Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969310 | KEH24770.1 | 88.889 | 144 | 13 | 1 | 37 | 177 | 1 | 144 | 2.54e-70 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969310 | sp|Q9STS6|LBD27_ARATH | 55.769 | 104 | 45 | 1 | 9 | 112 | 36 | 138 | 3.28e-33 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969310 | A0A072UG64 | 88.889 | 144 | 13 | 1 | 37 | 177 | 1 | 144 | 1.21e-70 | 222 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0969310 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969310 | MtrunA17_Chr6g0449311 | 88.889 | 144 | 13 | 1 | 37 | 177 | 1 | 144 | 2.34e-74 | 222 |
| Msa0969310 | MtrunA17_Chr5g0439111 | 63.924 | 158 | 45 | 4 | 1 | 153 | 1 | 151 | 5.20e-59 | 186 |
| Msa0969310 | MtrunA17_Chr6g0452661 | 47.034 | 236 | 71 | 7 | 1 | 233 | 1 | 185 | 1.98e-56 | 180 |
| Msa0969310 | MtrunA17_Chr4g0055441 | 61.871 | 139 | 39 | 3 | 10 | 145 | 3 | 130 | 3.79e-52 | 166 |
| Msa0969310 | MtrunA17_Chr6g0452691 | 55.405 | 148 | 53 | 3 | 1 | 142 | 1 | 141 | 6.04e-51 | 164 |
| Msa0969310 | MtrunA17_Chr6g0452671 | 54.930 | 142 | 57 | 3 | 1 | 140 | 1 | 137 | 2.09e-45 | 150 |
| Msa0969310 | MtrunA17_Chr4g0059901 | 50.943 | 106 | 51 | 1 | 8 | 113 | 9 | 113 | 1.09e-30 | 114 |
| Msa0969310 | MtrunA17_Chr8g0342351 | 52.381 | 105 | 49 | 1 | 8 | 112 | 11 | 114 | 3.23e-29 | 110 |
| Msa0969310 | MtrunA17_Chr4g0058651 | 38.806 | 134 | 70 | 2 | 7 | 140 | 9 | 130 | 9.73e-26 | 99.8 |
| Msa0969310 | MtrunA17_Chr3g0097221 | 45.714 | 105 | 56 | 1 | 7 | 111 | 5 | 108 | 1.69e-25 | 101 |
| Msa0969310 | MtrunA17_Chr7g0227511 | 44.898 | 98 | 53 | 1 | 7 | 104 | 9 | 105 | 5.66e-25 | 97.1 |
| Msa0969310 | MtrunA17_Chr2g0330201 | 45.283 | 106 | 57 | 1 | 8 | 113 | 18 | 122 | 4.42e-24 | 97.8 |
| Msa0969310 | MtrunA17_Chr5g0402611 | 42.857 | 105 | 59 | 1 | 7 | 111 | 6 | 109 | 6.01e-24 | 97.8 |
| Msa0969310 | MtrunA17_Chr8g0353981 | 48.193 | 83 | 42 | 1 | 7 | 89 | 5 | 86 | 8.98e-24 | 95.5 |
| Msa0969310 | MtrunA17_Chr3g0115431 | 43.137 | 102 | 57 | 1 | 10 | 111 | 10 | 110 | 1.08e-23 | 95.1 |
| Msa0969310 | MtrunA17_Chr3g0117121 | 43.878 | 98 | 54 | 1 | 7 | 104 | 8 | 104 | 2.90e-23 | 93.2 |
| Msa0969310 | MtrunA17_Chr4g0043421 | 38.168 | 131 | 79 | 2 | 10 | 140 | 16 | 144 | 5.47e-23 | 92.0 |
| Msa0969310 | MtrunA17_Chr6g0449641 | 41.837 | 98 | 56 | 1 | 7 | 104 | 7 | 103 | 4.82e-22 | 88.6 |
| Msa0969310 | MtrunA17_Chr5g0437571 | 37.931 | 116 | 70 | 2 | 7 | 122 | 4 | 117 | 7.68e-22 | 88.6 |
| Msa0969310 | MtrunA17_Chr2g0311601 | 39.796 | 98 | 58 | 1 | 10 | 107 | 14 | 110 | 2.67e-21 | 87.0 |
