Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970720 | PNX89196.1 | 73.196 | 194 | 52 | 0 | 73 | 266 | 7 | 200 | 4.87e-94 | 293 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970720 | sp|Q9LKR4|FRS10_ARATH | 33.951 | 162 | 103 | 3 | 101 | 259 | 61 | 221 | 5.35e-17 | 86.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970720 | A0A2K3MEL2 | 73.196 | 194 | 52 | 0 | 73 | 266 | 7 | 200 | 2.32e-94 | 293 |
Gene ID | Type | Classification |
---|---|---|
Msa0970720 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970720 | MtrunA17_Chr1g0203051 | 34.553 | 246 | 155 | 2 | 13 | 258 | 3 | 242 | 1.12e-46 | 169 |
Msa0970720 | MtrunA17_Chr1g0171741 | 40.741 | 162 | 94 | 2 | 64 | 225 | 103 | 262 | 7.34e-33 | 124 |
Msa0970720 | MtrunA17_Chr2g0287651 | 34.715 | 193 | 125 | 1 | 94 | 285 | 74 | 266 | 7.96e-33 | 130 |
Msa0970720 | MtrunA17_Chr8g0389811 | 35.821 | 134 | 86 | 0 | 73 | 206 | 62 | 195 | 1.51e-27 | 108 |
Msa0970720 | MtrunA17_Chr2g0331371 | 37.576 | 165 | 99 | 2 | 45 | 206 | 3 | 166 | 4.24e-27 | 107 |
Msa0970720 | MtrunA17_Chr6g0473421 | 38.760 | 129 | 75 | 2 | 45 | 170 | 3 | 130 | 7.57e-22 | 91.3 |
Msa0970720 | MtrunA17_Chr1g0172931 | 39.655 | 116 | 66 | 2 | 63 | 177 | 46 | 158 | 6.29e-20 | 86.3 |
Msa0970720 | MtrunA17_Chr5g0448761 | 34.568 | 162 | 100 | 3 | 100 | 257 | 65 | 224 | 4.17e-16 | 80.5 |
Msa0970720 | MtrunA17_Chr1g0198761 | 31.220 | 205 | 112 | 8 | 93 | 272 | 42 | 242 | 6.30e-16 | 79.7 |
Msa0970720 | MtrunA17_Chr2g0290391 | 33.333 | 171 | 108 | 4 | 101 | 267 | 57 | 225 | 1.10e-15 | 79.0 |
Msa0970720 | MtrunA17_Chr5g0431001 | 30.208 | 192 | 112 | 6 | 101 | 272 | 67 | 256 | 5.36e-15 | 76.6 |
Msa0970720 | MtrunA17_Chr2g0276841 | 33.566 | 143 | 88 | 4 | 101 | 238 | 76 | 216 | 3.30e-14 | 74.7 |
Msa0970720 | MtrunA17_Chr2g0277171 | 56.250 | 80 | 34 | 1 | 1 | 80 | 1 | 79 | 2.15e-12 | 62.4 |
Msa0970720 | MtrunA17_Chr1g0202341 | 28.395 | 162 | 111 | 3 | 100 | 260 | 56 | 213 | 3.91e-12 | 68.2 |
Msa0970720 | MtrunA17_Chr2g0294841 | 32.022 | 178 | 102 | 7 | 101 | 265 | 51 | 222 | 4.83e-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970720 | AT5G28530.5 | 33.529 | 170 | 109 | 3 | 101 | 267 | 61 | 229 | 4.60e-18 | 86.7 |
Msa0970720 | AT5G28530.4 | 33.529 | 170 | 109 | 3 | 101 | 267 | 61 | 229 | 4.80e-18 | 86.7 |
Msa0970720 | AT5G28530.3 | 33.951 | 162 | 103 | 3 | 101 | 259 | 61 | 221 | 5.42e-18 | 86.7 |
Msa0970720 | AT5G28530.2 | 33.951 | 162 | 103 | 3 | 101 | 259 | 61 | 221 | 5.42e-18 | 86.7 |
Msa0970720 | AT5G28530.1 | 33.951 | 162 | 103 | 3 | 101 | 259 | 61 | 221 | 5.44e-18 | 86.7 |
Msa0970720 | AT4G38180.1 | 35.294 | 170 | 100 | 5 | 95 | 257 | 70 | 236 | 5.98e-15 | 77.4 |
Msa0970720 | AT1G10240.2 | 30.636 | 173 | 108 | 6 | 101 | 265 | 54 | 222 | 6.01e-14 | 73.9 |
Msa0970720 | AT1G10240.1 | 30.636 | 173 | 108 | 6 | 101 | 265 | 54 | 222 | 6.01e-14 | 73.9 |
Find 89 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCAATTGTGTTTAACGATA+TGG | 0.229082 | 6_4:-2363017 | Msa0970720:CDS |
TCTATTGAAGATGGATTAGA+TGG | 0.310425 | 6_4:-2363052 | Msa0970720:CDS |
CAATCTGCAGCAAGATATTC+TGG | 0.314174 | 6_4:-2361237 | Msa0970720:intron |
TCATTTACCGTAGGCAAAAC+TGG | 0.325615 | 6_4:+2361078 | None:intergenic |
TGTAGTAATTGTGGTGTAAT+AGG | 0.325728 | 6_4:-2360961 | Msa0970720:CDS |
CAGCTAAATTTAAATCTTCC+TGG | 0.331544 | 6_4:-2360916 | Msa0970720:CDS |
CAGCAACTTCTTTGCACAAC+TGG | 0.354915 | 6_4:+2361208 | None:intergenic |
TACGTAAGGGTCAAATGATT+AGG | 0.360442 | 6_4:-2362871 | Msa0970720:CDS |
TGTTGGTTTGCTAGAATGTC+CGG | 0.368843 | 6_4:-2362902 | Msa0970720:CDS |
GAAGATGGATTAGATGGTTC+AGG | 0.371824 | 6_4:-2363046 | Msa0970720:CDS |
