AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0970720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970720 MtrunA17_Chr1g0203051 34.553 246 155 2 13 258 3 242 1.12e-46 169
Msa0970720 MtrunA17_Chr1g0171741 40.741 162 94 2 64 225 103 262 7.34e-33 124
Msa0970720 MtrunA17_Chr2g0287651 34.715 193 125 1 94 285 74 266 7.96e-33 130
Msa0970720 MtrunA17_Chr8g0389811 35.821 134 86 0 73 206 62 195 1.51e-27 108
Msa0970720 MtrunA17_Chr2g0331371 37.576 165 99 2 45 206 3 166 4.24e-27 107
Msa0970720 MtrunA17_Chr6g0473421 38.760 129 75 2 45 170 3 130 7.57e-22 91.3
Msa0970720 MtrunA17_Chr1g0172931 39.655 116 66 2 63 177 46 158 6.29e-20 86.3
Msa0970720 MtrunA17_Chr5g0448761 34.568 162 100 3 100 257 65 224 4.17e-16 80.5
Msa0970720 MtrunA17_Chr1g0198761 31.220 205 112 8 93 272 42 242 6.30e-16 79.7
Msa0970720 MtrunA17_Chr2g0290391 33.333 171 108 4 101 267 57 225 1.10e-15 79.0
Msa0970720 MtrunA17_Chr5g0431001 30.208 192 112 6 101 272 67 256 5.36e-15 76.6
Msa0970720 MtrunA17_Chr2g0276841 33.566 143 88 4 101 238 76 216 3.30e-14 74.7
Msa0970720 MtrunA17_Chr2g0277171 56.250 80 34 1 1 80 1 79 2.15e-12 62.4
Msa0970720 MtrunA17_Chr1g0202341 28.395 162 111 3 100 260 56 213 3.91e-12 68.2
Msa0970720 MtrunA17_Chr2g0294841 32.022 178 102 7 101 265 51 222 4.83e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970720 AT5G28530.5 33.529 170 109 3 101 267 61 229 4.60e-18 86.7
Msa0970720 AT5G28530.4 33.529 170 109 3 101 267 61 229 4.80e-18 86.7
Msa0970720 AT5G28530.3 33.951 162 103 3 101 259 61 221 5.42e-18 86.7
Msa0970720 AT5G28530.2 33.951 162 103 3 101 259 61 221 5.42e-18 86.7
Msa0970720 AT5G28530.1 33.951 162 103 3 101 259 61 221 5.44e-18 86.7
Msa0970720 AT4G38180.1 35.294 170 100 5 95 257 70 236 5.98e-15 77.4
Msa0970720 AT1G10240.2 30.636 173 108 6 101 265 54 222 6.01e-14 73.9
Msa0970720 AT1G10240.1 30.636 173 108 6 101 265 54 222 6.01e-14 73.9

Find 89 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAATTGTGTTTAACGATA+TGG 0.229082 6_4:-2363017 Msa0970720:CDS
TCTATTGAAGATGGATTAGA+TGG 0.310425 6_4:-2363052 Msa0970720:CDS
CAATCTGCAGCAAGATATTC+TGG 0.314174 6_4:-2361237 Msa0970720:intron
TCATTTACCGTAGGCAAAAC+TGG 0.325615 6_4:+2361078 None:intergenic
TGTAGTAATTGTGGTGTAAT+AGG 0.325728 6_4:-2360961 Msa0970720:CDS
CAGCTAAATTTAAATCTTCC+TGG 0.331544 6_4:-2360916 Msa0970720:CDS
CAGCAACTTCTTTGCACAAC+TGG 0.354915 6_4:+2361208 None:intergenic
TACGTAAGGGTCAAATGATT+AGG 0.360442 6_4:-2362871 Msa0970720:CDS
TGTTGGTTTGCTAGAATGTC+CGG 0.368843 6_4:-2362902 Msa0970720:CDS
GAAGATGGATTAGATGGTTC+AGG 0.371824 6_4:-2363046 Msa0970720:CDS
GCAATTGTGTTTAACGATAT+GGG 0.394378 6_4:-2363016 Msa0970720:CDS
TGGCCATGGTACCGTACATT+TGG 0.419221 6_4:+2362540 None:intergenic
CGTTGCGTGGCTCACGCCTT+CGG 0.424339 6_4:+2362765 None:intergenic
TGAAGGGTTTAGAGAGGATA+GGG 0.425140 6_4:-2362804 Msa0970720:CDS
ACGTAAGGGTCAAATGATTA+GGG 0.438100 6_4:-2362870 Msa0970720:CDS
GTCCGGGTTCTCTGTACGTA+AGG 0.442552 6_4:-2362885 Msa0970720:CDS
TTCAAATTCGTCTTCACCAT+TGG 0.445525 6_4:+2360876 None:intergenic
GAGGCAAATTCTATTGAAGA+TGG 0.447194 6_4:-2363061 Msa0970720:CDS
TAGCAAACCAACAATAAAAC+AGG 0.448653 6_4:+2362912 None:intergenic
TGCGTGCGTTTGCGCCTGCC+TGG 0.457056 6_4:+2360988 None:intergenic
AAACTCACAAGTATCTTTGC+CGG 0.460720 6_4:-2363098 Msa0970720:CDS
