Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964000 | A0A2Z6PML8 | 52.448 | 143 | 39 | 3 | 152 | 265 | 314 | 456 | 1.36e-30 | 131 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0964000 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964000 | MtrunA17_Chr8g0370511 | 50.000 | 140 | 41 | 3 | 155 | 265 | 313 | 452 | 1.88e-29 | 117 |
| Msa0964000 | MtrunA17_Chr8g0339021 | 47.857 | 140 | 44 | 3 | 155 | 265 | 307 | 446 | 3.44e-28 | 113 |
| Msa0964000 | MtrunA17_Chr7g0223531 | 48.592 | 142 | 45 | 3 | 152 | 265 | 321 | 462 | 4.21e-27 | 110 |
| Msa0964000 | MtrunA17_Chr3g0085731 | 43.312 | 157 | 55 | 5 | 138 | 265 | 315 | 466 | 5.94e-27 | 109 |
| Msa0964000 | MtrunA17_Chr8g0339041 | 68.919 | 74 | 23 | 0 | 1 | 74 | 254 | 327 | 7.67e-26 | 104 |
| Msa0964000 | MtrunA17_Chr5g0420331 | 48.592 | 142 | 44 | 4 | 153 | 265 | 312 | 453 | 3.30e-25 | 104 |
| Msa0964000 | MtrunA17_Chr8g0339031 | 41.259 | 143 | 55 | 3 | 152 | 265 | 320 | 462 | 3.70e-24 | 101 |
| Msa0964000 | MtrunA17_Chr3g0085541 | 41.401 | 157 | 58 | 5 | 138 | 265 | 314 | 465 | 3.95e-24 | 101 |
| Msa0964000 | MtrunA17_Chr3g0114401 | 43.357 | 143 | 52 | 3 | 152 | 265 | 191 | 333 | 9.17e-24 | 100 |
| Msa0964000 | MtrunA17_Chr5g0420341 | 46.154 | 143 | 48 | 3 | 152 | 265 | 311 | 453 | 2.69e-23 | 99.0 |
| Msa0964000 | MtrunA17_Chr8g0343801 | 41.259 | 143 | 55 | 3 | 152 | 265 | 315 | 457 | 1.50e-22 | 96.7 |
| Msa0964000 | MtrunA17_Chr8g0338851 | 39.437 | 142 | 57 | 3 | 153 | 265 | 214 | 355 | 1.16e-20 | 90.5 |
| Msa0964000 | MtrunA17_Chr2g0296461 | 38.571 | 140 | 57 | 3 | 152 | 262 | 97 | 236 | 2.37e-20 | 87.0 |
| Msa0964000 | MtrunA17_Chr8g0338881 | 39.161 | 143 | 58 | 3 | 152 | 265 | 339 | 481 | 2.23e-18 | 84.7 |
| Msa0964000 | MtrunA17_Chr6g0455551 | 38.732 | 142 | 58 | 4 | 152 | 264 | 386 | 527 | 2.33e-18 | 84.7 |
| Msa0964000 | MtrunA17_Chr4g0009351 | 36.620 | 142 | 61 | 4 | 152 | 264 | 222 | 363 | 2.56e-18 | 83.6 |
| Msa0964000 | MtrunA17_Chr6g0455131 | 36.620 | 142 | 61 | 3 | 152 | 264 | 394 | 535 | 1.16e-17 | 82.4 |
| Msa0964000 | MtrunA17_Chr8g0352221 | 36.364 | 143 | 62 | 3 | 152 | 265 | 304 | 446 | 3.98e-17 | 80.9 |
| Msa0964000 | MtrunA17_Chr4g0010711 | 37.931 | 145 | 58 | 3 | 152 | 265 | 820 | 963 | 4.95e-17 | 80.9 |
| Msa0964000 | MtrunA17_Chr4g0005851 | 38.028 | 142 | 59 | 4 | 152 | 264 | 339 | 480 | 6.63e-17 | 80.5 |
| Msa0964000 | MtrunA17_Chr6g0454951 | 36.364 | 143 | 62 | 4 | 152 | 265 | 396 | 538 | 1.21e-16 | 79.7 |
| Msa0964000 | MtrunA17_Chr8g0339011 | 31.068 | 206 | 102 | 5 | 99 | 265 | 242 | 446 | 3.72e-16 | 78.2 |
| Msa0964000 | MtrunA17_Chr8g0338901 | 39.535 | 129 | 49 | 3 | 166 | 265 | 345 | 473 | 1.20e-15 | 76.6 |
| Msa0964000 | MtrunA17_Chr6g0454851 | 35.664 | 143 | 63 | 4 | 152 | 265 | 402 | 544 | 1.21e-15 | 76.6 |
| Msa0964000 | MtrunA17_Chr7g0255681 | 36.111 | 144 | 62 | 4 | 152 | 265 | 1317 | 1460 | 1.40e-15 | 76.6 |
| Msa0964000 | MtrunA17_Chr4g0009141 | 37.063 | 143 | 59 | 4 | 152 | 264 | 827 | 968 | 1.45e-15 | 76.6 |
| Msa0964000 | MtrunA17_Chr4g0014831 | 34.965 | 143 | 64 | 3 | 152 | 265 | 95 | 237 | 2.53e-15 | 75.5 |
| Msa0964000 | MtrunA17_Chr6g0455031 | 36.879 | 141 | 61 | 4 | 152 | 264 | 330 | 470 | 3.81e-15 | 75.1 |
