Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968400 | XP_003618052.1 | 90.157 | 254 | 23 | 1 | 1 | 252 | 1 | 254 | 9.99e-163 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0968400 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968400 | MtrunA17_Chr5g0448221 | 90.157 | 254 | 23 | 1 | 1 | 252 | 1 | 254 | 9.19e-167 | 462 |
| Msa0968400 | MtrunA17_Chr2g0331601 | 30.374 | 214 | 94 | 8 | 18 | 207 | 105 | 287 | 9.38e-15 | 73.2 |
| Msa0968400 | MtrunA17_Chr1g0169561 | 32.039 | 206 | 84 | 9 | 44 | 202 | 14 | 210 | 1.58e-13 | 69.3 |
| Msa0968400 | MtrunA17_Chr1g0169521 | 31.282 | 195 | 85 | 7 | 49 | 202 | 24 | 210 | 3.76e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0968400 | AT5G56200.1 | 44.048 | 84 | 41 | 1 | 60 | 137 | 77 | 160 | 1.50e-12 | 67.4 |
| Msa0968400 | AT2G26940.1 | 33.981 | 103 | 43 | 1 | 62 | 139 | 49 | 151 | 8.08e-12 | 64.7 |
Find 51 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATATTATTATCCTTATT+AGG | 0.131951 | 6_3:-98750216 | None:intergenic |
| ATACCCCTCCATTCCCTTTC+AGG | 0.172402 | 6_3:-98750189 | None:intergenic |
| GTGACCATGTAAAGCCTTAT+TGG | 0.177322 | 6_3:-98750154 | None:intergenic |
| ATCATCAATAACCAATTCTT+TGG | 0.220906 | 6_3:-98750286 | None:intergenic |
| CAATATTATTATCCTTATTA+GGG | 0.247792 | 6_3:-98750215 | None:intergenic |
| CATCAAACTTATTCTTCTTT+TGG | 0.256389 | 6_3:-98749725 | None:intergenic |
| AATAACCAATTCTTTGGAAT+TGG | 0.272420 | 6_3:-98750280 | None:intergenic |
| TCATCTTGATGATGATCCTT+TGG | 0.317224 | 6_3:-98749940 | None:intergenic |
| CGACAACTTCAATGAGGATT+TGG | 0.318999 | 6_3:+98750425 | Msa0968400:CDS |
| TTTAGGTGTGGAAAAGGATT+AGG | 0.327731 | 6_3:+98750012 | Msa0968400:CDS |
| TGCATCCAATTCCAAAGAAT+TGG | 0.334606 | 6_3:+98750275 | Msa0968400:CDS |
| CTTTCCCTAGAGCTTGACTA+TGG | 0.341322 | 6_3:-98750050 | None:intergenic |
| TTGATGATGAATCAAAATCT+TGG | 0.371768 | 6_3:+98750301 | Msa0968400:CDS |
| GAGGGGTATGAACCCTAATA+AGG | 0.375613 | 6_3:+98750203 | Msa0968400:CDS |
| TACCCCTCCATTCCCTTTCA+GGG | 0.375926 | 6_3:-98750188 | None:intergenic |
| AAAGAACTTCCAATCCAATA+AGG | 0.383910 | 6_3:+98750140 | Msa0968400:CDS |
| GTTGTCGTGTAAATGTTTAT+CGG | 0.409444 | 6_3:-98750409 | None:intergenic |
| TGATGATGAATCAAAATCTT+GGG | 0.427675 | 6_3:+98750302 | Msa0968400:CDS |
| CATGTAAAGCCTTATTGGAT+TGG | 0.438633 | 6_3:-98750149 | None:intergenic |
| TTTGGATGATGAGGATAAGA+AGG | 0.451348 | 6_3:+98750443 | Msa0968400:CDS |
| CAATCCAATAAGGCTTTACA+TGG | 0.457233 | 6_3:+98750150 | Msa0968400:CDS |
| GCTAATTGCAATTCTAATGA+TGG | 0.457837 | 6_3:+98750093 | Msa0968400:CDS |
| GCACGAAGATTGTTTAAAAC+CGG | 0.468350 | 6_3:+98750324 | Msa0968400:CDS |
| CCTAGTACTAGTGGTCTTGT+TGG | 0.468849 | 6_3:+98750477 | Msa0968400:CDS |
| CAAAAGAAGAATAAGTTTGA+TGG | 0.471977 | 6_3:+98749726 | Msa0968400:CDS |
| AGAATCCATAGTCAAGCTCT+AGG | 0.477759 | 6_3:+98750045 | Msa0968400:CDS |
| CATGAGATCTCACCCTGAAA+GGG | 0.502988 | 6_3:+98750176 | Msa0968400:CDS |
| CCAACAAGACCACTAGTACT+AGG | 0.509402 | 6_3:-98750477 | None:intergenic |
| TTGTTTAAAACCGGTAAAAG+AGG | 0.519380 | 6_3:+98750333 | Msa0968400:CDS |
