Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961810 | sp|O64703|AGL29_ARATH | 31.646 | 158 | 99 | 5 | 9 | 159 | 2 | 157 | 4.56e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961810 | A0A072UJ33 | 71.691 | 272 | 35 | 6 | 1 | 268 | 1 | 234 | 2.04e-116 | 342 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0961810 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961810 | MtrunA17_Chr4g0025531 | 71.691 | 272 | 35 | 6 | 1 | 268 | 1 | 234 | 3.92e-120 | 342 |
| Msa0961810 | MtrunA17_Chr3g0135891 | 46.541 | 159 | 52 | 5 | 106 | 260 | 16 | 145 | 1.07e-32 | 117 |
| Msa0961810 | MtrunA17_Chr3g0099421 | 35.338 | 133 | 76 | 3 | 5 | 127 | 30 | 162 | 2.95e-16 | 76.3 |
| Msa0961810 | MtrunA17_Chr1g0208561 | 29.560 | 159 | 98 | 3 | 5 | 149 | 5 | 163 | 3.08e-16 | 75.9 |
| Msa0961810 | MtrunA17_Chr8g0355091 | 34.307 | 137 | 80 | 3 | 1 | 127 | 1 | 137 | 4.18e-16 | 75.5 |
| Msa0961810 | MtrunA17_Chr3g0089141 | 29.448 | 163 | 101 | 3 | 1 | 149 | 1 | 163 | 6.90e-16 | 74.7 |
| Msa0961810 | MtrunA17_Chr1g0206701 | 35.338 | 133 | 76 | 3 | 5 | 127 | 5 | 137 | 7.26e-16 | 74.7 |
| Msa0961810 | MtrunA17_Chr1g0206991 | 34.559 | 136 | 79 | 3 | 1 | 126 | 1 | 136 | 7.69e-16 | 73.6 |
| Msa0961810 | MtrunA17_Chr1g0208581 | 32.117 | 137 | 83 | 2 | 1 | 127 | 1 | 137 | 1.46e-15 | 73.9 |
| Msa0961810 | MtrunA17_Chr1g0149391 | 45.588 | 68 | 37 | 0 | 5 | 72 | 5 | 72 | 2.16e-15 | 73.6 |
| Msa0961810 | MtrunA17_Chr3g0099411 | 42.308 | 78 | 45 | 0 | 5 | 82 | 5 | 82 | 3.33e-15 | 72.8 |
| Msa0961810 | MtrunA17_Chr3g0119901 | 42.683 | 82 | 47 | 0 | 1 | 82 | 1 | 82 | 4.27e-15 | 72.0 |
| Msa0961810 | MtrunA17_Chr1g0206721 | 42.308 | 78 | 45 | 0 | 5 | 82 | 5 | 82 | 4.30e-15 | 72.8 |
| Msa0961810 | MtrunA17_Chr5g0422421 | 27.317 | 205 | 107 | 6 | 5 | 191 | 5 | 185 | 6.35e-15 | 72.4 |
| Msa0961810 | MtrunA17_Chr2g0292791 | 42.308 | 78 | 45 | 0 | 5 | 82 | 5 | 82 | 6.35e-15 | 72.4 |
| Msa0961810 | MtrunA17_Chr1g0188671 | 40.244 | 82 | 49 | 0 | 1 | 82 | 39 | 120 | 6.69e-15 | 72.8 |
| Msa0961810 | MtrunA17_Chr2g0317481 | 40.260 | 77 | 46 | 0 | 1 | 77 | 1 | 77 | 6.94e-15 | 72.0 |
| Msa0961810 | MtrunA17_Chr2g0317451 | 40.260 | 77 | 46 | 0 | 1 | 77 | 1 | 77 | 7.44e-15 | 72.0 |
| Msa0961810 | MtrunA17_Chr3g0085241 | 43.038 | 79 | 45 | 0 | 4 | 82 | 36 | 114 | 7.58e-15 | 72.4 |
| Msa0961810 | MtrunA17_Chr5g0422941 | 27.228 | 202 | 113 | 6 | 1 | 187 | 1 | 183 | 1.62e-14 | 71.2 |