| Msa0964000 | MtrunA17_Chr8g0338981 | 35.766 | 137 | 59 | 3 | 158 | 265 | 314 | 450 | 3.88e-15 | 75.1 |
| Msa0964000 | MtrunA17_Chr6g0454961 | 35.211 | 142 | 63 | 5 | 152 | 264 | 336 | 477 | 4.31e-15 | 75.1 |
| Msa0964000 | MtrunA17_Chr8g0352211 | 34.965 | 143 | 64 | 3 | 152 | 265 | 322 | 464 | 8.60e-15 | 74.3 |
| Msa0964000 | MtrunA17_Chr4g0005871 | 37.500 | 144 | 57 | 3 | 152 | 264 | 435 | 576 | 9.07e-15 | 73.9 |
| Msa0964000 | MtrunA17_Chr6g0454931 | 33.803 | 142 | 65 | 3 | 152 | 264 | 377 | 518 | 9.63e-15 | 73.9 |
| Msa0964000 | MtrunA17_Chr4g0009301 | 35.915 | 142 | 62 | 3 | 152 | 264 | 847 | 988 | 9.95e-15 | 73.9 |
| Msa0964000 | MtrunA17_Chr5g0414761 | 37.063 | 143 | 61 | 4 | 152 | 265 | 96 | 238 | 1.31e-14 | 73.6 |
| Msa0964000 | MtrunA17_Chr4g0009101 | 34.507 | 142 | 64 | 3 | 152 | 264 | 845 | 986 | 4.04e-14 | 72.0 |
| Msa0964000 | MtrunA17_Chr6g0454901 | 34.483 | 145 | 62 | 3 | 152 | 265 | 121 | 263 | 1.82e-13 | 69.7 |
| Msa0964000 | MtrunA17_Chr6g0455191 | 33.803 | 142 | 65 | 4 | 152 | 264 | 618 | 759 | 2.42e-13 | 69.7 |
| Msa0964000 | MtrunA17_Chr5g0430531 | 35.075 | 134 | 53 | 4 | 138 | 242 | 304 | 432 | 2.70e-13 | 69.3 |
| Msa0964000 | MtrunA17_Chr4g0009241 | 35.915 | 142 | 62 | 3 | 152 | 264 | 849 | 990 | 2.73e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAGTGCGCTCCTCATTT+TGG | 0.200905 | 6_3:+89843690 | None:intergenic |
| TTTAGAAGATTATACGTTAA+AGG | 0.223459 | 6_3:-89841795 | Msa0964000:CDS |
| GCTGGTATACTCGCAGTTTC+AGG | 0.226000 | 6_3:-89843648 | Msa0964000:intron |
| TTTACTGATGATAGGGATAT+CGG | 0.328238 | 6_3:-89843401 | Msa0964000:CDS |
| TTACTGAATTTACTGATGAT+AGG | 0.337209 | 6_3:-89843409 | Msa0964000:CDS |
| TATATAAATCCTAAGTTGTT+TGG | 0.338542 | 6_3:-89842108 | Msa0964000:intron |
| GACATATGTTGGTTATTCAT+TGG | 0.343899 | 6_3:-89841761 | Msa0964000:CDS |
| CCATTCAGATATTCAGTAAC+AGG | 0.360181 | 6_3:+89843455 | None:intergenic |
| TTCTGTTGCACTTGATCGTT+GGG | 0.380421 | 6_3:+89841839 | None:intergenic |
| TATGACATTGTCAACTGATA+AGG | 0.397671 | 6_3:-89844566 | Msa0964000:CDS |
| CTAAATTCGTCTCTAGGACT+TGG | 0.408937 | 6_3:+89841968 | None:intergenic |
| AGCAATGAAGATACAAGATA+TGG | 0.422922 | 6_3:-89844425 | Msa0964000:CDS |
| TCTTGTATCTTCATTGCTGT+TGG | 0.431184 | 6_3:+89844430 | None:intergenic |
| TCCTTGTTGCGGAAAGTCCT+TGG | 0.446074 | 6_3:-89841926 | Msa0964000:CDS |
| ATCACTTAGTGCTAACCAAA+TGG | 0.448316 | 6_3:-89842037 | Msa0964000:CDS |
| CCTGTTACTGAATATCTGAA+TGG | 0.458682 | 6_3:-89843455 | Msa0964000:CDS |
| TACTGAATTTACTGATGATA+GGG | 0.463619 | 6_3:-89843408 | Msa0964000:CDS |
| TTCATTGCTGTTGGCACTCG+TGG | 0.463712 | 6_3:+89844439 | None:intergenic |
| AGCGCACTCACAGAAGTTGC+AGG | 0.467663 | 6_3:-89843679 | Msa0964000:CDS |
| TTTCTGTTGCACTTGATCGT+TGG | 0.472693 | 6_3:+89841838 | None:intergenic |
| ACAGAAGTTGCAGGACTAGC+TGG | 0.476830 | 6_3:-89843670 | Msa0964000:CDS |
| AACTGAAAAGTTCAAGTGAC+TGG | 0.485439 | 6_3:+89842007 | None:intergenic |
| AGGACTTGGTTGACCAAAGC+AGG | 0.489951 | 6_3:+89841982 | None:intergenic |
| AGTTCACTAAATTCGTCTCT+AGG | 0.494682 | 6_3:+89841962 | None:intergenic |