| ACATGAGATCTCACCCTGAA+AGG | 0.521597 | 6_3:+98750175 | Msa0968400:CDS |
| AAGGATCATCATCAAGATGA+AGG | 0.523519 | 6_3:+98749943 | Msa0968400:CDS |
| TGATGGTGGTAGGATACATC+AGG | 0.528563 | 6_3:+98749743 | Msa0968400:CDS |
| TAGTCAAGCTCTAGGGAAAG+AGG | 0.530133 | 6_3:+98750053 | Msa0968400:CDS |
| AGAATGACAATAACAAAAGA+AGG | 0.532053 | 6_3:+98750523 | Msa0968400:CDS |
| AGGTGTGGAAAAGGATTAGG+TGG | 0.533754 | 6_3:+98750015 | Msa0968400:CDS |
| CAATGAGGATTTGGATGATG+AGG | 0.536568 | 6_3:+98750434 | Msa0968400:CDS |
| ATTAATAATGCAATGATACA+TGG | 0.541586 | 6_3:-98753374 | None:intergenic |
| TTTGTTATAGCTATGCTCAT+CGG | 0.552405 | 6_3:+98753329 | Msa0968400:intron |
| AGAATAAGTTTGATGGTGGT+AGG | 0.553715 | 6_3:+98749733 | Msa0968400:CDS |
| GATCTCACCCTGAAAGGGAA+TGG | 0.563550 | 6_3:+98750181 | Msa0968400:CDS |
| GAATCCATAGTCAAGCTCTA+GGG | 0.567403 | 6_3:+98750046 | Msa0968400:CDS |
| TCACCCTGAAAGGGAATGGA+GGG | 0.580204 | 6_3:+98750185 | Msa0968400:CDS |
| CTCACCCTGAAAGGGAATGG+AGG | 0.583418 | 6_3:+98750184 | Msa0968400:CDS |
| TAACAAAAGAAGGAAGAAGC+TGG | 0.586820 | 6_3:+98750533 | Msa0968400:CDS |
| GGTAAAAGAGGTCGTTCGAG+TGG | 0.603484 | 6_3:+98750345 | Msa0968400:CDS |
| AGTCAAGCTCTAGGGAAAGA+GGG | 0.609576 | 6_3:+98750054 | Msa0968400:CDS |
| TTTACACGACAACTTCAATG+AGG | 0.617038 | 6_3:+98750419 | Msa0968400:CDS |
| AAGAAGAATAAGTTTGATGG+TGG | 0.622051 | 6_3:+98749729 | Msa0968400:CDS |
| AATGTTGTACCTAGTACTAG+TGG | 0.625803 | 6_3:+98750468 | Msa0968400:CDS |
| CACCCTGAAAGGGAATGGAG+GGG | 0.655548 | 6_3:+98750186 | Msa0968400:CDS |
| AGAGGGTGAGTCGAAAGCAA+AGG | 0.661254 | 6_3:+98750071 | Msa0968400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGTAACAAAATTTTT+AGG | + | chr6_3:98749995-98750014 | Msa0968400:CDS | 10.0% |
| !!! | AGTATTTTTTTCTATAAATA+AGG | + | chr6_3:98752042-98752061 | Msa0968400:intron | 10.0% |
| !!! | ACATTTTAATAAAATATTTC+TGG | + | chr6_3:98752943-98752962 | Msa0968400:intron | 10.0% |
| !!! | TTTTCTTTTAATAGAATTCT+AGG | + | chr6_3:98749842-98749861 | Msa0968400:intron | 15.0% |
| !!! | TTTCTTTTAATAGAATTCTA+GGG | + | chr6_3:98749843-98749862 | Msa0968400:intron | 15.0% |
| !! | CAATATTATTATCCTTATTA+GGG | - | chr6_3:98750218-98750237 | None:intergenic | 15.0% |
| !! | TCAATATTATTATCCTTATT+AGG | - | chr6_3:98750219-98750238 | None:intergenic | 15.0% |
| !!! | ATTGATTTTAAGAGAAAAAA+GGG | + | chr6_3:98752160-98752179 | Msa0968400:intron | 15.0% |
| !!! | TTTTTATATCATATATCTCT+CGG | - | chr6_3:98752842-98752861 | None:intergenic | 15.0% |
| !! | TAAAGTTTATGAAAAACCAA+AGG | + | chr6_3:98749924-98749943 | Msa0968400:CDS | 20.0% |
| !!! | GGAATTTTGAATTATTATGA+GGG | - | chr6_3:98750986-98751005 | None:intergenic | 20.0% |
| !!! | TGGAATTTTGAATTATTATG+AGG | - | chr6_3:98750987-98751006 | None:intergenic | 20.0% |
| !! | AAATAGAGATCGTAATAATT+CGG | - | chr6_3:98751023-98751042 | None:intergenic | 20.0% |
| !! | TTATCCAAAACAACTTATTA+CGG | + | chr6_3:98751117-98751136 | Msa0968400:intron | 20.0% |
| !!! | ATAAGCTGTTTTTTGAAAAA+AGG | - | chr6_3:98751306-98751325 | None:intergenic | 20.0% |