| Msa0961810 | MtrunA17_Chr4g0052061 | 35.294 | 102 | 62 | 1 | 9 | 106 | 2 | 103 | 2.90e-14 | 68.9 |
| Msa0961810 | MtrunA17_Chr5g0419601 | 40.260 | 77 | 46 | 0 | 1 | 77 | 1 | 77 | 8.89e-14 | 68.9 |
| Msa0961810 | MtrunA17_Chr8g0379021 | 27.950 | 161 | 109 | 2 | 4 | 159 | 7 | 165 | 8.90e-14 | 67.8 |
| Msa0961810 | MtrunA17_Chr2g0325971 | 40.278 | 72 | 43 | 0 | 1 | 72 | 1 | 72 | 2.11e-13 | 67.8 |
| Msa0961810 | MtrunA17_Chr4g0052081 | 38.571 | 70 | 43 | 0 | 9 | 78 | 2 | 71 | 2.91e-13 | 66.6 |
| Msa0961810 | MtrunA17_Chr1g0187361 | 37.179 | 78 | 49 | 0 | 5 | 82 | 5 | 82 | 3.08e-13 | 67.4 |
| Msa0961810 | MtrunA17_Chr2g0300421 | 35.366 | 82 | 53 | 0 | 1 | 82 | 1 | 82 | 5.18e-13 | 65.9 |
| Msa0961810 | MtrunA17_Chr2g0333981 | 25.625 | 160 | 112 | 2 | 4 | 158 | 7 | 164 | 7.72e-13 | 65.1 |
| Msa0961810 | MtrunA17_Chr3g0089151 | 38.889 | 72 | 44 | 0 | 1 | 72 | 1 | 72 | 8.07e-13 | 64.3 |
| Msa0961810 | MtrunA17_Chr2g0300441 | 28.205 | 117 | 71 | 1 | 5 | 121 | 5 | 108 | 4.13e-12 | 64.3 |
| Msa0961810 | MtrunA17_Chr3g0111841 | 44.828 | 58 | 32 | 0 | 15 | 72 | 2 | 59 | 2.54e-11 | 58.5 |
| Msa0961810 | MtrunA17_Chr8g0376821 | 33.735 | 83 | 47 | 1 | 9 | 83 | 2 | 84 | 3.48e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961810 | AT4G36590.1 | 32.353 | 170 | 98 | 5 | 5 | 159 | 3 | 170 | 3.39e-17 | 79.0 |
| Msa0961810 | AT2G34440.1 | 31.646 | 158 | 99 | 5 | 9 | 159 | 2 | 157 | 4.64e-16 | 74.3 |
| Msa0961810 | AT1G29962.1 | 43.750 | 80 | 44 | 1 | 1 | 80 | 1 | 79 | 1.35e-15 | 73.6 |
| Msa0961810 | AT5G60440.1 | 42.308 | 78 | 44 | 1 | 5 | 82 | 3 | 79 | 5.07e-14 | 70.9 |
| Msa0961810 | AT2G24840.1 | 40.000 | 80 | 48 | 0 | 7 | 86 | 61 | 140 | 6.60e-14 | 70.1 |
| Msa0961810 | AT1G28460.1 | 29.605 | 152 | 88 | 3 | 1 | 137 | 1 | 148 | 5.56e-13 | 66.2 |
| Msa0961810 | AT1G01530.1 | 33.645 | 107 | 67 | 1 | 5 | 107 | 3 | 109 | 1.56e-12 | 66.2 |
| Msa0961810 | AT3G04100.1 | 35.714 | 84 | 51 | 1 | 5 | 88 | 10 | 90 | 1.26e-11 | 62.8 |
| Msa0961810 | AT3G66656.1 | 40.000 | 65 | 39 | 0 | 9 | 73 | 2 | 66 | 3.43e-11 | 61.2 |
| Msa0961810 | AT1G28450.1 | 38.750 | 80 | 48 | 1 | 1 | 80 | 1 | 79 | 5.95e-11 | 60.5 |
Find 34 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTATTGTCTTCCTTTCA+TGG | 0.211509 | 6_3:+84164355 | Msa0961810:CDS |
| TTGAAGATGTTGGAAAGTTC+TGG | 0.270990 | 6_3:+84163754 | Msa0961810:CDS |
| TCTGAGTTAACAACACTTTC+AGG | 0.273550 | 6_3:+84163523 | Msa0961810:CDS |