| TTACTGATGATAGGGATATC+GGG | 0.517135 | 6_3:-89843400 | Msa0964000:CDS |
| TACTGAATATCTGAATGGAT+TGG | 0.518723 | 6_3:-89843450 | Msa0964000:CDS |
| TTCAGTAATTTGTTGCACAC+GGG | 0.529545 | 6_3:+89843424 | None:intergenic |
| AAGTTCTGTTGTCCAAAATG+AGG | 0.557323 | 6_3:-89843702 | Msa0964000:CDS |
| AAGTTGCAGGACTAGCTGGC+TGG | 0.569931 | 6_3:-89843666 | Msa0964000:CDS |
| ATTCAGTAATTTGTTGCACA+CGG | 0.580601 | 6_3:+89843423 | None:intergenic |
| ACCAAGGACTTTCCGCAACA+AGG | 0.586440 | 6_3:+89841925 | None:intergenic |
| AAACTGAGAATCAACTTCGA+TGG | 0.589291 | 6_3:-89841818 | Msa0964000:CDS |
| CATTGAAGATGTCAGAGGAG+AGG | 0.605046 | 6_3:-89844369 | Msa0964000:intron |
| TCAGTAATTTGTTGCACACG+GGG | 0.605630 | 6_3:+89843425 | None:intergenic |
| TTATTACGACTAGAGATGAA+CGG | 0.623949 | 6_3:-89842068 | Msa0964000:CDS |
| TGTCAACTGATAAGGTTCAG+TGG | 0.649714 | 6_3:-89844558 | Msa0964000:CDS |
| TGAAGCATTGAAGATGTCAG+AGG | 0.656753 | 6_3:-89844374 | Msa0964000:CDS |
| TCTCAGATAAGTTACAACCA+AGG | 0.713401 | 6_3:+89841909 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTTTTTTTTAATTGTAAA+TGG | - | chr6_3:89843889-89843908 | Msa0964000:intron | 10.0% |
| !! | AGTATAATTAAATAAAAGAG+AGG | + | chr6_3:89843872-89843891 | None:intergenic | 15.0% |
| !! | GGACAAAAATAAAATCAAAT+GGG | + | chr6_3:89842174-89842193 | None:intergenic | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | + | chr6_3:89842256-89842275 | None:intergenic | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | + | chr6_3:89842257-89842276 | None:intergenic | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | + | chr6_3:89842258-89842277 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | - | chr6_3:89842299-89842318 | Msa0964000:intron | 20.0% |
| !! | AAGAAATGTGAAAAATACAA+AGG | - | chr6_3:89842381-89842400 | Msa0964000:intron | 20.0% |
| !! | AGAAATGTGAAAAATACAAA+GGG | - | chr6_3:89842382-89842401 | Msa0964000:intron | 20.0% |
| !! | AAAAAATGTGAAAAAGACAA+AGG | - | chr6_3:89843249-89843268 | Msa0964000:intron | 20.0% |
| !! | AAAAATGTGAAAAAGACAAA+GGG | - | chr6_3:89843250-89843269 | Msa0964000:intron | 20.0% |
| !!! | ATCTTATCCTTTATTTTTAG+TGG | + | chr6_3:89843343-89843362 | None:intergenic | 20.0% |
| !! | TAAGATACATAACATTGAAT+AGG | - | chr6_3:89843357-89843376 | Msa0964000:intron | 20.0% |
| !! | AAGATACATAACATTGAATA+GGG | - | chr6_3:89843358-89843377 | Msa0964000:intron | 20.0% |
| !!! | AATTTTGAGTTTTTTTTTCG+TGG | + | chr6_3:89844038-89844057 | None:intergenic | 20.0% |
| !! | TATATAAATCCTAAGTTGTT+TGG | - | chr6_3:89844193-89844212 | Msa0964000:intron | 20.0% |
| !! | AAAAAAATTTATCCTTGTTG+CGG | - | chr6_3:89844364-89844383 | Msa0964000:intron | 20.0% |
| !! | TTTAGAAGATTATACGTTAA+AGG | - | chr6_3:89844506-89844525 | Msa0964000:CDS | 20.0% |
| !!! | ATATACTTTTTGACATATGT+TGG | - | chr6_3:89844529-89844548 | Msa0964000:CDS | 20.0% |
| !! | TGGAACATTACTTTCATTTT+AGG | - | chr6_3:89841763-89841782 | Msa0964000:CDS | 25.0% |
| ! | TATCTGCAAACAAGAAAAAT+GGG | + | chr6_3:89841825-89841844 | None:intergenic | 25.0% |
| ! | ATATCTGCAAACAAGAAAAA+TGG | + | chr6_3:89841826-89841845 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTGTTTGCAGATA+TGG | - | chr6_3:89841825-89841844 | Msa0964000:CDS | 25.0% |