| !!! | CATTGATTTTAAGAGAAAAA+AGG | + | chr6_3:98752159-98752178 | Msa0968400:intron | 20.0% |
| !!! | AGATTAAAGATTTTGAAGAA+TGG | - | chr6_3:98752372-98752391 | None:intergenic | 20.0% |
| !! | ATGTTAAGACTAATGTTTAT+TGG | + | chr6_3:98752602-98752621 | Msa0968400:intron | 20.0% |
| !! | TAATGTAAAGACAAAAATTG+AGG | + | chr6_3:98752701-98752720 | Msa0968400:intron | 20.0% |
| !!! | TAACAGAAAAAGACAATTTT+TGG | + | chr6_3:98752790-98752809 | Msa0968400:intron | 20.0% |
| !! | GAGATATATGATATAAAAAG+TGG | + | chr6_3:98752843-98752862 | Msa0968400:intron | 20.0% |
| !! | TTATTCTTCTTTTGGTCATT+GGG | - | chr6_3:98749720-98749739 | None:intergenic | 25.0% |
| !! | CATCAAACTTATTCTTCTTT+TGG | - | chr6_3:98749728-98749747 | None:intergenic | 25.0% |
| ! | CAAAAGAAGAATAAGTTTGA+TGG | + | chr6_3:98749726-98749745 | Msa0968400:CDS | 25.0% |
| !! | TAAACTTTTCTTCTTCTCTA+TGG | - | chr6_3:98749884-98749903 | None:intergenic | 25.0% |
| !!! | TGTAACAAAATTTTTAGGTG+TGG | + | chr6_3:98750000-98750019 | Msa0968400:CDS | 25.0% |
| !!! | AAAATTTTTAGGTGTGGAAA+AGG | + | chr6_3:98750006-98750025 | Msa0968400:CDS | 25.0% |
| !!! | AATAACCAATTCTTTGGAAT+TGG | - | chr6_3:98750283-98750302 | None:intergenic | 25.0% |
| ! | ATCATCAATAACCAATTCTT+TGG | - | chr6_3:98750289-98750308 | None:intergenic | 25.0% |
| !!! | TTGATGATGAATCAAAATCT+TGG | + | chr6_3:98750301-98750320 | Msa0968400:CDS | 25.0% |
| !! | TGATGATGAATCAAAATCTT+GGG | + | chr6_3:98750302-98750321 | Msa0968400:CDS | 25.0% |
| ! | AGAATGACAATAACAAAAGA+AGG | + | chr6_3:98750523-98750542 | Msa0968400:CDS | 25.0% |
| !! | TTATCTTTTGATGTTGAACA+TGG | - | chr6_3:98750573-98750592 | None:intergenic | 25.0% |
| !!! | TTTTTAAAACTCGCAAACAA+GGG | - | chr6_3:98750836-98750855 | None:intergenic | 25.0% |
| !!! | TTTTTTAAAACTCGCAAACA+AGG | - | chr6_3:98750837-98750856 | None:intergenic | 25.0% |
| !!! | TTGCGAGTTTTAAAAAAACA+AGG | + | chr6_3:98750840-98750859 | Msa0968400:intron | 25.0% |
| !!! | TGCGAGTTTTAAAAAAACAA+GGG | + | chr6_3:98750841-98750860 | Msa0968400:intron | 25.0% |
| !!! | GTTTTAAAAAAACAAGGGAA+AGG | + | chr6_3:98750846-98750865 | Msa0968400:intron | 25.0% |
| !!! | TTTTAAAGTTTCCCCAAATT+AGG | + | chr6_3:98750903-98750922 | Msa0968400:intron | 25.0% |
| !! | TTTAAAGTTTCCCCAAATTA+GGG | + | chr6_3:98750904-98750923 | Msa0968400:intron | 25.0% |
| !! | AAGGTTGTAATAAGTTGTTT+TGG | - | chr6_3:98751287-98751306 | None:intergenic | 25.0% |
| !!! | ATAAGTTGGTTTTTGAAAAG+AGG | - | chr6_3:98751519-98751538 | None:intergenic | 25.0% |
| ! | CAAAAGAGATCATAATAAAC+TGG | + | chr6_3:98751826-98751845 | Msa0968400:intron | 25.0% |
| ! | TTATACAAAACAGCTTACTA+CGG | - | chr6_3:98751995-98752014 | None:intergenic | 25.0% |
| ! | GTTAAAAAATCAACAAGGAA+AGG | - | chr6_3:98752221-98752240 | None:intergenic | 25.0% |
| !!! | ATCACACCAATCTTTTATTT+TGG | - | chr6_3:98752740-98752759 | None:intergenic | 25.0% |
| !! | AATTGTCTTTTTCTGTTACA+AGG | - | chr6_3:98752788-98752807 | None:intergenic | 25.0% |
| !!! | TTTTACTGCTATTTTTCGTT+GGG | - | chr6_3:98753003-98753022 | None:intergenic | 25.0% |
