Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0967730 | XP_024633826.2 | 65.449 | 301 | 63 | 5 | 1 | 300 | 1 | 261 | 4.51e-131 | 383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0967730 | sp|Q9LVU8|RKD4_ARATH | 52.381 | 105 | 50 | 0 | 193 | 297 | 148 | 252 | 2.70e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0967730 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0967730 | MtrunA17_Chr3g0127001 | 65.449 | 301 | 63 | 5 | 1 | 300 | 1 | 261 | 4.15e-135 | 383 |
| Msa0967730 | MtrunA17_Chr1g0182631 | 64.338 | 272 | 58 | 5 | 30 | 300 | 1 | 234 | 1.47e-117 | 337 |
| Msa0967730 | MtrunA17_Chr3g0092141 | 47.321 | 112 | 53 | 1 | 193 | 298 | 59 | 170 | 4.04e-29 | 110 |
| Msa0967730 | MtrunA17_Chr4g0060761 | 45.370 | 108 | 50 | 1 | 198 | 296 | 160 | 267 | 2.01e-27 | 107 |
| Msa0967730 | MtrunA17_Chr5g0406901 | 37.719 | 114 | 58 | 1 | 193 | 293 | 201 | 314 | 1.46e-19 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0967730 | AT5G53040.1 | 52.381 | 105 | 50 | 0 | 193 | 297 | 148 | 252 | 2.74e-32 | 120 |
| Msa0967730 | AT5G66990.1 | 49.550 | 111 | 45 | 1 | 198 | 297 | 164 | 274 | 2.00e-31 | 119 |
| Msa0967730 | AT1G18790.1 | 44.094 | 127 | 54 | 2 | 178 | 294 | 120 | 239 | 6.73e-28 | 109 |
| Msa0967730 | AT1G74480.1 | 46.364 | 110 | 49 | 1 | 191 | 290 | 133 | 242 | 4.07e-27 | 107 |
| Msa0967730 | AT4G35590.2 | 33.824 | 136 | 70 | 2 | 179 | 294 | 171 | 306 | 1.16e-17 | 82.0 |
| Msa0967730 | AT4G35590.1 | 33.824 | 136 | 70 | 2 | 179 | 294 | 221 | 356 | 1.69e-17 | 82.4 |
| Msa0967730 | AT5G16100.2 | 38.462 | 91 | 48 | 1 | 187 | 269 | 348 | 438 | 2.49e-12 | 67.4 |
Find 54 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGTAAAGCAACATTTA+AGG | 0.169846 | 6_3:-97833055 | None:intergenic |
| CATTGCAATTTGATGATATA+AGG | 0.198698 | 6_3:+97833376 | Msa0967730:CDS |
| TCGGTGTAATGCCCCATTTC+AGG | 0.239025 | 6_3:-97833072 | None:intergenic |
| AAATGTTGCTTTACCTGAAA+TGG | 0.239415 | 6_3:+97833059 | Msa0967730:CDS |
| TCTTCATTCAATTCCATTTC+AGG | 0.242189 | 6_3:-97833862 | None:intergenic |
| TTGTAGCCTTGAGCGATTTC+AGG | 0.264499 | 6_3:-97832450 | None:intergenic |
| GCCTTGAGCGATTTCAGGTT+GGG | 0.343692 | 6_3:-97832445 | None:intergenic |
| AACTACTTTGATCAAGGTAT+TGG | 0.343714 | 6_3:-97833014 | None:intergenic |
| TCAGGTAAAGCAACATTTAA+GGG | 0.355156 | 6_3:-97833054 | None:intergenic |
| AATGTTGCTTTACCTGAAAT+GGG | 0.356567 | 6_3:+97833060 | Msa0967730:CDS |
| TTGTGAACAAACAAGAGAAA+TGG | 0.359147 | 6_3:+97833166 | Msa0967730:CDS |
| ATGATTTCATTGAGTTTGAT+TGG | 0.364629 | 6_3:+97832908 | Msa0967730:CDS |
| GCTTACTTGTCTGTGTTGTT+TGG | 0.372451 | 6_3:-97832498 | None:intergenic |
| AGCAATACTCTTCCCTTTGT+CGG | 0.387658 | 6_3:-97833091 | None:intergenic |
| GTTGAGGCTTCCAAGAAAAC+AGG | 0.393183 | 6_3:+97833126 | Msa0967730:CDS |
| CCCTGCATCTATTCTTCAAA+AGG | 0.394587 | 6_3:-97833455 | None:intergenic |
| GTTAGAGAAACTTCCTGAAA+TGG | 0.395826 | 6_3:+97833849 | Msa0967730:CDS |
| GAGTGGATTTGTTGAAGCTT+CGG | 0.430431 | 6_3:+97833230 | Msa0967730:CDS |
| TGTTGTGTGATGCAGGAAAT+GGG | 0.433682 | 6_3:+97833784 | Msa0967730:intron |
| GGCAAACGAGGTTGCTATGA+TGG | 0.435987 | 6_3:+97833810 | Msa0967730:CDS |
