Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970300 | KEH24770.1 | 89.583 | 144 | 12 | 1 | 37 | 177 | 1 | 144 | 2.13e-71 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970300 | sp|Q9STS6|LBD27_ARATH | 55.769 | 104 | 45 | 1 | 9 | 112 | 36 | 138 | 2.99e-33 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970300 | A0A072UG64 | 89.583 | 144 | 12 | 1 | 37 | 177 | 1 | 144 | 1.02e-71 | 224 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0970300 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970300 | MtrunA17_Chr6g0449311 | 89.583 | 144 | 12 | 1 | 37 | 177 | 1 | 144 | 1.96e-75 | 224 |
| Msa0970300 | MtrunA17_Chr5g0439111 | 63.924 | 158 | 45 | 4 | 1 | 153 | 1 | 151 | 2.38e-59 | 187 |
| Msa0970300 | MtrunA17_Chr6g0452661 | 47.826 | 230 | 72 | 6 | 1 | 227 | 1 | 185 | 3.10e-58 | 184 |
| Msa0970300 | MtrunA17_Chr4g0055441 | 62.590 | 139 | 38 | 3 | 10 | 145 | 3 | 130 | 1.27e-52 | 167 |
| Msa0970300 | MtrunA17_Chr6g0452691 | 56.081 | 148 | 52 | 3 | 1 | 142 | 1 | 141 | 6.66e-52 | 166 |
| Msa0970300 | MtrunA17_Chr6g0452671 | 55.634 | 142 | 56 | 3 | 1 | 140 | 1 | 137 | 6.19e-46 | 152 |
| Msa0970300 | MtrunA17_Chr4g0059901 | 50.467 | 107 | 52 | 1 | 8 | 114 | 9 | 114 | 3.99e-31 | 115 |
| Msa0970300 | MtrunA17_Chr8g0342351 | 39.535 | 172 | 73 | 3 | 8 | 161 | 11 | 169 | 1.84e-29 | 110 |
| Msa0970300 | MtrunA17_Chr4g0058651 | 38.806 | 134 | 70 | 2 | 7 | 140 | 9 | 130 | 9.61e-26 | 99.4 |
| Msa0970300 | MtrunA17_Chr3g0097221 | 44.643 | 112 | 61 | 1 | 7 | 118 | 5 | 115 | 1.07e-25 | 101 |
| Msa0970300 | MtrunA17_Chr7g0227511 | 44.898 | 98 | 53 | 1 | 7 | 104 | 9 | 105 | 3.91e-25 | 97.4 |
| Msa0970300 | MtrunA17_Chr2g0330201 | 44.954 | 109 | 59 | 1 | 8 | 116 | 18 | 125 | 5.87e-25 | 100 |
| Msa0970300 | MtrunA17_Chr5g0402611 | 42.857 | 105 | 59 | 1 | 7 | 111 | 6 | 109 | 5.28e-24 | 97.8 |
| Msa0970300 | MtrunA17_Chr8g0353981 | 49.398 | 83 | 41 | 1 | 7 | 89 | 5 | 86 | 8.01e-24 | 95.5 |
| Msa0970300 | MtrunA17_Chr3g0115431 | 43.137 | 102 | 57 | 1 | 10 | 111 | 10 | 110 | 1.13e-23 | 94.7 |
| Msa0970300 | MtrunA17_Chr3g0117121 | 43.878 | 98 | 54 | 1 | 7 | 104 | 8 | 104 | 2.68e-23 | 93.2 |
| Msa0970300 | MtrunA17_Chr4g0043421 | 38.168 | 131 | 79 | 2 | 10 | 140 | 16 | 144 | 3.14e-22 | 89.7 |
| Msa0970300 | MtrunA17_Chr6g0449641 | 41.837 | 98 | 56 | 1 | 7 | 104 | 7 | 103 | 4.25e-22 | 88.6 |
| Msa0970300 | MtrunA17_Chr5g0444351 | 31.250 | 144 | 95 | 2 | 10 | 153 | 6 | 145 | 4.93e-22 | 88.6 |
| Msa0970300 | MtrunA17_Chr2g0311601 | 37.500 | 120 | 68 | 2 | 10 | 129 | 14 | 126 | 1.49e-21 | 87.8 |