| !!! | ATTTTACTGCTATTTTTCGT+TGG | - | chr6_3:98753004-98753023 | None:intergenic | 25.0% |
| !!! | ATCGGTTTTAAATTTGTTCT+TGG | + | chr6_3:98753347-98753366 | Msa0968400:CDS | 25.0% |
| ! | CTTATTCTTCTTTTGGTCAT+TGG | - | chr6_3:98749721-98749740 | None:intergenic | 30.0% |
| AAGAAGAATAAGTTTGATGG+TGG | + | chr6_3:98749729-98749748 | Msa0968400:CDS | 30.0% | |
| GCTAATTGCAATTCTAATGA+TGG | + | chr6_3:98750093-98750112 | Msa0968400:CDS | 30.0% | |
| AAAGAACTTCCAATCCAATA+AGG | + | chr6_3:98750140-98750159 | Msa0968400:CDS | 30.0% | |
| ! | TTGTTTAAAACCGGTAAAAG+AGG | + | chr6_3:98750333-98750352 | Msa0968400:CDS | 30.0% |
| GTTGTCGTGTAAATGTTTAT+CGG | - | chr6_3:98750412-98750431 | None:intergenic | 30.0% | |
| AACTCGCAAAAAAAACCTTA+AGG | - | chr6_3:98750774-98750793 | None:intergenic | 30.0% | |
| !!! | TTAAGGTTTTTTTTGCGAGT+TGG | + | chr6_3:98750773-98750792 | Msa0968400:intron | 30.0% |
| !!! | TAAGGTTTTTTTTGCGAGTT+GGG | + | chr6_3:98750774-98750793 | Msa0968400:intron | 30.0% |
| ! | AAAAAACAAGGGAAAGGTTT+TGG | + | chr6_3:98750852-98750871 | Msa0968400:intron | 30.0% |
| ! | AAAAACAAGGGAAAGGTTTT+GGG | + | chr6_3:98750853-98750872 | Msa0968400:intron | 30.0% |
| TTAAAGTTTCCCCAAATTAG+GGG | + | chr6_3:98750905-98750924 | Msa0968400:intron | 30.0% | |
| ! | AATTCGGTCATGTCTAAAAT+TGG | - | chr6_3:98751007-98751026 | None:intergenic | 30.0% |
| !!! | GTAAGCTGTTTTTTGAAAAG+AGG | - | chr6_3:98751143-98751162 | None:intergenic | 30.0% |
| !! | GTTGTTTTGTACAAATAAGC+TGG | - | chr6_3:98751171-98751190 | None:intergenic | 30.0% |
| !! | ACAAGCTGTTTTGAATAAGT+TGG | - | chr6_3:98751533-98751552 | None:intergenic | 30.0% |
| AATGAAGATCAACTACACTT+AGG | - | chr6_3:98752349-98752368 | None:intergenic | 30.0% | |
| !! | CTTTGAGTGTTATTTAGAAC+AGG | - | chr6_3:98752649-98752668 | None:intergenic | 30.0% |
| TGGAGACCAAAATAAAAGAT+TGG | + | chr6_3:98752731-98752750 | Msa0968400:intron | 30.0% | |
| !! | TAAATTTTGCTATGGCCTAT+GGG | - | chr6_3:98752819-98752838 | None:intergenic | 30.0% |
| AGAATTTACCTAACAAGATG+AGG | - | chr6_3:98752888-98752907 | None:intergenic | 30.0% | |
| ! | ATCACTTTGAGCATTTGTTT+TGG | - | chr6_3:98752974-98752993 | None:intergenic | 30.0% |
| TCATCAAAGCAAATTGAGAA+AGG | + | chr6_3:98753054-98753073 | Msa0968400:intron | 30.0% | |
| GAGTATATTGATGGAAATGT+AGG | + | chr6_3:98753128-98753147 | Msa0968400:intron | 30.0% | |
| ! | TTTGTTATAGCTATGCTCAT+CGG | + | chr6_3:98753329-98753348 | Msa0968400:intron | 30.0% |
| !! | AGAATAAGTTTGATGGTGGT+AGG | + | chr6_3:98749733-98749752 | Msa0968400:CDS | 35.0% |
| ! | CTTCTTCTCTATGGTTTTCA+TGG | - | chr6_3:98749875-98749894 | None:intergenic | 35.0% |
| !! | TCATCTTGATGATGATCCTT+TGG | - | chr6_3:98749943-98749962 | None:intergenic | 35.0% |
| AAGGATCATCATCAAGATGA+AGG | + | chr6_3:98749943-98749962 | Msa0968400:CDS | 35.0% | |
| TTTAGGTGTGGAAAAGGATT+AGG | + | chr6_3:98750012-98750031 | Msa0968400:CDS | 35.0% | |
| !! | CATGTAAAGCCTTATTGGAT+TGG | - | chr6_3:98750152-98750171 | None:intergenic | 35.0% |
| CAATCCAATAAGGCTTTACA+TGG | + | chr6_3:98750150-98750169 | Msa0968400:CDS | 35.0% | |