| GCAACCATACCTTTACCTTT+TGG | 0.288774 | 6_3:-84164394 | None:intergenic |
| TTTCCTCTTGATGACCTCTT+TGG | 0.311240 | 6_3:-84163412 | None:intergenic |
| ACACAAGGAGTCAACCTTAT+TGG | 0.323352 | 6_3:+84164439 | Msa0961810:CDS |
| ATCATTTCCTCTTCTATTGA+AGG | 0.331143 | 6_3:-84163649 | None:intergenic |
| AACAGCAAAGATCATGAAAT+TGG | 0.350136 | 6_3:+84164095 | Msa0961810:CDS |
| ATCCTCCGCTTGCACCAATA+AGG | 0.357163 | 6_3:-84164453 | None:intergenic |
| TGTTGGAAAGTTCTGGATAT+TGG | 0.391346 | 6_3:+84163761 | Msa0961810:CDS |
| TTTATTTGTGACAGCAACTA+AGG | 0.402905 | 6_3:-84163845 | None:intergenic |
| ATTCTCATGCTTTCTCCAAC+GGG | 0.403336 | 6_3:+84163559 | Msa0961810:CDS |
| TTTCTTTCACTTGATCATAC+TGG | 0.408170 | 6_3:-84163813 | None:intergenic |
| TTTGTTATAGATTCAGAAGA+TGG | 0.410640 | 6_3:-84163604 | None:intergenic |
| CCTCTTGATGACCTCTTTGG+CGG | 0.444165 | 6_3:-84163409 | None:intergenic |
| GCATTTACAACGAGAAAGTC+TGG | 0.455029 | 6_3:+84163484 | Msa0961810:CDS |
| TATTCTCATGCTTTCTCCAA+CGG | 0.502164 | 6_3:+84163558 | Msa0961810:CDS |
| TGATCCAAAAGGTAAAGGTA+TGG | 0.511773 | 6_3:+84164390 | Msa0961810:CDS |
| TGAAAATCCTTCAATAGAAG+AGG | 0.547647 | 6_3:+84163642 | Msa0961810:CDS |
| GACTCCATTCAGTTCCTCGA+TGG | 0.554069 | 6_3:-84164042 | None:intergenic |
| TCTACCATCGAGGAACTGAA+TGG | 0.572587 | 6_3:+84164038 | Msa0961810:CDS |
| GTCAACCTTATTGGTGCAAG+CGG | 0.586884 | 6_3:+84164448 | Msa0961810:CDS |
| AACCTTATTGGTGCAAGCGG+AGG | 0.596051 | 6_3:+84164451 | Msa0961810:CDS |
| GAGTAAGAATGCCGCCAAAG+AGG | 0.607370 | 6_3:+84163398 | None:intergenic |
| TTTGGATGAAAAGCATGTTG+CGG | 0.629913 | 6_3:+84163714 | Msa0961810:CDS |
| TGTAGTAATTTCTACCATCG+AGG | 0.654680 | 6_3:+84164028 | Msa0961810:intron |
| CCGCCAAAGAGGTCATCAAG+AGG | 0.664394 | 6_3:+84163409 | Msa0961810:CDS |
| TGAAAGTGTTGTTAACTCAG+AGG | 0.669188 | 6_3:-84163521 | None:intergenic |
| GGAGGAGATCTTAACCCTCG+TGG | 0.672202 | 6_3:+84163892 | Msa0961810:CDS |
| GCAAGCGGAGGATATGAAAG+TGG | 0.676676 | 6_3:+84164463 | Msa0961810:CDS |
| AAGCATGAGAATATCAACTG+AGG | 0.702546 | 6_3:-84163548 | None:intergenic |
| TCTCGTGATATAGAAACACA+AGG | 0.706006 | 6_3:+84164424 | Msa0961810:CDS |
| AAGATGTACACATACCACGA+GGG | 0.757349 | 6_3:-84163906 | None:intergenic |
| AAAGTCTGGAATTTACAACA+AGG | 0.757794 | 6_3:+84163498 | Msa0961810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATAATTAGACAAAA+AGG | - | chr6_3:84163989-84164008 | None:intergenic | 10.0% |