| Msa0970300 | MtrunA17_Chr5g0437571 | 37.931 | 116 | 70 | 2 | 7 | 122 | 4 | 117 | 2.64e-21 | 87.0 |
| Msa0970300 | MtrunA17_Chr6g0449651 | 40.816 | 98 | 57 | 1 | 7 | 104 | 65 | 161 | 4.99e-21 | 87.4 |
| Msa0970300 | MtrunA17_Chr7g0225111 | 37.273 | 110 | 68 | 1 | 10 | 119 | 6 | 114 | 6.77e-21 | 84.7 |
| Msa0970300 | MtrunA17_Chr4g0030001 | 40.351 | 114 | 65 | 3 | 10 | 122 | 25 | 136 | 1.03e-20 | 86.3 |
| Msa0970300 | MtrunA17_Chr5g0437401 | 35.780 | 109 | 69 | 1 | 5 | 113 | 7 | 114 | 1.08e-20 | 85.9 |
| Msa0970300 | MtrunA17_Chr5g0438091 | 32.331 | 133 | 88 | 2 | 10 | 142 | 40 | 170 | 1.46e-20 | 85.9 |
| Msa0970300 | MtrunA17_Chr3g0106101 | 36.937 | 111 | 68 | 2 | 10 | 120 | 8 | 116 | 5.38e-20 | 84.0 |
| Msa0970300 | MtrunA17_Chr8g0374591 | 38.462 | 104 | 63 | 1 | 8 | 111 | 7 | 109 | 7.09e-20 | 82.4 |
| Msa0970300 | MtrunA17_Chr8g0374601 | 39.423 | 104 | 62 | 1 | 8 | 111 | 25 | 127 | 2.81e-19 | 84.3 |
| Msa0970300 | MtrunA17_Chr4g0040831 | 32.558 | 129 | 78 | 3 | 8 | 132 | 14 | 137 | 3.29e-19 | 82.4 |
| Msa0970300 | MtrunA17_Chr3g0114061 | 39.423 | 104 | 61 | 2 | 10 | 113 | 9 | 110 | 8.28e-19 | 80.5 |
| Msa0970300 | MtrunA17_Chr5g0432451 | 32.576 | 132 | 84 | 2 | 10 | 141 | 44 | 170 | 9.61e-19 | 82.0 |
| Msa0970300 | MtrunA17_Chr3g0113891 | 37.500 | 104 | 64 | 1 | 5 | 108 | 10 | 112 | 1.13e-18 | 80.9 |
| Msa0970300 | MtrunA17_Chr1g0200201 | 36.434 | 129 | 70 | 4 | 10 | 129 | 73 | 198 | 1.37e-18 | 81.6 |
| Msa0970300 | MtrunA17_Chr3g0129071 | 36.735 | 98 | 61 | 1 | 10 | 107 | 48 | 144 | 2.27e-18 | 80.9 |
| Msa0970300 | MtrunA17_Chr7g0260971 | 38.835 | 103 | 61 | 2 | 10 | 111 | 15 | 116 | 1.46e-16 | 75.9 |
| Msa0970300 | MtrunA17_Chr8g0351721 | 34.862 | 109 | 69 | 2 | 4 | 111 | 13 | 120 | 6.09e-15 | 71.2 |
| Msa0970300 | MtrunA17_Chr7g0245871 | 35.354 | 99 | 62 | 2 | 10 | 107 | 28 | 125 | 2.61e-14 | 70.1 |
| Msa0970300 | MtrunA17_Chr1g0184281 | 36.364 | 99 | 61 | 2 | 10 | 107 | 16 | 113 | 3.64e-14 | 68.9 |
| Msa0970300 | MtrunA17_Chr8g0351701 | 33.981 | 103 | 66 | 2 | 10 | 111 | 24 | 125 | 4.26e-14 | 69.3 |
| Msa0970300 | MtrunA17_Chr4g0046201 | 37.500 | 88 | 54 | 1 | 9 | 96 | 6 | 92 | 7.07e-14 | 69.3 |
| Msa0970300 | MtrunA17_Chr6g0460951 | 33.333 | 102 | 66 | 2 | 10 | 110 | 41 | 141 | 1.36e-13 | 67.8 |
| Msa0970300 | MtrunA17_Chr1g0184271 | 26.404 | 178 | 107 | 6 | 10 | 185 | 13 | 168 | 8.06e-13 | 65.9 |
| Msa0970300 | MtrunA17_Chr8g0374581 | 34.615 | 104 | 66 | 2 | 8 | 110 | 7 | 109 | 9.77e-13 | 65.5 |
| Msa0970300 | MtrunA17_Chr6g0460941 | 35.227 | 88 | 55 | 2 | 10 | 96 | 8 | 94 | 1.75e-12 | 61.6 |