| TGCATCCAATTCCAAAGAAT+TGG | + | chr6_3:98750275-98750294 | Msa0968400:CDS | 35.0% | |
| ! | GCACGAAGATTGTTTAAAAC+CGG | + | chr6_3:98750324-98750343 | Msa0968400:CDS | 35.0% |
| TTTACACGACAACTTCAATG+AGG | + | chr6_3:98750419-98750438 | Msa0968400:CDS | 35.0% | |
| TTTGGATGATGAGGATAAGA+AGG | + | chr6_3:98750443-98750462 | Msa0968400:CDS | 35.0% | |
| AATGTTGTACCTAGTACTAG+TGG | + | chr6_3:98750468-98750487 | Msa0968400:CDS | 35.0% | |
| TAACAAAAGAAGGAAGAAGC+TGG | + | chr6_3:98750533-98750552 | Msa0968400:CDS | 35.0% | |
| ! | GTTTCTGTCATCATTCCTTT+TGG | + | chr6_3:98750694-98750713 | Msa0968400:intron | 35.0% |
| AATGCAAGTCAAGAGATACA+TGG | - | chr6_3:98750730-98750749 | None:intergenic | 35.0% | |
| AAACCTTAAGGTTGAAGATC+AGG | - | chr6_3:98750762-98750781 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGCGAGTTGGGTTT+TGG | + | chr6_3:98750780-98750799 | Msa0968400:intron | 35.0% |
| ! | AAAACAAGGGAAAGGTTTTG+GGG | + | chr6_3:98750854-98750873 | Msa0968400:intron | 35.0% |
| ! | GAGGTCATAATAAGCTGTTT+TGG | - | chr6_3:98751500-98751519 | None:intergenic | 35.0% |
| AAATCAACAAGGAAAGGAGA+TGG | - | chr6_3:98752215-98752234 | None:intergenic | 35.0% | |
| TGGGCGTTAAAAAATCAACA+AGG | - | chr6_3:98752226-98752245 | None:intergenic | 35.0% | |
| !!! | TGATTTTTTAACGCCCAAAC+AGG | + | chr6_3:98752229-98752248 | Msa0968400:intron | 35.0% |
| !!! | GATTTTTTAACGCCCAAACA+GGG | + | chr6_3:98752230-98752249 | Msa0968400:intron | 35.0% |
| !!! | ATTTTTTAACGCCCAAACAG+GGG | + | chr6_3:98752231-98752250 | Msa0968400:intron | 35.0% |
| !! | AGAAGCACTTCATATTGGTT+AGG | - | chr6_3:98752446-98752465 | None:intergenic | 35.0% |
| !! | ACATCAGAAGCACTTCATAT+TGG | - | chr6_3:98752451-98752470 | None:intergenic | 35.0% |
| TTGAGGAACATGATTGATCA+AGG | - | chr6_3:98752501-98752520 | None:intergenic | 35.0% | |
| TGAGATCATAAGCATCTCAT+GGG | - | chr6_3:98752535-98752554 | None:intergenic | 35.0% | |
| ATGAGATCATAAGCATCTCA+TGG | - | chr6_3:98752536-98752555 | None:intergenic | 35.0% | |
| ACAAAAATTGAGGCAAAGCT+TGG | + | chr6_3:98752711-98752730 | Msa0968400:intron | 35.0% | |
| AAAGATTGGTGTGATGAAAC+TGG | + | chr6_3:98752745-98752764 | Msa0968400:intron | 35.0% | |
| !! | GTAAATTTTGCTATGGCCTA+TGG | - | chr6_3:98752820-98752839 | None:intergenic | 35.0% |
| ! | TCTCTCGGTAAATTTTGCTA+TGG | - | chr6_3:98752827-98752846 | None:intergenic | 35.0% |
| TTGTAGATCCTCATCTTGTT+AGG | + | chr6_3:98752877-98752896 | Msa0968400:intron | 35.0% | |
| AAGCAAATTGAGAAAGGAGA+TGG | + | chr6_3:98753060-98753079 | Msa0968400:intron | 35.0% | |
| !!! | TCTCACTTTTTTGGTGAGAA+GGG | - | chr6_3:98753102-98753121 | None:intergenic | 35.0% |
| AGACAACTGGAGTATATTGA+TGG | + | chr6_3:98753119-98753138 | Msa0968400:intron | 35.0% | |
| AGAATCCATAGTCAAGCTCT+AGG | + | chr6_3:98750045-98750064 | Msa0968400:CDS | 40.0% | |
| GAATCCATAGTCAAGCTCTA+GGG | + | chr6_3:98750046-98750065 | Msa0968400:CDS | 40.0% | |
| ! | GTGACCATGTAAAGCCTTAT+TGG | - | chr6_3:98750157-98750176 | None:intergenic | 40.0% |
| CGACAACTTCAATGAGGATT+TGG | + | chr6_3:98750425-98750444 | Msa0968400:CDS | 40.0% | |
