AlfalfaGEDB | Msa0961950

M. sativa cultivar zhongmu-4 / Msa0961950

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961950	QSD99826.1	71.094	256	30	6	1	212	1	256	1.79e-110	327

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961950	sp\|Q9FY93\|NAC83_ARATH	60.479	167	40	3	1	141	1	167	1.75e-63	200

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961950	A0A896WEL3	71.094	256	30	6	1	212	1	256	8.56e-111	327

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TFs/TRs:

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Gene ID	Type	Classification
Msa0961950	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961950	MtrunA17_Chr7g0214071	71.815	259	24	9	1	213	1	256	1.06e-109	315
Msa0961950	MtrunA17_Chr8g0385991	47.159	176	58	4	1	142	1	175	1.83e-48	158
Msa0961950	MtrunA17_Chr3g0131911	41.778	225	81	6	1	187	1	213	8.10e-45	149
Msa0961950	MtrunA17_Chr7g0243371	82.895	76	13	0	47	122	24	99	6.07e-41	135
Msa0961950	MtrunA17_Chr5g0417791	45.570	158	50	4	12	135	1	156	2.16e-37	130
Msa0961950	MtrunA17_Chr4g0042561	46.541	159	49	5	14	138	9	165	2.51e-37	130
Msa0961950	MtrunA17_Chr4g0060931	40.933	193	73	8	1	155	1	190	5.66e-36	129
Msa0961950	MtrunA17_Chr4g0047841	43.103	174	46	4	14	134	15	188	9.89e-36	128
Msa0961950	MtrunA17_Chr2g0318101	40.426	188	60	5	14	149	15	202	7.38e-35	126
Msa0961950	MtrunA17_Chr1g0183741	35.455	220	108	5	14	200	10	228	8.05e-35	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961950	AT5G13180.1	60.479	167	40	3	1	141	1	167	1.78e-64	200
Msa0961950	AT2G33480.2	57.576	165	42	5	1	139	1	163	7.74e-57	181
Msa0961950	AT2G33480.1	57.576	165	40	5	1	137	1	163	1.54e-56	180
Msa0961950	AT2G33480.3	61.616	99	33	2	42	137	10	106	1.79e-36	127
Msa0961950	AT1G77450.1	43.094	181	60	7	6	146	1	178	1.01e-35	126
Msa0961950	AT2G24430.2	43.827	162	62	3	8	140	10	171	1.19e-35	128
Msa0961950	AT2G24430.1	43.827	162	62	3	8	140	10	171	1.19e-35	128
Msa0961950	AT1G61110.1	44.910	167	49	5	10	134	12	177	1.42e-35	128
Msa0961950	AT1G69490.1	46.203	158	49	4	14	137	9	164	1.46e-35	126
Msa0961950	AT1G33280.1	42.763	152	55	4	14	135	8	157	1.76e-35	127

