AlfalfaGEDB | Msa0964770

M. sativa cultivar zhongmu-4 / Msa0964770

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0964770	XP_003620675.2	76.506	166	30	4	2	164	260	419	1.78e-78	249

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0964770	sp\|Q9LK03\|PERK2_ARATH	56.522	161	61	3	1	154	515	673	2.03e-50	174

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0964770	MtrunA17_Chr6g0485721	76.506	166	30	4	2	164	260	419	1.64e-82	249
Msa0964770	MtrunA17_Chr6g0485761	63.750	160	50	3	1	154	456	613	1.51e-59	196
Msa0964770	MtrunA17_Chr3g0144481	52.500	160	70	3	1	154	250	409	1.57e-45	154
Msa0964770	MtrunA17_Chr7g0221191	50.000	156	70	2	1	154	556	705	4.34e-43	151
Msa0964770	MtrunA17_Chr5g0413511	47.771	157	74	2	1	155	220	370	3.38e-42	144
Msa0964770	MtrunA17_Chr8g0365701	54.015	137	58	3	6	139	20	154	5.35e-42	139
Msa0964770	MtrunA17_Chr8g0373501	49.686	159	72	4	1	152	498	655	1.60e-39	141
Msa0964770	MtrunA17_Chr0c01g0489481	44.118	170	71	4	1	150	492	657	9.72e-37	133
Msa0964770	MtrunA17_Chr5g0403891	50.641	156	67	6	1	147	417	571	2.26e-31	118
Msa0964770	MtrunA17_Chr1g0183041	45.833	144	67	3	1	144	515	647	3.54e-31	117

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0964770	AT1G52290.1	55.758	165	64	4	1	158	304	466	5.99e-51	170
Msa0964770	AT3G24550.1	54.037	161	65	3	1	154	441	599	9.66e-51	172
Msa0964770	AT3G24540.1	59.854	137	51	2	1	135	344	478	1.09e-49	166
Msa0964770	AT2G18470.1	49.689	161	71	4	1	154	445	602	1.91e-41	146
Msa0964770	AT2G18470.3	49.689	161	71	4	1	154	445	602	1.91e-41	146
Msa0964770	AT2G18470.2	49.689	161	71	4	1	154	445	602	1.91e-41	146
Msa0964770	AT5G38560.1	49.359	156	71	2	1	154	502	651	1.03e-40	145
Msa0964770	AT1G70460.1	48.077	156	73	2	1	154	514	663	2.73e-40	144
Msa0964770	AT4G34440.2	47.826	161	74	4	1	154	473	630	3.15e-40	143
Msa0964770	AT4G34440.1	47.826	161	74	4	1	154	473	630	3.15e-40	143

Showing 1 to 10 of 501 entries

Previous1 2 3 4 5…51Next

Find 75 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGCATCAGACATCAA+AGG	0.543009	6_3:+91764197	Msa0964770:CDS
AAAATTACATGGTTGATCCA+AGG	0.544749	6_3:+91762745	Msa0964770:CDS
AAATAAAAGCCTTAAAGAGT+AGG	0.535452	6_3:-91764440	None:intergenic
AAATAGCATCAGACATCAAA+GGG	0.491223	6_3:+91764198	Msa0964770:CDS
AAATCTAAATCTTAATCAAG+GGG	0.619760	6_3:+91764097	Msa0964770:CDS
AAGAAGCTGAAAGCTGGTAG+CGG	0.600019	6_3:+91761372	Msa0964770:five_prime_UTR
AAGAATAGGACAACCAACAA+TGG	0.645674	6_3:+91761642	Msa0964770:five_prime_UTR
AATGGAAATGAGAACAGTCA+AGG	0.618015	6_3:+91764228	Msa0964770:exon
AATTCAATTGTACCATCCAT+AGG	0.555806	6_3:-91764330	None:intergenic
ACAAGACTGAGAATTGCTTT+AGG	0.400432	6_3:+91761673	Msa0964770:five_prime_UTR

Showing 1 to 10 of 75 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGGAATTCCAATGTATTGTT+AGG	-	chr6_3:91761526-91761545	None:intergenic	30.0%
AGTATCAAATTTCTGTTGAC+AGG	+	chr6_3:91761965-91761984	Msa0964770:five_prime_UTR	30.0%
AGATACACACAAAAATGAGT+CGG	-	chr6_3:91762505-91762524	None:intergenic	30.0%
TAAAAGTTAGGGTTATGCTA+GGG	-	chr6_3:91762665-91762684	None:intergenic	30.0%
TTAAAAGTTAGGGTTATGCT+AGG	-	chr6_3:91762666-91762685	None:intergenic	30.0%
GATGGTTGTAGTTAAAAGTT+AGG	-	chr6_3:91762677-91762696	None:intergenic	30.0%
AAAATTACATGGTTGATCCA+AGG	+	chr6_3:91762745-91762764	Msa0964770:CDS	30.0%
AACAAATTCTTCACATTACC+TGG	-	chr6_3:91762866-91762885	None:intergenic	30.0%
CAGTTGAAAATAAACAGGTA+GGG	-	chr6_3:91762899-91762918	None:intergenic	30.0%
ACAGTTGAAAATAAACAGGT+AGG	-	chr6_3:91762900-91762919	None:intergenic	30.0%