AATTCGTCTTCACCATTGGC+AGG 0.467391 6_4:+2360880 None:intergenic
CCACATCTTGTTTCGTTGCG+TGG 0.468890 6_4:+2362752 None:intergenic
GGGTCAAATGATTAGGGATC+GGG 0.473894 6_4:-2362864 Msa0970720:CDS
CGAAACAAGATGTGGATGTA+AGG 0.474068 6_4:-2362744 Msa0970720:CDS
GGTACCATGGCCAATGCATC+CGG 0.478832 6_4:-2362530 Msa0970720:CDS
TCACTCATCTTTCTGTATGC+AGG 0.482247 6_4:+2362614 None:intergenic
CCTTTCGTTCTAACAACCTC+AGG 0.487809 6_4:+2361036 None:intergenic
GTTTACGTTGTTTACCAACT+TGG 0.488147 6_4:+2362465 None:intergenic
ATGTTGGGTGGGACTTTGTG+TGG 0.491891 6_4:-2362644 Msa0970720:CDS
CAGTTGTGCAAAGAAGTTGC+TGG 0.503687 6_4:-2361207 Msa0970720:CDS
TTCTAACAACCTCAGGATCA+AGG 0.512314 6_4:+2361043 None:intergenic
AAGGATTTGTATAACCAAGT+TGG 0.513872 6_4:-2362479 Msa0970720:intron
GCCTCTTCTTCAGATTCGAC+CGG 0.514599 6_4:+2363079 None:intergenic
ATTGAACGCAGTAGAAAAGC+AGG 0.515481 6_4:-2362575 Msa0970720:CDS
GTGAAAACCACCGGATGCAT+TGG 0.516512 6_4:+2362520 None:intergenic
TGATCATAACCATGATATGT+TGG 0.520526 6_4:-2362660 Msa0970720:CDS
TTGCTACGGGTACTCCAGGC+AGG 0.522386 6_4:-2361002 Msa0970720:CDS
AAGTCCCACCCAACATATCA+TGG 0.526054 6_4:+2362651 None:intergenic
CCTGAGGTTGTTAGAACGAA+AGG 0.527309 6_4:-2361036 Msa0970720:CDS
AGGATGTGGTTCAATTGCTA+CGG 0.528366 6_4:-2361016 Msa0970720:CDS
GATGAGTGAAGGTGATATTG+AGG 0.533926 6_4:-2362600 Msa0970720:CDS
TCAATTGCTACGGGTACTCC+AGG 0.535102 6_4:-2361006 Msa0970720:CDS
AACAAACGATCTCCACCCTC+TGG 0.540136 6_4:+2363332 None:intergenic
ATGGTACCGTACATTTGGTA+TGG 0.543018 6_4:+2362545 None:intergenic
ACCAACCTTGTGAAAACCAC+CGG 0.551580 6_4:+2362511 None:intergenic
GATCATAACCATGATATGTT+GGG 0.552642 6_4:-2362659 Msa0970720:CDS
AGGGTCAAATGATTAGGGAT+CGG 0.556672 6_4:-2362865 Msa0970720:CDS
TAGACATTGTTACAAAGCGT+TGG 0.557208 6_4:-2362703 Msa0970720:CDS
GTTGTTAGAACGAAAGGATG+TGG 0.560820 6_4:-2361030 Msa0970720:CDS
GTTGGTTTGCTAGAATGTCC+GGG 0.563741 6_4:-2362901 Msa0970720:CDS
GGATGTGGTTCAATTGCTAC+GGG 0.579078 6_4:-2361015 Msa0970720:CDS
GCCGGTCGAATCTGAAGAAG+AGG 0.579413 6_4:-2363080 Msa0970720:CDS
GGAAGATTTAAATTTAGCTG+TGG 0.581102 6_4:+2360919 None:intergenic
TTGTAGGATATTGGCACACA+AGG 0.581110 6_4:-2360702 Msa0970720:intron
GTGGACAACATCGTCTATTG+TGG 0.581267 6_4:+2360938 None:intergenic
TCGTCTTCCTCATTTACCGT+AGG 0.582575 6_4:+2361069 None:intergenic
GTGAAGGGTTTAGAGAGGAT+AGG 0.583533 6_4:-2362805 Msa0970720:CDS
ACCCTTACGTACAGAGAACC+CGG 0.584162 6_4:+2362883 None:intergenic
TTCATGTGAAGGGTTTAGAG+AGG 0.585894 6_4:-2362810 Msa0970720:CDS
AGTTATGGATTGTAGACCAG+AGG 0.597894 6_4:-2363348 None:intergenic
GAAGGGTTTAGAGAGGATAG+GGG 0.605796 6_4:-2362803 Msa0970720:CDS
GGTTAACAAGGGAGAACCGA+AGG 0.608301 6_4:-2362781 Msa0970720:CDS
ACGCAAACTTGTAGTAATTG+TGG 0.610538 6_4:-2360970 Msa0970720:CDS
AAGGGTTTAGAGAGGATAGG+GGG 0.612598 6_4:-2362802 Msa0970720:CDS
ATAAGACCATACCAAATGTA+CGG 0.618674 6_4:-2362551 Msa0970720:CDS
TCCGGGTTCTCTGTACGTAA+GGG 0.618976 6_4:-2362884 Msa0970720:CDS
CATAACCATGATATGTTGGG+TGG 0.621498 6_4:-2362656 Msa0970720:CDS
ATAACCATGATATGTTGGGT+GGG 0.626489 6_4:-2362655 Msa0970720:CDS
AGACGAACTCCTTGATCCTG+AGG 0.627835 6_4:-2361052 Msa0970720:CDS
ACCACCGGATGCATTGGCCA+TGG 0.631660 6_4:+2362526 None:intergenic
GATGGTAGCAACACGTCAAG+CGG 0.631845 6_4:-2363154 Msa0970720:CDS
CATACACTTAATCCTGCCAA+TGG 0.635369 6_4:-2360892 Msa0970720:CDS
TTTGCATTGATGATGTTGGA+AGG 0.635495 6_4:-2362964 Msa0970720:CDS