| Msa0969310 | MtrunA17_Chr5g0444351 | 30.556 | 144 | 96 | 2 | 10 | 153 | 6 | 145 | 4.56e-21 | 86.3 |
| Msa0969310 | MtrunA17_Chr6g0449651 | 40.816 | 98 | 57 | 1 | 7 | 104 | 65 | 161 | 5.36e-21 | 87.4 |
| Msa0969310 | MtrunA17_Chr5g0437401 | 35.780 | 109 | 69 | 1 | 5 | 113 | 7 | 114 | 1.10e-20 | 85.9 |
| Msa0969310 | MtrunA17_Chr3g0106101 | 36.937 | 111 | 68 | 2 | 10 | 120 | 8 | 116 | 1.76e-20 | 85.5 |
| Msa0969310 | MtrunA17_Chr4g0030001 | 39.655 | 116 | 67 | 3 | 10 | 124 | 25 | 138 | 1.88e-20 | 85.9 |
| Msa0969310 | MtrunA17_Chr5g0438091 | 31.618 | 136 | 86 | 2 | 10 | 139 | 40 | 174 | 3.60e-20 | 85.1 |
| Msa0969310 | MtrunA17_Chr7g0225111 | 36.364 | 110 | 69 | 1 | 10 | 119 | 6 | 114 | 5.20e-20 | 82.4 |
| Msa0969310 | MtrunA17_Chr8g0374591 | 38.462 | 104 | 63 | 1 | 8 | 111 | 7 | 109 | 7.31e-20 | 82.4 |
| Msa0969310 | MtrunA17_Chr1g0200201 | 37.500 | 128 | 70 | 3 | 10 | 129 | 73 | 198 | 2.48e-19 | 83.6 |
| Msa0969310 | MtrunA17_Chr8g0374601 | 39.423 | 104 | 62 | 1 | 8 | 111 | 25 | 127 | 2.66e-19 | 84.7 |
| Msa0969310 | MtrunA17_Chr4g0040831 | 32.558 | 129 | 78 | 3 | 8 | 132 | 14 | 137 | 3.69e-19 | 82.4 |
| Msa0969310 | MtrunA17_Chr3g0114061 | 39.048 | 105 | 62 | 2 | 10 | 114 | 9 | 111 | 5.67e-19 | 80.9 |
| Msa0969310 | MtrunA17_Chr3g0113891 | 37.500 | 104 | 64 | 1 | 5 | 108 | 10 | 112 | 1.24e-18 | 80.9 |
| Msa0969310 | MtrunA17_Chr3g0129071 | 36.735 | 98 | 61 | 1 | 10 | 107 | 48 | 144 | 3.32e-18 | 80.9 |
| Msa0969310 | MtrunA17_Chr5g0432451 | 31.429 | 140 | 84 | 2 | 10 | 149 | 44 | 171 | 6.69e-18 | 79.7 |
| Msa0969310 | MtrunA17_Chr7g0260971 | 38.835 | 103 | 61 | 2 | 10 | 111 | 15 | 116 | 1.67e-16 | 75.9 |
| Msa0969310 | MtrunA17_Chr8g0351721 | 35.185 | 108 | 68 | 2 | 5 | 111 | 14 | 120 | 7.27e-15 | 71.2 |
| Msa0969310 | MtrunA17_Chr1g0184281 | 34.783 | 115 | 71 | 3 | 10 | 121 | 16 | 129 | 2.09e-14 | 69.7 |
| Msa0969310 | MtrunA17_Chr7g0245871 | 35.354 | 99 | 62 | 2 | 10 | 107 | 28 | 125 | 2.90e-14 | 70.1 |
| Msa0969310 | MtrunA17_Chr8g0351701 | 33.981 | 103 | 66 | 2 | 10 | 111 | 24 | 125 | 5.32e-14 | 69.3 |
| Msa0969310 | MtrunA17_Chr4g0046201 | 37.500 | 88 | 54 | 1 | 9 | 96 | 6 | 92 | 6.77e-14 | 69.3 |
| Msa0969310 | MtrunA17_Chr6g0460951 | 33.333 | 102 | 66 | 2 | 10 | 110 | 41 | 141 | 1.38e-13 | 67.8 |
| Msa0969310 | MtrunA17_Chr8g0374581 | 34.615 | 104 | 66 | 2 | 8 | 110 | 7 | 109 | 1.04e-12 | 65.5 |
| Msa0969310 | MtrunA17_Chr1g0184271 | 33.000 | 100 | 65 | 2 | 10 | 108 | 13 | 111 | 1.24e-12 | 65.5 |
| Msa0969310 | MtrunA17_Chr6g0460941 | 35.227 | 88 | 55 | 2 | 10 | 96 | 8 | 94 | 2.07e-12 | 61.6 |