| TGTGAACAAACAAGAGAAAT+GGG | 0.437906 | 6_3:+97833167 | Msa0967730:CDS |
| TGTACTCATCGACAACCTTA+AGG | 0.442882 | 6_3:+97833524 | Msa0967730:CDS |
| GTACTAGAACTAGTATCATA+AGG | 0.476033 | 6_3:+97833340 | Msa0967730:CDS |
| AACTCAATGAAATCATCAAA+TGG | 0.477184 | 6_3:-97832901 | None:intergenic |
| AAATCGCTCAAGGCTACAAC+TGG | 0.479818 | 6_3:+97832454 | Msa0967730:CDS |
| CTGCTACTTGGCAATGGTAG+TGG | 0.480934 | 6_3:-97833318 | None:intergenic |
| TGATTTCATTGAGTTTGATT+GGG | 0.486276 | 6_3:+97832909 | Msa0967730:CDS |
| CTAGTTCTAGTACTGCTACT+TGG | 0.488715 | 6_3:-97833330 | None:intergenic |
| GGGAGCTCAACATCACTAGA+TGG | 0.489772 | 6_3:+97833475 | Msa0967730:CDS |
| AGGTTGAAGCTCAAGGGTTG+AGG | 0.489859 | 6_3:-97833945 | None:intergenic |
| TGTGATGCAGGAAATGGGTT+TGG | 0.499818 | 6_3:+97833789 | Msa0967730:intron |
| TTGTGAAGAAAGAGGTTGAA+GGG | 0.507686 | 6_3:+97833280 | Msa0967730:CDS |
| TCTCAAAACTACTTTGATCA+AGG | 0.511922 | 6_3:-97833020 | None:intergenic |
| CTATGATGGAGAAGAAGAAA+AGG | 0.520048 | 6_3:+97833824 | Msa0967730:CDS |
| AAGATCATTGAACCACCCAT+TGG | 0.537266 | 6_3:-97832968 | None:intergenic |
| AGCCTTGAGCGATTTCAGGT+TGG | 0.544838 | 6_3:-97832446 | None:intergenic |
| TTTGTGAAGAAAGAGGTTGA+AGG | 0.545050 | 6_3:+97833279 | Msa0967730:CDS |
| GGTTGAAGCTCAAGGGTTGA+GGG | 0.549829 | 6_3:-97833944 | None:intergenic |
| TGTGAAGAAAGAGGTTGAAG+GGG | 0.555743 | 6_3:+97833281 | Msa0967730:CDS |
| ATGGGGCATTACACCGACAA+AGG | 0.558093 | 6_3:+97833078 | Msa0967730:CDS |
| TGGGGCATTACACCGACAAA+GGG | 0.567564 | 6_3:+97833079 | Msa0967730:CDS |
| GAACTAGTATCATAAGGAAG+AGG | 0.575464 | 6_3:+97833346 | Msa0967730:CDS |
| CTAGTACTGCTACTTGGCAA+TGG | 0.587993 | 6_3:-97833324 | None:intergenic |
| CCTGCATCTATTCTTCAAAA+GGG | 0.589493 | 6_3:-97833454 | None:intergenic |
| ACATTGAGTGCTGCTGAGAG+TGG | 0.594289 | 6_3:+97833213 | Msa0967730:CDS |
| GGGAAGAGTATTGCTGAGAG+TGG | 0.605279 | 6_3:+97833099 | Msa0967730:CDS |
| GGAAATGGGTTTGGCAAACG+AGG | 0.606744 | 6_3:+97833798 | Msa0967730:intron |
| ACCCAACCTGAAATCGCTCA+AGG | 0.612787 | 6_3:+97832444 | Msa0967730:CDS |
| ATGTTGCTTTACCTGAAATG+GGG | 0.616338 | 6_3:+97833061 | Msa0967730:CDS |
| GATGGCCTCACAGAAAATTG+AGG | 0.623093 | 6_3:+97833493 | Msa0967730:CDS |
| ATGAAGAAATCAAGAAGCTG+AGG | 0.626377 | 6_3:+97833878 | Msa0967730:CDS |
| GCTGCTAAGAAAATGAATGT+TGG | 0.631864 | 6_3:+97833426 | Msa0967730:CDS |
| GCACTCAATGTCAATGACAG+TGG | 0.693921 | 6_3:-97833201 | None:intergenic |
| AGGTTGGGTGAAGAACTCCA+TGG | 0.704568 | 6_3:-97832430 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAAAAAGTTAAAAAA+AGG | - | chr6_3:97832840-97832859 | None:intergenic | 10.0% |
| !!! | ATAAATAATTTTTTATCAAC+TGG | + | chr6_3:97833741-97833760 | Msa0967730:intron | 10.0% |
| !! | CAAAAAAAAAAGTTAAAAAA+AGG | - | chr6_3:97832840-97832859 | None:intergenic | 10.0% |
| !!! | ATAAATAATTTTTTATCAAC+TGG | + | chr6_3:97833741-97833760 | Msa0967730:intron | 10.0% |
| !! | GTAAAAAACAAAACAAGTTA+GGG | - | chr6_3:97832618-97832637 | None:intergenic | 20.0% |
| !! | TTTATCTATTACTTTGACTA+TGG | + | chr6_3:97832656-97832675 | Msa0967730:intron | 20.0% |