ATACCAAATGTACGGTACCA+TGG 0.637363 6_4:-2362543 Msa0970720:CDS
TGATATAATGAAGTTTGACA+TGG 0.637415 6_4:-2362993 Msa0970720:CDS
GTTATGGATTGTAGACCAGA+GGG 0.639635 6_4:-2363347 Msa0970720:CDS
GCATACAGAAAGATGAGTGA+AGG 0.639842 6_4:-2362611 Msa0970720:CDS
AAACCAACAATAAAACAGGT+AGG 0.641669 6_4:+2362916 None:intergenic
ACCATGGCCAATGCATCCGG+TGG 0.644970 6_4:-2362527 Msa0970720:CDS
CTACTATAGTCAGACTCAGA+CGG 0.647730 6_4:-2360833 Msa0970720:intron
CCACGCAACGAAACAAGATG+TGG 0.660406 6_4:-2362752 Msa0970720:CDS
GGTAGCAACACGTCAAGCGG+TGG 0.661636 6_4:-2363151 Msa0970720:CDS
TTGAACGCAGTAGAAAAGCA+GGG 0.669009 6_4:-2362574 Msa0970720:CDS
GATGGATTAGATGGTTCAGG+TGG 0.676772 6_4:-2363043 Msa0970720:CDS
GCAGGATTAAGTGTATGACC+AGG 0.677736 6_4:+2360898 None:intergenic
ATGGATTGTAGACCAGAGGG+TGG 0.690600 6_4:-2363344 Msa0970720:CDS
GACACGACAGAAGAAAGTGA+TGG 0.695407 6_4:-2363172 Msa0970720:CDS
CAAATGATTAGGGATCGGGA+AGG 0.764049 6_4:-2362860 Msa0970720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTATTTTTTAAAA+TGG - chr6_4:2360817-2360836 Msa0970720:intron 0.0%
!!! TTTTCTTTAATTTTAATCTA+TGG + chr6_4:2362921-2362940 None:intergenic 10.0%
!! TTTAAAAAAAATGATGAAAA+AGG + chr6_4:2363243-2363262 None:intergenic 10.0%
!! TTATATTAAAAAATGCATGT+TGG - chr6_4:2362081-2362100 Msa0970720:intron 15.0%
!! TATATTAAAAAATGCATGTT+GGG - chr6_4:2362082-2362101 Msa0970720:intron 15.0%
!! TAAGTGTTATCAAAATTTAA+AGG + chr6_4:2363292-2363311 None:intergenic 15.0%
!!! AATTTTTAAGTGCTATGAAA+GGG - chr6_4:2361912-2361931 Msa0970720:intron 20.0%
!! TGTATGAGAAAAAAAATATG+TGG - chr6_4:2362191-2362210 Msa0970720:intron 20.0%
!! GTATGAGAAAAAAAATATGT+GGG - chr6_4:2362192-2362211 Msa0970720:intron 20.0%
! AATTTGAAAACCAGATTCAA+TGG + chr6_4:2360778-2360797 None:intergenic 25.0%
!!! TCTGGTTTTCAAATTTGATA+CGG - chr6_4:2360783-2360802 Msa0970720:intron 25.0%
!!! TTAAAATGGATTAACCTTAC+TGG - chr6_4:2360831-2360850 Msa0970720:intron 25.0%
! TGATATAATGAAGTTTGACA+TGG - chr6_4:2361049-2361068 Msa0970720:CDS 25.0%
!!! CAATTTTTAAGTGCTATGAA+AGG - chr6_4:2361911-2361930 Msa0970720:intron 25.0%
!!! TCTAACTTATTTTCGTTTCA+GGG - chr6_4:2362351-2362370 Msa0970720:intron 25.0%
!! ACATAAAATGTTCTTGTTTG+AGG - chr6_4:2362623-2362642 Msa0970720:CDS 25.0%
! AAGAAAAATGTTGAATCTTC+TGG - chr6_4:2362934-2362953 Msa0970720:CDS 25.0%
!! ACTATCATGTCTTTTATTGT+AGG - chr6_4:2363324-2363343 Msa0970720:CDS 25.0%
!! TGTCTTTTATTGTAGGATAT+TGG - chr6_4:2363331-2363350 Msa0970720:CDS 25.0%
!! TCTATTGAAGATGGATTAGA+TGG - chr6_4:2360990-2361009 Msa0970720:CDS 30.0%
AGCAATTGTGTTTAACGATA+TGG - chr6_4:2361025-2361044 Msa0970720:CDS 30.0%
GCAATTGTGTTTAACGATAT+GGG - chr6_4:2361026-2361045 Msa0970720:CDS 30.0%
!!! AAGTTTTGCATTGATGATGT+TGG - chr6_4:2361074-2361093 Msa0970720:CDS 30.0%
! AAGGTATGATTTTGCTAGTT+TGG - chr6_4:2361097-2361116 Msa0970720:CDS 30.0%
AAACCAACAATAAAACAGGT+AGG + chr6_4:2361129-2361148 None:intergenic 30.0%
TAGCAAACCAACAATAAAAC+AGG + chr6_4:2361133-2361152 None:intergenic 30.0%
! ACGTTTTTATGTTCATGTGA+AGG - chr6_4:2361221-2361240 Msa0970720:CDS 30.0%
! CGTTTTTATGTTCATGTGAA+GGG - chr6_4:2361222-2361241 Msa0970720:CDS 30.0%
TGATCATAACCATGATATGT+TGG - chr6_4:2361382-2361401 Msa0970720:intron 30.0%
GATCATAACCATGATATGTT+GGG - chr6_4:2361383-2361402 Msa0970720:intron 30.0%