| ! | CACAAAACAGAAATCAATTT+CGG | + | chr6_3:89842067-89842086 | None:intergenic | 25.0% |
| ! | CAAAAATAAAATCAAATGGG+TGG | + | chr6_3:89842171-89842190 | None:intergenic | 25.0% |
| ! | GGGACAAAAATAAAATCAAA+TGG | + | chr6_3:89842175-89842194 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | + | chr6_3:89842209-89842228 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | chr6_3:89842210-89842229 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | + | chr6_3:89842246-89842265 | None:intergenic | 25.0% |
| ! | GAAATGTGAAAAATACAAAG+GGG | - | chr6_3:89842383-89842402 | Msa0964000:intron | 25.0% |
| ! | AAATGTGAAAAATACAAAGG+GGG | - | chr6_3:89842384-89842403 | Msa0964000:intron | 25.0% |
| !!! | TCTGATTTTTTCTTGTTGTA+TGG | - | chr6_3:89842489-89842508 | Msa0964000:intron | 25.0% |
| ! | AGAAATGCTTGAAACAATTA+TGG | + | chr6_3:89842537-89842556 | None:intergenic | 25.0% |
| ! | TTACTGAATTTACTGATGAT+AGG | - | chr6_3:89842892-89842911 | Msa0964000:intron | 25.0% |
| ! | TACTGAATTTACTGATGATA+GGG | - | chr6_3:89842893-89842912 | Msa0964000:intron | 25.0% |
| ! | TCAAATCCATAGTAAATGTA+AGG | - | chr6_3:89842969-89842988 | Msa0964000:intron | 25.0% |
| ! | CAAATCCATAGTAAATGTAA+GGG | - | chr6_3:89842970-89842989 | Msa0964000:intron | 25.0% |
| !!! | CATTTAGGGTCAAATTTTTA+GGG | + | chr6_3:89843049-89843068 | None:intergenic | 25.0% |
| !!! | ACATTTAGGGTCAAATTTTT+AGG | + | chr6_3:89843050-89843069 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | + | chr6_3:89842209-89842228 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | + | chr6_3:89842210-89842229 | None:intergenic | 25.0% |
| ! | AAGTTAGTAGTATTAGTTAG+GGG | + | chr6_3:89843124-89843143 | None:intergenic | 25.0% |
| ! | CAAGTTAGTAGTATTAGTTA+GGG | + | chr6_3:89843125-89843144 | None:intergenic | 25.0% |
| ! | ACAAGTTAGTAGTATTAGTT+AGG | + | chr6_3:89843126-89843145 | None:intergenic | 25.0% |
| ! | TTGAATACACATACAAACAA+AGG | - | chr6_3:89843167-89843186 | Msa0964000:intron | 25.0% |
| ! | AAAATGTGAAAAAGACAAAG+GGG | - | chr6_3:89843251-89843270 | Msa0964000:intron | 25.0% |
| ! | TTCAGATCCACTAAAAATAA+AGG | - | chr6_3:89843333-89843352 | Msa0964000:intron | 25.0% |
| ! | CGTTTAATGTTTCCAAAATA+TGG | + | chr6_3:89843545-89843564 | None:intergenic | 25.0% |
| !! | ATATAGAGAGATACTTTTGT+TGG | + | chr6_3:89843586-89843605 | None:intergenic | 25.0% |
| ! | AATTAAATAAAAGAGAGGAG+TGG | + | chr6_3:89843867-89843886 | None:intergenic | 25.0% |
| !! | AATACACAACACTTTTCTAT+TGG | + | chr6_3:89843958-89843977 | None:intergenic | 25.0% |
| !! | TAGTTGAAATGTTGACTAAA+TGG | + | chr6_3:89843991-89844010 | None:intergenic | 25.0% |
| ! | AAAAACTCAAAATTTAGTGC+AGG | - | chr6_3:89844044-89844063 | Msa0964000:intron | 25.0% |
| ! | CAACTTAGGATTTATATACA+GGG | + | chr6_3:89844191-89844210 | None:intergenic | 25.0% |
| ! | ACAACTTAGGATTTATATAC+AGG | + | chr6_3:89844192-89844211 | None:intergenic | 25.0% |
| AGCAATGAAGATACAAGATA+TGG | - | chr6_3:89841876-89841895 | Msa0964000:intron | 30.0% | |
| CATAAGCAATTTCCTTATCA+TGG | + | chr6_3:89841981-89842000 | None:intergenic | 30.0% | |