GCAATTGTGTTTAACGATAT+GGG | 0.394378 | 6_4:-2363016 | Msa0970720:CDS |
TGGCCATGGTACCGTACATT+TGG | 0.419221 | 6_4:+2362540 | None:intergenic |
CGTTGCGTGGCTCACGCCTT+CGG | 0.424339 | 6_4:+2362765 | None:intergenic |
TGAAGGGTTTAGAGAGGATA+GGG | 0.425140 | 6_4:-2362804 | Msa0970720:CDS |
ACGTAAGGGTCAAATGATTA+GGG | 0.438100 | 6_4:-2362870 | Msa0970720:CDS |
GTCCGGGTTCTCTGTACGTA+AGG | 0.442552 | 6_4:-2362885 | Msa0970720:CDS |
TTCAAATTCGTCTTCACCAT+TGG | 0.445525 | 6_4:+2360876 | None:intergenic |
GAGGCAAATTCTATTGAAGA+TGG | 0.447194 | 6_4:-2363061 | Msa0970720:CDS |
TAGCAAACCAACAATAAAAC+AGG | 0.448653 | 6_4:+2362912 | None:intergenic |
TGCGTGCGTTTGCGCCTGCC+TGG | 0.457056 | 6_4:+2360988 | None:intergenic |
AAACTCACAAGTATCTTTGC+CGG | 0.460720 | 6_4:-2363098 | Msa0970720:CDS |
AATTCGTCTTCACCATTGGC+AGG | 0.467391 | 6_4:+2360880 | None:intergenic |
CCACATCTTGTTTCGTTGCG+TGG | 0.468890 | 6_4:+2362752 | None:intergenic |
GGGTCAAATGATTAGGGATC+GGG | 0.473894 | 6_4:-2362864 | Msa0970720:CDS |
CGAAACAAGATGTGGATGTA+AGG | 0.474068 | 6_4:-2362744 | Msa0970720:CDS |
GGTACCATGGCCAATGCATC+CGG | 0.478832 | 6_4:-2362530 | Msa0970720:CDS |
TCACTCATCTTTCTGTATGC+AGG | 0.482247 | 6_4:+2362614 | None:intergenic |
CCTTTCGTTCTAACAACCTC+AGG | 0.487809 | 6_4:+2361036 | None:intergenic |
GTTTACGTTGTTTACCAACT+TGG | 0.488147 | 6_4:+2362465 | None:intergenic |
ATGTTGGGTGGGACTTTGTG+TGG | 0.491891 | 6_4:-2362644 | Msa0970720:CDS |
CAGTTGTGCAAAGAAGTTGC+TGG | 0.503687 | 6_4:-2361207 | Msa0970720:CDS |
TTCTAACAACCTCAGGATCA+AGG | 0.512314 | 6_4:+2361043 | None:intergenic |
AAGGATTTGTATAACCAAGT+TGG | 0.513872 | 6_4:-2362479 | Msa0970720:intron |
GCCTCTTCTTCAGATTCGAC+CGG | 0.514599 | 6_4:+2363079 | None:intergenic |
ATTGAACGCAGTAGAAAAGC+AGG | 0.515481 | 6_4:-2362575 | Msa0970720:CDS |
GTGAAAACCACCGGATGCAT+TGG | 0.516512 | 6_4:+2362520 | None:intergenic |
TGATCATAACCATGATATGT+TGG | 0.520526 | 6_4:-2362660 | Msa0970720:CDS |
TTGCTACGGGTACTCCAGGC+AGG | 0.522386 | 6_4:-2361002 | Msa0970720:CDS |
AAGTCCCACCCAACATATCA+TGG | 0.526054 | 6_4:+2362651 | None:intergenic |
CCTGAGGTTGTTAGAACGAA+AGG | 0.527309 | 6_4:-2361036 | Msa0970720:CDS |
AGGATGTGGTTCAATTGCTA+CGG | 0.528366 | 6_4:-2361016 | Msa0970720:CDS |
GATGAGTGAAGGTGATATTG+AGG | 0.533926 | 6_4:-2362600 | Msa0970720:CDS |
TCAATTGCTACGGGTACTCC+AGG | 0.535102 | 6_4:-2361006 | Msa0970720:CDS |
AACAAACGATCTCCACCCTC+TGG | 0.540136 | 6_4:+2363332 | None:intergenic |
ATGGTACCGTACATTTGGTA+TGG | 0.543018 | 6_4:+2362545 | None:intergenic |
ACCAACCTTGTGAAAACCAC+CGG | 0.551580 | 6_4:+2362511 | None:intergenic |
GATCATAACCATGATATGTT+GGG | 0.552642 | 6_4:-2362659 | Msa0970720:CDS |
AGGGTCAAATGATTAGGGAT+CGG | 0.556672 | 6_4:-2362865 | Msa0970720:CDS |
TAGACATTGTTACAAAGCGT+TGG | 0.557208 | 6_4:-2362703 | Msa0970720:CDS |
GTTGTTAGAACGAAAGGATG+TGG | 0.560820 | 6_4:-2361030 | Msa0970720:CDS |
GTTGGTTTGCTAGAATGTCC+GGG | 0.563741 | 6_4:-2362901 | Msa0970720:CDS |
GGATGTGGTTCAATTGCTAC+GGG | 0.579078 | 6_4:-2361015 | Msa0970720:CDS |
GCCGGTCGAATCTGAAGAAG+AGG | 0.579413 | 6_4:-2363080 | Msa0970720:CDS |
GGAAGATTTAAATTTAGCTG+TGG | 0.581102 | 6_4:+2360919 | None:intergenic |
TTGTAGGATATTGGCACACA+AGG | 0.581110 | 6_4:-2360702 | Msa0970720:intron |
GTGGACAACATCGTCTATTG+TGG | 0.581267 | 6_4:+2360938 | None:intergenic |
TCGTCTTCCTCATTTACCGT+AGG | 0.582575 | 6_4:+2361069 | None:intergenic |
GTGAAGGGTTTAGAGAGGAT+AGG | 0.583533 | 6_4:-2362805 | Msa0970720:CDS |
ACCCTTACGTACAGAGAACC+CGG | 0.584162 | 6_4:+2362883 | None:intergenic |
TTCATGTGAAGGGTTTAGAG+AGG | 0.585894 | 6_4:-2362810 | Msa0970720:CDS |
AGTTATGGATTGTAGACCAG+AGG | 0.597894 | 6_4:-2363348 | None:intergenic |