| !! | AAAGTTAAAAAAAGGGAAAA+CGG | - | chr6_3:97832832-97832851 | None:intergenic | 20.0% |
| !!! | TTTTGATGTTCCTTTAAAAA+TGG | + | chr6_3:97833404-97833423 | Msa0967730:CDS | 20.0% |
| !! | AACATAAAGAATATACCTTA+AGG | - | chr6_3:97833542-97833561 | None:intergenic | 20.0% |
| !! | GTAAAAAACAAAACAAGTTA+GGG | - | chr6_3:97832618-97832637 | None:intergenic | 20.0% |
| !! | TTTATCTATTACTTTGACTA+TGG | + | chr6_3:97832656-97832675 | Msa0967730:intron | 20.0% |
| !! | AAAGTTAAAAAAAGGGAAAA+CGG | - | chr6_3:97832832-97832851 | None:intergenic | 20.0% |
| !!! | TTTTGATGTTCCTTTAAAAA+TGG | + | chr6_3:97833404-97833423 | Msa0967730:CDS | 20.0% |
| !! | AACATAAAGAATATACCTTA+AGG | - | chr6_3:97833542-97833561 | None:intergenic | 20.0% |
| ! | GGTAAAAAACAAAACAAGTT+AGG | - | chr6_3:97832619-97832638 | None:intergenic | 25.0% |
| ! | TAAAAATCGAATAAGAACAG+AGG | - | chr6_3:97832640-97832659 | None:intergenic | 25.0% |
| !! | TTTTAATGTGTACAGAATCA+TGG | + | chr6_3:97832870-97832889 | Msa0967730:intron | 25.0% |
| ! | AACTCAATGAAATCATCAAA+TGG | - | chr6_3:97832904-97832923 | None:intergenic | 25.0% |
| ! | ATGATTTCATTGAGTTTGAT+TGG | + | chr6_3:97832908-97832927 | Msa0967730:CDS | 25.0% |
| ! | TGATTTCATTGAGTTTGATT+GGG | + | chr6_3:97832909-97832928 | Msa0967730:CDS | 25.0% |
| ! | TGGTGTAAAAATGATTACTT+TGG | - | chr6_3:97832951-97832970 | None:intergenic | 25.0% |
| !!! | AGTAATCATTTTTACACCAA+TGG | + | chr6_3:97832952-97832971 | Msa0967730:CDS | 25.0% |
| !!! | GTAATCATTTTTACACCAAT+GGG | + | chr6_3:97832953-97832972 | Msa0967730:CDS | 25.0% |
| !! | CATTGCAATTTGATGATATA+AGG | + | chr6_3:97833376-97833395 | Msa0967730:CDS | 25.0% |
| !! | TTTGAAGTACTTAACAATGT+GGG | - | chr6_3:97833577-97833596 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTACTTAACAATG+TGG | - | chr6_3:97833578-97833597 | None:intergenic | 25.0% |
| ! | TTCCTAACATTATCTTTGTT+TGG | + | chr6_3:97833598-97833617 | Msa0967730:intron | 25.0% |
| ! | ATCCAAACAAAGATAATGTT+AGG | - | chr6_3:97833603-97833622 | None:intergenic | 25.0% |
| ! | TTTCAATTGTCATTCAAAGT+GGG | - | chr6_3:97833661-97833680 | None:intergenic | 25.0% |
| ! | ATTTCAATTGTCATTCAAAG+TGG | - | chr6_3:97833662-97833681 | None:intergenic | 25.0% |
| !!! | ATTTTTTATCAACTGGTCAT+AGG | + | chr6_3:97833748-97833767 | Msa0967730:intron | 25.0% |
| ! | GGTAAAAAACAAAACAAGTT+AGG | - | chr6_3:97832619-97832638 | None:intergenic | 25.0% |
| ! | TAAAAATCGAATAAGAACAG+AGG | - | chr6_3:97832640-97832659 | None:intergenic | 25.0% |
| !! | TTTTAATGTGTACAGAATCA+TGG | + | chr6_3:97832870-97832889 | Msa0967730:intron | 25.0% |
| ! | AACTCAATGAAATCATCAAA+TGG | - | chr6_3:97832904-97832923 | None:intergenic | 25.0% |
| ! | ATGATTTCATTGAGTTTGAT+TGG | + | chr6_3:97832908-97832927 | Msa0967730:CDS | 25.0% |
| ! | TGATTTCATTGAGTTTGATT+GGG | + | chr6_3:97832909-97832928 | Msa0967730:CDS | 25.0% |
| ! | TGGTGTAAAAATGATTACTT+TGG | - | chr6_3:97832951-97832970 | None:intergenic | 25.0% |
| !!! | AGTAATCATTTTTACACCAA+TGG | + | chr6_3:97832952-97832971 | Msa0967730:CDS | 25.0% |
| !!! | GTAATCATTTTTACACCAAT+GGG | + | chr6_3:97832953-97832972 | Msa0967730:CDS | 25.0% |