| !! | CGAAATTGATTTCTGTTTTG+TGG | - | chr6_3:89842065-89842084 | Msa0964000:CDS | 30.0% |
| CATCTAGTAATTTGAAAAGG+GGG | + | chr6_3:89842207-89842226 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | + | chr6_3:89842208-89842227 | None:intergenic | 30.0% | |
| CATACAAACAAAGGACAATT+TGG | - | chr6_3:89842308-89842327 | Msa0964000:intron | 30.0% | |
| AATGTGAAAAATACAAAGGG+GGG | - | chr6_3:89842385-89842404 | Msa0964000:intron | 30.0% | |
| ACCTGCAACATAAAACTAAT+CGG | + | chr6_3:89842440-89842459 | None:intergenic | 30.0% | |
| TACTGAATATCTGAATGGAT+TGG | - | chr6_3:89842851-89842870 | Msa0964000:intron | 30.0% | |
| !! | ATTCAGTAATTTGTTGCACA+CGG | + | chr6_3:89842881-89842900 | None:intergenic | 30.0% |
| TTTACTGATGATAGGGATAT+CGG | - | chr6_3:89842900-89842919 | Msa0964000:intron | 30.0% | |
| TTCTACCCTTACATTTACTA+TGG | + | chr6_3:89842978-89842997 | None:intergenic | 30.0% | |
| TGAAAAGGGGTTTACATTTA+GGG | + | chr6_3:89843063-89843082 | None:intergenic | 30.0% | |
| TTGAAAAGGGGTTTACATTT+AGG | + | chr6_3:89843064-89843083 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | + | chr6_3:89842208-89842227 | None:intergenic | 30.0% | |
| CATACAAACAAAGGACAATT+TGG | - | chr6_3:89842308-89842327 | Msa0964000:intron | 30.0% | |
| AAATGTGAAAAAGACAAAGG+GGG | - | chr6_3:89843252-89843271 | Msa0964000:intron | 30.0% | |
| !!! | ATTTTTAGTGGATCTGAAGA+TGG | + | chr6_3:89843331-89843350 | None:intergenic | 30.0% |
| TTGTGTGTTAGTATAAAGTG+TGG | - | chr6_3:89843808-89843827 | Msa0964000:intron | 30.0% | |
| TGTGTGTTAGTATAAAGTGT+GGG | - | chr6_3:89843809-89843828 | Msa0964000:intron | 30.0% | |
| TTAAAATGTGTGTTTATGCG+TGG | - | chr6_3:89843931-89843950 | Msa0964000:intron | 30.0% | |
| TAAAATGTGTGTTTATGCGT+GGG | - | chr6_3:89843932-89843951 | Msa0964000:intron | 30.0% | |
| TTATTACGACTAGAGATGAA+CGG | - | chr6_3:89844233-89844252 | Msa0964000:intron | 30.0% | |
| ! | GACATATGTTGGTTATTCAT+TGG | - | chr6_3:89844540-89844559 | Msa0964000:CDS | 30.0% |
| TCTTGTATCTTCATTGCTGT+TGG | + | chr6_3:89841874-89841893 | None:intergenic | 35.0% | |
| ATTTGTCCAATGCCATGATA+AGG | - | chr6_3:89841966-89841985 | Msa0964000:CDS | 35.0% | |
| CAATTTCCTTATCATGGCAT+TGG | + | chr6_3:89841975-89841994 | None:intergenic | 35.0% | |
| CAAATGGGTGGTTACATTAA+GGG | + | chr6_3:89842159-89842178 | None:intergenic | 35.0% | |
| TCAAATGGGTGGTTACATTA+AGG | + | chr6_3:89842160-89842179 | None:intergenic | 35.0% | |
| TGAAAAGGGGGTTACATTTA+GGG | + | chr6_3:89842195-89842214 | None:intergenic | 35.0% | |
| TTGAAAAGGGGGTTACATTT+AGG | + | chr6_3:89842196-89842215 | None:intergenic | 35.0% | |
| !!! | TCCGATTAGTTTTATGTTGC+AGG | - | chr6_3:89842436-89842455 | Msa0964000:intron | 35.0% |
| AAGTTCTGTTGTCCAAAATG+AGG | - | chr6_3:89842599-89842618 | Msa0964000:intron | 35.0% | |
| TCAGTTCACTTTCACTCTTT+CGG | + | chr6_3:89842776-89842795 | None:intergenic | 35.0% | |
| CCATTCAGATATTCAGTAAC+AGG | + | chr6_3:89842849-89842868 | None:intergenic | 35.0% | |
| CCTGTTACTGAATATCTGAA+TGG | - | chr6_3:89842846-89842865 | Msa0964000:intron | 35.0% | |
| !! | TTCAGTAATTTGTTGCACAC+GGG | + | chr6_3:89842880-89842899 | None:intergenic | 35.0% |