GAAGGGTTTAGAGAGGATAG+GGG | 0.605796 | 6_4:-2362803 | Msa0970720:CDS |
GGTTAACAAGGGAGAACCGA+AGG | 0.608301 | 6_4:-2362781 | Msa0970720:CDS |
ACGCAAACTTGTAGTAATTG+TGG | 0.610538 | 6_4:-2360970 | Msa0970720:CDS |
AAGGGTTTAGAGAGGATAGG+GGG | 0.612598 | 6_4:-2362802 | Msa0970720:CDS |
ATAAGACCATACCAAATGTA+CGG | 0.618674 | 6_4:-2362551 | Msa0970720:CDS |
TCCGGGTTCTCTGTACGTAA+GGG | 0.618976 | 6_4:-2362884 | Msa0970720:CDS |
CATAACCATGATATGTTGGG+TGG | 0.621498 | 6_4:-2362656 | Msa0970720:CDS |
ATAACCATGATATGTTGGGT+GGG | 0.626489 | 6_4:-2362655 | Msa0970720:CDS |
AGACGAACTCCTTGATCCTG+AGG | 0.627835 | 6_4:-2361052 | Msa0970720:CDS |
ACCACCGGATGCATTGGCCA+TGG | 0.631660 | 6_4:+2362526 | None:intergenic |
GATGGTAGCAACACGTCAAG+CGG | 0.631845 | 6_4:-2363154 | Msa0970720:CDS |
CATACACTTAATCCTGCCAA+TGG | 0.635369 | 6_4:-2360892 | Msa0970720:CDS |
TTTGCATTGATGATGTTGGA+AGG | 0.635495 | 6_4:-2362964 | Msa0970720:CDS |
ATACCAAATGTACGGTACCA+TGG | 0.637363 | 6_4:-2362543 | Msa0970720:CDS |
TGATATAATGAAGTTTGACA+TGG | 0.637415 | 6_4:-2362993 | Msa0970720:CDS |
GTTATGGATTGTAGACCAGA+GGG | 0.639635 | 6_4:-2363347 | Msa0970720:CDS |
GCATACAGAAAGATGAGTGA+AGG | 0.639842 | 6_4:-2362611 | Msa0970720:CDS |
AAACCAACAATAAAACAGGT+AGG | 0.641669 | 6_4:+2362916 | None:intergenic |
ACCATGGCCAATGCATCCGG+TGG | 0.644970 | 6_4:-2362527 | Msa0970720:CDS |
CTACTATAGTCAGACTCAGA+CGG | 0.647730 | 6_4:-2360833 | Msa0970720:intron |
CCACGCAACGAAACAAGATG+TGG | 0.660406 | 6_4:-2362752 | Msa0970720:CDS |
GGTAGCAACACGTCAAGCGG+TGG | 0.661636 | 6_4:-2363151 | Msa0970720:CDS |
TTGAACGCAGTAGAAAAGCA+GGG | 0.669009 | 6_4:-2362574 | Msa0970720:CDS |
GATGGATTAGATGGTTCAGG+TGG | 0.676772 | 6_4:-2363043 | Msa0970720:CDS |
GCAGGATTAAGTGTATGACC+AGG | 0.677736 | 6_4:+2360898 | None:intergenic |
ATGGATTGTAGACCAGAGGG+TGG | 0.690600 | 6_4:-2363344 | Msa0970720:CDS |
GACACGACAGAAGAAAGTGA+TGG | 0.695407 | 6_4:-2363172 | Msa0970720:CDS |
CAAATGATTAGGGATCGGGA+AGG | 0.764049 | 6_4:-2362860 | Msa0970720:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTTTTATTTTTTAAAA+TGG | - | chr6_4:2360817-2360836 | Msa0970720:intron | 0.0% |
!!! | TTTTCTTTAATTTTAATCTA+TGG | + | chr6_4:2362921-2362940 | None:intergenic | 10.0% |
!! | TTTAAAAAAAATGATGAAAA+AGG | + | chr6_4:2363243-2363262 | None:intergenic | 10.0% |
!! | TTATATTAAAAAATGCATGT+TGG | - | chr6_4:2362081-2362100 | Msa0970720:intron | 15.0% |
!! | TATATTAAAAAATGCATGTT+GGG | - | chr6_4:2362082-2362101 | Msa0970720:intron | 15.0% |
!! | TAAGTGTTATCAAAATTTAA+AGG | + | chr6_4:2363292-2363311 | None:intergenic | 15.0% |
!!! | AATTTTTAAGTGCTATGAAA+GGG | - | chr6_4:2361912-2361931 | Msa0970720:intron | 20.0% |
!! | TGTATGAGAAAAAAAATATG+TGG | - | chr6_4:2362191-2362210 | Msa0970720:intron | 20.0% |
!! | GTATGAGAAAAAAAATATGT+GGG | - | chr6_4:2362192-2362211 | Msa0970720:intron | 20.0% |
! | AATTTGAAAACCAGATTCAA+TGG | + | chr6_4:2360778-2360797 | None:intergenic | 25.0% |
!!! | TCTGGTTTTCAAATTTGATA+CGG | - | chr6_4:2360783-2360802 | Msa0970720:intron | 25.0% |
!!! | TTAAAATGGATTAACCTTAC+TGG | - | chr6_4:2360831-2360850 | Msa0970720:intron | 25.0% |
! | TGATATAATGAAGTTTGACA+TGG | - | chr6_4:2361049-2361068 | Msa0970720:CDS | 25.0% |
!!! | CAATTTTTAAGTGCTATGAA+AGG | - | chr6_4:2361911-2361930 | Msa0970720:intron | 25.0% |
!!! | TCTAACTTATTTTCGTTTCA+GGG | - | chr6_4:2362351-2362370 | Msa0970720:intron | 25.0% |
!! | ACATAAAATGTTCTTGTTTG+AGG | - | chr6_4:2362623-2362642 | Msa0970720:CDS | 25.0% |
! | AAGAAAAATGTTGAATCTTC+TGG | - | chr6_4:2362934-2362953 | Msa0970720:CDS | 25.0% |
!! | ACTATCATGTCTTTTATTGT+AGG | - | chr6_4:2363324-2363343 | Msa0970720:CDS | 25.0% |