ATAAGACCATACCAAATGTA+CGG - chr6_4:2361491-2361510 Msa0970720:intron 30.0%
!!! CAAGGTTGGTTTTGTTAAAA+AGG - chr6_4:2361544-2361563 Msa0970720:intron 30.0%
AAGGATTTGTATAACCAAGT+TGG - chr6_4:2361563-2361582 Msa0970720:intron 30.0%
ACACCAGAGAAAATAACAAA+CGG + chr6_4:2361809-2361828 None:intergenic 30.0%
TTTAGGGAAAACTCTCTTAA+TGG + chr6_4:2361987-2362006 None:intergenic 30.0%
!! TAAGTGCTTTTGAAGAGTTA+TGG - chr6_4:2362116-2362135 Msa0970720:intron 30.0%
!! AAGTGCTTTTGAAGAGTTAT+GGG - chr6_4:2362117-2362136 Msa0970720:intron 30.0%
TTGGTTTAGAAGAAAACAAC+TGG - chr6_4:2362158-2362177 Msa0970720:intron 30.0%
GAAAATAAGTTAGACACATG+TGG + chr6_4:2362345-2362364 None:intergenic 30.0%
!! GTCTAACTTATTTTCGTTTC+AGG - chr6_4:2362350-2362369 Msa0970720:intron 30.0%
TCTGATTTCCAATCTAACTA+TGG - chr6_4:2362382-2362401 Msa0970720:intron 30.0%
!! AGGAGATCTTTTTCTTGTTT+AGG - chr6_4:2362467-2362486 Msa0970720:intron 30.0%
!! GATCTTTTTCTTGTTTAGGT+CGG - chr6_4:2362471-2362490 Msa0970720:intron 30.0%
!! TAAAGAAAGCATTGCTTATC+AGG - chr6_4:2362497-2362516 Msa0970720:CDS 30.0%
GATAAACGATTGTCAAGAAA+TGG - chr6_4:2362519-2362538 Msa0970720:CDS 30.0%
! CAAGAACATTTTATGTCAAC+CGG + chr6_4:2362619-2362638 None:intergenic 30.0%
! AAAATGTTCTTGTTTGAGGA+TGG - chr6_4:2362627-2362646 Msa0970720:CDS 30.0%
ATTGCCATGTGATCATATAA+TGG - chr6_4:2362660-2362679 Msa0970720:CDS 30.0%
! ATTTTGTTGAAAGCTTGAGT+GGG - chr6_4:2362890-2362909 Msa0970720:CDS 30.0%
TGTAGTAATTGTGGTGTAAT+AGG - chr6_4:2363081-2363100 Msa0970720:CDS 30.0%
GGAAGATTTAAATTTAGCTG+TGG + chr6_4:2363126-2363145 None:intergenic 30.0%
CAGCTAAATTTAAATCTTCC+TGG - chr6_4:2363126-2363145 Msa0970720:CDS 30.0%
AAACTCACAAGTATCTTTGC+CGG - chr6_4:2360944-2360963 Msa0970720:CDS 35.0%
GAGGCAAATTCTATTGAAGA+TGG - chr6_4:2360981-2361000 Msa0970720:CDS 35.0%
!! TTTGCATTGATGATGTTGGA+AGG - chr6_4:2361078-2361097 Msa0970720:CDS 35.0%
!! TTGCCTACCTGTTTTATTGT+TGG - chr6_4:2361123-2361142 Msa0970720:CDS 35.0%
TACGTAAGGGTCAAATGATT+AGG - chr6_4:2361171-2361190 Msa0970720:CDS 35.0%
ACGTAAGGGTCAAATGATTA+GGG - chr6_4:2361172-2361191 Msa0970720:CDS 35.0%
TAGACATTGTTACAAAGCGT+TGG - chr6_4:2361339-2361358 Msa0970720:intron 35.0%
ATAACCATGATATGTTGGGT+GGG - chr6_4:2361387-2361406 Msa0970720:intron 35.0%
GTTTACGTTGTTTACCAACT+TGG + chr6_4:2361580-2361599 None:intergenic 35.0%
!!! CAACTTTTTTCTGATGCAAG+TGG - chr6_4:2361599-2361618 Msa0970720:intron 35.0%
ACACCATTGGTAAGGATAAA+AGG - chr6_4:2361678-2361697 Msa0970720:intron 35.0%
! AAGCCTTTTATCCTTACCAA+TGG + chr6_4:2361684-2361703 None:intergenic 35.0%
! AAAGGCTTGAGAGATTGTTT+TGG - chr6_4:2361696-2361715 Msa0970720:intron 35.0%
!!! AGAGATTGTTTTGGAGTGAT+GGG - chr6_4:2361705-2361724 Msa0970720:intron 35.0%
CGAATGAACTACGAGATATT+CGG - chr6_4:2361734-2361753 Msa0970720:intron 35.0%
!! GACAGTTGTACTTGTTTTTC+CGG + chr6_4:2361787-2361806 None:intergenic 35.0%
!!! TGTCCGTTTGTTATTTTCTC+TGG - chr6_4:2361803-2361822 Msa0970720:intron 35.0%
ATAACCAGACGATTGTGTTT+GGG - chr6_4:2361837-2361856 Msa0970720:intron 35.0%
AACATCTGCAATCCCAATAT+TGG + chr6_4:2362056-2362075 None:intergenic 35.0%
!! CTTCAAAAGCACTTACATCA+AGG + chr6_4:2362111-2362130 None:intergenic 35.0%
AATGCACAAAATTTCCCATG+TGG + chr6_4:2362288-2362307 None:intergenic 35.0%
ATTGTCAAGAAATGGCTACA+GGG - chr6_4:2362527-2362546 Msa0970720:CDS 35.0%