| CAATGAGGATTTGGATGATG+AGG | + | chr6_3:98750434-98750453 | Msa0968400:CDS | 40.0% | |
| ! | CATGGCATTGAAACTCCAAA+AGG | - | chr6_3:98750712-98750731 | None:intergenic | 40.0% |
| CTACCTGATCTTCAACCTTA+AGG | + | chr6_3:98750756-98750775 | Msa0968400:intron | 40.0% | |
| !! | AAACAAGGGAAAGGTTTTGG+GGG | + | chr6_3:98750855-98750874 | Msa0968400:intron | 40.0% |
| ! | GAGGCCGTAATAAGTTGTTT+TGG | - | chr6_3:98751124-98751143 | None:intergenic | 40.0% |
| !!! | TTTTTTAACGCCCAAACAGG+GGG | + | chr6_3:98752232-98752251 | Msa0968400:intron | 40.0% |
| !!! | CTTTGTTTGCGAGTTTTGAG+GGG | - | chr6_3:98752326-98752345 | None:intergenic | 40.0% |
| !!! | GCTTTGTTTGCGAGTTTTGA+GGG | - | chr6_3:98752327-98752346 | None:intergenic | 40.0% |
| CATGGGCACTACAAAAATTG+AGG | - | chr6_3:98752518-98752537 | None:intergenic | 40.0% | |
| !!! | GACAATTTTTGGTTGCCCAT+AGG | + | chr6_3:98752801-98752820 | Msa0968400:intron | 40.0% |
| !!! | CTCACTTTTTTGGTGAGAAG+GGG | - | chr6_3:98753101-98753120 | None:intergenic | 40.0% |
| !!! | GTCTCACTTTTTTGGTGAGA+AGG | - | chr6_3:98753103-98753122 | None:intergenic | 40.0% |
| CACCAAAAAAGTGAGACAAC+TGG | + | chr6_3:98753106-98753125 | Msa0968400:intron | 40.0% | |
| !!! | CTCCAGTTGTCTCACTTTTT+TGG | - | chr6_3:98753111-98753130 | None:intergenic | 40.0% |
| !! | TGATGGTGGTAGGATACATC+AGG | + | chr6_3:98749743-98749762 | Msa0968400:CDS | 45.0% |
| AGGTGTGGAAAAGGATTAGG+TGG | + | chr6_3:98750015-98750034 | Msa0968400:CDS | 45.0% | |
| CTTTCCCTAGAGCTTGACTA+TGG | - | chr6_3:98750053-98750072 | None:intergenic | 45.0% | |
| !! | TAGTCAAGCTCTAGGGAAAG+AGG | + | chr6_3:98750053-98750072 | Msa0968400:CDS | 45.0% |
| !! | AGTCAAGCTCTAGGGAAAGA+GGG | + | chr6_3:98750054-98750073 | Msa0968400:CDS | 45.0% |
| ACATGAGATCTCACCCTGAA+AGG | + | chr6_3:98750175-98750194 | Msa0968400:CDS | 45.0% | |
| CATGAGATCTCACCCTGAAA+GGG | + | chr6_3:98750176-98750195 | Msa0968400:CDS | 45.0% | |
| ! | GAGGGGTATGAACCCTAATA+AGG | + | chr6_3:98750203-98750222 | Msa0968400:CDS | 45.0% |
| ! | ACTCGAACGACCTCTTTTAC+CGG | - | chr6_3:98750346-98750365 | None:intergenic | 45.0% |
| CCAACAAGACCACTAGTACT+AGG | - | chr6_3:98750480-98750499 | None:intergenic | 45.0% | |
| !! | CCTAGTACTAGTGGTCTTGT+TGG | + | chr6_3:98750477-98750496 | Msa0968400:CDS | 45.0% |
| !! | TTTTGCGAGTTGGGTTTTGG+AGG | + | chr6_3:98750783-98750802 | Msa0968400:intron | 45.0% |
| !!! | TTTGCGAGTTGGGTTTTGGA+GGG | + | chr6_3:98750784-98750803 | Msa0968400:intron | 45.0% |
| !!! | AACAAGGGAAAGGTTTTGGG+GGG | + | chr6_3:98750856-98750875 | Msa0968400:intron | 45.0% |
| !!! | AAGGTTTTGGGGGGTTTTGA+AGG | + | chr6_3:98750865-98750884 | Msa0968400:intron | 45.0% |
| !!! | AGGTTTTGGGGGGTTTTGAA+GGG | + | chr6_3:98750866-98750885 | Msa0968400:intron | 45.0% |
| AAGTTTCCCCAAATTAGGGG+AGG | + | chr6_3:98750908-98750927 | Msa0968400:intron | 45.0% | |
| AGTTTCCCCAAATTAGGGGA+GGG | + | chr6_3:98750909-98750928 | Msa0968400:intron | 45.0% | |
| CAACAAGGAAAGGAGATGGA+GGG | - | chr6_3:98752211-98752230 | None:intergenic | 45.0% | |
| TCAACAAGGAAAGGAGATGG+AGG | - | chr6_3:98752212-98752231 | None:intergenic | 45.0% | |
