Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970860 | XP_003618177.1 | 57.471 | 348 | 84 | 6 | 6 | 290 | 1 | 347 | 9.31e-115 | 357 |
Msa0970860 | XP_003618177.1 | 82.865 | 356 | 50 | 4 | 286 | 639 | 1 | 347 | 0.0 | 581 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970860 | sp|Q9FIM0|AGL82_ARATH | 34.507 | 142 | 88 | 3 | 291 | 430 | 6 | 144 | 1.43e-15 | 81.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970860 | G7KHI3 | 57.471 | 348 | 84 | 6 | 6 | 290 | 1 | 347 | 4.44e-115 | 357 |
Msa0970860 | G7KHI3 | 82.865 | 356 | 50 | 4 | 286 | 639 | 1 | 347 | 0.0 | 581 |
Gene ID | Type | Classification |
---|---|---|
Msa0970860 | TF | MADS-M-type |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970860 | MtrunA17_Chr6g0449861 | 82.865 | 356 | 50 | 4 | 286 | 639 | 9 | 355 | 0.0 | 580 |
Msa0970860 | MtrunA17_Chr6g0449861 | 57.143 | 350 | 86 | 6 | 4 | 290 | 7 | 355 | 7.60e-119 | 358 |
Msa0970860 | MtrunA17_Chr6g0449851 | 84.127 | 315 | 20 | 3 | 6 | 290 | 1 | 315 | 0.0 | 528 |
Msa0970860 | MtrunA17_Chr6g0449851 | 61.891 | 349 | 92 | 5 | 286 | 633 | 1 | 309 | 3.53e-142 | 416 |
Msa0970860 | MtrunA17_Chr6g0457851 | 64.917 | 362 | 111 | 3 | 282 | 639 | 7 | 356 | 2.12e-159 | 461 |
Msa0970860 | MtrunA17_Chr6g0457851 | 56.447 | 349 | 91 | 4 | 3 | 290 | 8 | 356 | 3.90e-122 | 366 |
Msa0970860 | MtrunA17_Chr1g0212151 | 59.834 | 361 | 112 | 5 | 286 | 632 | 1 | 342 | 2.10e-132 | 392 |
Msa0970860 | MtrunA17_Chr1g0212151 | 52.809 | 356 | 88 | 8 | 6 | 290 | 1 | 347 | 2.60e-107 | 328 |
Msa0970860 | MtrunA17_Chr1g0212471 | 31.844 | 179 | 121 | 1 | 286 | 464 | 1 | 178 | 9.31e-28 | 110 |
Msa0970860 | MtrunA17_Chr1g0212471 | 35.256 | 156 | 86 | 2 | 6 | 146 | 1 | 156 | 1.15e-23 | 99.0 |
Msa0970860 | MtrunA17_Chr4g0059631 | 36.842 | 171 | 100 | 2 | 286 | 456 | 1 | 163 | 1.38e-27 | 112 |
Msa0970860 | MtrunA17_Chr4g0059631 | 35.948 | 153 | 85 | 3 | 6 | 145 | 1 | 153 | 1.38e-23 | 100 |
Msa0970860 | MtrunA17_Chr2g0303981 | 36.842 | 152 | 91 | 2 | 290 | 440 | 7 | 154 | 4.81e-25 | 102 |
Msa0970860 | MtrunA17_Chr2g0303981 | 36.000 | 150 | 83 | 3 | 8 | 144 | 5 | 154 | 4.62e-22 | 94.4 |
Msa0970860 | MtrunA17_Chr4g0022641 | 34.807 | 181 | 103 | 4 | 6 | 173 | 1 | 179 | 9.92e-25 | 107 |
Msa0970860 | MtrunA17_Chr4g0022641 | 34.132 | 167 | 107 | 1 | 286 | 452 | 1 | 164 | 1.49e-24 | 106 |
Msa0970860 | MtrunA17_Chr5g0432691 | 31.515 | 165 | 99 | 5 | 286 | 442 | 1 | 159 | 8.12e-15 | 72.8 |