!! | TGTCTTTTATTGTAGGATAT+TGG | - | chr6_4:2363331-2363350 | Msa0970720:CDS | 25.0% |
!! | TCTATTGAAGATGGATTAGA+TGG | - | chr6_4:2360990-2361009 | Msa0970720:CDS | 30.0% |
AGCAATTGTGTTTAACGATA+TGG | - | chr6_4:2361025-2361044 | Msa0970720:CDS | 30.0% | |
GCAATTGTGTTTAACGATAT+GGG | - | chr6_4:2361026-2361045 | Msa0970720:CDS | 30.0% | |
!!! | AAGTTTTGCATTGATGATGT+TGG | - | chr6_4:2361074-2361093 | Msa0970720:CDS | 30.0% |
! | AAGGTATGATTTTGCTAGTT+TGG | - | chr6_4:2361097-2361116 | Msa0970720:CDS | 30.0% |
AAACCAACAATAAAACAGGT+AGG | + | chr6_4:2361129-2361148 | None:intergenic | 30.0% | |
TAGCAAACCAACAATAAAAC+AGG | + | chr6_4:2361133-2361152 | None:intergenic | 30.0% | |
! | ACGTTTTTATGTTCATGTGA+AGG | - | chr6_4:2361221-2361240 | Msa0970720:CDS | 30.0% |
! | CGTTTTTATGTTCATGTGAA+GGG | - | chr6_4:2361222-2361241 | Msa0970720:CDS | 30.0% |
TGATCATAACCATGATATGT+TGG | - | chr6_4:2361382-2361401 | Msa0970720:intron | 30.0% | |
GATCATAACCATGATATGTT+GGG | - | chr6_4:2361383-2361402 | Msa0970720:intron | 30.0% | |
ATAAGACCATACCAAATGTA+CGG | - | chr6_4:2361491-2361510 | Msa0970720:intron | 30.0% | |
!!! | CAAGGTTGGTTTTGTTAAAA+AGG | - | chr6_4:2361544-2361563 | Msa0970720:intron | 30.0% |
AAGGATTTGTATAACCAAGT+TGG | - | chr6_4:2361563-2361582 | Msa0970720:intron | 30.0% | |
ACACCAGAGAAAATAACAAA+CGG | + | chr6_4:2361809-2361828 | None:intergenic | 30.0% | |
TTTAGGGAAAACTCTCTTAA+TGG | + | chr6_4:2361987-2362006 | None:intergenic | 30.0% | |
!! | TAAGTGCTTTTGAAGAGTTA+TGG | - | chr6_4:2362116-2362135 | Msa0970720:intron | 30.0% |
!! | AAGTGCTTTTGAAGAGTTAT+GGG | - | chr6_4:2362117-2362136 | Msa0970720:intron | 30.0% |
TTGGTTTAGAAGAAAACAAC+TGG | - | chr6_4:2362158-2362177 | Msa0970720:intron | 30.0% | |
GAAAATAAGTTAGACACATG+TGG | + | chr6_4:2362345-2362364 | None:intergenic | 30.0% | |
!! | GTCTAACTTATTTTCGTTTC+AGG | - | chr6_4:2362350-2362369 | Msa0970720:intron | 30.0% |
TCTGATTTCCAATCTAACTA+TGG | - | chr6_4:2362382-2362401 | Msa0970720:intron | 30.0% | |
!! | AGGAGATCTTTTTCTTGTTT+AGG | - | chr6_4:2362467-2362486 | Msa0970720:intron | 30.0% |
!! | GATCTTTTTCTTGTTTAGGT+CGG | - | chr6_4:2362471-2362490 | Msa0970720:intron | 30.0% |
!! | TAAAGAAAGCATTGCTTATC+AGG | - | chr6_4:2362497-2362516 | Msa0970720:CDS | 30.0% |
GATAAACGATTGTCAAGAAA+TGG | - | chr6_4:2362519-2362538 | Msa0970720:CDS | 30.0% | |
! | CAAGAACATTTTATGTCAAC+CGG | + | chr6_4:2362619-2362638 | None:intergenic | 30.0% |
! | AAAATGTTCTTGTTTGAGGA+TGG | - | chr6_4:2362627-2362646 | Msa0970720:CDS | 30.0% |
ATTGCCATGTGATCATATAA+TGG | - | chr6_4:2362660-2362679 | Msa0970720:CDS | 30.0% | |
! | ATTTTGTTGAAAGCTTGAGT+GGG | - | chr6_4:2362890-2362909 | Msa0970720:CDS | 30.0% |
TGTAGTAATTGTGGTGTAAT+AGG | - | chr6_4:2363081-2363100 | Msa0970720:CDS | 30.0% | |
GGAAGATTTAAATTTAGCTG+TGG | + | chr6_4:2363126-2363145 | None:intergenic | 30.0% | |
CAGCTAAATTTAAATCTTCC+TGG | - | chr6_4:2363126-2363145 | Msa0970720:CDS | 30.0% | |
AAACTCACAAGTATCTTTGC+CGG | - | chr6_4:2360944-2360963 | Msa0970720:CDS | 35.0% | |
GAGGCAAATTCTATTGAAGA+TGG | - | chr6_4:2360981-2361000 | Msa0970720:CDS | 35.0% | |
!! | TTTGCATTGATGATGTTGGA+AGG | - | chr6_4:2361078-2361097 | Msa0970720:CDS | 35.0% |
!! | TTGCCTACCTGTTTTATTGT+TGG | - | chr6_4:2361123-2361142 | Msa0970720:CDS | 35.0% |
TACGTAAGGGTCAAATGATT+AGG | - | chr6_4:2361171-2361190 | Msa0970720:CDS | 35.0% | |
ACGTAAGGGTCAAATGATTA+GGG | - | chr6_4:2361172-2361191 | Msa0970720:CDS | 35.0% | |
TAGACATTGTTACAAAGCGT+TGG | - | chr6_4:2361339-2361358 | Msa0970720:intron | 35.0% | |
ATAACCATGATATGTTGGGT+GGG | - | chr6_4:2361387-2361406 | Msa0970720:intron | 35.0% | |