| !!! | TTTAAAATAATTAGACAAAA+AGG | - | chr6_3:84163989-84164008 | None:intergenic | 10.0% |
| !! | ATAAATAAAGTCTTGAAAAA+TGG | + | chr6_3:84163871-84163890 | Msa0961810:CDS | 15.0% |
| !!! | CTAATTATTTTAAATGAATC+TGG | + | chr6_3:84163995-84164014 | Msa0961810:intron | 15.0% |
| !! | AAAAACAAAAAATTAAACAC+AGG | - | chr6_3:84164141-84164160 | None:intergenic | 15.0% |
| !! | ATAAATAAAGTCTTGAAAAA+TGG | + | chr6_3:84163871-84163890 | Msa0961810:CDS | 15.0% |
| !!! | CTAATTATTTTAAATGAATC+TGG | + | chr6_3:84163995-84164014 | Msa0961810:intron | 15.0% |
| !! | AAAAACAAAAAATTAAACAC+AGG | - | chr6_3:84164141-84164160 | None:intergenic | 15.0% |
| !!! | TCATTTTGCTGTATAATATT+CGG | - | chr6_3:84163679-84163698 | None:intergenic | 20.0% |
| !!! | TGAAAAAAATGATGATCTTT+TGG | + | chr6_3:84163696-84163715 | Msa0961810:CDS | 20.0% |
| !! | AAAAAATTAAACACAGGAAT+GGG | - | chr6_3:84164135-84164154 | None:intergenic | 20.0% |
| !! | AATATTAAATGGTAAAAGCT+GGG | - | chr6_3:84164235-84164254 | None:intergenic | 20.0% |
| !! | TACCATTTAATATTCACTTA+TGG | + | chr6_3:84164241-84164260 | Msa0961810:intron | 20.0% |
| !! | ACCATTTAATATTCACTTAT+GGG | + | chr6_3:84164242-84164261 | Msa0961810:intron | 20.0% |
| !! | TCTTCTTAATTTCTATTACT+AGG | + | chr6_3:84164283-84164302 | Msa0961810:intron | 20.0% |
| !!! | TCATTTTGCTGTATAATATT+CGG | - | chr6_3:84163679-84163698 | None:intergenic | 20.0% |
| !!! | TGAAAAAAATGATGATCTTT+TGG | + | chr6_3:84163696-84163715 | Msa0961810:CDS | 20.0% |
| !! | AAAAAATTAAACACAGGAAT+GGG | - | chr6_3:84164135-84164154 | None:intergenic | 20.0% |
| !! | AATATTAAATGGTAAAAGCT+GGG | - | chr6_3:84164235-84164254 | None:intergenic | 20.0% |
| !! | TACCATTTAATATTCACTTA+TGG | + | chr6_3:84164241-84164260 | Msa0961810:intron | 20.0% |
| !! | ACCATTTAATATTCACTTAT+GGG | + | chr6_3:84164242-84164261 | Msa0961810:intron | 20.0% |
| !! | TCTTCTTAATTTCTATTACT+AGG | + | chr6_3:84164283-84164302 | Msa0961810:intron | 20.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | - | chr6_3:84163607-84163626 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGATGT+TGG | + | chr6_3:84163744-84163763 | Msa0961810:CDS | 25.0% |
| ! | AATAAAGTCTTGAAAAATGG+AGG | + | chr6_3:84163874-84163893 | Msa0961810:CDS | 25.0% |
| !!! | AAATCCTACTTATGTTTTTG+AGG | + | chr6_3:84164070-84164089 | Msa0961810:CDS | 25.0% |