Msa0970860 | MtrunA17_Chr3g0107351 | 31.481 | 162 | 97 | 5 | 289 | 442 | 3 | 158 | 1.09e-14 | 72.0 |
Msa0970860 | MtrunA17_Chr3g0107341 | 34.356 | 163 | 91 | 6 | 289 | 442 | 3 | 158 | 1.89e-14 | 71.6 |
Msa0970860 | MtrunA17_Chr2g0283941 | 33.945 | 109 | 65 | 3 | 286 | 393 | 1 | 103 | 2.00e-13 | 70.5 |
Msa0970860 | MtrunA17_Chr3g0107361 | 32.099 | 162 | 96 | 6 | 289 | 442 | 3 | 158 | 2.03e-13 | 68.6 |
Msa0970860 | MtrunA17_Chr1g0197321 | 33.607 | 122 | 72 | 4 | 286 | 407 | 1 | 113 | 4.50e-13 | 67.4 |
Msa0970860 | MtrunA17_Chr8g0380021 | 28.667 | 150 | 94 | 3 | 5 | 146 | 16 | 160 | 6.15e-13 | 68.9 |
Msa0970860 | MtrunA17_Chr3g0107381 | 23.504 | 234 | 147 | 8 | 286 | 500 | 1 | 221 | 8.22e-13 | 68.2 |
Msa0970860 | MtrunA17_Chr2g0284911 | 28.758 | 153 | 90 | 3 | 5 | 146 | 15 | 159 | 1.01e-12 | 68.9 |
Msa0970860 | MtrunA17_Chr3g0107331 | 34.259 | 108 | 64 | 3 | 290 | 396 | 4 | 105 | 1.53e-12 | 65.9 |
Msa0970860 | MtrunA17_Chr3g0134451 | 33.333 | 102 | 62 | 2 | 6 | 102 | 1 | 101 | 2.02e-12 | 68.6 |
Msa0970860 | MtrunA17_Chr2g0279821 | 28.144 | 167 | 94 | 5 | 6 | 154 | 1 | 159 | 2.18e-12 | 67.4 |
Msa0970860 | MtrunA17_Chr5g0420351 | 29.688 | 128 | 77 | 3 | 286 | 413 | 1 | 115 | 2.28e-12 | 65.5 |
Msa0970860 | MtrunA17_Chr5g0425191 | 47.059 | 51 | 27 | 0 | 6 | 56 | 1 | 51 | 9.69e-12 | 62.0 |
Msa0970860 | MtrunA17_Chr3g0110131 | 26.122 | 245 | 143 | 8 | 286 | 500 | 1 | 237 | 1.77e-11 | 64.7 |
Msa0970860 | MtrunA17_Chr1g0197261 | 28.994 | 169 | 93 | 5 | 286 | 440 | 1 | 156 | 2.03e-11 | 62.8 |
Msa0970860 | MtrunA17_Chr5g0404951 | 29.932 | 147 | 91 | 4 | 6 | 144 | 1 | 143 | 2.09e-11 | 64.3 |
Msa0970860 | MtrunA17_Chr4g0014321 | 37.288 | 118 | 59 | 5 | 286 | 402 | 1 | 104 | 2.59e-11 | 63.9 |
Msa0970860 | MtrunA17_Chr8g0351751 | 33.962 | 106 | 61 | 4 | 286 | 388 | 1 | 100 | 2.62e-11 | 64.3 |
Msa0970860 | MtrunA17_Chr4g0061691 | 28.846 | 156 | 85 | 6 | 6 | 146 | 1 | 145 | 2.76e-11 | 63.9 |
Msa0970860 | MtrunA17_Chr1g0173161 | 48.980 | 49 | 25 | 0 | 6 | 54 | 1 | 49 | 7.06e-11 | 58.9 |
Msa0970860 | MtrunA17_Chr7g0246381 | 44.898 | 49 | 27 | 0 | 6 | 54 | 1 | 49 | 7.60e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970860 | AT5G55690.1 | 32.700 | 263 | 127 | 12 | 291 | 542 | 6 | 229 | 1.58e-22 | 98.6 |
Msa0970860 | AT5G55690.1 | 38.710 | 124 | 56 | 2 | 6 | 116 | 1 | 117 | 2.25e-16 | 80.5 |
Msa0970860 | AT5G55690.2 | 32.700 | 263 | 127 | 12 | 291 | 542 | 6 | 229 | 1.58e-22 | 98.6 |
Msa0970860 | AT5G55690.2 | 38.710 | 124 | 56 | 2 | 6 | 116 | 1 | 117 | 2.25e-16 | 80.5 |
