AlfalfaGEDB | Msa0963150

M. sativa cultivar zhongmu-4 / Msa0963150

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0963150	QSD99826.1	92.708	96	7	0	42	137	74	169	5.66e-59	196

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0963150	sp\|Q9FY93\|NAC83_ARATH	61.818	110	40	1	26	133	58	167	2.14e-41	144

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0963150	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0963150	MtrunA17_Chr7g0214071	90.909	99	8	1	42	139	75	173	2.18e-61	192
Msa0963150	MtrunA17_Chr7g0243371	87.671	73	9	0	42	114	27	99	2.45e-43	141
Msa0963150	MtrunA17_Chr4g0017921	47.200	125	52	5	10	127	40	157	6.98e-29	110
Msa0963150	MtrunA17_Chr1g0147421	56.383	94	40	1	40	132	89	182	8.77e-29	110
Msa0963150	MtrunA17_Chr1g0183741	50.485	103	47	2	27	126	55	156	1.64e-28	108
Msa0963150	MtrunA17_Chr7g0261411	50.495	101	46	2	27	124	55	154	2.59e-28	108
Msa0963150	MtrunA17_Chr1g0200561	45.968	124	62	4	42	164	85	204	4.16e-28	108
Msa0963150	MtrunA17_Chr3g0139331	53.191	94	43	1	40	132	72	165	5.21e-28	108
Msa0963150	MtrunA17_Chr3g0109821	43.709	151	74	5	10	153	38	184	1.58e-27	109
Msa0963150	MtrunA17_Chr4g0018391	46.789	109	49	3	26	127	51	157	2.99e-27	106

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0963150	AT5G13180.1	61.818	110	40	1	26	133	58	167	2.17e-42	144
Msa0963150	AT2G33480.3	67.778	90	24	2	42	128	18	105	2.15e-38	132
Msa0963150	AT2G33480.2	67.033	91	27	2	42	131	75	163	1.07e-37	132
Msa0963150	AT2G33480.1	65.591	93	27	2	42	131	75	165	2.49e-37	131
Msa0963150	AT2G24430.2	59.551	89	34	1	40	126	77	165	1.77e-30	114
Msa0963150	AT2G24430.1	59.551	89	34	1	40	126	77	165	1.77e-30	114
Msa0963150	AT1G33280.1	44.355	124	57	3	10	127	40	157	1.77e-30	114
Msa0963150	AT4G10350.1	44.882	127	55	4	10	127	41	161	1.91e-29	112
Msa0963150	AT4G10350.2	55.056	89	35	2	42	127	28	114	1.92e-29	111
Msa0963150	AT2G18060.3	49.057	106	51	3	42	146	75	178	4.81e-28	109

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Find 51 sgRNAs with CRISPR-Local