Showing 1 to 10 of 173 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	91761326	91764558	91761326	ID=Msa0964770;Name=Msa0964770
chr6_3	mRNA	91761326	91764558	91761326	ID=Msa0964770-mRNA-1;Parent=Msa0964770;Name=Msa0964770-mRNA-1;_AED=0.25;_eAED=0.25;_QI=564\|1\|1\|1\|0.6\|0.5\|6\|320\|164
chr6_3	exon	91761326	91761559	91761326	ID=Msa0964770-mRNA-1:exon:16610;Parent=Msa0964770-mRNA-1
chr6_3	exon	91761631	91761730	91761631	ID=Msa0964770-mRNA-1:exon:16611;Parent=Msa0964770-mRNA-1
chr6_3	exon	91761820	91762063	91761820	ID=Msa0964770-mRNA-1:exon:16612;Parent=Msa0964770-mRNA-1
chr6_3	exon	91762295	91762442	91762295	ID=Msa0964770-mRNA-1:exon:16613;Parent=Msa0964770-mRNA-1
chr6_3	exon	91762711	91762866	91762711	ID=Msa0964770-mRNA-1:exon:16614;Parent=Msa0964770-mRNA-1
chr6_3	exon	91764062	91764558	91764062	ID=Msa0964770-mRNA-1:exon:16615;Parent=Msa0964770-mRNA-1
chr6_3	five_prime_UTR	91761326	91761559	91761326	ID=Msa0964770-mRNA-1:five_prime_utr;Parent=Msa0964770-mRNA-1
chr6_3	five_prime_UTR	91761631	91761730	91761631	ID=Msa0964770-mRNA-1:five_prime_utr;Parent=Msa0964770-mRNA-1
chr6_3	five_prime_UTR	91761820	91762049	91761820	ID=Msa0964770-mRNA-1:five_prime_utr;Parent=Msa0964770-mRNA-1
chr6_3	CDS	91762050	91762063	91762050	ID=Msa0964770-mRNA-1:cds;Parent=Msa0964770-mRNA-1
chr6_3	CDS	91762295	91762442	91762295	ID=Msa0964770-mRNA-1:cds;Parent=Msa0964770-mRNA-1
chr6_3	CDS	91762711	91762866	91762711	ID=Msa0964770-mRNA-1:cds;Parent=Msa0964770-mRNA-1
chr6_3	CDS	91764062	91764238	91764062	ID=Msa0964770-mRNA-1:cds;Parent=Msa0964770-mRNA-1
chr6_3	three_prime_UTR	91764239	91764558	91764239	ID=Msa0964770-mRNA-1:three_prime_utr;Parent=Msa0964770-mRNA-1

Gene Sequence

>Msa0964770

ATGGGAACTTTCGGGTATATGGATCCAGAATATGCTGGTAGTGGACAACTTACTGACAAATCAGATGTTTTCTCTTATGGAGTCGTTCTCCTTGAGTTGTTAACAGGACGAGTGCCGATTGATAAAGCTAACCCTCACATGCACGTTAGTTTGGTTGAGTGGGCTAGGCCTTTTCTCATGAGTGCTTCAAAAGGAAAAAATTACATGGTTGATCCAAGGCTTCGGAATGAATTTGACCGTAATGAGATGACTCGTATGGTAGCATGCGCTGCAGCTTGCACACGTCAGTCAGCAAAGGATCGACCAAAGATGAGCCAGGTTGTGCGAGTTCTGGAAGGAGCTTTGTCAATAGCAAATCTAAATCTTAATCAAGGGGTTACACGTGGACCCAGCAGGGGTTACAGCAGAGACTACAATAGTCAGCAAGAAAACATGACAAAGTTGAAGTTGAAAAAAATAGCATCAGACATCAAAGGGAAATTGAAATGGAAATGA

Protein sequence

>Msa0964770

MGTFGYMDPEYAGSGQLTDKSDVFSYGVVLLELLTGRVPIDKANPHMHVSLVEWARPFLMSASKGKNYMVDPRLRNEFDRNEMTRMVACAAACTRQSAKDRPKMSQVVRVLEGALSIANLNLNQGVTRGPSRGYSRDYNSQQENMTKLKLKKIASDIKGKLKWK*