| ! | CAAAAAATTAAACACAGGAA+TGG | - | chr6_3:84164136-84164155 | None:intergenic | 25.0% |
| !! | TTTTGCTTGAAATATTCTAG+CGG | + | chr6_3:84164157-84164176 | Msa0961810:intron | 25.0% |
| ! | GAATATTAAATGGTAAAAGC+TGG | - | chr6_3:84164236-84164255 | None:intergenic | 25.0% |
| ! | TCCCATAAGTGAATATTAAA+TGG | - | chr6_3:84164246-84164265 | None:intergenic | 25.0% |
| ! | AAAAAGATTGAATCCATGAA+AGG | - | chr6_3:84164371-84164390 | None:intergenic | 25.0% |
| !! | TTCAATCTTTTTGATCCAAA+AGG | + | chr6_3:84164379-84164398 | Msa0961810:CDS | 25.0% |
| !! | TTTGTTATAGATTCAGAAGA+TGG | - | chr6_3:84163607-84163626 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGATGT+TGG | + | chr6_3:84163744-84163763 | Msa0961810:CDS | 25.0% |
| ! | AATAAAGTCTTGAAAAATGG+AGG | + | chr6_3:84163874-84163893 | Msa0961810:CDS | 25.0% |
| !!! | AAATCCTACTTATGTTTTTG+AGG | + | chr6_3:84164070-84164089 | Msa0961810:CDS | 25.0% |
| ! | CAAAAAATTAAACACAGGAA+TGG | - | chr6_3:84164136-84164155 | None:intergenic | 25.0% |
| !! | TTTTGCTTGAAATATTCTAG+CGG | + | chr6_3:84164157-84164176 | Msa0961810:intron | 25.0% |
| ! | GAATATTAAATGGTAAAAGC+TGG | - | chr6_3:84164236-84164255 | None:intergenic | 25.0% |
| ! | TCCCATAAGTGAATATTAAA+TGG | - | chr6_3:84164246-84164265 | None:intergenic | 25.0% |
| ! | AAAAAGATTGAATCCATGAA+AGG | - | chr6_3:84164371-84164390 | None:intergenic | 25.0% |
| !! | TTCAATCTTTTTGATCCAAA+AGG | + | chr6_3:84164379-84164398 | Msa0961810:CDS | 25.0% |
| ATCAAGAGGAAAACAAAAAG+TGG | + | chr6_3:84163423-84163442 | Msa0961810:CDS | 30.0% | |
| ! | AAAGTCTGGAATTTACAACA+AGG | + | chr6_3:84163498-84163517 | Msa0961810:CDS | 30.0% |
| ! | GATGGTTTTCCATAACAAAA+TGG | - | chr6_3:84163589-84163608 | None:intergenic | 30.0% |
| TGAAAATCCTTCAATAGAAG+AGG | + | chr6_3:84163642-84163661 | Msa0961810:CDS | 30.0% | |
| ATCATTTCCTCTTCTATTGA+AGG | - | chr6_3:84163652-84163671 | None:intergenic | 30.0% | |
| TTTCTTTCACTTGATCATAC+TGG | - | chr6_3:84163816-84163835 | None:intergenic | 30.0% | |
| TTTATTTGTGACAGCAACTA+AGG | - | chr6_3:84163848-84163867 | None:intergenic | 30.0% | |
| TTGTCCTCAAAAACATAAGT+AGG | - | chr6_3:84164077-84164096 | None:intergenic | 30.0% | |
| AACAGCAAAGATCATGAAAT+TGG | + | chr6_3:84164095-84164114 | Msa0961810:CDS | 30.0% | |
| TATGTATTGTCTTCCTTTCA+TGG | + | chr6_3:84164355-84164374 | Msa0961810:CDS | 30.0% | |
| ! | CTTTTTGATCCAAAAGGTAA+AGG | + | chr6_3:84164385-84164404 | Msa0961810:CDS | 30.0% |