| Msa0969310 | MtrunA17_Chr5g0435641 | 28.302 | 106 | 74 | 2 | 7 | 111 | 5 | 109 | 5.96e-12 | 62.8 |
| Msa0969310 | MtrunA17_Chr2g0326041 | 50.000 | 48 | 24 | 0 | 10 | 57 | 34 | 81 | 3.34e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0969310 | AT3G47870.1 | 55.769 | 104 | 45 | 1 | 9 | 112 | 36 | 138 | 3.33e-34 | 125 |
| Msa0969310 | AT3G13850.1 | 43.243 | 148 | 79 | 3 | 8 | 152 | 35 | 180 | 1.92e-29 | 111 |
| Msa0969310 | AT3G27650.1 | 42.424 | 99 | 56 | 1 | 7 | 105 | 37 | 134 | 3.13e-23 | 92.4 |
| Msa0969310 | AT5G63090.4 | 43.878 | 98 | 54 | 1 | 7 | 104 | 9 | 105 | 7.12e-23 | 92.4 |
| Msa0969310 | AT5G63090.3 | 43.878 | 98 | 54 | 1 | 7 | 104 | 9 | 105 | 7.12e-23 | 92.4 |
| Msa0969310 | AT5G63090.2 | 43.878 | 98 | 54 | 1 | 7 | 104 | 9 | 105 | 7.12e-23 | 92.4 |
| Msa0969310 | AT5G63090.1 | 43.878 | 98 | 54 | 1 | 7 | 104 | 9 | 105 | 7.12e-23 | 92.4 |
| Msa0969310 | AT1G65620.1 | 46.988 | 83 | 43 | 1 | 7 | 89 | 7 | 88 | 2.30e-22 | 91.3 |
| Msa0969310 | AT1G65620.4 | 46.988 | 83 | 43 | 1 | 7 | 89 | 7 | 88 | 2.30e-22 | 91.3 |
| Msa0969310 | AT1G65620.3 | 46.988 | 83 | 43 | 1 | 7 | 89 | 7 | 88 | 2.30e-22 | 91.3 |
| Msa0969310 | AT1G65620.5 | 46.988 | 83 | 43 | 1 | 7 | 89 | 7 | 88 | 2.30e-22 | 91.3 |
| Msa0969310 | AT1G65620.2 | 46.988 | 83 | 43 | 1 | 7 | 89 | 7 | 88 | 2.30e-22 | 91.3 |
| Msa0969310 | AT5G66870.1 | 41.176 | 102 | 59 | 1 | 10 | 111 | 8 | 108 | 9.18e-22 | 92.0 |
| Msa0969310 | AT3G26660.1 | 38.261 | 115 | 68 | 2 | 8 | 120 | 4 | 117 | 1.30e-21 | 87.0 |
| Msa0969310 | AT1G31320.1 | 45.263 | 95 | 48 | 2 | 5 | 96 | 6 | 99 | 2.95e-21 | 87.8 |
| Msa0969310 | AT3G26620.1 | 37.143 | 105 | 65 | 1 | 8 | 112 | 4 | 107 | 1.37e-20 | 84.3 |
| Msa0969310 | AT1G07900.1 | 39.130 | 115 | 68 | 2 | 10 | 124 | 34 | 146 | 2.10e-20 | 85.9 |
| Msa0969310 | AT1G72980.1 | 41.071 | 112 | 64 | 2 | 9 | 119 | 13 | 123 | 3.83e-20 | 85.9 |
| Msa0969310 | AT2G30130.1 | 38.596 | 114 | 68 | 2 | 10 | 123 | 9 | 120 | 3.37e-19 | 82.8 |
| Msa0969310 | AT2G28500.1 | 37.391 | 115 | 70 | 2 | 10 | 124 | 56 | 168 | 1.07e-18 | 82.4 |
| Msa0969310 | AT2G30340.2 | 38.776 | 98 | 59 | 1 | 10 | 107 | 54 | 150 | 1.95e-18 | 82.4 |
| Msa0969310 | AT2G30340.1 | 38.776 | 98 | 59 | 1 | 10 | 107 | 53 | 149 | 2.13e-18 | 82.0 |
| Msa0969310 | AT2G23660.2 | 40.594 | 101 | 59 | 1 | 10 | 110 | 6 | 105 | 7.74e-18 | 81.3 |
| Msa0969310 | AT2G23660.3 | 40.594 | 101 | 59 | 1 | 10 | 110 | 6 | 105 | 7.74e-18 | 81.3 |
| Msa0969310 | AT2G23660.1 | 40.594 | 101 | 59 | 1 | 10 | 110 | 6 | 105 | 7.74e-18 | 81.3 |