ACTGCCATTATATGATCACA+TGG + chr6_4:2362667-2362686 None:intergenic 35.0%
CTAGGCAAAACCAAACAATT+GGG + chr6_4:2362718-2362737 None:intergenic 35.0%
TCTAGGCAAAACCAAACAAT+TGG + chr6_4:2362719-2362738 None:intergenic 35.0%
!!! ATTGTTTGGTTTTGCCTAGA+TGG - chr6_4:2362719-2362738 Msa0970720:CDS 35.0%
TTTGCAAATTTCGACCATCT+AGG + chr6_4:2362736-2362755 None:intergenic 35.0%
!! ATTCGTGAGAAGTATTCAAG+TGG - chr6_4:2362763-2362782 Msa0970720:CDS 35.0%
ATTCAAGTGGTTCTTTGTAC+TGG - chr6_4:2362776-2362795 Msa0970720:CDS 35.0%
TTCAAGTGGTTCTTTGTACT+GGG - chr6_4:2362777-2362796 Msa0970720:CDS 35.0%
! GATTTTGTTGAAAGCTTGAG+TGG - chr6_4:2362889-2362908 Msa0970720:CDS 35.0%
! TTTTGTTGAAAGCTTGAGTG+GGG - chr6_4:2362891-2362910 Msa0970720:CDS 35.0%
! ATTATCTCCAGTTTTGCCTA+CGG - chr6_4:2362957-2362976 Msa0970720:CDS 35.0%
ACGCAAACTTGTAGTAATTG+TGG - chr6_4:2363072-2363091 Msa0970720:CDS 35.0%
TTCAAATTCGTCTTCACCAT+TGG + chr6_4:2363169-2363188 None:intergenic 35.0%
!!! GATCGTTTGTTTTTGGATGC+AGG - chr6_4:2360722-2360741 Msa0970720:intron 40.0%
!!! TTTGTTTTTGGATGCAGGAC+TGG - chr6_4:2360727-2360746 Msa0970720:intron 40.0%
!!! TTGTTTTTGGATGCAGGACT+GGG - chr6_4:2360728-2360747 Msa0970720:intron 40.0%
GCATCTACAACCATTGAATC+TGG - chr6_4:2360765-2360784 Msa0970720:intron 40.0%
GTAACATTATGCGACCAGTA+AGG + chr6_4:2360848-2360867 None:intergenic 40.0%
TACTGGTCGCATAATGTTAC+AGG - chr6_4:2360848-2360867 Msa0970720:CDS 40.0%
!! GAAGATGGATTAGATGGTTC+AGG - chr6_4:2360996-2361015 Msa0970720:CDS 40.0%
!! TGTTGGTTTGCTAGAATGTC+CGG - chr6_4:2361140-2361159 Msa0970720:CDS 40.0%
AGGGTCAAATGATTAGGGAT+CGG - chr6_4:2361177-2361196 Msa0970720:CDS 40.0%
TTCATGTGAAGGGTTTAGAG+AGG - chr6_4:2361232-2361251 Msa0970720:intron 40.0%
TGAAGGGTTTAGAGAGGATA+GGG - chr6_4:2361238-2361257 Msa0970720:intron 40.0%
CGAAACAAGATGTGGATGTA+AGG - chr6_4:2361298-2361317 Msa0970720:intron 40.0%
CATAACCATGATATGTTGGG+TGG - chr6_4:2361386-2361405 Msa0970720:intron 40.0%
TCACTCATCTTTCTGTATGC+AGG + chr6_4:2361431-2361450 None:intergenic 40.0%
GCATACAGAAAGATGAGTGA+AGG - chr6_4:2361431-2361450 Msa0970720:intron 40.0%
GATGAGTGAAGGTGATATTG+AGG - chr6_4:2361442-2361461 Msa0970720:intron 40.0%
ATTGAACGCAGTAGAAAAGC+AGG - chr6_4:2361467-2361486 Msa0970720:intron 40.0%
TTGAACGCAGTAGAAAAGCA+GGG - chr6_4:2361468-2361487 Msa0970720:intron 40.0%
ATGGTACCGTACATTTGGTA+TGG + chr6_4:2361500-2361519 None:intergenic 40.0%
ATACCAAATGTACGGTACCA+TGG - chr6_4:2361499-2361518 Msa0970720:intron 40.0%
! TTTTTCTGATGCAAGTGGTG+CGG - chr6_4:2361604-2361623 Msa0970720:intron 40.0%
TGTGTGTCACAAACATAAGC+GGG + chr6_4:2361661-2361680 None:intergenic 40.0%
GTGTGTGTCACAAACATAAG+CGG + chr6_4:2361662-2361681 None:intergenic 40.0%
ATGTTTGTGACACACACCAT+TGG - chr6_4:2361665-2361684 Msa0970720:intron 40.0%
!!! GAGAGATTGTTTTGGAGTGA+TGG - chr6_4:2361704-2361723 Msa0970720:intron 40.0%
!!! GAGATTGTTTTGGAGTGATG+GGG - chr6_4:2361706-2361725 Msa0970720:intron 40.0%
!! TTGCTTTTGATGCAACCTAC+CGG - chr6_4:2361765-2361784 Msa0970720:intron 40.0%
!! GTTGTACTTGTTTTTCCGGT+AGG + chr6_4:2361783-2361802 None:intergenic 40.0%
ACACAATCGTCTGGTTATGA+TGG + chr6_4:2361835-2361854 None:intergenic 40.0%
CATAACCAGACGATTGTGTT+TGG - chr6_4:2361836-2361855 Msa0970720:intron 40.0%
! AGGCATTGTAACACGAGAAA+CGG - chr6_4:2361862-2361881 Msa0970720:intron 40.0%