| Msa0970300 | MtrunA17_Chr5g0435641 | 28.302 | 106 | 74 | 2 | 7 | 111 | 5 | 109 | 6.22e-12 | 62.8 |
| Msa0970300 | MtrunA17_Chr2g0326041 | 50.000 | 48 | 24 | 0 | 10 | 57 | 34 | 81 | 3.40e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0970300 | AT3G47870.1 | 55.769 | 104 | 45 | 1 | 9 | 112 | 36 | 138 | 3.04e-34 | 125 |
| Msa0970300 | AT3G13850.1 | 43.243 | 148 | 79 | 3 | 8 | 152 | 35 | 180 | 4.61e-30 | 113 |
| Msa0970300 | AT3G27650.1 | 42.424 | 99 | 56 | 1 | 7 | 105 | 37 | 134 | 2.75e-23 | 92.4 |
| Msa0970300 | AT5G63090.4 | 41.818 | 110 | 63 | 1 | 7 | 116 | 9 | 117 | 4.80e-23 | 92.8 |
| Msa0970300 | AT5G63090.3 | 41.818 | 110 | 63 | 1 | 7 | 116 | 9 | 117 | 4.80e-23 | 92.8 |
| Msa0970300 | AT5G63090.2 | 41.818 | 110 | 63 | 1 | 7 | 116 | 9 | 117 | 4.80e-23 | 92.8 |
| Msa0970300 | AT5G63090.1 | 41.818 | 110 | 63 | 1 | 7 | 116 | 9 | 117 | 4.80e-23 | 92.8 |
| Msa0970300 | AT1G65620.1 | 46.988 | 83 | 43 | 1 | 7 | 89 | 7 | 88 | 2.02e-22 | 91.3 |
| Msa0970300 | AT1G65620.4 | 46.988 | 83 | 43 | 1 | 7 | 89 | 7 | 88 | 2.02e-22 | 91.3 |
| Msa0970300 | AT1G65620.3 | 46.988 | 83 | 43 | 1 | 7 | 89 | 7 | 88 | 2.02e-22 | 91.3 |
| Msa0970300 | AT1G65620.5 | 46.988 | 83 | 43 | 1 | 7 | 89 | 7 | 88 | 2.02e-22 | 91.3 |
| Msa0970300 | AT1G65620.2 | 46.988 | 83 | 43 | 1 | 7 | 89 | 7 | 88 | 2.02e-22 | 91.3 |
| Msa0970300 | AT3G26660.1 | 39.130 | 115 | 67 | 2 | 8 | 120 | 4 | 117 | 2.12e-22 | 89.0 |
| Msa0970300 | AT5G66870.1 | 41.176 | 102 | 59 | 1 | 10 | 111 | 8 | 108 | 8.39e-22 | 92.0 |
| Msa0970300 | AT1G31320.1 | 45.263 | 95 | 48 | 2 | 5 | 96 | 6 | 99 | 2.35e-21 | 87.8 |
| Msa0970300 | AT3G26620.1 | 38.393 | 112 | 66 | 2 | 8 | 117 | 4 | 114 | 5.39e-21 | 85.5 |
| Msa0970300 | AT1G72980.1 | 41.071 | 112 | 64 | 2 | 9 | 119 | 13 | 123 | 1.10e-20 | 87.0 |
| Msa0970300 | AT1G07900.1 | 41.489 | 94 | 54 | 1 | 10 | 103 | 34 | 126 | 1.38e-19 | 83.6 |
| Msa0970300 | AT2G30130.1 | 40.385 | 104 | 60 | 2 | 10 | 113 | 9 | 110 | 9.03e-19 | 81.6 |
| Msa0970300 | AT2G28500.1 | 37.391 | 115 | 70 | 2 | 10 | 124 | 56 | 168 | 1.39e-18 | 82.0 |
| Msa0970300 | AT2G30340.2 | 38.776 | 98 | 59 | 1 | 10 | 107 | 54 | 150 | 1.56e-18 | 82.4 |
| Msa0970300 | AT2G30340.1 | 38.776 | 98 | 59 | 1 | 10 | 107 | 53 | 149 | 1.88e-18 | 82.0 |
| Msa0970300 | AT2G40470.2 | 33.813 | 139 | 82 | 4 | 10 | 148 | 21 | 149 | 4.27e-18 | 79.7 |
| Msa0970300 | AT2G40470.1 | 33.813 | 139 | 82 | 4 | 10 | 148 | 46 | 174 | 6.78e-18 | 79.7 |
| Msa0970300 | AT2G23660.2 | 40.594 | 101 | 59 | 1 | 10 | 110 | 6 | 105 | 7.61e-18 | 81.3 |