| Msa0969310 | AT2G40470.2 | 37.755 | 98 | 60 | 1 | 10 | 107 | 21 | 117 | 8.25e-18 | 79.3 |
| Msa0969310 | AT3G11090.1 | 35.354 | 99 | 63 | 1 | 5 | 103 | 7 | 104 | 8.54e-18 | 78.2 |
| Msa0969310 | AT1G16530.1 | 36.283 | 113 | 63 | 3 | 5 | 109 | 10 | 121 | 1.63e-17 | 77.8 |
| Msa0969310 | AT2G40470.1 | 37.755 | 98 | 60 | 1 | 10 | 107 | 46 | 142 | 2.34e-17 | 78.6 |
| Msa0969310 | AT5G15060.1 | 45.946 | 74 | 39 | 1 | 10 | 82 | 18 | 91 | 4.30e-17 | 75.9 |
| Msa0969310 | AT3G50510.1 | 36.449 | 107 | 66 | 2 | 10 | 115 | 13 | 118 | 1.17e-15 | 73.6 |
| Msa0969310 | AT3G50510.2 | 36.449 | 107 | 66 | 2 | 10 | 115 | 13 | 118 | 1.17e-15 | 73.6 |
| Msa0969310 | AT1G06280.1 | 38.298 | 94 | 53 | 3 | 8 | 101 | 23 | 111 | 1.43e-15 | 73.2 |
| Msa0969310 | AT2G19820.1 | 34.343 | 99 | 62 | 1 | 1 | 96 | 1 | 99 | 2.85e-15 | 70.5 |
| Msa0969310 | AT2G42430.1 | 28.966 | 145 | 101 | 2 | 10 | 153 | 16 | 159 | 8.43e-15 | 72.0 |
| Msa0969310 | AT4G00210.1 | 33.333 | 138 | 84 | 4 | 10 | 145 | 12 | 143 | 1.74e-14 | 70.5 |
| Msa0969310 | AT3G58190.1 | 33.645 | 107 | 69 | 2 | 10 | 115 | 12 | 117 | 1.05e-13 | 68.6 |
| Msa0969310 | AT2G42440.1 | 31.481 | 108 | 72 | 2 | 10 | 116 | 8 | 114 | 1.18e-13 | 68.9 |
| Msa0969310 | AT4G00220.1 | 34.653 | 101 | 64 | 2 | 12 | 111 | 20 | 119 | 1.98e-13 | 67.8 |
| Msa0969310 | AT2G45420.1 | 33.663 | 101 | 65 | 2 | 12 | 111 | 40 | 139 | 9.41e-13 | 66.6 |
| Msa0969310 | AT3G03760.1 | 34.314 | 102 | 65 | 2 | 10 | 110 | 52 | 152 | 2.18e-12 | 65.5 |
| Msa0969310 | AT5G35900.1 | 28.431 | 102 | 72 | 1 | 10 | 111 | 6 | 106 | 7.92e-12 | 63.2 |
| Msa0969310 | AT2G45410.1 | 35.644 | 101 | 63 | 2 | 12 | 111 | 19 | 118 | 2.13e-11 | 61.6 |
| Msa0969310 | AT2G31310.1 | 28.689 | 122 | 77 | 3 | 10 | 122 | 8 | 128 | 2.14e-11 | 61.6 |
Find 27 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCAACATTGCTAGATAT+TGG | 0.233878 | 6_4:-811327 | Msa0969300:intron |
| TCACCAACATTGTTAAATAT+TGG | 0.234385 | 6_4:-811136 | Msa0969300:intron |
| CTTTCTTCTTTGATATTTGC+AGG | 0.243555 | 6_4:-810753 | Msa0969300:intron |
| ATTATTATGTGATAATAATA+AGG | 0.272056 | 6_4:-811163 | Msa0969300:intron |
| TGGATGTCTTGGTCTTATTA+TGG | 0.281895 | 6_4:+810967 | Msa0969310:CDS |
| GGTTTATCGGCTGGAAAATA+AGG | 0.296290 | 6_4:-810800 | Msa0969300:intron |
| ATAATGAATACTCAAGTTCT+TGG | 0.299220 | 6_4:+811181 | Msa0969310:CDS |
| GCCAATGCTCATCGTTTGTT+TGG | 0.347008 | 6_4:+810833 | Msa0969310:CDS |
| TAAGGAGCTAAAGGGAAATC+TGG | 0.373984 | 6_4:-810782 | Msa0969300:intron |