AGTGTCTCCATCGGTAATTA+CGG + chr6_4:2361951-2361970 None:intergenic 40.0%
! AGAAACGCATCGACCAATAT+TGG - chr6_4:2362040-2362059 Msa0970720:intron 40.0%
! GAAACGCATCGACCAATATT+GGG - chr6_4:2362041-2362060 Msa0970720:intron 40.0%
! TGAAGAGTTATGGGCTGAAA+TGG - chr6_4:2362126-2362145 Msa0970720:intron 40.0%
GCTGAAATGGTTCAGAAGTT+TGG - chr6_4:2362139-2362158 Msa0970720:intron 40.0%
ATAAGGGGAAGTTTCTTTGC+TGG - chr6_4:2362226-2362245 Msa0970720:intron 40.0%
! CAGGTTGACCATAGTTAGAT+TGG + chr6_4:2362393-2362412 None:intergenic 40.0%
TTTCTCGATAGAACGTAGAC+TGG + chr6_4:2362425-2362444 None:intergenic 40.0%
AGCTGCAAAGTTGTTTACGA+AGG - chr6_4:2362447-2362466 Msa0970720:intron 40.0%
GATTGTCAAGAAATGGCTAC+AGG - chr6_4:2362526-2362545 Msa0970720:CDS 40.0%
!! GTTTCAAAGTACCGTCTTGA+TGG - chr6_4:2362562-2362581 Msa0970720:CDS 40.0%
! TGTTTCCTTTTGCGAAGAAC+CGG - chr6_4:2362597-2362616 Msa0970720:CDS 40.0%
CAATCTGCAGCAAGATATTC+TGG - chr6_4:2362805-2362824 Msa0970720:CDS 40.0%
TCATTTACCGTAGGCAAAAC+TGG + chr6_4:2362967-2362986 None:intergenic 40.0%
! AGTTTTGCCTACGGTAAATG+AGG - chr6_4:2362966-2362985 Msa0970720:CDS 40.0%
TTCTAACAACCTCAGGATCA+AGG + chr6_4:2363002-2363021 None:intergenic 40.0%
GTTGTTAGAACGAAAGGATG+TGG - chr6_4:2363012-2363031 Msa0970720:CDS 40.0%
AGGATGTGGTTCAATTGCTA+CGG - chr6_4:2363026-2363045 Msa0970720:CDS 40.0%
CATACACTTAATCCTGCCAA+TGG - chr6_4:2363150-2363169 Msa0970720:CDS 40.0%
CTACTATAGTCAGACTCAGA+CGG - chr6_4:2363209-2363228 Msa0970720:intron 40.0%
TTGTAGGATATTGGCACACA+AGG - chr6_4:2363340-2363359 Msa0970720:CDS 40.0%
!! GGGTGGAGATCGTTTGTTTT+TGG - chr6_4:2360715-2360734 Msa0970720:intron 45.0%
GACACGACAGAAGAAAGTGA+TGG - chr6_4:2360870-2360889 Msa0970720:CDS 45.0%
!! GATGGATTAGATGGTTCAGG+TGG - chr6_4:2360999-2361018 Msa0970720:CDS 45.0%
!! GTTGGTTTGCTAGAATGTCC+GGG - chr6_4:2361141-2361160 Msa0970720:CDS 45.0%
GGGTCAAATGATTAGGGATC+GGG - chr6_4:2361178-2361197 Msa0970720:CDS 45.0%
CAAATGATTAGGGATCGGGA+AGG - chr6_4:2361182-2361201 Msa0970720:CDS 45.0%
GTGAAGGGTTTAGAGAGGAT+AGG - chr6_4:2361237-2361256 Msa0970720:intron 45.0%
GAAGGGTTTAGAGAGGATAG+GGG - chr6_4:2361239-2361258 Msa0970720:intron 45.0%
AAGGGTTTAGAGAGGATAGG+GGG - chr6_4:2361240-2361259 Msa0970720:intron 45.0%
AGAGGATAGGGGGTTAACAA+GGG - chr6_4:2361250-2361269 Msa0970720:intron 45.0%
AAGTCCCACCCAACATATCA+TGG + chr6_4:2361394-2361413 None:intergenic 45.0%
ACCAACCTTGTGAAAACCAC+CGG + chr6_4:2361534-2361553 None:intergenic 45.0%
TGTGACACACACCATTGGTA+AGG - chr6_4:2361670-2361689 Msa0970720:intron 45.0%
AAACGGAAGAGACTTACGTC+TGG - chr6_4:2361879-2361898 Msa0970720:intron 45.0%
AGAGACTTACGTCTGGTTGT+TGG - chr6_4:2361886-2361905 Msa0970720:intron 45.0%
CCATCGGTAATTACGGATAC+CGG + chr6_4:2361944-2361963 None:intergenic 45.0%
TCTCATTGCAGTGTCTCCAT+CGG + chr6_4:2361960-2361979 None:intergenic 45.0%
!! ATAGTCGGTGATGGGCTTTA+GGG + chr6_4:2362003-2362022 None:intergenic 45.0%
CAAAATTTCCCATGTGGCTG+TGG + chr6_4:2362282-2362301 None:intergenic 45.0%
!! CGTAGACTGGTTTGTAACAC+AGG + chr6_4:2362412-2362431 None:intergenic 45.0%
TGTTTGAGGATGGAGTCACT+CGG - chr6_4:2362637-2362656 Msa0970720:CDS 45.0%
CGATGAGCTTCCCAATTGTT+TGG - chr6_4:2362705-2362724 Msa0970720:CDS 45.0%
CAGCAACTTCTTTGCACAAC+TGG + chr6_4:2362837-2362856 None:intergenic 45.0%
CAGTTGTGCAAAGAAGTTGC+TGG - chr6_4:2362835-2362854 Msa0970720:CDS 45.0%