| Msa0970300 | AT2G23660.3 | 40.594 | 101 | 59 | 1 | 10 | 110 | 6 | 105 | 7.61e-18 | 81.3 |
| Msa0970300 | AT2G23660.1 | 40.594 | 101 | 59 | 1 | 10 | 110 | 6 | 105 | 7.61e-18 | 81.3 |
| Msa0970300 | AT3G11090.1 | 35.354 | 99 | 63 | 1 | 5 | 103 | 7 | 104 | 8.33e-18 | 78.2 |
| Msa0970300 | AT1G16530.1 | 36.283 | 113 | 63 | 3 | 5 | 109 | 10 | 121 | 1.49e-17 | 77.4 |
| Msa0970300 | AT5G15060.1 | 45.946 | 74 | 39 | 1 | 10 | 82 | 18 | 91 | 3.53e-17 | 75.9 |
| Msa0970300 | AT1G06280.1 | 38.298 | 94 | 53 | 3 | 8 | 101 | 23 | 111 | 1.58e-15 | 73.2 |
| Msa0970300 | AT2G19820.1 | 34.343 | 99 | 62 | 1 | 1 | 96 | 1 | 99 | 2.52e-15 | 70.5 |
| Msa0970300 | AT3G50510.1 | 37.143 | 105 | 64 | 2 | 10 | 113 | 13 | 116 | 2.60e-15 | 72.4 |
| Msa0970300 | AT3G50510.2 | 37.143 | 105 | 64 | 2 | 10 | 113 | 13 | 116 | 2.60e-15 | 72.4 |
| Msa0970300 | AT2G42430.1 | 28.966 | 145 | 101 | 2 | 10 | 153 | 16 | 159 | 3.74e-15 | 72.8 |
| Msa0970300 | AT4G00210.1 | 33.333 | 138 | 84 | 4 | 10 | 145 | 12 | 143 | 6.16e-15 | 71.6 |
| Msa0970300 | AT4G00220.1 | 34.286 | 105 | 67 | 2 | 12 | 115 | 20 | 123 | 7.14e-14 | 68.9 |
| Msa0970300 | AT3G58190.1 | 35.000 | 100 | 63 | 2 | 10 | 108 | 12 | 110 | 2.55e-13 | 67.4 |
| Msa0970300 | AT2G42440.1 | 33.000 | 100 | 65 | 2 | 10 | 108 | 8 | 106 | 2.78e-13 | 67.8 |
| Msa0970300 | AT2G45420.1 | 33.333 | 105 | 68 | 2 | 12 | 115 | 40 | 143 | 5.64e-13 | 67.0 |
| Msa0970300 | AT3G03760.1 | 34.314 | 102 | 65 | 2 | 10 | 110 | 52 | 152 | 1.90e-12 | 65.5 |
| Msa0970300 | AT5G35900.1 | 28.431 | 102 | 72 | 1 | 10 | 111 | 6 | 106 | 7.54e-12 | 63.2 |
| Msa0970300 | AT2G31310.1 | 28.689 | 122 | 77 | 3 | 10 | 122 | 8 | 128 | 1.06e-11 | 62.4 |
| Msa0970300 | AT2G45410.1 | 35.644 | 101 | 63 | 2 | 12 | 111 | 19 | 118 | 1.94e-11 | 61.6 |
Find 27 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCAACATTGCTAGATAT+TGG | 0.233878 | 6_4:-1770674 | Msa0970290:intron |
| TCACCAACATTGTTAAATAT+TGG | 0.234385 | 6_4:-1770501 | Msa0970290:intron |
| CTTTCTTCTTTGATATTTGC+AGG | 0.243555 | 6_4:-1770118 | Msa0970290:intron |
| ATTATTATGTGATAATAATA+AGG | 0.272056 | 6_4:-1770528 | Msa0970290:intron |
| TGGATGTCTTGGTCTTATTA+TGG | 0.281895 | 6_4:+1770332 | Msa0970300:CDS |
| GGTTTATCGGCTGGAAAATA+AGG | 0.296290 | 6_4:-1770165 | Msa0970290:intron |
| ATAATGAATACTCAAGTTCT+TGG | 0.299220 | 6_4:+1770546 | Msa0970300:CDS |
| GCCAATGCTCATCGTTTGTT+TGG | 0.347008 | 6_4:+1770198 | Msa0970300:CDS |
| TAAGGAGCTAAAGGGAAATC+TGG | 0.373984 | 6_4:-1770147 | Msa0970290:intron |
| ATTCCAATATTTAACAATGT+TGG | 0.448330 | 6_4:+1770498 | Msa0970300:CDS |