| ATTCCAATATTTAACAATGT+TGG | 0.448330 | 6_4:+811133 | Msa0969310:CDS |
| TCTTCTACATTTCTCTTCAT+CGG | 0.464845 | 6_4:+811078 | Msa0969310:CDS |
| GGAATTGAAGAACTAGTAGA+AGG | 0.471090 | 6_4:-811115 | Msa0969300:intron |
| TTCCCAAGTCATGGATGTCT+TGG | 0.482571 | 6_4:+810956 | Msa0969310:CDS |
| GCTGGAAAATAAGGAGCTAA+AGG | 0.488184 | 6_4:-810791 | Msa0969300:intron |
| CTGGAAAATAAGGAGCTAAA+GGG | 0.491954 | 6_4:-810790 | Msa0969300:intron |
| GAATGATCCATTGAAAAGTA+AGG | 0.496518 | 6_4:-811277 | Msa0969300:intron |
| AATCCAATATCTAGCAATGT+TGG | 0.505027 | 6_4:+811324 | Msa0969310:CDS |
| ATGGATACAACAAGGGTACA+TGG | 0.514070 | 6_4:+811409 | Msa0969310:CDS |
| AGACCAAGACATCCATGACT+TGG | 0.541471 | 6_4:-810959 | Msa0969300:intron |
| ACCAAACAAACGATGAGCAT+TGG | 0.553402 | 6_4:-810834 | Msa0969300:intron |
| CGTGCAAGATTCCCAAGTCA+TGG | 0.565788 | 6_4:+810947 | Msa0969310:CDS |
| TACATGGTTGCACAACTGAT+TGG | 0.568443 | 6_4:+811425 | Msa0969310:CDS |
| GTAAATTTGTTAACATCGTG+AGG | 0.570877 | 6_4:-811358 | Msa0969300:intron |
| GACCAAGACATCCATGACTT+GGG | 0.599785 | 6_4:-810958 | Msa0969300:intron |
| ATATTGGATTTGAGAACTAG+TGG | 0.602290 | 6_4:-811311 | Msa0969300:intron |
| TTTGTTTGGTATTTCCAACA+TGG | 0.612102 | 6_4:+810847 | Msa0969310:CDS |
| TGGATTTGAGAACTAGTGGT+AGG | 0.612330 | 6_4:-811307 | Msa0969300:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATGTGATAATAATA+AGG | - | chr6_4:811166-811185 | Msa0969300:intron | 10.0% |
| !!! | AAATTCGAATATAAATTTTA+TGG | + | chr6_4:811390-811409 | Msa0969310:CDS | 10.0% |
| !! | ATTCCAATATTTAACAATGT+TGG | + | chr6_4:811133-811152 | Msa0969310:CDS | 20.0% |
| !!! | TAAATTTTATGGATACAACA+AGG | + | chr6_4:811401-811420 | Msa0969310:CDS | 20.0% |
| !!! | AAATTTTATGGATACAACAA+GGG | + | chr6_4:811402-811421 | Msa0969310:CDS | 20.0% |
| !!! | GAAGTCAATTATTTTTGAGT+CGG | + | chr6_4:810919-810938 | Msa0969310:CDS | 25.0% |
| ! | TCACCAACATTGTTAAATAT+TGG | - | chr6_4:811139-811158 | Msa0969300:intron | 25.0% |
| ! | ATAATGAATACTCAAGTTCT+TGG | + | chr6_4:811181-811200 | Msa0969310:CDS | 25.0% |
| !!! | TTTTCTACCTTACTTTTCAA+TGG | + | chr6_4:811270-811289 | Msa0969310:CDS | 25.0% |
| GGATATTCACAGAAAAAACA+AGG | + | chr6_4:810721-810740 | Msa0969310:CDS | 30.0% | |
| CTTTCTTCTTTGATATTTGC+AGG | - | chr6_4:810756-810775 | Msa0969300:intron | 30.0% | |
| TTTGTTTGGTATTTCCAACA+TGG | + | chr6_4:810847-810866 | Msa0969310:CDS | 30.0% | |
| TCTTCTACATTTCTCTTCAT+CGG | + | chr6_4:811078-811097 | Msa0969310:CDS | 30.0% | |
| GAATGATCCATTGAAAAGTA+AGG | - | chr6_4:811280-811299 | Msa0969300:intron | 30.0% | |
