AlfalfaGEDB | Msa0964080

M. sativa cultivar zhongmu-4 / Msa0964080

KEGG: K15032
GO: -
PFAM: PF02536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0964080	A0A2Z6MDL0	76.378	127	30	0	44	170	136	262	1.74e-61	203

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TFs/TRs:

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Gene ID	Type	Classification
Msa0964080	TR	mTERF

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0964080	MtrunA17_Chr8g0339041	77.419	124	28	0	47	170	139	262	5.38e-64	200

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0964080	AT1G79220.1	46.094	128	68	1	44	170	162	289	3.03e-32	119

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Find 37 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGTGGTGACGTTAAT+AGG	0.278279	6_3:-90237003	Msa0964080:CDS
AAGAGTTAGGCGTATTGAAA+AGG	0.444866	6_3:-90237140	Msa0964080:CDS
AGAAGATGGTATATATAAGC+AGG	0.519672	6_3:-90237056	Msa0964080:CDS
AGAGTTAGGCGTATTGAAAA+GGG	0.532449	6_3:-90237139	Msa0964080:CDS
AGGCGTATTGAAAAGGGACT+TGG	0.493691	6_3:-90237133	Msa0964080:CDS
AGTCCAAAACCTGATCCACT+AGG	0.566504	6_3:+90238503	None:intergenic
ATGGTATATATAAGCAGGAC+TGG	0.475180	6_3:-90237051	Msa0964080:CDS
ATTACTCAAGGAGGAGGTCC+AGG	0.491187	6_3:-90238467	Msa0964080:CDS
CAACGAAGGGTTTCTTGCAA+TGG	0.530280	6_3:+90237209	None:intergenic
CAAGATGGAAAGATTACTCA+AGG	0.582815	6_3:-90238479	Msa0964080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCTATTAGCGAAAAAATTG+CGG	-	chr6_3:90236980-90236999	Msa0964080:CDS	30.0%
ATCCTGCATGTTATATAAAC+TGG	-	chr6_3:90237136-90237155	Msa0964080:CDS	30.0%
ATCCAGTTTATATAACATGC+AGG	+	chr6_3:90237141-90237160	None:intergenic	30.0%
TCAGTTATATGGTTAACTCT+CGG	+	chr6_3:90237293-90237312	None:intergenic	30.0%
AGACTATGTACTCAGTTATA+TGG	+	chr6_3:90237304-90237323	None:intergenic	30.0%
TCCTATCTAGACTTACAAAA+CGG	+	chr6_3:90237333-90237352	None:intergenic	30.0%
ACGACATTATGTAACTTTGT+GGG	-	chr6_3:90237455-90237474	Msa0964080:intron	30.0%
AGCTTCAATAATTGCAACAA+AGG	+	chr6_3:90237840-90237859	None:intergenic	30.0%
ATTCAACCTGATATTTGGTT+GGG	+	chr6_3:90237903-90237922	None:intergenic	30.0%
AATTCAACCTGATATTTGGT+TGG	+	chr6_3:90237904-90237923	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	90236870	90238558	90236870	ID=Msa0964080;Name=Msa0964080
chr6_3	mRNA	90236870	90238558	90236870	ID=Msa0964080-mRNA-1;Parent=Msa0964080;Name=Msa0964080-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|170
chr6_3	exon	90238424	90238558	90238424	ID=Msa0964080-mRNA-1:exon:16234;Parent=Msa0964080-mRNA-1
chr6_3	exon	90236870	90237247	90236870	ID=Msa0964080-mRNA-1:exon:16233;Parent=Msa0964080-mRNA-1
chr6_3	CDS	90238424	90238558	90238424	ID=Msa0964080-mRNA-1:cds;Parent=Msa0964080-mRNA-1
chr6_3	CDS	90236870	90237247	90236870	ID=Msa0964080-mRNA-1:cds;Parent=Msa0964080-mRNA-1

Gene Sequence

>Msa0964080

ATGATTTTCTTTGATACTGCACTTGTGATTGGCCCTAGTGGATCAGGTTTTGGACTGCAAGATGGAAAGATTACTCAAGGAGGAGGTCCAGGTGTTCCATGCGAAGGAGAGTCTATTAGCGAAAAAATTGCGGCAGAAATGCTTCATAAGACCATTGCAAGAAACCCTTCGTTGCTATGTGAAAATGGCTATGACATTAAAGGTATTGTTGCACAATATGAAGAGTTAGGCGTATTGAAAAGGGACTTGGTTCAAATGCTGATTTTGCAGCCGGCGATTATTACAAGGACTTCCTTTGATGATGAGAAGATGGTATATATAAGCAGGACTGGGGTTTTGAAGGATGCAAAATTGTACAAATATGTGGTGACGTTAATAGGAATCTCTCGCGTGGAAATGATTCACGCAAAGGTGTTAAATCTTACAAAGTTTGGTTTATCGGATGATGAGATAGTTGGTCTTTTTGGTAAGTCTCCTAATATTATGACATTGTCAACTGATATGGCACAATGA

Protein sequence

>Msa0964080

MIFFDTALVIGPSGSGFGLQDGKITQGGGPGVPCEGESISEKIAAEMLHKTIARNPSLLCENGYDIKGIVAQYEELGVLKRDLVQMLILQPAIITRTSFDDEKMVYISRTGVLKDAKLYKYVVTLIGISRVEMIHAKVLNLTKFGLSDDEIVGLFGKSPNIMTLSTDMAQ*