| !! | CATTGCAATTTGATGATATA+AGG | + | chr6_3:97833376-97833395 | Msa0967730:CDS | 25.0% |
| !! | TTTGAAGTACTTAACAATGT+GGG | - | chr6_3:97833577-97833596 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTACTTAACAATG+TGG | - | chr6_3:97833578-97833597 | None:intergenic | 25.0% |
| ! | TTCCTAACATTATCTTTGTT+TGG | + | chr6_3:97833598-97833617 | Msa0967730:intron | 25.0% |
| ! | ATCCAAACAAAGATAATGTT+AGG | - | chr6_3:97833603-97833622 | None:intergenic | 25.0% |
| ! | TTTCAATTGTCATTCAAAGT+GGG | - | chr6_3:97833661-97833680 | None:intergenic | 25.0% |
| ! | ATTTCAATTGTCATTCAAAG+TGG | - | chr6_3:97833662-97833681 | None:intergenic | 25.0% |
| !!! | ATTTTTTATCAACTGGTCAT+AGG | + | chr6_3:97833748-97833767 | Msa0967730:intron | 25.0% |
| AAAGAATGAACATCGAATCA+TGG | - | chr6_3:97832549-97832568 | None:intergenic | 30.0% | |
| AACTACTTTGATCAAGGTAT+TGG | - | chr6_3:97833017-97833036 | None:intergenic | 30.0% | |
| TCTCAAAACTACTTTGATCA+AGG | - | chr6_3:97833023-97833042 | None:intergenic | 30.0% | |
| TCAGGTAAAGCAACATTTAA+GGG | - | chr6_3:97833057-97833076 | None:intergenic | 30.0% | |
| TTCAGGTAAAGCAACATTTA+AGG | - | chr6_3:97833058-97833077 | None:intergenic | 30.0% | |
| !! | AAATGTTGCTTTACCTGAAA+TGG | + | chr6_3:97833059-97833078 | Msa0967730:CDS | 30.0% |
| !! | AATGTTGCTTTACCTGAAAT+GGG | + | chr6_3:97833060-97833079 | Msa0967730:CDS | 30.0% |
| !! | AAACTGATTTCCTGTTTTCT+TGG | - | chr6_3:97833139-97833158 | None:intergenic | 30.0% |
| TTGTGAACAAACAAGAGAAA+TGG | + | chr6_3:97833166-97833185 | Msa0967730:CDS | 30.0% | |
| TGTGAACAAACAAGAGAAAT+GGG | + | chr6_3:97833167-97833186 | Msa0967730:CDS | 30.0% | |
| GTACTAGAACTAGTATCATA+AGG | + | chr6_3:97833340-97833359 | Msa0967730:CDS | 30.0% | |
| !!! | TTCTTAGCAGCCATTTTTAA+AGG | - | chr6_3:97833417-97833436 | None:intergenic | 30.0% |
| ! | TTGAAGTACTTAACAATGTG+GGG | - | chr6_3:97833576-97833595 | None:intergenic | 30.0% |
| TGAAACTTGAAACTGTAGTT+TGG | + | chr6_3:97833688-97833707 | Msa0967730:intron | 30.0% | |
| GAAACTTGAAACTGTAGTTT+GGG | + | chr6_3:97833689-97833708 | Msa0967730:intron | 30.0% | |
| !! | ATTATTTTGTTGTGTGATGC+AGG | + | chr6_3:97833777-97833796 | Msa0967730:intron | 30.0% |
| TCTTCATTCAATTCCATTTC+AGG | - | chr6_3:97833865-97833884 | None:intergenic | 30.0% | |
| AAAGAATGAACATCGAATCA+TGG | - | chr6_3:97832549-97832568 | None:intergenic | 30.0% | |
| AACTACTTTGATCAAGGTAT+TGG | - | chr6_3:97833017-97833036 | None:intergenic | 30.0% | |
| TCTCAAAACTACTTTGATCA+AGG | - | chr6_3:97833023-97833042 | None:intergenic | 30.0% | |
| TCAGGTAAAGCAACATTTAA+GGG | - | chr6_3:97833057-97833076 | None:intergenic | 30.0% | |
| TTCAGGTAAAGCAACATTTA+AGG | - | chr6_3:97833058-97833077 | None:intergenic | 30.0% | |
| !! | AAATGTTGCTTTACCTGAAA+TGG | + | chr6_3:97833059-97833078 | Msa0967730:CDS | 30.0% |
| !! | AATGTTGCTTTACCTGAAAT+GGG | + | chr6_3:97833060-97833079 | Msa0967730:CDS | 30.0% |
| !! | AAACTGATTTCCTGTTTTCT+TGG | - | chr6_3:97833139-97833158 | None:intergenic | 30.0% |
| TTGTGAACAAACAAGAGAAA+TGG | + | chr6_3:97833166-97833185 | Msa0967730:CDS | 30.0% | |
| TGTGAACAAACAAGAGAAAT+GGG | + | chr6_3:97833167-97833186 | Msa0967730:CDS | 30.0% | |