Find 513 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATCCAAGTATCCAAA+TGG	0.424681	6_3:-87544519	Msa0963150:intron
AAGAATCCAAGTATCCAAAT+GGG	0.544681	6_3:-87544518	Msa0963150:CDS
AAGCATCAACATACTCAAGA+AGG	0.561268	6_3:-87538820	Msa0963150:CDS
AAGGACAATTTGTATCATCA+AGG	0.551816	6_3:-87538869	Msa0963150:CDS
AAGGTGGAGGAAGTTGACAA+AGG	0.605500	6_3:-87547583	Msa0963150:CDS
AAGGTGGAGGAAGTTGACAA+GGG	0.751441	6_3:-87538801	Msa0963150:CDS
ACTGAAGAGTACCTTCATGA+AGG	0.637591	6_3:-87538888	Msa0963150:CDS
AGAAAGACTGACCAAGGGGT+TGG	0.548887	6_3:+87544308	None:intergenic
AGAAGAACTTCTAAAAGTGA+AGG	0.512360	6_3:-87547527	Msa0963150:CDS
AGAGCTAGATGCTGACATTG+AGG	0.606577	6_3:-87538712	Msa0963150:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTGACTCTCTTGATTATAA+AGG	+	chr6_3:87538842-87538861	None:intergenic	30.0%
TGTATCATATATTCCACTAG+TGG	-	chr6_3:87539450-87539469	Msa0963150:intron	30.0%
CTTTAACTAGGTCAAAATCA+GGG	-	chr6_3:87539747-87539766	Msa0963150:intron	30.0%
ACTTTGTAACCACTTATCTT+TGG	+	chr6_3:87539887-87539906	None:intergenic	30.0%
AATACCAGTTTATAGGTAAG+TGG	-	chr6_3:87539974-87539993	Msa0963150:intron	30.0%
TGGTACAAAAACAAGGATTA+CGG	-	chr6_3:87539994-87540013	Msa0963150:intron	30.0%
AACATATAGTACCAGTTTCA+AGG	-	chr6_3:87540079-87540098	Msa0963150:intron	30.0%
AATACGTGGCAATCTATATA+AGG	-	chr6_3:87540122-87540141	Msa0963150:intron	30.0%
TTCCCAACTTATTCTTACAA+TGG	-	chr6_3:87540203-87540222	Msa0963150:intron	30.0%
GACCATTGTAAGAATAAGTT+GGG	+	chr6_3:87540208-87540227	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	87538671	87547629	87538671	ID=Msa0963150;Name=Msa0963150
chr6_3	mRNA	87538671	87547629	87538671	ID=Msa0963150-mRNA-1;Parent=Msa0963150;Name=Msa0963150-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0\|0\|0\|1\|1\|1\|4\|0\|218
chr6_3	exon	87547506	87547629	87547506	ID=Msa0963150-mRNA-1:exon:15860;Parent=Msa0963150-mRNA-1
chr6_3	exon	87544320	87544537	87544320	ID=Msa0963150-mRNA-1:exon:15859;Parent=Msa0963150-mRNA-1
chr6_3	exon	87544162	87544230	87544162	ID=Msa0963150-mRNA-1:exon:15858;Parent=Msa0963150-mRNA-1
chr6_3	exon	87538671	87538916	87538671	ID=Msa0963150-mRNA-1:exon:15857;Parent=Msa0963150-mRNA-1
chr6_3	CDS	87547506	87547629	87547506	ID=Msa0963150-mRNA-1:cds;Parent=Msa0963150-mRNA-1
chr6_3	CDS	87544320	87544537	87544320	ID=Msa0963150-mRNA-1:cds;Parent=Msa0963150-mRNA-1
chr6_3	CDS	87544162	87544230	87544162	ID=Msa0963150-mRNA-1:cds;Parent=Msa0963150-mRNA-1
chr6_3	CDS	87538671	87538916	87538671	ID=Msa0963150-mRNA-1:cds;Parent=Msa0963150-mRNA-1

Gene Sequence

>Msa0963150

ATGAGTTTGACCGAAGAGCCGAAGAAGGTGGAGGAAGTTGACAAAGGTAAAGTCCCTATATCCCCTGCTGATCTTGATTTAGAAGAACTTCTAAAAGTGAAGGCTTCATTGAAAGAGCTCCATGAATCCAAGTATCCAAATGGGAACCGATCTAACAGAGCTACAAACTCTGGTTACTGGAAGGCAACTGGTTTGGACAAACAAATCATGAATTCAAAGACTCGTGAAGTTGTTGGTATGAAGAAAACTCATGTTTTCTACAGAGGGAAACCACCTCATGGTTCAAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGAATGAAAATTGGGTTCGGTGTCGCATATTTCTGAAGAGGAGAGGTGGTGCTAAAAATGGAGAAGAGACATTTGTGACTGAAGAGTACCTTCATGAAGGACAATTTGTATCATCAAGGCAAAATGTTAAGCCTTCTCAAAATCAAAGCATCAACATACTCAAGAAGGTGGAGGAAGTTGACAAGGGTAAAGTCTCTATTTCCCTTGCTGATCTTGATTTAGAGGAACTTCTAAAAGTGAAGGCTTCATTGAAAGAGCTAGATGCTGACATTGAGGTCGCATCATCTTTGTTTCGCCTTGCAAAGAAACCTATATAA

Protein sequence

>Msa0963150

MSLTEEPKKVEEVDKGKVPISPADLDLEELLKVKASLKELHESKYPNGNRSNRATNSGYWKATGLDKQIMNSKTREVVGMKKTHVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVRCRIFLKRRGGAKNGEETFVTEEYLHEGQFVSSRQNVKPSQNQSINILKKVEEVDKGKVSISLADLDLEELLKVKASLKELDADIEVASSLFRLAKKPI*