766-82836785 | None:intergenic | 55.0% | |
| !! | GAGGGTGAGTTTTGGCCGAA+CGG | + | chr6_3:82837034-82837053 | Msa0961380:intron | 55.0% |
| !! | TGAGTTTTGGCCGAACGGCA+AGG | + | chr6_3:82837039-82837058 | Msa0961380:intron | 55.0% |
| AATCCTTTCCCCTGGACACG+AGG | - | chr6_3:82837485-82837504 | None:intergenic | 55.0% | |
| TCGTGTCCAGGGGAAAGGAT+TGG | + | chr6_3:82837484-82837503 | Msa0961380:CDS | 55.0% | |
| CGTGTCCAGGGGAAAGGATT+GGG | + | chr6_3:82837485-82837504 | Msa0961380:CDS | 55.0% | |
| GCTTTCCCAATCCTTTCCCC+TGG | - | chr6_3:82837493-82837512 | None:intergenic | 55.0% | |
| !! | TTGGAGGGGGTACCTACCAT+TGG | - | chr6_3:82838604-82838623 | None:intergenic | 55.0% |
| GATGTCTCCTCCACCCTACC+AGG | - | chr6_3:82836012-82836031 | None:intergenic | 60.0% | |
| ATTCACACCCGCGCCAAGAG+TGG | + | chr6_3:82836756-82836775 | Msa0961380:intron | 60.0% | |
| ACAGTTCGAGCCTCGTGTCC+AGG | + | chr6_3:82837472-82837491 | Msa0961380:intron | 60.0% | |
| CAGTTCGAGCCTCGTGTCCA+GGG | + | chr6_3:82837473-82837492 | Msa0961380:intron | 60.0% | |
| AGTTCGAGCCTCGTGTCCAG+GGG | + | chr6_3:82837474-82837493 | Msa0961380:intron | 60.0% | |
| GAGCCTCGTGTCCAGGGGAA+AGG | + | chr6_3:82837479-82837498 | Msa0961380:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 82834343 | 82838827 | 82834343 | ID=Msa0961380;Name=Msa0961380 |
| chr6_3 | mRNA | 82834343 | 82838827 | 82834343 | ID=Msa0961380-mRNA-1;Parent=Msa0961380;Name=Msa0961380-mRNA-1;_AED=0.21;_eAED=0.23;_QI=0|0.5|0.42|1|0.33|0.42|7|60|223 |
| chr6_3 | exon | 82834343 | 82834423 | 82834343 | ID=Msa0961380-mRNA-1:exon:14811;Parent=Msa0961380-mRNA-1 |
| chr6_3 | exon | 82834490 | 82834567 | 82834490 | ID=Msa0961380-mRNA-1:exon:14812;Parent=Msa0961380-mRNA-1 |
| chr6_3 | exon | 82837218 | 82837451 | 82837218 | ID=Msa0961380-mRNA-1:exon:14813;Parent=Msa0961380-mRNA-1 |
| chr6_3 | exon | 82837476 | 82837547 | 82837476 | ID=Msa0961380-mRNA-1:exon:14814;Parent=Msa0961380-mRNA-1 |
| chr6_3 | exon | 82837800 | 82837876 | 82837800 | ID=Msa0961380-mRNA-1:exon:14815;Parent=Msa0961380-mRNA-1 |
| chr6_3 | exon | 82838564 | 82838606 | 82838564 | ID=Msa0961380-mRNA-1:exon:14816;Parent=Msa0961380-mRNA-1 |
| chr6_3 | exon | 82838681 | 82838827 | 82838681 | ID=Msa0961380-mRNA-1:exon:14817;Parent=Msa0961380-mRNA-1 |
| chr6_3 | CDS | 82834343 | 82834423 | 82834343 | ID=Msa0961380-mRNA-1:cds;Parent=Msa0961380-mRNA-1 |
| chr6_3 | CDS | 82834490 | 82834567 | 82834490 | ID=Msa0961380-mRNA-1:cds;Parent=Msa0961380-mRNA-1 |
| chr6_3 | CDS | 82837218 | 82837451 | 82837218 | ID=Msa0961380-mRNA-1:cds;Parent=Msa0961380-mRNA-1 |
| chr6_3 | CDS | 82837476 | 82837547 | 82837476 | ID=Msa0961380-mRNA-1:cds;Parent=Msa0961380-mRNA-1 |
| chr6_3 | CDS | 82837800 | 82837876 | 82837800 | ID=Msa0961380-mRNA-1:cds;Parent=Msa0961380-mRNA-1 |
| chr6_3 | CDS | 82838564 | 82838606 | 82838564 | ID=Msa0961380-mRNA-1:cds;Parent=Msa0961380-mRNA-1 |
| chr6_3 | CDS | 82838681 | 82838767 | 82838681 | ID=Msa0961380-mRNA-1:cds;Parent=Msa0961380-mRNA-1 |
| chr6_3 | three_prime_UTR | 82838768 | 82838827 | 82838768 | ID=Msa0961380-mRNA-1:three_prime_utr;Parent=Msa0961380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