| ATCAAGAGGAAAACAAAAAG+TGG | + | chr6_3:84163423-84163442 | Msa0961810:CDS | 30.0% | |
| ! | AAAGTCTGGAATTTACAACA+AGG | + | chr6_3:84163498-84163517 | Msa0961810:CDS | 30.0% |
| ! | GATGGTTTTCCATAACAAAA+TGG | - | chr6_3:84163589-84163608 | None:intergenic | 30.0% |
| TGAAAATCCTTCAATAGAAG+AGG | + | chr6_3:84163642-84163661 | Msa0961810:CDS | 30.0% | |
| ATCATTTCCTCTTCTATTGA+AGG | - | chr6_3:84163652-84163671 | None:intergenic | 30.0% | |
| TTTCTTTCACTTGATCATAC+TGG | - | chr6_3:84163816-84163835 | None:intergenic | 30.0% | |
| TTTATTTGTGACAGCAACTA+AGG | - | chr6_3:84163848-84163867 | None:intergenic | 30.0% | |
| TTGTCCTCAAAAACATAAGT+AGG | - | chr6_3:84164077-84164096 | None:intergenic | 30.0% | |
| AACAGCAAAGATCATGAAAT+TGG | + | chr6_3:84164095-84164114 | Msa0961810:CDS | 30.0% | |
| TATGTATTGTCTTCCTTTCA+TGG | + | chr6_3:84164355-84164374 | Msa0961810:CDS | 30.0% | |
| ! | CTTTTTGATCCAAAAGGTAA+AGG | + | chr6_3:84164385-84164404 | Msa0961810:CDS | 30.0% |
| !! | TGAAAGTGTTGTTAACTCAG+AGG | - | chr6_3:84163524-84163543 | None:intergenic | 35.0% |
| TCTGAGTTAACAACACTTTC+AGG | + | chr6_3:84163523-84163542 | Msa0961810:CDS | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | - | chr6_3:84163551-84163570 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | + | chr6_3:84163558-84163577 | Msa0961810:CDS | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | - | chr6_3:84163577-84163596 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | + | chr6_3:84163577-84163596 | Msa0961810:CDS | 35.0% |
| ! | TTTGGATGAAAAGCATGTTG+CGG | + | chr6_3:84163714-84163733 | Msa0961810:CDS | 35.0% |
| TTGAAGATGTTGGAAAGTTC+TGG | + | chr6_3:84163754-84163773 | Msa0961810:CDS | 35.0% | |
| !! | TGTTGGAAAGTTCTGGATAT+TGG | + | chr6_3:84163761-84163780 | Msa0961810:CDS | 35.0% |
| TGTAGTAATTTCTACCATCG+AGG | + | chr6_3:84164028-84164047 | Msa0961810:intron | 35.0% | |
| TTGTAGACAAGAGATGTTGT+TGG | + | chr6_3:84164199-84164218 | Msa0961810:intron | 35.0% | |
| TGATCCAAAAGGTAAAGGTA+TGG | + | chr6_3:84164390-84164409 | Msa0961810:CDS | 35.0% | |
| TCTCGTGATATAGAAACACA+AGG | + | chr6_3:84164424-84164443 | Msa0961810:CDS | 35.0% | |
| !! | TGAAAGTGTTGTTAACTCAG+AGG | - | chr6_3:84163524-84163543 | None:intergenic | 35.0% |
| TCTGAGTTAACAACACTTTC+AGG | + | chr6_3:84163523-84163542 | Msa0961810:CDS | 35.0% | |