Msa0970860 | AT5G58890.1 | 34.507 | 142 | 88 | 3 | 291 | 430 | 6 | 144 | 1.46e-16 | 81.3 |
Msa0970860 | AT3G18650.1 | 37.037 | 135 | 71 | 5 | 301 | 429 | 31 | 157 | 9.84e-14 | 73.9 |
Msa0970860 | AT3G18650.1 | 35.200 | 125 | 69 | 4 | 21 | 134 | 31 | 154 | 1.91e-11 | 66.6 |
Msa0970860 | AT1G22590.2 | 29.193 | 161 | 103 | 4 | 286 | 441 | 1 | 155 | 1.30e-12 | 66.6 |
Msa0970860 | AT3G57230.1 | 27.152 | 151 | 92 | 6 | 6 | 146 | 1 | 143 | 4.52e-12 | 67.0 |
Msa0970860 | AT3G57230.4 | 27.152 | 151 | 92 | 6 | 6 | 146 | 1 | 143 | 4.52e-12 | 67.0 |
Msa0970860 | AT2G22630.1 | 55.102 | 49 | 22 | 0 | 6 | 54 | 1 | 49 | 4.77e-12 | 66.6 |
Msa0970860 | AT2G22630.2 | 55.102 | 49 | 22 | 0 | 6 | 54 | 1 | 49 | 4.77e-12 | 66.6 |
Msa0970860 | AT4G18960.1 | 28.387 | 155 | 92 | 4 | 3 | 146 | 14 | 160 | 7.87e-12 | 66.2 |
Msa0970860 | AT4G09960.5 | 28.289 | 152 | 90 | 4 | 6 | 146 | 11 | 154 | 1.00e-11 | 65.9 |
Msa0970860 | AT4G09960.1 | 28.289 | 152 | 90 | 4 | 6 | 146 | 1 | 144 | 1.06e-11 | 65.5 |
Msa0970860 | AT4G09960.6 | 28.289 | 152 | 90 | 4 | 6 | 146 | 2 | 145 | 1.14e-11 | 65.5 |
Msa0970860 | AT4G37940.3 | 27.815 | 151 | 91 | 3 | 6 | 146 | 1 | 143 | 1.29e-11 | 63.9 |
Msa0970860 | AT4G09960.2 | 27.815 | 151 | 90 | 4 | 6 | 145 | 1 | 143 | 1.40e-11 | 65.1 |
Msa0970860 | AT3G57390.3 | 46.667 | 75 | 32 | 2 | 6 | 74 | 1 | 73 | 1.43e-11 | 65.1 |
Msa0970860 | AT3G58780.5 | 26.144 | 153 | 94 | 3 | 5 | 146 | 21 | 165 | 1.61e-11 | 65.5 |
Msa0970860 | AT2G42830.2 | 26.797 | 153 | 93 | 3 | 5 | 146 | 15 | 159 | 1.76e-11 | 65.5 |
Msa0970860 | AT3G58780.1 | 26.144 | 153 | 94 | 3 | 5 | 146 | 15 | 159 | 1.88e-11 | 65.1 |
Msa0970860 | AT2G42830.1 | 26.797 | 153 | 93 | 3 | 5 | 146 | 15 | 159 | 1.88e-11 | 65.1 |
Msa0970860 | AT1G31640.1 | 22.467 | 227 | 144 | 8 | 289 | 507 | 3 | 205 | 1.90e-11 | 67.0 |
Msa0970860 | AT4G09960.3 | 28.105 | 153 | 91 | 4 | 5 | 146 | 26 | 170 | 1.99e-11 | 65.1 |
Msa0970860 | AT4G37940.1 | 27.815 | 151 | 91 | 3 | 6 | 146 | 1 | 143 | 2.22e-11 | 64.7 |
Msa0970860 | AT3G05860.2 | 36.364 | 77 | 43 | 2 | 286 | 362 | 1 | 71 | 2.42e-11 | 63.9 |
Msa0970860 | AT3G05860.3 | 37.662 | 77 | 42 | 3 | 286 | 362 | 1 | 71 | 2.54e-11 | 64.7 |
Msa0970860 | AT3G57390.1 | 46.667 | 75 | 32 | 2 | 6 | 74 | 1 | 73 | 2.68e-11 | 64.7 |
Msa0970860 | AT4G37940.4 | 28.188 | 149 | 89 | 3 | 6 | 144 | 1 | 141 | 3.32e-11 | 63.9 |
Msa0970860 | AT3G05860.1 | 37.662 | 77 | 42 | 3 | 286 | 362 | 1 | 71 | 3.59e-11 | 64.7 |