| TTACTGATGATAGGGATATC+GGG | - | chr6_3:89842901-89842920 | Msa0964000:intron | 35.0% | |
| ! | TATTAGTTAGGGGCATGTTT+AGG | + | chr6_3:89843114-89843133 | None:intergenic | 35.0% |
| ACAAAGGGGGTTTACATATA+GGG | - | chr6_3:89843265-89843284 | Msa0964000:intron | 35.0% | |
| ! | AACCATTGATCCAGGAATTT+TGG | - | chr6_3:89843384-89843403 | Msa0964000:intron | 35.0% |
| TTCCAAAATTCCTGGATCAA+TGG | + | chr6_3:89843389-89843408 | None:intergenic | 35.0% | |
| !! | ATCCAGGAATTTTGGAAAGT+GGG | - | chr6_3:89843392-89843411 | Msa0964000:intron | 35.0% |
| CAAAATATGGAGAATCGTAG+AGG | + | chr6_3:89843532-89843551 | None:intergenic | 35.0% | |
| ! | CTCTACGATTCTCCATATTT+TGG | - | chr6_3:89843530-89843549 | Msa0964000:intron | 35.0% |
| TTAGTATAAAGTGTGGGTGT+GGG | - | chr6_3:89843815-89843834 | Msa0964000:intron | 35.0% | |
| !! | AAGTGTTGTGTATTTTCGTG+TGG | - | chr6_3:89843964-89843983 | Msa0964000:intron | 35.0% |
| ! | AGTGTTGTGTATTTTCGTGT+GGG | - | chr6_3:89843965-89843984 | Msa0964000:intron | 35.0% |
| ATCACTTAGTGCTAACCAAA+TGG | - | chr6_3:89844264-89844283 | Msa0964000:intron | 35.0% | |
| AACTGAAAAGTTCAAGTGAC+TGG | + | chr6_3:89844297-89844316 | None:intergenic | 35.0% | |
| ! | AGTCACTTGAACTTTTCAGT+TGG | - | chr6_3:89844296-89844315 | Msa0964000:intron | 35.0% |
| AGTTCACTAAATTCGTCTCT+AGG | + | chr6_3:89844342-89844361 | None:intergenic | 35.0% | |
| TCTCAGATAAGTTACAACCA+AGG | + | chr6_3:89844395-89844414 | None:intergenic | 35.0% | |
| TTGGTTGTAACTTATCTGAG+AGG | - | chr6_3:89844394-89844413 | Msa0964000:CDS | 35.0% | |
| AAACTGAGAATCAACTTCGA+TGG | - | chr6_3:89844483-89844502 | Msa0964000:CDS | 35.0% | |
| TGTCAACTGATAAGGTTCAG+TGG | - | chr6_3:89841743-89841762 | Msa0964000:CDS | 40.0% | |
| !! | TGAAGCATTGAAGATGTCAG+AGG | - | chr6_3:89841927-89841946 | Msa0964000:CDS | 40.0% |
| TACAAAGGGGGGTTACATTA+AGG | - | chr6_3:89842396-89842415 | Msa0964000:intron | 40.0% | |
| ACAAAGGGGGGTTACATTAA+GGG | - | chr6_3:89842397-89842416 | Msa0964000:intron | 40.0% | |
| AGTTAACTAGGTTGTCACTG+CGG | - | chr6_3:89842463-89842482 | Msa0964000:intron | 40.0% | |
| !! | TCAGTAATTTGTTGCACACG+GGG | + | chr6_3:89842879-89842898 | None:intergenic | 40.0% |
| GACAAAGGGGGTTTACATAT+AGG | - | chr6_3:89843264-89843283 | Msa0964000:intron | 40.0% | |
| ACGGAGGGAGTAATAGTAAA+GGG | - | chr6_3:89843288-89843307 | Msa0964000:intron | 40.0% | |
| TAGGGTATAACCATTGATCC+AGG | - | chr6_3:89843376-89843395 | Msa0964000:intron | 40.0% | |
| !! | GATCCAGGAATTTTGGAAAG+TGG | - | chr6_3:89843391-89843410 | Msa0964000:intron | 40.0% |
| !! | TCCAGGAATTTTGGAAAGTG+GGG | - | chr6_3:89843393-89843412 | Msa0964000:intron | 40.0% |
| GTTAGTATAAAGTGTGGGTG+TGG | - | chr6_3:89843814-89843833 | Msa0964000:intron | 40.0% | |
| CTCTCGGTCTTAGTTATACA+GGG | + | chr6_3:89844103-89844122 | None:intergenic | 40.0% | |
| TCTCTCGGTCTTAGTTATAC+AGG | + | chr6_3:89844104-89844123 | None:intergenic | 40.0% | |
| !!! | GGCTTTTAATTTCCCAGACT+TGG | + | chr6_3:89844170-89844189 | None:intergenic | 40.0% |
| GTTCGCAAACCAAACAACTT+AGG | + | chr6_3:89844205-89844224 | None:intergenic | 40.0% | |
| !! | CTAAATTCGTCTCTAGGACT+TGG | + | chr6_3:89844336-89844355 | None:intergenic | 40.0% |