| GTACTAGAACTAGTATCATA+AGG | + | chr6_3:97833340-97833359 | Msa0967730:CDS | 30.0% | |
| !!! | TTCTTAGCAGCCATTTTTAA+AGG | - | chr6_3:97833417-97833436 | None:intergenic | 30.0% |
| ! | TTGAAGTACTTAACAATGTG+GGG | - | chr6_3:97833576-97833595 | None:intergenic | 30.0% |
| TGAAACTTGAAACTGTAGTT+TGG | + | chr6_3:97833688-97833707 | Msa0967730:intron | 30.0% | |
| GAAACTTGAAACTGTAGTTT+GGG | + | chr6_3:97833689-97833708 | Msa0967730:intron | 30.0% | |
| !! | ATTATTTTGTTGTGTGATGC+AGG | + | chr6_3:97833777-97833796 | Msa0967730:intron | 30.0% |
| TCTTCATTCAATTCCATTTC+AGG | - | chr6_3:97833865-97833884 | None:intergenic | 30.0% | |
| CATGGTTGTTGAAATGAAAC+TGG | - | chr6_3:97832531-97832550 | None:intergenic | 35.0% | |
| AGTTAGGGTGATGTAGATTA+AGG | - | chr6_3:97832603-97832622 | None:intergenic | 35.0% | |
| AATGTTCCACACATCATTCT+CGG | - | chr6_3:97832751-97832770 | None:intergenic | 35.0% | |
| !! | ATCATTTTTACACCAATGGG+TGG | + | chr6_3:97832956-97832975 | Msa0967730:CDS | 35.0% |
| !! | ATGTTGCTTTACCTGAAATG+GGG | + | chr6_3:97833061-97833080 | Msa0967730:CDS | 35.0% |
| ! | AAAAACTGAAAGTGGGTTTG+TGG | + | chr6_3:97833254-97833273 | Msa0967730:CDS | 35.0% |
| ! | TGTGGATTTTGTGAAGAAAG+AGG | + | chr6_3:97833272-97833291 | Msa0967730:CDS | 35.0% |
| TTTGTGAAGAAAGAGGTTGA+AGG | + | chr6_3:97833279-97833298 | Msa0967730:CDS | 35.0% | |
| TTGTGAAGAAAGAGGTTGAA+GGG | + | chr6_3:97833280-97833299 | Msa0967730:CDS | 35.0% | |
| GAACTAGTATCATAAGGAAG+AGG | + | chr6_3:97833346-97833365 | Msa0967730:CDS | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | + | chr6_3:97833426-97833445 | Msa0967730:CDS | 35.0% | |
| CCTGCATCTATTCTTCAAAA+GGG | - | chr6_3:97833457-97833476 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATAGATGCA+GGG | + | chr6_3:97833455-97833474 | Msa0967730:CDS | 35.0% |
| ! | TGAAGTACTTAACAATGTGG+GGG | - | chr6_3:97833575-97833594 | None:intergenic | 35.0% |
| GAGCATTAGACTCAAATTGT+AGG | + | chr6_3:97833628-97833647 | Msa0967730:intron | 35.0% | |
| ! | CTATGATGGAGAAGAAGAAA+AGG | + | chr6_3:97833824-97833843 | Msa0967730:CDS | 35.0% |
| GTTAGAGAAACTTCCTGAAA+TGG | + | chr6_3:97833849-97833868 | Msa0967730:CDS | 35.0% | |
| ATGAAGAAATCAAGAAGCTG+AGG | + | chr6_3:97833878-97833897 | Msa0967730:CDS | 35.0% | |
| CATGGTTGTTGAAATGAAAC+TGG | - | chr6_3:97832531-97832550 | None:intergenic | 35.0% | |
| AGTTAGGGTGATGTAGATTA+AGG | - | chr6_3:97832603-97832622 | None:intergenic | 35.0% | |
| AATGTTCCACACATCATTCT+CGG | - | chr6_3:97832751-97832770 | None:intergenic | 35.0% | |
| !! | ATCATTTTTACACCAATGGG+TGG | + | chr6_3:97832956-97832975 | Msa0967730:CDS | 35.0% |
| !! | ATGTTGCTTTACCTGAAATG+GGG | + | chr6_3:97833061-97833080 | Msa0967730:CDS | 35.0% |
| ! | AAAAACTGAAAGTGGGTTTG+TGG | + | chr6_3:97833254-97833273 | Msa0967730:CDS | 35.0% |
| ! | TGTGGATTTTGTGAAGAAAG+AGG | + | chr6_3:97833272-97833291 | Msa0967730:CDS | 35.0% |
| TTTGTGAAGAAAGAGGTTGA+AGG | + | chr6_3:97833279-97833298 | Msa0967730:CDS | 35.0% | |
| TTGTGAAGAAAGAGGTTGAA+GGG | + | chr6_3:97833280-97833299 | Msa0967730:CDS | 35.0% | |
| GAACTAGTATCATAAGGAAG+AGG | + | chr6_3:97833346-97833365 | Msa0967730:CDS | 35.0% | |