| TCTTCTACATTTCTCTTCAT+CGG | 0.464845 | 6_4:+1770443 | Msa0970300:CDS |
| GGAATTGAAGAACTAGTAGA+AGG | 0.471090 | 6_4:-1770480 | Msa0970290:intron |
| TTCCCAAGTCATGGATGTCT+TGG | 0.482571 | 6_4:+1770321 | Msa0970300:CDS |
| GCTGGAAAATAAGGAGCTAA+AGG | 0.488184 | 6_4:-1770156 | Msa0970290:intron |
| CTGGAAAATAAGGAGCTAAA+GGG | 0.491954 | 6_4:-1770155 | Msa0970290:intron |
| GAATGATCCATTGAAAAGTA+AGG | 0.496518 | 6_4:-1770624 | Msa0970290:intron |
| AATCCAATATCTAGCAATGT+TGG | 0.505027 | 6_4:+1770671 | Msa0970300:CDS |
| ATGGATACAACAAGGGTACA+TGG | 0.514070 | 6_4:+1770756 | Msa0970300:CDS |
| AGACCAAGACATCCATGACT+TGG | 0.541471 | 6_4:-1770324 | Msa0970290:intron |
| ACCAAACAAACGATGAGCAT+TGG | 0.553402 | 6_4:-1770199 | Msa0970290:intron |
| CGTGCAAGATTCCCAAGTCA+TGG | 0.565788 | 6_4:+1770312 | Msa0970300:CDS |
| TACATGGTTGCACAACTGAT+TGG | 0.568443 | 6_4:+1770772 | Msa0970300:CDS |
| GTAAATTTGTTAACATCGTG+AGG | 0.570877 | 6_4:-1770705 | Msa0970290:intron |
| GACCAAGACATCCATGACTT+GGG | 0.599785 | 6_4:-1770323 | Msa0970290:intron |
| ATATTGGATTTGAGAACTAG+TGG | 0.602290 | 6_4:-1770658 | Msa0970290:intron |
| TTTGTTTGGTATTTCCAACA+TGG | 0.612102 | 6_4:+1770212 | Msa0970300:CDS |
| TGGATTTGAGAACTAGTGGT+AGG | 0.612330 | 6_4:-1770654 | Msa0970290:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATGTGATAATAATA+AGG | - | chr6_4:1770531-1770550 | Msa0970290:intron | 10.0% |
| !!! | AAATTCGAATATAAATTTTA+TGG | + | chr6_4:1770737-1770756 | Msa0970300:CDS | 10.0% |
| !! | ATTCCAATATTTAACAATGT+TGG | + | chr6_4:1770498-1770517 | Msa0970300:CDS | 20.0% |
| !!! | TAAATTTTATGGATACAACA+AGG | + | chr6_4:1770748-1770767 | Msa0970300:CDS | 20.0% |
| !!! | AAATTTTATGGATACAACAA+GGG | + | chr6_4:1770749-1770768 | Msa0970300:CDS | 20.0% |
| !!! | GAAGTCAATTATTTTTGAGT+CGG | + | chr6_4:1770284-1770303 | Msa0970300:CDS | 25.0% |
| ! | TCACCAACATTGTTAAATAT+TGG | - | chr6_4:1770504-1770523 | Msa0970290:intron | 25.0% |
| ! | ATAATGAATACTCAAGTTCT+TGG | + | chr6_4:1770546-1770565 | Msa0970300:CDS | 25.0% |
| !!! | TAATCTACCTTACTTTTCAA+TGG | + | chr6_4:1770617-1770636 | Msa0970300:CDS | 25.0% |
| GGATATTCACAGAAAAAACA+AGG | + | chr6_4:1770086-1770105 | Msa0970300:CDS | 30.0% | |
| CTTTCTTCTTTGATATTTGC+AGG | - | chr6_4:1770121-1770140 | Msa0970290:intron | 30.0% | |
| TTTGTTTGGTATTTCCAACA+TGG | + | chr6_4:1770212-1770231 | Msa0970300:CDS | 30.0% | |
| TCTTCTACATTTCTCTTCAT+CGG | + | chr6_4:1770443-1770462 | Msa0970300:CDS | 30.0% | |
| GAATGATCCATTGAAAAGTA+AGG | - | chr6_4:1770627-1770646 | Msa0970290:intron | 30.0% | |