| CTGAGAGGACAAAACAAGAA+TGG | - | chr6_3:89844409-89844428 | Msa0964000:CDS | 40.0% | |
| TTCTGTTGCACTTGATCGTT+GGG | + | chr6_3:89844465-89844484 | None:intergenic | 40.0% | |
| TTTCTGTTGCACTTGATCGT+TGG | + | chr6_3:89844466-89844485 | None:intergenic | 40.0% | |
| CATTGAAGATGTCAGAGGAG+AGG | - | chr6_3:89841932-89841951 | Msa0964000:CDS | 45.0% | |
| TGGTTACATTAAGGGACGGA+GGG | + | chr6_3:89842151-89842170 | None:intergenic | 45.0% | |
| TGGGTGGTTACATTAAGGGA+CGG | + | chr6_3:89842155-89842174 | None:intergenic | 45.0% | |
| GTTGCAGGTGTCAGTTAACT+AGG | - | chr6_3:89842451-89842470 | Msa0964000:intron | 45.0% | |
| ATAGGGATATCGGGAATGTG+TGG | - | chr6_3:89842910-89842929 | Msa0964000:intron | 45.0% | |
| AGGGGGTTTACATATAGGGA+CGG | - | chr6_3:89843269-89843288 | Msa0964000:intron | 45.0% | |
| GGTTTACATATAGGGACGGA+GGG | - | chr6_3:89843273-89843292 | Msa0964000:intron | 45.0% | |
| GACGGAGGGAGTAATAGTAA+AGG | - | chr6_3:89843287-89843306 | Msa0964000:intron | 45.0% | |
| !! | CCAGGAATTTTGGAAAGTGG+GGG | - | chr6_3:89843394-89843413 | Msa0964000:intron | 45.0% |
| TCACTCGCATGGAAGATGAA+TGG | + | chr6_3:89843631-89843650 | None:intergenic | 45.0% | |
| ATTCATCTTCCATGCGAGTG+AGG | - | chr6_3:89843630-89843649 | Msa0964000:intron | 45.0% | |
| TTCATCTTCCATGCGAGTGA+GGG | - | chr6_3:89843631-89843650 | Msa0964000:intron | 45.0% | |
| ! | GAGGAGACAGAAGAGGTTTT+AGG | - | chr6_3:89843773-89843792 | Msa0964000:intron | 45.0% |
| ! | ATGCAAGCACAAGAGTGTGT+AGG | + | chr6_3:89844076-89844095 | None:intergenic | 45.0% |
| CGGTCTTAGTTATACAGGGA+CGG | + | chr6_3:89844099-89844118 | None:intergenic | 45.0% | |
| TAAGACCGAGAGAAGACTAC+AGG | - | chr6_3:89844111-89844130 | Msa0964000:intron | 45.0% | |
| AAGACCGAGAGAAGACTACA+GGG | - | chr6_3:89844112-89844131 | Msa0964000:intron | 45.0% | |
| TTGTCCCTGTAGTCTTCTCT+CGG | + | chr6_3:89844119-89844138 | None:intergenic | 45.0% | |
| GAGAAGACTACAGGGACAAT+AGG | - | chr6_3:89844120-89844139 | Msa0964000:intron | 45.0% | |
| CTTGGTCACATCATCGAGTA+CGG | + | chr6_3:89844152-89844171 | None:intergenic | 45.0% | |
| TCGATGATGTGACCAAGTCT+GGG | - | chr6_3:89844155-89844174 | Msa0964000:intron | 45.0% | |
| !!! | GTGACTGGTTTTCGTCCATT+TGG | + | chr6_3:89844282-89844301 | None:intergenic | 45.0% |
| !! | ACTTTTCAGTTGGCCTGCTT+TGG | - | chr6_3:89844306-89844325 | Msa0964000:intron | 45.0% |
| ! | TTCATTGCTGTTGGCACTCG+TGG | + | chr6_3:89841865-89841884 | None:intergenic | 50.0% |
| GTGGTTACATTAAGGGACGG+AGG | + | chr6_3:89842152-89842171 | None:intergenic | 50.0% | |
| AGGGGGGTTACATTAAGGGA+CGG | - | chr6_3:89842401-89842420 | Msa0964000:intron | 50.0% | |
| GGGTTACATTAAGGGACGGA+GGG | - | chr6_3:89842405-89842424 | Msa0964000:intron | 50.0% | |
| ! | TGTGAGTGCGCTCCTCATTT+TGG | + | chr6_3:89842614-89842633 | None:intergenic | 50.0% |
| ! | ACAGAAGTTGCAGGACTAGC+TGG | - | chr6_3:89842631-89842650 | Msa0964000:intron | 50.0% |
| GCTGGTATACTCGCAGTTTC+AGG | - | chr6_3:89842653-89842672 | Msa0964000:intron | 50.0% | |
| TATCGGGAATGTGTGGCTCT+AGG | - | chr6_3:89842917-89842936 | Msa0964000:intron | 50.0% | |
| GGGTTTACATATAGGGACGG+AGG | - | chr6_3:89843272-89843291 | Msa0964000:intron | 50.0% | |