GTTTACGTTGTTTACCAACT+TGG | + | chr6_4:2361580-2361599 | None:intergenic | 35.0% | |
!!! | CAACTTTTTTCTGATGCAAG+TGG | - | chr6_4:2361599-2361618 | Msa0970720:intron | 35.0% |
ACACCATTGGTAAGGATAAA+AGG | - | chr6_4:2361678-2361697 | Msa0970720:intron | 35.0% | |
! | AAGCCTTTTATCCTTACCAA+TGG | + | chr6_4:2361684-2361703 | None:intergenic | 35.0% |
! | AAAGGCTTGAGAGATTGTTT+TGG | - | chr6_4:2361696-2361715 | Msa0970720:intron | 35.0% |
!!! | AGAGATTGTTTTGGAGTGAT+GGG | - | chr6_4:2361705-2361724 | Msa0970720:intron | 35.0% |
CGAATGAACTACGAGATATT+CGG | - | chr6_4:2361734-2361753 | Msa0970720:intron | 35.0% | |
!! | GACAGTTGTACTTGTTTTTC+CGG | + | chr6_4:2361787-2361806 | None:intergenic | 35.0% |
!!! | TGTCCGTTTGTTATTTTCTC+TGG | - | chr6_4:2361803-2361822 | Msa0970720:intron | 35.0% |
ATAACCAGACGATTGTGTTT+GGG | - | chr6_4:2361837-2361856 | Msa0970720:intron | 35.0% | |
AACATCTGCAATCCCAATAT+TGG | + | chr6_4:2362056-2362075 | None:intergenic | 35.0% | |
!! | CTTCAAAAGCACTTACATCA+AGG | + | chr6_4:2362111-2362130 | None:intergenic | 35.0% |
AATGCACAAAATTTCCCATG+TGG | + | chr6_4:2362288-2362307 | None:intergenic | 35.0% | |
ATTGTCAAGAAATGGCTACA+GGG | - | chr6_4:2362527-2362546 | Msa0970720:CDS | 35.0% | |
ACTGCCATTATATGATCACA+TGG | + | chr6_4:2362667-2362686 | None:intergenic | 35.0% | |
CTAGGCAAAACCAAACAATT+GGG | + | chr6_4:2362718-2362737 | None:intergenic | 35.0% | |
TCTAGGCAAAACCAAACAAT+TGG | + | chr6_4:2362719-2362738 | None:intergenic | 35.0% | |
!!! | ATTGTTTGGTTTTGCCTAGA+TGG | - | chr6_4:2362719-2362738 | Msa0970720:CDS | 35.0% |
TTTGCAAATTTCGACCATCT+AGG | + | chr6_4:2362736-2362755 | None:intergenic | 35.0% | |
!! | ATTCGTGAGAAGTATTCAAG+TGG | - | chr6_4:2362763-2362782 | Msa0970720:CDS | 35.0% |
ATTCAAGTGGTTCTTTGTAC+TGG | - | chr6_4:2362776-2362795 | Msa0970720:CDS | 35.0% | |
TTCAAGTGGTTCTTTGTACT+GGG | - | chr6_4:2362777-2362796 | Msa0970720:CDS | 35.0% | |
! | GATTTTGTTGAAAGCTTGAG+TGG | - | chr6_4:2362889-2362908 | Msa0970720:CDS | 35.0% |
! | TTTTGTTGAAAGCTTGAGTG+GGG | - | chr6_4:2362891-2362910 | Msa0970720:CDS | 35.0% |
! | ATTATCTCCAGTTTTGCCTA+CGG | - | chr6_4:2362957-2362976 | Msa0970720:CDS | 35.0% |
ACGCAAACTTGTAGTAATTG+TGG | - | chr6_4:2363072-2363091 | Msa0970720:CDS | 35.0% | |
TTCAAATTCGTCTTCACCAT+TGG | + | chr6_4:2363169-2363188 | None:intergenic | 35.0% | |
!!! | GATCGTTTGTTTTTGGATGC+AGG | - | chr6_4:2360722-2360741 | Msa0970720:intron | 40.0% |
!!! | TTTGTTTTTGGATGCAGGAC+TGG | - | chr6_4:2360727-2360746 | Msa0970720:intron | 40.0% |
!!! | TTGTTTTTGGATGCAGGACT+GGG | - | chr6_4:2360728-2360747 | Msa0970720:intron | 40.0% |
GCATCTACAACCATTGAATC+TGG | - | chr6_4:2360765-2360784 | Msa0970720:intron | 40.0% | |
GTAACATTATGCGACCAGTA+AGG | + | chr6_4:2360848-2360867 | None:intergenic | 40.0% | |
TACTGGTCGCATAATGTTAC+AGG | - | chr6_4:2360848-2360867 | Msa0970720:CDS | 40.0% | |
!! | GAAGATGGATTAGATGGTTC+AGG | - | chr6_4:2360996-2361015 | Msa0970720:CDS | 40.0% |
!! | TGTTGGTTTGCTAGAATGTC+CGG | - | chr6_4:2361140-2361159 | Msa0970720:CDS | 40.0% |
AGGGTCAAATGATTAGGGAT+CGG | - | chr6_4:2361177-2361196 | Msa0970720:CDS | 40.0% | |
TTCATGTGAAGGGTTTAGAG+AGG | - | chr6_4:2361232-2361251 | Msa0970720:intron | 40.0% | |
TGAAGGGTTTAGAGAGGATA+GGG | - | chr6_4:2361238-2361257 | Msa0970720:intron | 40.0% | |
CGAAACAAGATGTGGATGTA+AGG | - | chr6_4:2361298-2361317 | Msa0970720:intron | 40.0% | |
CATAACCATGATATGTTGGG+TGG | - | chr6_4:2361386-2361405 | Msa0970720:intron | 40.0% | |
TCACTCATCTTTCTGTATGC+AGG | + | chr6_4:2361431-2361450 | None:intergenic | 40.0% | |
GCATACAGAAAGATGAGTGA+AGG | - | chr6_4:2361431-2361450 | Msa0970720:intron | 40.0% | |