Msa0970860 | AT3G57230.2 | 26.846 | 149 | 91 | 6 | 6 | 144 | 1 | 141 | 3.75e-11 | 62.0 |
Msa0970860 | AT5G23260.2 | 29.932 | 147 | 93 | 3 | 6 | 146 | 1 | 143 | 5.93e-11 | 63.9 |
Msa0970860 | AT4G09960.4 | 28.105 | 153 | 91 | 4 | 5 | 146 | 95 | 239 | 6.46e-11 | 64.7 |
Msa0970860 | AT5G20240.2 | 49.020 | 51 | 26 | 0 | 6 | 56 | 1 | 51 | 7.93e-11 | 61.2 |
Msa0970860 | AT5G23260.4 | 29.730 | 148 | 94 | 3 | 5 | 146 | 16 | 159 | 8.04e-11 | 63.5 |
Msa0970860 | AT3G58780.4 | 25.806 | 155 | 96 | 3 | 4 | 147 | 14 | 160 | 9.01e-11 | 63.5 |
Msa0970860 | AT5G23260.3 | 33.333 | 99 | 60 | 1 | 6 | 98 | 1 | 99 | 9.10e-11 | 63.2 |
Msa0970860 | AT3G58780.2 | 24.648 | 142 | 103 | 1 | 5 | 146 | 15 | 152 | 9.14e-11 | 63.2 |
Msa0970860 | AT1G77950.3 | 40.278 | 72 | 38 | 1 | 6 | 72 | 1 | 72 | 9.18e-11 | 63.2 |
Msa0970860 | AT1G77950.2 | 40.278 | 72 | 38 | 1 | 6 | 72 | 1 | 72 | 9.18e-11 | 63.2 |
Msa0970860 | AT1G77950.1 | 40.278 | 72 | 38 | 1 | 6 | 72 | 1 | 72 | 9.18e-11 | 63.2 |
Msa0970860 | AT1G77950.4 | 40.278 | 72 | 38 | 1 | 6 | 72 | 1 | 72 | 9.18e-11 | 63.2 |
Find 116 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTCTTCATATCGATTT+TGG | 0.101762 | 6_4:-2507826 | None:intergenic |
TCCCATGAATATCTACTTTA+TGG | 0.106807 | 6_4:+2507966 | Msa0970860:CDS |
GTGTCTTTCGGCCATGTTTC+AGG | 0.186338 | 6_4:-2512225 | None:intergenic |
GATGAATCTTACAATTCTTT+TGG | 0.252372 | 6_4:+2507444 | Msa0970860:CDS |
AAGCTCTCAACCTTCTTCTA+TGG | 0.280995 | 6_4:+2512743 | Msa0970860:CDS |
TTGAAGAATATTTGTATCAT+AGG | 0.296113 | 6_4:-2513054 | None:intergenic |
TCTTGAACATCATAGGTCTT+AGG | 0.310978 | 6_4:-2507336 | None:intergenic |
CCTTACTTGACCTCAAATTC+AGG | 0.312584 | 6_4:+2507582 | Msa0970860:CDS |
ATCTTCCTAGATTTCTCCTT+TGG | 0.315866 | 6_4:-2512081 | None:intergenic |
TATGCTAGAAGGAGATCTTC+TGG | 0.319876 | 6_4:+2512503 | Msa0970860:CDS |
CTTCTACCATGTAGAGTCTA+AGG | 0.320406 | 6_4:+2512782 | Msa0970860:CDS |
AGGCTACTTCGTTCCATTCA+TGG | 0.325169 | 6_4:-2508030 | None:intergenic |
ACTTTATGGATCCTATGATA+TGG | 0.335816 | 6_4:+2507980 | Msa0970860:CDS |
CAACATATCCTTGGCCTTCA+AGG | 0.352632 | 6_4:-2507233 | None:intergenic |
AAGCTCTCAACCTTCCCTTA+TGG | 0.354140 | 6_4:+2507716 | Msa0970860:CDS |
GATGAATCTTTCAATTCTCT+TGG | 0.359377 | 6_4:+2512411 | Msa0970860:CDS |
TCAAGTAAGGAGAACTAATA+AGG | 0.363002 | 6_4:-2507569 | None:intergenic |
AAAATATTCTTGAACATCAT+AGG | 0.366937 | 6_4:-2512310 | None:intergenic |
GGGTCGTGGAAGAATATCTA+TGG | 0.367126 | 6_4:+2507083 | Msa0970860:CDS |