| AAGCATGAGAATATCAACTG+AGG | - | chr6_3:84163551-84163570 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | + | chr6_3:84163558-84163577 | Msa0961810:CDS | 35.0% | |
| ! | TAACAAAATGGTTTTCCCGT+TGG | - | chr6_3:84163577-84163596 | None:intergenic | 35.0% |
| ! | ACGGGAAAACCATTTTGTTA+TGG | + | chr6_3:84163577-84163596 | Msa0961810:CDS | 35.0% |
| ! | TTTGGATGAAAAGCATGTTG+CGG | + | chr6_3:84163714-84163733 | Msa0961810:CDS | 35.0% |
| TTGAAGATGTTGGAAAGTTC+TGG | + | chr6_3:84163754-84163773 | Msa0961810:CDS | 35.0% | |
| !! | TGTTGGAAAGTTCTGGATAT+TGG | + | chr6_3:84163761-84163780 | Msa0961810:CDS | 35.0% |
| TGTAGTAATTTCTACCATCG+AGG | + | chr6_3:84164028-84164047 | Msa0961810:intron | 35.0% | |
| TTGTAGACAAGAGATGTTGT+TGG | + | chr6_3:84164199-84164218 | Msa0961810:intron | 35.0% | |
| TGATCCAAAAGGTAAAGGTA+TGG | + | chr6_3:84164390-84164409 | Msa0961810:CDS | 35.0% | |
| TCTCGTGATATAGAAACACA+AGG | + | chr6_3:84164424-84164443 | Msa0961810:CDS | 35.0% | |
| ! | TTTCCTCTTGATGACCTCTT+TGG | - | chr6_3:84163415-84163434 | None:intergenic | 40.0% |
| GCATTTACAACGAGAAAGTC+TGG | + | chr6_3:84163484-84163503 | Msa0961810:CDS | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | + | chr6_3:84163559-84163578 | Msa0961810:CDS | 40.0% | |
| AAGATGTACACATACCACGA+GGG | - | chr6_3:84163909-84163928 | None:intergenic | 40.0% | |
| ! | GCAACCATACCTTTACCTTT+TGG | - | chr6_3:84164397-84164416 | None:intergenic | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | + | chr6_3:84164439-84164458 | Msa0961810:CDS | 40.0% | |
| ! | TTTCCTCTTGATGACCTCTT+TGG | - | chr6_3:84163415-84163434 | None:intergenic | 40.0% |
| GCATTTACAACGAGAAAGTC+TGG | + | chr6_3:84163484-84163503 | Msa0961810:CDS | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | + | chr6_3:84163559-84163578 | Msa0961810:CDS | 40.0% | |
| AAGATGTACACATACCACGA+GGG | - | chr6_3:84163909-84163928 | None:intergenic | 40.0% | |
| ! | GCAACCATACCTTTACCTTT+TGG | - | chr6_3:84164397-84164416 | None:intergenic | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | + | chr6_3:84164439-84164458 | Msa0961810:CDS | 40.0% | |
| GAAGATGTACACATACCACG+AGG | - | chr6_3:84163910-84163929 | None:intergenic | 45.0% | |
| TCTACCATCGAGGAACTGAA+TGG | + | chr6_3:84164038-84164057 | Msa0961810:CDS | 45.0% | |
| GTCAACCTTATTGGTGCAAG+CGG | + | chr6_3:84164448-84164467 | Msa0961810:CDS | 45.0% | |
| GAAGATGTACACATACCACG+AGG | - | chr6_3:84163910-84163929 | None:intergenic | 45.0% | |