GATGAGTGAAGGTGATATTG+AGG | - | chr6_4:2361442-2361461 | Msa0970720:intron | 40.0% | |
ATTGAACGCAGTAGAAAAGC+AGG | - | chr6_4:2361467-2361486 | Msa0970720:intron | 40.0% | |
TTGAACGCAGTAGAAAAGCA+GGG | - | chr6_4:2361468-2361487 | Msa0970720:intron | 40.0% | |
ATGGTACCGTACATTTGGTA+TGG | + | chr6_4:2361500-2361519 | None:intergenic | 40.0% | |
ATACCAAATGTACGGTACCA+TGG | - | chr6_4:2361499-2361518 | Msa0970720:intron | 40.0% | |
! | TTTTTCTGATGCAAGTGGTG+CGG | - | chr6_4:2361604-2361623 | Msa0970720:intron | 40.0% |
TGTGTGTCACAAACATAAGC+GGG | + | chr6_4:2361661-2361680 | None:intergenic | 40.0% | |
GTGTGTGTCACAAACATAAG+CGG | + | chr6_4:2361662-2361681 | None:intergenic | 40.0% | |
ATGTTTGTGACACACACCAT+TGG | - | chr6_4:2361665-2361684 | Msa0970720:intron | 40.0% | |
!!! | GAGAGATTGTTTTGGAGTGA+TGG | - | chr6_4:2361704-2361723 | Msa0970720:intron | 40.0% |
!!! | GAGATTGTTTTGGAGTGATG+GGG | - | chr6_4:2361706-2361725 | Msa0970720:intron | 40.0% |
!! | TTGCTTTTGATGCAACCTAC+CGG | - | chr6_4:2361765-2361784 | Msa0970720:intron | 40.0% |
!! | GTTGTACTTGTTTTTCCGGT+AGG | + | chr6_4:2361783-2361802 | None:intergenic | 40.0% |
ACACAATCGTCTGGTTATGA+TGG | + | chr6_4:2361835-2361854 | None:intergenic | 40.0% | |
CATAACCAGACGATTGTGTT+TGG | - | chr6_4:2361836-2361855 | Msa0970720:intron | 40.0% | |
! | AGGCATTGTAACACGAGAAA+CGG | - | chr6_4:2361862-2361881 | Msa0970720:intron | 40.0% |
AGTGTCTCCATCGGTAATTA+CGG | + | chr6_4:2361951-2361970 | None:intergenic | 40.0% | |
! | AGAAACGCATCGACCAATAT+TGG | - | chr6_4:2362040-2362059 | Msa0970720:intron | 40.0% |
! | GAAACGCATCGACCAATATT+GGG | - | chr6_4:2362041-2362060 | Msa0970720:intron | 40.0% |
! | TGAAGAGTTATGGGCTGAAA+TGG | - | chr6_4:2362126-2362145 | Msa0970720:intron | 40.0% |
GCTGAAATGGTTCAGAAGTT+TGG | - | chr6_4:2362139-2362158 | Msa0970720:intron | 40.0% | |
ATAAGGGGAAGTTTCTTTGC+TGG | - | chr6_4:2362226-2362245 | Msa0970720:intron | 40.0% | |
! | CAGGTTGACCATAGTTAGAT+TGG | + | chr6_4:2362393-2362412 | None:intergenic | 40.0% |
TTTCTCGATAGAACGTAGAC+TGG | + | chr6_4:2362425-2362444 | None:intergenic | 40.0% | |
AGCTGCAAAGTTGTTTACGA+AGG | - | chr6_4:2362447-2362466 | Msa0970720:intron | 40.0% | |
GATTGTCAAGAAATGGCTAC+AGG | - | chr6_4:2362526-2362545 | Msa0970720:CDS | 40.0% | |
!! | GTTTCAAAGTACCGTCTTGA+TGG | - | chr6_4:2362562-2362581 | Msa0970720:CDS | 40.0% |
! | TGTTTCCTTTTGCGAAGAAC+CGG | - | chr6_4:2362597-2362616 | Msa0970720:CDS | 40.0% |
CAATCTGCAGCAAGATATTC+TGG | - | chr6_4:2362805-2362824 | Msa0970720:CDS | 40.0% | |
TCATTTACCGTAGGCAAAAC+TGG | + | chr6_4:2362967-2362986 | None:intergenic | 40.0% | |
! | AGTTTTGCCTACGGTAAATG+AGG | - | chr6_4:2362966-2362985 | Msa0970720:CDS | 40.0% |
TTCTAACAACCTCAGGATCA+AGG | + | chr6_4:2363002-2363021 | None:intergenic | 40.0% | |
GTTGTTAGAACGAAAGGATG+TGG | - | chr6_4:2363012-2363031 | Msa0970720:CDS | 40.0% | |
AGGATGTGGTTCAATTGCTA+CGG | - | chr6_4:2363026-2363045 | Msa0970720:CDS | 40.0% | |
CATACACTTAATCCTGCCAA+TGG | - | chr6_4:2363150-2363169 | Msa0970720:CDS | 40.0% | |
CTACTATAGTCAGACTCAGA+CGG | - | chr6_4:2363209-2363228 | Msa0970720:intron | 40.0% | |
TTGTAGGATATTGGCACACA+AGG | - | chr6_4:2363340-2363359 | Msa0970720:CDS | 40.0% | |
!! | GGGTGGAGATCGTTTGTTTT+TGG | - | chr6_4:2360715-2360734 | Msa0970720:intron | 45.0% |
GACACGACAGAAGAAAGTGA+TGG | - | chr6_4:2360870-2360889 | Msa0970720:CDS | 45.0% | |
!! | GATGGATTAGATGGTTCAGG+TGG | - | chr6_4:2360999-2361018 | Msa0970720:CDS | 45.0% |
!! | GTTGGTTTGCTAGAATGTCC+GGG | - | chr6_4:2361141-2361160 | Msa0970720:CDS | 45.0% |
GGGTCAAATGATTAGGGATC+GGG | - | chr6_4:2361178-2361197 | Msa0970720:CDS | 45.0% | |