| GCTGCTAAGAAAATGAATGT+TGG | + | chr6_3:97833426-97833445 | Msa0967730:CDS | 35.0% | |
| CCTGCATCTATTCTTCAAAA+GGG | - | chr6_3:97833457-97833476 | None:intergenic | 35.0% | |
| !! | CCTTTTGAAGAATAGATGCA+GGG | + | chr6_3:97833455-97833474 | Msa0967730:CDS | 35.0% |
| ! | TGAAGTACTTAACAATGTGG+GGG | - | chr6_3:97833575-97833594 | None:intergenic | 35.0% |
| GAGCATTAGACTCAAATTGT+AGG | + | chr6_3:97833628-97833647 | Msa0967730:intron | 35.0% | |
| ! | CTATGATGGAGAAGAAGAAA+AGG | + | chr6_3:97833824-97833843 | Msa0967730:CDS | 35.0% |
| GTTAGAGAAACTTCCTGAAA+TGG | + | chr6_3:97833849-97833868 | Msa0967730:CDS | 35.0% | |
| ATGAAGAAATCAAGAAGCTG+AGG | + | chr6_3:97833878-97833897 | Msa0967730:CDS | 35.0% | |
| ! | GCTTACTTGTCTGTGTTGTT+TGG | - | chr6_3:97832501-97832520 | None:intergenic | 40.0% |
| ATCAACCTCGAAAGTCGTAA+CGG | - | chr6_3:97832775-97832794 | None:intergenic | 40.0% | |
| AAGATCATTGAACCACCCAT+TGG | - | chr6_3:97832971-97832990 | None:intergenic | 40.0% | |
| AGCAATACTCTTCCCTTTGT+CGG | - | chr6_3:97833094-97833113 | None:intergenic | 40.0% | |
| !! | GAGTGGATTTGTTGAAGCTT+CGG | + | chr6_3:97833230-97833249 | Msa0967730:CDS | 40.0% |
| CTTCGGCAAAAACTGAAAGT+GGG | + | chr6_3:97833247-97833266 | Msa0967730:CDS | 40.0% | |
| TGTGAAGAAAGAGGTTGAAG+GGG | + | chr6_3:97833281-97833300 | Msa0967730:CDS | 40.0% | |
| !! | CTAGTTCTAGTACTGCTACT+TGG | - | chr6_3:97833333-97833352 | None:intergenic | 40.0% |
| !! | CCCTTTTGAAGAATAGATGC+AGG | + | chr6_3:97833454-97833473 | Msa0967730:CDS | 40.0% |
| CCCTGCATCTATTCTTCAAA+AGG | - | chr6_3:97833458-97833477 | None:intergenic | 40.0% | |
| ! | AAGCTCCTCAATTTTCTGTG+AGG | - | chr6_3:97833501-97833520 | None:intergenic | 40.0% |
| TGTACTCATCGACAACCTTA+AGG | + | chr6_3:97833524-97833543 | Msa0967730:CDS | 40.0% | |
| ! | GAAGTACTTAACAATGTGGG+GGG | - | chr6_3:97833574-97833593 | None:intergenic | 40.0% |
| TAGACTCAAATTGTAGGACC+AGG | + | chr6_3:97833634-97833653 | Msa0967730:intron | 40.0% | |
| ACTTGAAACTGTAGTTTGGG+TGG | + | chr6_3:97833692-97833711 | Msa0967730:intron | 40.0% | |
| !! | TTTGGGTGGAGCATTTTTGT+TGG | + | chr6_3:97833706-97833725 | Msa0967730:intron | 40.0% |
| TTGTTGTGTGATGCAGGAAA+TGG | + | chr6_3:97833783-97833802 | Msa0967730:intron | 40.0% | |
| TGTTGTGTGATGCAGGAAAT+GGG | + | chr6_3:97833784-97833803 | Msa0967730:intron | 40.0% | |
| ! | GCTTACTTGTCTGTGTTGTT+TGG | - | chr6_3:97832501-97832520 | None:intergenic | 40.0% |
| ATCAACCTCGAAAGTCGTAA+CGG | - | chr6_3:97832775-97832794 | None:intergenic | 40.0% | |
| AAGATCATTGAACCACCCAT+TGG | - | chr6_3:97832971-97832990 | None:intergenic | 40.0% | |
| AGCAATACTCTTCCCTTTGT+CGG | - | chr6_3:97833094-97833113 | None:intergenic | 40.0% | |
| !! | GAGTGGATTTGTTGAAGCTT+CGG | + | chr6_3:97833230-97833249 | Msa0967730:CDS | 40.0% |
| CTTCGGCAAAAACTGAAAGT+GGG | + | chr6_3:97833247-97833266 | Msa0967730:CDS | 40.0% | |
| TGTGAAGAAAGAGGTTGAAG+GGG | + | chr6_3:97833281-97833300 | Msa0967730:CDS | 40.0% | |
| !! | CTAGTTCTAGTACTGCTACT+TGG | - | chr6_3:97833333-97833352 | None:intergenic | 40.0% |
| !! | CCCTTTTGAAGAATAGATGC+AGG | + | chr6_3:97833454-97833473 | Msa0967730:CDS | 40.0% |