| TCTACCATCGAGGAACTGAA+TGG | + | chr6_3:84164038-84164057 | Msa0961810:CDS | 45.0% | |
| GTCAACCTTATTGGTGCAAG+CGG | + | chr6_3:84164448-84164467 | Msa0961810:CDS | 45.0% | |
| ! | CCTCTTGATGACCTCTTTGG+CGG | - | chr6_3:84163412-84163431 | None:intergenic | 50.0% |
| GACTCCATTCAGTTCCTCGA+TGG | - | chr6_3:84164045-84164064 | None:intergenic | 50.0% | |
| AACCTTATTGGTGCAAGCGG+AGG | + | chr6_3:84164451-84164470 | Msa0961810:CDS | 50.0% | |
| ATCCTCCGCTTGCACCAATA+AGG | - | chr6_3:84164456-84164475 | None:intergenic | 50.0% | |
| GCAAGCGGAGGATATGAAAG+TGG | + | chr6_3:84164463-84164482 | Msa0961810:CDS | 50.0% | |
| ! | CCTCTTGATGACCTCTTTGG+CGG | - | chr6_3:84163412-84163431 | None:intergenic | 50.0% |
| GACTCCATTCAGTTCCTCGA+TGG | - | chr6_3:84164045-84164064 | None:intergenic | 50.0% | |
| AACCTTATTGGTGCAAGCGG+AGG | + | chr6_3:84164451-84164470 | Msa0961810:CDS | 50.0% | |
| ATCCTCCGCTTGCACCAATA+AGG | - | chr6_3:84164456-84164475 | None:intergenic | 50.0% | |
| GCAAGCGGAGGATATGAAAG+TGG | + | chr6_3:84164463-84164482 | Msa0961810:CDS | 50.0% | |
| CCGCCAAAGAGGTCATCAAG+AGG | + | chr6_3:84163409-84163428 | Msa0961810:CDS | 55.0% | |
| GGAGGAGATCTTAACCCTCG+TGG | + | chr6_3:84163892-84163911 | Msa0961810:CDS | 55.0% | |
| CCGCCAAAGAGGTCATCAAG+AGG | + | chr6_3:84163409-84163428 | Msa0961810:CDS | 55.0% | |
| GGAGGAGATCTTAACCCTCG+TGG | + | chr6_3:84163892-84163911 | Msa0961810:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 84163406 | 84164513 | 84163406 | ID=Msa0961810;Name=Msa0961810 |
| chr6_3 | mRNA | 84163406 | 84164513 | 84163406 | ID=Msa0961810-mRNA-1;Parent=Msa0961810;Name=Msa0961810-mRNA-1;_AED=0.04;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|268 |
| chr6_3 | exon | 84163406 | 84163913 | 84163406 | ID=Msa0961810-mRNA-1:exon:15092;Parent=Msa0961810-mRNA-1 |
| chr6_3 | exon | 84164033 | 84164122 | 84164033 | ID=Msa0961810-mRNA-1:exon:15093;Parent=Msa0961810-mRNA-1 |
| chr6_3 | exon | 84164305 | 84164513 | 84164305 | ID=Msa0961810-mRNA-1:exon:15094;Parent=Msa0961810-mRNA-1 |
| chr6_3 | CDS | 84163406 | 84163913 | 84163406 | ID=Msa0961810-mRNA-1:cds;Parent=Msa0961810-mRNA-1 |
| chr6_3 | CDS | 84164033 | 84164122 | 84164033 | ID=Msa0961810-mRNA-1:cds;Parent=Msa0961810-mRNA-1 |
| chr6_3 | CDS | 84164305 | 84164513 | 84164305 | ID=Msa0961810-mRNA-1:cds;Parent=Msa0961810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