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Find 49 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCCAAGTATCCAAA+TGG	0.440359	6_3:+84590806	Msa0961950:CDS
AAAGGAGTGAAGCCAAGCAG+TGG	0.615889	6_3:+84591192	Msa0961950:CDS
AAATGGGAACCAATCCAACA+GGG	0.692548	6_3:+84590823	Msa0961950:CDS
AAGAAGCCAAGTATCCAAAT+GGG	0.544681	6_3:+84590807	Msa0961950:CDS
AAGATCAACTTCAGGAATGA+TGG	0.468508	6_3:-84590535	None:intergenic
AAGCATTTCCAAAAGAGGAT+GGG	0.563013	6_3:-84591380	None:intergenic
ACAACAAGTTCTTCATCTGT+TGG	0.444211	6_3:-84590468	None:intergenic
ACCAGAGTTTGTAGCCCTGT+TGG	0.493653	6_3:-84590837	None:intergenic
ACGGTGCTCCCATCCTCTTT+TGG	0.306942	6_3:+84591372	Msa0961950:CDS
ACTTCAGGAATGATGGAAGC+AGG	0.542259	6_3:-84590528	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTTAATACTTGAAGCGTA+AGG	+	chr6_3:84590488-84590507	Msa0961950:intron	30.0%
TAGTAGAAGTTATCATGTTC+CGG	-	chr6_3:84590689-84590708	None:intergenic	30.0%
TTCATGTTCATTTGTGATTG+AGG	-	chr6_3:84591328-84591347	None:intergenic	30.0%
TGTTTAATACTTGAAGCGTA+AGG	+	chr6_3:84590488-84590507	Msa0961950:intron	30.0%
TAGTAGAAGTTATCATGTTC+CGG	-	chr6_3:84590689-84590708	None:intergenic	30.0%
TTCATGTTCATTTGTGATTG+AGG	-	chr6_3:84591328-84591347	None:intergenic	30.0%
CTTCATCTGTTGGATGAAAA+CGG	-	chr6_3:84590461-84590480	None:intergenic	35.0%
ACAACAAGTTCTTCATCTGT+TGG	-	chr6_3:84590471-84590490	None:intergenic	35.0%
AAGATCAACTTCAGGAATGA+TGG	-	chr6_3:84590538-84590557	None:intergenic	35.0%
GAAAAGAAAGGTTACATACC+AGG	-	chr6_3:84590584-84590603	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	84590405	84591404	84590405	ID=Msa0961950;Name=Msa0961950
chr6_3	mRNA	84590405	84591404	84590405	ID=Msa0961950-mRNA-1;Parent=Msa0961950;Name=Msa0961950-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|1\|0.33\|0.5\|4\|0\|213
chr6_3	exon	84590405	84590485	84590405	ID=Msa0961950-mRNA-1:exon:15175;Parent=Msa0961950-mRNA-1
chr6_3	exon	84590504	84590562	84590504	ID=Msa0961950-mRNA-1:exon:15176;Parent=Msa0961950-mRNA-1
chr6_3	exon	84590802	84591027	84590802	ID=Msa0961950-mRNA-1:exon:15177;Parent=Msa0961950-mRNA-1
chr6_3	exon	84591129	84591404	84591129	ID=Msa0961950-mRNA-1:exon:15178;Parent=Msa0961950-mRNA-1
chr6_3	CDS	84590405	84590485	84590405	ID=Msa0961950-mRNA-1:cds;Parent=Msa0961950-mRNA-1
chr6_3	CDS	84590504	84590562	84590504	ID=Msa0961950-mRNA-1:cds;Parent=Msa0961950-mRNA-1
chr6_3	CDS	84590802	84591027	84590802	ID=Msa0961950-mRNA-1:cds;Parent=Msa0961950-mRNA-1
chr6_3	CDS	84591129	84591404	84591129	ID=Msa0961950-mRNA-1:cds;Parent=Msa0961950-mRNA-1

Gene Sequence

>Msa0961950

ATGGAGAAGATGAATTTTGTGAAGAATGGTGAATTGAGATTGCCACCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAATACAAAAGAAGCCAAGTATCCAAATGGGAACCAATCCAACAGGGCTACAAACTCTGGTTACTGGAAAGCAACTGGTTTGGACAAACAAATCATGAATTCAAAGACTCATGAAGTTGTTGGCATGAAGAAAACTCTTGTTTTCTACAGATGCAAACCACCTCATAGTTCCAGAACTGATTGGATCATGAATGAATATCACCTCACTTCCTCTCACTCCAATCCCTTGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGGAGAGCTGGTGCTAAAAATGGAGTGAAAGGAGTGAAGCCAAGCAGTGGCAACAACTTTGGTGAGGTGAAGAAGAACTCAGCTTCAGCTTCAAGTTCAAAGGTGGTTGTTTTCTATGATTTCTTGGCAGTGAAGAAGAACAATTCTGATGCATCCTCCTCCTCAATCACAAATGAACATGAAAATGAAGACAGCAGTAACTCATTCACGGTGCTCCCATCCTCTTTTGGAAATGCTTAA

Protein sequence

>Msa0961950

MEKMNFVKNGELRLPPGFRFHPTDEELRKVFSFPLPASIIPEVDLCNTKEAKYPNGNQSNRATNSGYWKATGLDKQIMNSKTHEVVGMKKTLVFYRCKPPHSSRTDWIMNEYHLTSSHSNPLNENWVLCRIFLKRRAGAKNGVKGVKPSSGNNFGEVKKNSASASSSKVVVFYDFLAVKKNNSDASSSSITNEHENEDSSNSFTVLPSSFGNA*