CAAATGATTAGGGATCGGGA+AGG | - | chr6_4:2361182-2361201 | Msa0970720:CDS | 45.0% | |
GTGAAGGGTTTAGAGAGGAT+AGG | - | chr6_4:2361237-2361256 | Msa0970720:intron | 45.0% | |
GAAGGGTTTAGAGAGGATAG+GGG | - | chr6_4:2361239-2361258 | Msa0970720:intron | 45.0% | |
AAGGGTTTAGAGAGGATAGG+GGG | - | chr6_4:2361240-2361259 | Msa0970720:intron | 45.0% | |
AGAGGATAGGGGGTTAACAA+GGG | - | chr6_4:2361250-2361269 | Msa0970720:intron | 45.0% | |
AAGTCCCACCCAACATATCA+TGG | + | chr6_4:2361394-2361413 | None:intergenic | 45.0% | |
ACCAACCTTGTGAAAACCAC+CGG | + | chr6_4:2361534-2361553 | None:intergenic | 45.0% | |
TGTGACACACACCATTGGTA+AGG | - | chr6_4:2361670-2361689 | Msa0970720:intron | 45.0% | |
AAACGGAAGAGACTTACGTC+TGG | - | chr6_4:2361879-2361898 | Msa0970720:intron | 45.0% | |
AGAGACTTACGTCTGGTTGT+TGG | - | chr6_4:2361886-2361905 | Msa0970720:intron | 45.0% | |
CCATCGGTAATTACGGATAC+CGG | + | chr6_4:2361944-2361963 | None:intergenic | 45.0% | |
TCTCATTGCAGTGTCTCCAT+CGG | + | chr6_4:2361960-2361979 | None:intergenic | 45.0% | |
!! | ATAGTCGGTGATGGGCTTTA+GGG | + | chr6_4:2362003-2362022 | None:intergenic | 45.0% |
CAAAATTTCCCATGTGGCTG+TGG | + | chr6_4:2362282-2362301 | None:intergenic | 45.0% | |
!! | CGTAGACTGGTTTGTAACAC+AGG | + | chr6_4:2362412-2362431 | None:intergenic | 45.0% |
TGTTTGAGGATGGAGTCACT+CGG | - | chr6_4:2362637-2362656 | Msa0970720:CDS | 45.0% | |
CGATGAGCTTCCCAATTGTT+TGG | - | chr6_4:2362705-2362724 | Msa0970720:CDS | 45.0% | |
CAGCAACTTCTTTGCACAAC+TGG | + | chr6_4:2362837-2362856 | None:intergenic | 45.0% | |
CAGTTGTGCAAAGAAGTTGC+TGG | - | chr6_4:2362835-2362854 | Msa0970720:CDS | 45.0% | |
TCGTCTTCCTCATTTACCGT+AGG | + | chr6_4:2362976-2362995 | None:intergenic | 45.0% | |
CCTTTCGTTCTAACAACCTC+AGG | + | chr6_4:2363009-2363028 | None:intergenic | 45.0% | |
CCTGAGGTTGTTAGAACGAA+AGG | - | chr6_4:2363006-2363025 | Msa0970720:CDS | 45.0% | |
GGATGTGGTTCAATTGCTAC+GGG | - | chr6_4:2363027-2363046 | Msa0970720:CDS | 45.0% | |
GTGGACAACATCGTCTATTG+TGG | + | chr6_4:2363107-2363126 | None:intergenic | 45.0% | |
GCAGGATTAAGTGTATGACC+AGG | + | chr6_4:2363147-2363166 | None:intergenic | 45.0% | |
AATTCGTCTTCACCATTGGC+AGG | + | chr6_4:2363165-2363184 | None:intergenic | 45.0% | |
! | ATGGATTGTAGACCAGAGGG+TGG | - | chr6_4:2360698-2360717 | Msa0970720:CDS | 50.0% |
AACAAACGATCTCCACCCTC+TGG | + | chr6_4:2360713-2360732 | None:intergenic | 50.0% | |
GATGGTAGCAACACGTCAAG+CGG | - | chr6_4:2360888-2360907 | Msa0970720:CDS | 50.0% | |
GCCTCTTCTTCAGATTCGAC+CGG | + | chr6_4:2360966-2360985 | None:intergenic | 50.0% | |
TCCGGGTTCTCTGTACGTAA+GGG | - | chr6_4:2361158-2361177 | Msa0970720:CDS | 50.0% | |
ACCCTTACGTACAGAGAACC+CGG | + | chr6_4:2361162-2361181 | None:intergenic | 50.0% | |
GAGAGGATAGGGGGTTAACA+AGG | - | chr6_4:2361249-2361268 | Msa0970720:intron | 50.0% | |
GGTTAACAAGGGAGAACCGA+AGG | - | chr6_4:2361261-2361280 | Msa0970720:intron | 50.0% | |
! | CCACATCTTGTTTCGTTGCG+TGG | + | chr6_4:2361293-2361312 | None:intergenic | 50.0% |
CCACGCAACGAAACAAGATG+TGG | - | chr6_4:2361290-2361309 | Msa0970720:intron | 50.0% | |
ATGTTGGGTGGGACTTTGTG+TGG | - | chr6_4:2361398-2361417 | Msa0970720:intron | 50.0% | |
TGGCCATGGTACCGTACATT+TGG | + | chr6_4:2361505-2361524 | None:intergenic | 50.0% | |
GTGAAAACCACCGGATGCAT+TGG | + | chr6_4:2361525-2361544 | None:intergenic | 50.0% | |
! | TGCATCCGGTGGTTTTCACA+AGG | - | chr6_4:2361526-2361545 | Msa0970720:intron | 50.0% |
! | TCCGGTGGTTTTCACAAGGT+TGG | - | chr6_4:2361530-2361549 | Msa0970720:intron | 50.0% |
CTGTCCCAAACACAATCGTC+TGG | + | chr6_4:2361844-2361863 | None:intergenic | 50.0% | |
! | CAGACGATTGTGTTTGGGAC+AGG | - | chr6_4:2361842-2361861 | Msa0970720:intron | 50.0% |