| CCCTGCATCTATTCTTCAAA+AGG | - | chr6_3:97833458-97833477 | None:intergenic | 40.0% | |
| ! | AAGCTCCTCAATTTTCTGTG+AGG | - | chr6_3:97833501-97833520 | None:intergenic | 40.0% |
| TGTACTCATCGACAACCTTA+AGG | + | chr6_3:97833524-97833543 | Msa0967730:CDS | 40.0% | |
| ! | GAAGTACTTAACAATGTGGG+GGG | - | chr6_3:97833574-97833593 | None:intergenic | 40.0% |
| TAGACTCAAATTGTAGGACC+AGG | + | chr6_3:97833634-97833653 | Msa0967730:intron | 40.0% | |
| ACTTGAAACTGTAGTTTGGG+TGG | + | chr6_3:97833692-97833711 | Msa0967730:intron | 40.0% | |
| !! | TTTGGGTGGAGCATTTTTGT+TGG | + | chr6_3:97833706-97833725 | Msa0967730:intron | 40.0% |
| TTGTTGTGTGATGCAGGAAA+TGG | + | chr6_3:97833783-97833802 | Msa0967730:intron | 40.0% | |
| TGTTGTGTGATGCAGGAAAT+GGG | + | chr6_3:97833784-97833803 | Msa0967730:intron | 40.0% | |
| ! | TTGTAGCCTTGAGCGATTTC+AGG | - | chr6_3:97832453-97832472 | None:intergenic | 45.0% |
| AAATCGCTCAAGGCTACAAC+TGG | + | chr6_3:97832454-97832473 | Msa0967730:CDS | 45.0% | |
| AGTCTTCCGAGAATGATGTG+TGG | + | chr6_3:97832742-97832761 | Msa0967730:intron | 45.0% | |
| !!! | TGCTGAGAGTGGTTTTGTTG+AGG | + | chr6_3:97833110-97833129 | Msa0967730:CDS | 45.0% |
| GTTGAGGCTTCCAAGAAAAC+AGG | + | chr6_3:97833126-97833145 | Msa0967730:CDS | 45.0% | |
| GCACTCAATGTCAATGACAG+TGG | - | chr6_3:97833204-97833223 | None:intergenic | 45.0% | |
| GCTTCGGCAAAAACTGAAAG+TGG | + | chr6_3:97833246-97833265 | Msa0967730:CDS | 45.0% | |
| ! | CTAGTACTGCTACTTGGCAA+TGG | - | chr6_3:97833327-97833346 | None:intergenic | 45.0% |
| GATGGCCTCACAGAAAATTG+AGG | + | chr6_3:97833493-97833512 | Msa0967730:CDS | 45.0% | |
| TTGTCATTCAAAGTGGGTCC+TGG | - | chr6_3:97833655-97833674 | None:intergenic | 45.0% | |
| ! | TGTGATGCAGGAAATGGGTT+TGG | + | chr6_3:97833789-97833808 | Msa0967730:intron | 45.0% |
| ! | TTGTAGCCTTGAGCGATTTC+AGG | - | chr6_3:97832453-97832472 | None:intergenic | 45.0% |
| AAATCGCTCAAGGCTACAAC+TGG | + | chr6_3:97832454-97832473 | Msa0967730:CDS | 45.0% | |
| AGTCTTCCGAGAATGATGTG+TGG | + | chr6_3:97832742-97832761 | Msa0967730:intron | 45.0% | |
| !!! | TGCTGAGAGTGGTTTTGTTG+AGG | + | chr6_3:97833110-97833129 | Msa0967730:CDS | 45.0% |
| GTTGAGGCTTCCAAGAAAAC+AGG | + | chr6_3:97833126-97833145 | Msa0967730:CDS | 45.0% | |
| GCACTCAATGTCAATGACAG+TGG | - | chr6_3:97833204-97833223 | None:intergenic | 45.0% | |
| GCTTCGGCAAAAACTGAAAG+TGG | + | chr6_3:97833246-97833265 | Msa0967730:CDS | 45.0% | |
| ! | CTAGTACTGCTACTTGGCAA+TGG | - | chr6_3:97833327-97833346 | None:intergenic | 45.0% |
| GATGGCCTCACAGAAAATTG+AGG | + | chr6_3:97833493-97833512 | Msa0967730:CDS | 45.0% | |
| TTGTCATTCAAAGTGGGTCC+TGG | - | chr6_3:97833655-97833674 | None:intergenic | 45.0% | |
| ! | TGTGATGCAGGAAATGGGTT+TGG | + | chr6_3:97833789-97833808 | Msa0967730:intron | 45.0% |
| !! | AAAAAAAAAAGTTAAAAAAA+GGG | - | chr6_3:97832839-97832858 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAGTTAAAAAAA+GGG | - | chr6_3:97832839-97832858 | None:intergenic | 5.0% |
| ACCCAACCTGAAATCGCTCA+AGG | + | chr6_3:97832444-97832463 | Msa0967730:CDS | 50.0% | |
| !! | GCCTTGAGCGATTTCAGGTT+GGG | - | chr6_3:97832448-97832467 | None:intergenic | 50.0% |