| ATATTGGATTTGAGAACTAG+TGG | - | chr6_4:1770661-1770680 | Msa0970290:intron | 30.0% | |
| AATCCAATATCTAGCAATGT+TGG | + | chr6_4:1770671-1770690 | Msa0970300:CDS | 30.0% | |
| TTACCAACATTGCTAGATAT+TGG | - | chr6_4:1770677-1770696 | Msa0970290:intron | 30.0% | |
| !! | GTAAATTTGTTAACATCGTG+AGG | - | chr6_4:1770708-1770727 | Msa0970290:intron | 30.0% |
| CTGGAAAATAAGGAGCTAAA+GGG | - | chr6_4:1770158-1770177 | Msa0970290:intron | 35.0% | |
| ! | TTTTAGCATCTTCACCATGT+TGG | - | chr6_4:1770229-1770248 | Msa0970290:intron | 35.0% |
| !! | TGGATGTCTTGGTCTTATTA+TGG | + | chr6_4:1770332-1770351 | Msa0970300:CDS | 35.0% |
| GGAATTGAAGAACTAGTAGA+AGG | - | chr6_4:1770483-1770502 | Msa0970290:intron | 35.0% | |
| TAAGGAGCTAAAGGGAAATC+TGG | - | chr6_4:1770150-1770169 | Msa0970290:intron | 40.0% | |
| GCTGGAAAATAAGGAGCTAA+AGG | - | chr6_4:1770159-1770178 | Msa0970290:intron | 40.0% | |
| ! | GGTTTATCGGCTGGAAAATA+AGG | - | chr6_4:1770168-1770187 | Msa0970290:intron | 40.0% |
| !!! | AGCATTTTTGGTTTATCGGC+TGG | - | chr6_4:1770177-1770196 | Msa0970290:intron | 40.0% |
| !!! | GGCGAGCATTTTTGGTTTAT+CGG | - | chr6_4:1770181-1770200 | Msa0970290:intron | 40.0% |
| ACCAAACAAACGATGAGCAT+TGG | - | chr6_4:1770202-1770221 | Msa0970290:intron | 40.0% | |
| TGGATTTGAGAACTAGTGGT+AGG | - | chr6_4:1770657-1770676 | Msa0970290:intron | 40.0% | |
| ! | ATGGATACAACAAGGGTACA+TGG | + | chr6_4:1770756-1770775 | Msa0970300:CDS | 40.0% |
| TACATGGTTGCACAACTGAT+TGG | + | chr6_4:1770772-1770791 | Msa0970300:CDS | 40.0% | |
| !!! | TGAGCATTGGCGAGCATTTT+TGG | - | chr6_4:1770189-1770208 | Msa0970290:intron | 45.0% |
| GCCAATGCTCATCGTTTGTT+TGG | + | chr6_4:1770198-1770217 | Msa0970300:CDS | 45.0% | |
| TTCCCAAGTCATGGATGTCT+TGG | + | chr6_4:1770321-1770340 | Msa0970300:CDS | 45.0% | |
| GACCAAGACATCCATGACTT+GGG | - | chr6_4:1770326-1770345 | Msa0970290:intron | 45.0% | |
| AGACCAAGACATCCATGACT+TGG | - | chr6_4:1770327-1770346 | Msa0970290:intron | 45.0% | |
| CGTGCAAGATTCCCAAGTCA+TGG | + | chr6_4:1770312-1770331 | Msa0970300:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 1770084 | 1770797 | 1770084 | ID=Msa0970300;Name=Msa0970300 |
| chr6_4 | mRNA | 1770084 | 1770797 | 1770084 | ID=Msa0970300-mRNA-1;Parent=Msa0970300;Name=Msa0970300-mRNA-1;_AED=0.02;_eAED=0.10;_QI=0|-1|0|1|-1|1|1|0|237 |
| chr6_4 | exon | 1770084 | 1770797 | 1770084 | ID=Msa0970300-mRNA-1:exon:845;Parent=Msa0970300-mRNA-1 |
| chr6_4 | CDS | 1770084 | 1770797 | 1770084 | ID=Msa0970300-mRNA-1:cds;Parent=Msa0970300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