TCGTCTTCCTCATTTACCGT+AGG + chr6_4:2362976-2362995 None:intergenic 45.0%
CCTTTCGTTCTAACAACCTC+AGG + chr6_4:2363009-2363028 None:intergenic 45.0%
CCTGAGGTTGTTAGAACGAA+AGG - chr6_4:2363006-2363025 Msa0970720:CDS 45.0%
GGATGTGGTTCAATTGCTAC+GGG - chr6_4:2363027-2363046 Msa0970720:CDS 45.0%
GTGGACAACATCGTCTATTG+TGG + chr6_4:2363107-2363126 None:intergenic 45.0%
GCAGGATTAAGTGTATGACC+AGG + chr6_4:2363147-2363166 None:intergenic 45.0%
AATTCGTCTTCACCATTGGC+AGG + chr6_4:2363165-2363184 None:intergenic 45.0%
! ATGGATTGTAGACCAGAGGG+TGG - chr6_4:2360698-2360717 Msa0970720:CDS 50.0%
AACAAACGATCTCCACCCTC+TGG + chr6_4:2360713-2360732 None:intergenic 50.0%
GATGGTAGCAACACGTCAAG+CGG - chr6_4:2360888-2360907 Msa0970720:CDS 50.0%
GCCTCTTCTTCAGATTCGAC+CGG + chr6_4:2360966-2360985 None:intergenic 50.0%
TCCGGGTTCTCTGTACGTAA+GGG - chr6_4:2361158-2361177 Msa0970720:CDS 50.0%
ACCCTTACGTACAGAGAACC+CGG + chr6_4:2361162-2361181 None:intergenic 50.0%
GAGAGGATAGGGGGTTAACA+AGG - chr6_4:2361249-2361268 Msa0970720:intron 50.0%
GGTTAACAAGGGAGAACCGA+AGG - chr6_4:2361261-2361280 Msa0970720:intron 50.0%
! CCACATCTTGTTTCGTTGCG+TGG + chr6_4:2361293-2361312 None:intergenic 50.0%
CCACGCAACGAAACAAGATG+TGG - chr6_4:2361290-2361309 Msa0970720:intron 50.0%
ATGTTGGGTGGGACTTTGTG+TGG - chr6_4:2361398-2361417 Msa0970720:intron 50.0%
TGGCCATGGTACCGTACATT+TGG + chr6_4:2361505-2361524 None:intergenic 50.0%
GTGAAAACCACCGGATGCAT+TGG + chr6_4:2361525-2361544 None:intergenic 50.0%
! TGCATCCGGTGGTTTTCACA+AGG - chr6_4:2361526-2361545 Msa0970720:intron 50.0%
! TCCGGTGGTTTTCACAAGGT+TGG - chr6_4:2361530-2361549 Msa0970720:intron 50.0%
CTGTCCCAAACACAATCGTC+TGG + chr6_4:2361844-2361863 None:intergenic 50.0%
! CAGACGATTGTGTTTGGGAC+AGG - chr6_4:2361842-2361861 Msa0970720:intron 50.0%
TGCTATGAAAGGGAAGCAGC+CGG - chr6_4:2361922-2361941 Msa0970720:intron 50.0%
CCGGTATCCGTAATTACCGA+TGG - chr6_4:2361941-2361960 Msa0970720:intron 50.0%
!! CATAGTCGGTGATGGGCTTT+AGG + chr6_4:2362004-2362023 None:intergenic 50.0%
TGGTCGATGCGTTTCTCAAC+AGG + chr6_4:2362036-2362055 None:intergenic 50.0%
ACTTCCCCTTATGTGAGCAG+TGG + chr6_4:2362218-2362237 None:intergenic 50.0%
! ACCGTCTTGATGGCAGTGAA+TGG - chr6_4:2362572-2362591 Msa0970720:CDS 50.0%
GCCATTCACTGCCATCAAGA+CGG + chr6_4:2362576-2362595 None:intergenic 50.0%
! GTCAACCGGTTCTTCGCAAA+AGG + chr6_4:2362605-2362624 None:intergenic 50.0%
AGACGAACTCCTTGATCCTG+AGG - chr6_4:2362990-2363009 Msa0970720:CDS 50.0%
TCAATTGCTACGGGTACTCC+AGG - chr6_4:2363036-2363055 Msa0970720:CDS 50.0%
GCCGGTCGAATCTGAAGAAG+AGG - chr6_4:2360962-2360981 Msa0970720:CDS 55.0%
GTCCGGGTTCTCTGTACGTA+AGG - chr6_4:2361157-2361176 Msa0970720:CDS 55.0%
GGTACCATGGCCAATGCATC+CGG - chr6_4:2361512-2361531 Msa0970720:intron 55.0%
CCACGCACATAGTCGGTGAT+GGG + chr6_4:2362011-2362030 None:intergenic 55.0%
! ACAGGTGCCACGCACATAGT+CGG + chr6_4:2362018-2362037 None:intergenic 55.0%
TGTGGGCCACTGCTCACATA+AGG - chr6_4:2362209-2362228 Msa0970720:intron 55.0%
GTGGGCCACTGCTCACATAA+GGG - chr6_4:2362210-2362229 Msa0970720:intron 55.0%
TGGGCCACTGCTCACATAAG+GGG - chr6_4:2362211-2362230 Msa0970720:intron 55.0%
TCGAACTACGTCTCGTTGCG+AGG - chr6_4:2362252-2362271 Msa0970720:intron 55.0%
GGTAGCAACACGTCAAGCGG+TGG - chr6_4:2360891-2360910 Msa0970720:CDS 60.0%
ACCATGGCCAATGCATCCGG+TGG - chr6_4:2361515-2361534 Msa0970720:intron 60.0%