TGCTATGAAAGGGAAGCAGC+CGG | - | chr6_4:2361922-2361941 | Msa0970720:intron | 50.0% | |
CCGGTATCCGTAATTACCGA+TGG | - | chr6_4:2361941-2361960 | Msa0970720:intron | 50.0% | |
!! | CATAGTCGGTGATGGGCTTT+AGG | + | chr6_4:2362004-2362023 | None:intergenic | 50.0% |
TGGTCGATGCGTTTCTCAAC+AGG | + | chr6_4:2362036-2362055 | None:intergenic | 50.0% | |
ACTTCCCCTTATGTGAGCAG+TGG | + | chr6_4:2362218-2362237 | None:intergenic | 50.0% | |
! | ACCGTCTTGATGGCAGTGAA+TGG | - | chr6_4:2362572-2362591 | Msa0970720:CDS | 50.0% |
GCCATTCACTGCCATCAAGA+CGG | + | chr6_4:2362576-2362595 | None:intergenic | 50.0% | |
! | GTCAACCGGTTCTTCGCAAA+AGG | + | chr6_4:2362605-2362624 | None:intergenic | 50.0% |
AGACGAACTCCTTGATCCTG+AGG | - | chr6_4:2362990-2363009 | Msa0970720:CDS | 50.0% | |
TCAATTGCTACGGGTACTCC+AGG | - | chr6_4:2363036-2363055 | Msa0970720:CDS | 50.0% | |
GCCGGTCGAATCTGAAGAAG+AGG | - | chr6_4:2360962-2360981 | Msa0970720:CDS | 55.0% | |
GTCCGGGTTCTCTGTACGTA+AGG | - | chr6_4:2361157-2361176 | Msa0970720:CDS | 55.0% | |
GGTACCATGGCCAATGCATC+CGG | - | chr6_4:2361512-2361531 | Msa0970720:intron | 55.0% | |
CCACGCACATAGTCGGTGAT+GGG | + | chr6_4:2362011-2362030 | None:intergenic | 55.0% | |
! | ACAGGTGCCACGCACATAGT+CGG | + | chr6_4:2362018-2362037 | None:intergenic | 55.0% |
TGTGGGCCACTGCTCACATA+AGG | - | chr6_4:2362209-2362228 | Msa0970720:intron | 55.0% | |
GTGGGCCACTGCTCACATAA+GGG | - | chr6_4:2362210-2362229 | Msa0970720:intron | 55.0% | |
TGGGCCACTGCTCACATAAG+GGG | - | chr6_4:2362211-2362230 | Msa0970720:intron | 55.0% | |
TCGAACTACGTCTCGTTGCG+AGG | - | chr6_4:2362252-2362271 | Msa0970720:intron | 55.0% | |
GGTAGCAACACGTCAAGCGG+TGG | - | chr6_4:2360891-2360910 | Msa0970720:CDS | 60.0% | |
ACCATGGCCAATGCATCCGG+TGG | - | chr6_4:2361515-2361534 | Msa0970720:intron | 60.0% | |
! | ACCACCGGATGCATTGGCCA+TGG | + | chr6_4:2361519-2361538 | None:intergenic | 60.0% |
! | CCCATCACCGACTATGTGCG+TGG | - | chr6_4:2362008-2362027 | Msa0970720:intron | 60.0% |
GCCACGCACATAGTCGGTGA+TGG | + | chr6_4:2362012-2362031 | None:intergenic | 60.0% | |
TTGCTACGGGTACTCCAGGC+AGG | - | chr6_4:2363040-2363059 | Msa0970720:CDS | 60.0% | |
CGTTGCGTGGCTCACGCCTT+CGG | + | chr6_4:2361280-2361299 | None:intergenic | 65.0% | |
! | GAGGCGCTCCACAGCCACAT+GGG | - | chr6_4:2362271-2362290 | Msa0970720:intron | 65.0% |
! | CGAGGCGCTCCACAGCCACA+TGG | - | chr6_4:2362270-2362289 | Msa0970720:intron | 70.0% |
TGCGTGCGTTTGCGCCTGCC+TGG | + | chr6_4:2363057-2363076 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 2360698 | 2363366 | 2360698 | ID=Msa0970720;Name=Msa0970720 |
chr6_4 | mRNA | 2360698 | 2363366 | 2360698 | ID=Msa0970720-mRNA-1;Parent=Msa0970720;Name=Msa0970720-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|0.25|1|1|4|0|404 |
chr6_4 | exon | 2363304 | 2363366 | 2363304 | ID=Msa0970720-mRNA-1:exon:1144;Parent=Msa0970720-mRNA-1 |
chr6_4 | exon | 2362480 | 2363194 | 2362480 | ID=Msa0970720-mRNA-1:exon:1143;Parent=Msa0970720-mRNA-1 |
chr6_4 | exon | 2360834 | 2361249 | 2360834 | ID=Msa0970720-mRNA-1:exon:1142;Parent=Msa0970720-mRNA-1 |
chr6_4 | exon | 2360698 | 2360718 | 2360698 | ID=Msa0970720-mRNA-1:exon:1141;Parent=Msa0970720-mRNA-1 |
chr6_4 | CDS | 2363304 | 2363366 | 2363304 | ID=Msa0970720-mRNA-1:cds;Parent=Msa0970720-mRNA-1 |
chr6_4 | CDS | 2362480 | 2363194 | 2362480 | ID=Msa0970720-mRNA-1:cds;Parent=Msa0970720-mRNA-1 |
chr6_4 | CDS | 2360834 | 2361249 | 2360834 | ID=Msa0970720-mRNA-1:cds;Parent=Msa0970720-mRNA-1 |
chr6_4 | CDS | 2360698 | 2360718 | 2360698 | ID=Msa0970720-mRNA-1:cds;Parent=Msa0970720-mRNA-1 |
Gene Sequence |
Protein sequence |