| ATATTGGATTTGAGAACTAG+TGG | - | chr6_4:811314-811333 | Msa0969300:intron | 30.0% | |
| AATCCAATATCTAGCAATGT+TGG | + | chr6_4:811324-811343 | Msa0969310:CDS | 30.0% | |
| TTACCAACATTGCTAGATAT+TGG | - | chr6_4:811330-811349 | Msa0969300:intron | 30.0% | |
| !! | GTAAATTTGTTAACATCGTG+AGG | - | chr6_4:811361-811380 | Msa0969300:intron | 30.0% |
| CTGGAAAATAAGGAGCTAAA+GGG | - | chr6_4:810793-810812 | Msa0969300:intron | 35.0% | |
| ! | TTTTAGCATCTTCACCATGT+TGG | - | chr6_4:810864-810883 | Msa0969300:intron | 35.0% |
| !! | TGGATGTCTTGGTCTTATTA+TGG | + | chr6_4:810967-810986 | Msa0969310:CDS | 35.0% |
| GGAATTGAAGAACTAGTAGA+AGG | - | chr6_4:811118-811137 | Msa0969300:intron | 35.0% | |
| TAAGGAGCTAAAGGGAAATC+TGG | - | chr6_4:810785-810804 | Msa0969300:intron | 40.0% | |
| GCTGGAAAATAAGGAGCTAA+AGG | - | chr6_4:810794-810813 | Msa0969300:intron | 40.0% | |
| ! | GGTTTATCGGCTGGAAAATA+AGG | - | chr6_4:810803-810822 | Msa0969300:intron | 40.0% |
| !!! | AGCATTTTTGGTTTATCGGC+TGG | - | chr6_4:810812-810831 | Msa0969300:intron | 40.0% |
| !!! | GGCGAGCATTTTTGGTTTAT+CGG | - | chr6_4:810816-810835 | Msa0969300:intron | 40.0% |
| ACCAAACAAACGATGAGCAT+TGG | - | chr6_4:810837-810856 | Msa0969300:intron | 40.0% | |
| TGGATTTGAGAACTAGTGGT+AGG | - | chr6_4:811310-811329 | Msa0969300:intron | 40.0% | |
| ! | ATGGATACAACAAGGGTACA+TGG | + | chr6_4:811409-811428 | Msa0969310:CDS | 40.0% |
| TACATGGTTGCACAACTGAT+TGG | + | chr6_4:811425-811444 | Msa0969310:CDS | 40.0% | |
| !!! | TGAGCATTGGCGAGCATTTT+TGG | - | chr6_4:810824-810843 | Msa0969300:intron | 45.0% |
| GCCAATGCTCATCGTTTGTT+TGG | + | chr6_4:810833-810852 | Msa0969310:CDS | 45.0% | |
| TTCCCAAGTCATGGATGTCT+TGG | + | chr6_4:810956-810975 | Msa0969310:CDS | 45.0% | |
| GACCAAGACATCCATGACTT+GGG | - | chr6_4:810961-810980 | Msa0969300:intron | 45.0% | |
| AGACCAAGACATCCATGACT+TGG | - | chr6_4:810962-810981 | Msa0969300:intron | 45.0% | |
| CGTGCAAGATTCCCAAGTCA+TGG | + | chr6_4:810947-810966 | Msa0969310:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 810719 | 811450 | 810719 | ID=Msa0969310;Name=Msa0969310 |
| chr6_4 | mRNA | 810719 | 811450 | 810719 | ID=Msa0969310-mRNA-1;Parent=Msa0969310;Name=Msa0969310-mRNA-1;_AED=0.02;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|243 |
| chr6_4 | exon | 810719 | 811450 | 810719 | ID=Msa0969310-mRNA-1:exon:395;Parent=Msa0969310-mRNA-1 |
| chr6_4 | CDS | 810719 | 811450 | 810719 | ID=Msa0969310-mRNA-1:cds;Parent=Msa0969310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