| GGAAAACTTTCCCCCTGTTT+GGG | - | chr6_3:98752245-98752264 | None:intergenic | 45.0% | |
| AGGAAAGGAAAGGCTAAGGA+GGG | - | chr6_3:98752302-98752321 | None:intergenic | 45.0% | |
| AAGGAAAGGAAAGGCTAAGG+AGG | - | chr6_3:98752303-98752322 | None:intergenic | 45.0% | |
| TTTGAGGGGAAGGAAAGGAA+AGG | - | chr6_3:98752312-98752331 | None:intergenic | 45.0% | |
| !!! | GGCTTTGTTTGCGAGTTTTG+AGG | - | chr6_3:98752328-98752347 | None:intergenic | 45.0% |
| !! | AAAGAATATTAAATATAAAA+AGG | - | chr6_3:98749784-98749803 | None:intergenic | 5.0% |
| AGAGGGTGAGTCGAAAGCAA+AGG | + | chr6_3:98750071-98750090 | Msa0968400:CDS | 50.0% | |
| GATCTCACCCTGAAAGGGAA+TGG | + | chr6_3:98750181-98750200 | Msa0968400:CDS | 50.0% | |
| TCACCCTGAAAGGGAATGGA+GGG | + | chr6_3:98750185-98750204 | Msa0968400:CDS | 50.0% | |
| TACCCCTCCATTCCCTTTCA+GGG | - | chr6_3:98750191-98750210 | None:intergenic | 50.0% | |
| ATACCCCTCCATTCCCTTTC+AGG | - | chr6_3:98750192-98750211 | None:intergenic | 50.0% | |
| GGTAAAAGAGGTCGTTCGAG+TGG | + | chr6_3:98750345-98750364 | Msa0968400:CDS | 50.0% | |
| !!! | TTGCGAGTTGGGTTTTGGAG+GGG | + | chr6_3:98750785-98750804 | Msa0968400:intron | 50.0% |
| GGAAGGAAAGGCTTATGGAG+AGG | + | chr6_3:98750806-98750825 | Msa0968400:intron | 50.0% | |
| GTTTCCCCAAATTAGGGGAG+GGG | + | chr6_3:98750910-98750929 | Msa0968400:intron | 50.0% | |
| TTTCCCCAAATTAGGGGAGG+GGG | + | chr6_3:98750911-98750930 | Msa0968400:intron | 50.0% | |
| GGGAAAACTTTCCCCCTGTT+TGG | - | chr6_3:98752246-98752265 | None:intergenic | 50.0% | |
| GGAAAGGAAAGGCTAAGGAG+GGG | - | chr6_3:98752301-98752320 | None:intergenic | 50.0% | |
| GGGAAGGAAAGGAAAGGCTA+AGG | - | chr6_3:98752306-98752325 | None:intergenic | 50.0% | |
| !!! | CGAGTTTTGAGGGGAAGGAA+AGG | - | chr6_3:98752317-98752336 | None:intergenic | 50.0% |
| !!! | GTTTGCGAGTTTTGAGGGGA+AGG | - | chr6_3:98752322-98752341 | None:intergenic | 50.0% |
| CTCACCCTGAAAGGGAATGG+AGG | + | chr6_3:98750184-98750203 | Msa0968400:CDS | 55.0% | |
| CACCCTGAAAGGGAATGGAG+GGG | + | chr6_3:98750186-98750205 | Msa0968400:CDS | 55.0% | |
| !!! | GAGTTGGGTTTTGGAGGGGA+AGG | + | chr6_3:98750789-98750808 | Msa0968400:intron | 55.0% |
| !!! | GGGTTTTGGAGGGGAAGGAA+AGG | + | chr6_3:98750794-98750813 | Msa0968400:intron | 55.0% |
| GGAGGGGAAGGAAAGGCTTA+TGG | + | chr6_3:98750801-98750820 | Msa0968400:intron | 55.0% | |
| TTCCCCAAATTAGGGGAGGG+GGG | + | chr6_3:98750912-98750931 | Msa0968400:intron | 55.0% | |
| AACCCCCCCTCCCCTAATTT+GGG | - | chr6_3:98750918-98750937 | None:intergenic | 55.0% | |
| AAACCCCCCCTCCCCTAATT+TGG | - | chr6_3:98750919-98750938 | None:intergenic | 55.0% | |
| !!! | AGGGGAGGGGGGGTTTTTTT+TGG | + | chr6_3:98750923-98750942 | Msa0968400:intron | 55.0% |
| !!! | GGGGAGGGGGGGTTTTTTTT+GGG | + | chr6_3:98750924-98750943 | Msa0968400:intron | 55.0% |
| !!! | GGGAGGGGGGGTTTTTTTTG+GGG | + | chr6_3:98750925-98750944 | Msa0968400:intron | 55.0% |
| !!! | GGAGGGGGGGTTTTTTTTGG+GGG | + | chr6_3:98750926-98750945 | Msa0968400:intron | 55.0% |
| !!! | GAGGGGGGGTTTTTTTTGGG+GGG | + | chr6_3:98750927-98750946 | Msa0968400:intron | 55.0% |