| CCCCCACTTTCCAAAATTCC+TGG | + | chr6_3:89843397-89843416 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr6_3:89843698-89843717 | Msa0964000:CDS | 50.0% | |
| AGAGAGAGAGGAGACAGAAG+AGG | - | chr6_3:89843766-89843785 | Msa0964000:intron | 50.0% | |
| AGAGAGGAGTGGAAACGTGA+GGG | + | chr6_3:89843856-89843875 | None:intergenic | 50.0% | |
| AAGAGAGGAGTGGAAACGTG+AGG | + | chr6_3:89843857-89843876 | None:intergenic | 50.0% | |
| CTCGATGATGTGACCAAGTC+TGG | - | chr6_3:89844154-89844173 | Msa0964000:intron | 50.0% | |
| ! | AGGACTTGGTTGACCAAAGC+AGG | + | chr6_3:89844322-89844341 | None:intergenic | 50.0% |
| TCCTTGTTGCGGAAAGTCCT+TGG | - | chr6_3:89844375-89844394 | Msa0964000:CDS | 50.0% | |
| ACCAAGGACTTTCCGCAACA+AGG | + | chr6_3:89844379-89844398 | None:intergenic | 50.0% | |
| GGGGTTACATTAAGGGACGG+AGG | - | chr6_3:89842404-89842423 | Msa0964000:intron | 55.0% | |
| AGCGCACTCACAGAAGTTGC+AGG | - | chr6_3:89842622-89842641 | Msa0964000:intron | 55.0% | |
| !! | AAGTTGCAGGACTAGCTGGC+TGG | - | chr6_3:89842635-89842654 | Msa0964000:intron | 55.0% |
| ATCTTCCATGCGAGTGAGGG+AGG | - | chr6_3:89843634-89843653 | Msa0964000:intron | 55.0% | |
| TCTTCCATGCGAGTGAGGGA+GGG | - | chr6_3:89843635-89843654 | Msa0964000:intron | 55.0% | |
| TCTCTCTCTCTCGTCTGCTC+AGG | + | chr6_3:89843689-89843708 | None:intergenic | 55.0% | |
| ATCACCCTCCCTCACTCGCA+TGG | + | chr6_3:89843642-89843661 | None:intergenic | 60.0% | |
| ATGCGAGTGAGGGAGGGTGA+TGG | - | chr6_3:89843641-89843660 | Msa0964000:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 89841736 | 89844587 | 89841736 | ID=Msa0964000;Name=Msa0964000 |
| chr6_3 | mRNA | 89841736 | 89844587 | 89841736 | ID=Msa0964000-mRNA-1;Parent=Msa0964000;Name=Msa0964000-mRNA-1;_AED=0.41;_eAED=0.49;_QI=0|0|0|0.5|0.4|0.33|6|0|265 |
| chr6_3 | exon | 89844370 | 89844587 | 89844370 | ID=Msa0964000-mRNA-1:exon:16192;Parent=Msa0964000-mRNA-1 |
| chr6_3 | exon | 89843649 | 89843742 | 89843649 | ID=Msa0964000-mRNA-1:exon:16191;Parent=Msa0964000-mRNA-1 |
| chr6_3 | exon | 89843397 | 89843543 | 89843397 | ID=Msa0964000-mRNA-1:exon:16190;Parent=Msa0964000-mRNA-1 |
| chr6_3 | exon | 89842499 | 89842504 | 89842499 | ID=Msa0964000-mRNA-1:exon:16189;Parent=Msa0964000-mRNA-1 |
| chr6_3 | exon | 89841924 | 89842115 | 89841924 | ID=Msa0964000-mRNA-1:exon:16188;Parent=Msa0964000-mRNA-1 |
| chr6_3 | exon | 89841736 | 89841876 | 89841736 | ID=Msa0964000-mRNA-1:exon:16187;Parent=Msa0964000-mRNA-1 |
| chr6_3 | CDS | 89844370 | 89844587 | 89844370 | ID=Msa0964000-mRNA-1:cds;Parent=Msa0964000-mRNA-1 |
| chr6_3 | CDS | 89843649 | 89843742 | 89843649 | ID=Msa0964000-mRNA-1:cds;Parent=Msa0964000-mRNA-1 |
| chr6_3 | CDS | 89843397 | 89843543 | 89843397 | ID=Msa0964000-mRNA-1:cds;Parent=Msa0964000-mRNA-1 |
| chr6_3 | CDS | 89842499 | 89842504 | 89842499 | ID=Msa0964000-mRNA-1:cds;Parent=Msa0964000-mRNA-1 |
| chr6_3 | CDS | 89841924 | 89842115 | 89841924 | ID=Msa0964000-mRNA-1:cds;Parent=Msa0964000-mRNA-1 |
| chr6_3 | CDS | 89841736 | 89841876 | 89841736 | ID=Msa0964000-mRNA-1:cds;Parent=Msa0964000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