| ! | AGCCTTGAGCGATTTCAGGT+TGG | - | chr6_3:97832449-97832468 | None:intergenic | 50.0% |
| CATTGCCGTTACGACTTTCG+AGG | + | chr6_3:97832767-97832786 | Msa0967730:intron | 50.0% | |
| TCGGTGTAATGCCCCATTTC+AGG | - | chr6_3:97833075-97833094 | None:intergenic | 50.0% | |
| ! | ATGGGGCATTACACCGACAA+AGG | + | chr6_3:97833078-97833097 | Msa0967730:CDS | 50.0% |
| ! | TGGGGCATTACACCGACAAA+GGG | + | chr6_3:97833079-97833098 | Msa0967730:CDS | 50.0% |
| !! | GGGAAGAGTATTGCTGAGAG+TGG | + | chr6_3:97833099-97833118 | Msa0967730:CDS | 50.0% |
| ! | ACATTGAGTGCTGCTGAGAG+TGG | + | chr6_3:97833213-97833232 | Msa0967730:CDS | 50.0% |
| ! | CTGCTACTTGGCAATGGTAG+TGG | - | chr6_3:97833321-97833340 | None:intergenic | 50.0% |
| GGGAGCTCAACATCACTAGA+TGG | + | chr6_3:97833475-97833494 | Msa0967730:CDS | 50.0% | |
| ! | GGAAATGGGTTTGGCAAACG+AGG | + | chr6_3:97833798-97833817 | Msa0967730:intron | 50.0% |
| GGCAAACGAGGTTGCTATGA+TGG | + | chr6_3:97833810-97833829 | Msa0967730:CDS | 50.0% | |
| ACCCAACCTGAAATCGCTCA+AGG | + | chr6_3:97832444-97832463 | Msa0967730:CDS | 50.0% | |
| !! | GCCTTGAGCGATTTCAGGTT+GGG | - | chr6_3:97832448-97832467 | None:intergenic | 50.0% |
| ! | AGCCTTGAGCGATTTCAGGT+TGG | - | chr6_3:97832449-97832468 | None:intergenic | 50.0% |
| CATTGCCGTTACGACTTTCG+AGG | + | chr6_3:97832767-97832786 | Msa0967730:intron | 50.0% | |
| TCGGTGTAATGCCCCATTTC+AGG | - | chr6_3:97833075-97833094 | None:intergenic | 50.0% | |
| ! | ATGGGGCATTACACCGACAA+AGG | + | chr6_3:97833078-97833097 | Msa0967730:CDS | 50.0% |
| ! | TGGGGCATTACACCGACAAA+GGG | + | chr6_3:97833079-97833098 | Msa0967730:CDS | 50.0% |
| !! | GGGAAGAGTATTGCTGAGAG+TGG | + | chr6_3:97833099-97833118 | Msa0967730:CDS | 50.0% |
| ! | ACATTGAGTGCTGCTGAGAG+TGG | + | chr6_3:97833213-97833232 | Msa0967730:CDS | 50.0% |
| ! | CTGCTACTTGGCAATGGTAG+TGG | - | chr6_3:97833321-97833340 | None:intergenic | 50.0% |
| GGGAGCTCAACATCACTAGA+TGG | + | chr6_3:97833475-97833494 | Msa0967730:CDS | 50.0% | |
| ! | GGAAATGGGTTTGGCAAACG+AGG | + | chr6_3:97833798-97833817 | Msa0967730:intron | 50.0% |
| GGCAAACGAGGTTGCTATGA+TGG | + | chr6_3:97833810-97833829 | Msa0967730:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 97832432 | 97833957 | 97832432 | ID=Msa0967730;Name=Msa0967730 |
| chr6_3 | mRNA | 97832432 | 97833957 | 97832432 | ID=Msa0967730-mRNA-1;Parent=Msa0967730;Name=Msa0967730-mRNA-1;_AED=0.10;_eAED=0.11;_QI=0|0|0|1|1|1|3|0|300 |
| chr6_3 | exon | 97832432 | 97832514 | 97832432 | ID=Msa0967730-mRNA-1:exon:18217;Parent=Msa0967730-mRNA-1 |
| chr6_3 | exon | 97832885 | 97833545 | 97832885 | ID=Msa0967730-mRNA-1:exon:18218;Parent=Msa0967730-mRNA-1 |
| chr6_3 | exon | 97833799 | 97833957 | 97833799 | ID=Msa0967730-mRNA-1:exon:18219;Parent=Msa0967730-mRNA-1 |
| chr6_3 | CDS | 97832432 | 97832514 | 97832432 | ID=Msa0967730-mRNA-1:cds;Parent=Msa0967730-mRNA-1 |
| chr6_3 | CDS | 97832885 | 97833545 | 97832885 | ID=Msa0967730-mRNA-1:cds;Parent=Msa0967730-mRNA-1 |
| chr6_3 | CDS | 97833799 | 97833957 | 97833799 | ID=Msa0967730-mRNA-1:cds;Parent=Msa0967730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