! ACCACCGGATGCATTGGCCA+TGG + chr6_4:2361519-2361538 None:intergenic 60.0%
! CCCATCACCGACTATGTGCG+TGG - chr6_4:2362008-2362027 Msa0970720:intron 60.0%
GCCACGCACATAGTCGGTGA+TGG + chr6_4:2362012-2362031 None:intergenic 60.0%
TTGCTACGGGTACTCCAGGC+AGG - chr6_4:2363040-2363059 Msa0970720:CDS 60.0%
CGTTGCGTGGCTCACGCCTT+CGG + chr6_4:2361280-2361299 None:intergenic 65.0%
! GAGGCGCTCCACAGCCACAT+GGG - chr6_4:2362271-2362290 Msa0970720:intron 65.0%
! CGAGGCGCTCCACAGCCACA+TGG - chr6_4:2362270-2362289 Msa0970720:intron 70.0%
TGCGTGCGTTTGCGCCTGCC+TGG + chr6_4:2363057-2363076 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 2360698 2363366 2360698 ID=Msa0970720;Name=Msa0970720
chr6_4 mRNA 2360698 2363366 2360698 ID=Msa0970720-mRNA-1;Parent=Msa0970720;Name=Msa0970720-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|0.25|1|1|4|0|404
chr6_4 exon 2363304 2363366 2363304 ID=Msa0970720-mRNA-1:exon:1144;Parent=Msa0970720-mRNA-1
chr6_4 exon 2362480 2363194 2362480 ID=Msa0970720-mRNA-1:exon:1143;Parent=Msa0970720-mRNA-1
chr6_4 exon 2360834 2361249 2360834 ID=Msa0970720-mRNA-1:exon:1142;Parent=Msa0970720-mRNA-1
chr6_4 exon 2360698 2360718 2360698 ID=Msa0970720-mRNA-1:exon:1141;Parent=Msa0970720-mRNA-1
chr6_4 CDS 2363304 2363366 2363304 ID=Msa0970720-mRNA-1:cds;Parent=Msa0970720-mRNA-1
chr6_4 CDS 2362480 2363194 2362480 ID=Msa0970720-mRNA-1:cds;Parent=Msa0970720-mRNA-1
chr6_4 CDS 2360834 2361249 2360834 ID=Msa0970720-mRNA-1:cds;Parent=Msa0970720-mRNA-1
chr6_4 CDS 2360698 2360718 2360698 ID=Msa0970720-mRNA-1:cds;Parent=Msa0970720-mRNA-1
Gene Sequence

>Msa0970720

ATGGATTGTAGACCAGAGGGTGGAGATCGTTTGTTTTTGGATGCAGGACTGGGTATCACAAATGACACGACAGAAGAAAGTGATGGTAGCAACACGTCAAGCGGTGGTTGTAGTACTACAGTCGAAACTGAAAACTCAAACTCACAAGTATCTTTGCCGGTCGAATCTGAAGAAGAGGCAAATTCTATTGAAGATGGATTAGATGGTTCAGGTGGTCAAGCAATTGTGTTTAACGATATGGGTGATATAATGAAGTTTGACATGGAAAAGTTTTGCATTGATGATGTTGGAAGGTATGATTTTGCTAGTTTGGATGTTGCCTACCTGTTTTATTGTTGGTTTGCTAGAATGTCCGGGTTCTCTGTACGTAAGGGTCAAATGATTAGGGATCGGGAAGGTGTTGTTTTGCAGCAAACGTTTTTATGTTCATGTGAAGGGTTTAGAGAGGATAGGGGGTTAACAAGGGAGAACCGAAGGCGTGAGCCACGCAACGAAACAAGATGTGGATGTAAGGCAAAATTTAGAGTTCATGTAGACATTGTTACAAAGCGTTGGTATGTCACTGTGTTTGAAATTGATCATAACCATGATATGTTGGGTGGGACTTTGTGTGGATTACTACCTGCATACAGAAAGATGAGTGAAGGTGATATTGAGGAAATTGAACGCAGTAGAAAAGCAGGGATAAGACCATACCAAATGTACGGTACCATGGCCAATGCATCCGGTGGTTTTCACAAGGTTGGTTTTGTTAAAAAGGATTTGTATAACCAAGTTGCAAGATATTCTGGTATAGTCCAGTTGTGCAAAGAAGTTGCTGGATTAGTTTATGAAGATCTTGATGAGTATAATGATTTTGTTGAAAGCTTGAGTGGGGAAATCCATAGATTAAAATTAAAGAAAAATGTTGAATCTTCTGGATTATCTCCAGTTTTGCCTACGGTAAATGAGGAAGACGAACTCCTTGATCCTGAGGTTGTTAGAACGAAAGGATGTGGTTCAATTGCTACGGGTACTCCAGGCAGGCGCAAACGCACGCAAACTTGTAGTAATTGTGGTGTAATAGGCCACAATAGACGATGTTGTCCACAGCTAAATTTAAATCTTCCTGGTCATACACTTAATCCTGCCAATGGTGAAGACGAATTTGAAGAAGACGATGACAACTACTACTACTATAGTCAGACTCAGACGGATATTGGCACACAAGGTTGA

Protein sequence

>Msa0970720

MDCRPEGGDRLFLDAGLGITNDTTEESDGSNTSSGGCSTTVETENSNSQVSLPVESEEEANSIEDGLDGSGGQAIVFNDMGDIMKFDMEKFCIDDVGRYDFASLDVAYLFYCWFARMSGFSVRKGQMIRDREGVVLQQTFLCSCEGFREDRGLTRENRRREPRNETRCGCKAKFRVHVDIVTKRWYVTVFEIDHNHDMLGGTLCGLLPAYRKMSEGDIEEIERSRKAGIRPYQMYGTMANASGGFHKVGFVKKDLYNQVARYSGIVQLCKEVAGLVYEDLDEYNDFVESLSGEIHRLKLKKNVESSGLSPVLPTVNEEDELLDPEVVRTKGCGSIATGTPGRRKRTQTCSNCGVIGHNRRCCPQLNLNLPGHTLNPANGEDEFEEDDDNYYYYSQTQTDIGTQG*