| !!! | AGGGGGGGTTTTTTTTGGGG+GGG | + | chr6_3:98750928-98750947 | Msa0968400:intron | 55.0% |
| GAAAGGGAGGGAAGGGAGAA+AGG | - | chr6_3:98752270-98752289 | None:intergenic | 55.0% | |
| AGGGAAGGAAAGGGAGGGAA+GGG | - | chr6_3:98752277-98752296 | None:intergenic | 55.0% | |
| AAGGGAAGGAAAGGGAGGGA+AGG | - | chr6_3:98752278-98752297 | None:intergenic | 55.0% | |
| AGGAGGGGAAGGGAAGGAAA+GGG | - | chr6_3:98752286-98752305 | None:intergenic | 55.0% | |
| AAGGAGGGGAAGGGAAGGAA+AGG | - | chr6_3:98752287-98752306 | None:intergenic | 55.0% | |
| GGAAAGGCTAAGGAGGGGAA+GGG | - | chr6_3:98752296-98752315 | None:intergenic | 55.0% | |
| AGGAAAGGCTAAGGAGGGGA+AGG | - | chr6_3:98752297-98752316 | None:intergenic | 55.0% | |
| TCCCCAAATTAGGGGAGGGG+GGG | + | chr6_3:98750913-98750932 | Msa0968400:intron | 60.0% | |
| ACCCCCCCTCCCCTAATTTG+GGG | - | chr6_3:98750917-98750936 | None:intergenic | 60.0% | |
| !!! | GGGGGGGTTTTTTTTGGGGG+GGG | + | chr6_3:98750929-98750948 | Msa0968400:intron | 60.0% |
| !!! | GGGGGGTTTTTTTTGGGGGG+GGG | + | chr6_3:98750930-98750949 | Msa0968400:intron | 60.0% |
| !!! | GGGGGTTTTTTTTGGGGGGG+GGG | + | chr6_3:98750931-98750950 | Msa0968400:intron | 60.0% |
| !!! | GGGGTTTTTTTTGGGGGGGG+GGG | + | chr6_3:98750932-98750951 | Msa0968400:intron | 60.0% |
| !!! | GGGTTTTTTTTGGGGGGGGG+GGG | + | chr6_3:98750933-98750952 | Msa0968400:intron | 60.0% |
| !!! | GGTTTTTTTTGGGGGGGGGG+GGG | + | chr6_3:98750934-98750953 | Msa0968400:intron | 60.0% |
| !!! | GTTTTTTTTGGGGGGGGGGG+GGG | + | chr6_3:98750935-98750954 | Msa0968400:intron | 60.0% |
| !!! | TTTTTTTTGGGGGGGGGGGG+GGG | + | chr6_3:98750936-98750955 | Msa0968400:intron | 60.0% |
| GGGAGGGAAGGGAGAAAGGA+GGG | - | chr6_3:98752266-98752285 | None:intergenic | 60.0% | |
| AGGGAGGGAAGGGAGAAAGG+AGG | - | chr6_3:98752267-98752286 | None:intergenic | 60.0% | |
| GGGGAAGGGAAGGAAAGGGA+GGG | - | chr6_3:98752282-98752301 | None:intergenic | 60.0% | |
| AGGGGAAGGGAAGGAAAGGG+AGG | - | chr6_3:98752283-98752302 | None:intergenic | 60.0% | |
| AGGCTAAGGAGGGGAAGGGA+AGG | - | chr6_3:98752292-98752311 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 98749711 | 98753395 | 98749711 | ID=Msa0968400;Name=Msa0968400 |
| chr6_3 | mRNA | 98749711 | 98753395 | 98749711 | ID=Msa0968400-mRNA-1;Parent=Msa0968400;Name=Msa0968400-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|0.66|1|1|3|0|269 |
| chr6_3 | exon | 98749711 | 98749764 | 98749711 | ID=Msa0968400-mRNA-1:exon:18573;Parent=Msa0968400-mRNA-1 |
| chr6_3 | exon | 98749856 | 98750554 | 98749856 | ID=Msa0968400-mRNA-1:exon:18574;Parent=Msa0968400-mRNA-1 |
| chr6_3 | exon | 98753339 | 98753395 | 98753339 | ID=Msa0968400-mRNA-1:exon:18575;Parent=Msa0968400-mRNA-1 |
| chr6_3 | CDS | 98749711 | 98749764 | 98749711 | ID=Msa0968400-mRNA-1:cds;Parent=Msa0968400-mRNA-1 |
| chr6_3 | CDS | 98749856 | 98750554 | 98749856 | ID=Msa0968400-mRNA-1:cds;Parent=Msa0968400-mRNA-1 |
| chr6_3 | CDS | 98753339 | 98753395 | 98753339 | ID=Msa0968400-mRNA-1:cds;Parent=Msa0968400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