CTTTATGCTCCCAACTTTGA+AGG | 0.375391 | 6_4:+2512186 | Msa0970860:CDS |
GAGGTTATTTGCTAGGATCT+TGG | 0.377459 | 6_4:+2512446 | Msa0970860:CDS |
TACCCTTGGCCTTCAAAGTT+GGG | 0.389570 | 6_4:-2512195 | None:intergenic |
TTTCGGCCATGTTTCAGGTT+CGG | 0.407707 | 6_4:-2512220 | None:intergenic |
AAAATATTCTTGAACATCAT+AGG | 0.416188 | 6_4:-2507343 | None:intergenic |
TATCCTTGGCCTTCAAGGTT+GGG | 0.419769 | 6_4:-2507228 | None:intergenic |
GTATTGCAAAAGAGAAAGAT+TGG | 0.420157 | 6_4:+2512105 | Msa0970860:CDS |
CTGTATGCTCCCAACCTTGA+AGG | 0.420817 | 6_4:+2507219 | Msa0970860:CDS |
CTAAAGATGAATATGCTAGA+AGG | 0.421397 | 6_4:+2512492 | Msa0970860:CDS |
ATTCATTAAGTAGATGTTCA+TGG | 0.428966 | 6_4:-2513031 | None:intergenic |
TCATTCCAAAGGAGAAATCT+AGG | 0.429671 | 6_4:+2512076 | Msa0970860:CDS |
TTGAATACTATCCATATCAT+AGG | 0.430128 | 6_4:-2507991 | None:intergenic |
GAGCTTTGTGCCAATTGAAT+TGG | 0.430763 | 6_4:-2507699 | None:intergenic |
TGCACGAGATTGAGGCTACT+TGG | 0.432844 | 6_4:-2512594 | None:intergenic |
AACATCAACATCACAAAGAA+TGG | 0.436469 | 6_4:-2507187 | None:intergenic |
AAACTTCTCTTTGCGCACTT+TGG | 0.438281 | 6_4:-2512367 | None:intergenic |
ATCCATAAAGTAGATATTCA+TGG | 0.445056 | 6_4:-2507968 | None:intergenic |
GCCACCAATGATCTCAAAAT+CGG | 0.446186 | 6_4:+2512876 | Msa0970860:CDS |
ACTTGGATTTGAGTCTAAGT+AGG | 0.446409 | 6_4:-2512577 | None:intergenic |
ACTATGACACAACAATTGAT+AGG | 0.455411 | 6_4:+2507310 | Msa0970860:CDS |
TAAGTAGATGTTCATGGGAT+AGG | 0.458812 | 6_4:-2513025 | None:intergenic |
ATTATAACACAACAATTGAT+AGG | 0.461207 | 6_4:+2512277 | Msa0970860:CDS |
TGGATTAAATATTAGATTCG+AGG | 0.461248 | 6_4:+2505975 | Msa0970860:intron |
ATACCCTTGGCCTTCAAAGT+TGG | 0.461392 | 6_4:-2512196 | None:intergenic |
GGAGGAGTAGGCATAGCAAT+AGG | 0.462020 | 6_4:-2507921 | None:intergenic |
TTGAATTGGCCAAAACCCTA+TGG | 0.463206 | 6_4:-2507685 | None:intergenic |
ATCTATGGAACTCATTCAAA+AGG | 0.463531 | 6_4:+2507098 | Msa0970860:CDS |
CAACTGTTCAACTCCATGAA+TGG | 0.470369 | 6_4:+2508017 | Msa0970860:CDS |
TTAAGATGAAGTATCAAACT+TGG | 0.470449 | 6_4:+2512388 | Msa0970860:CDS |
TTATCACAAATATTCATCAA+TGG | 0.474002 | 6_4:-2507657 | None:intergenic |
TTTCAGGTTCGGCATACCCT+TGG | 0.475656 | 6_4:-2512209 | None:intergenic |
AACAATTGAGGTTATTTGCT+AGG | 0.476502 | 6_4:+2512439 | Msa0970860:CDS |
TTTCCATTGTAATAGTATGA+TGG | 0.479664 | 6_4:-2507876 | None:intergenic |
TTAAAATCAATCTGCTTGCA+AGG | 0.480005 | 6_4:-2512828 | None:intergenic |
ATATTGTGTTCATAGAAAAT+GGG | 0.480214 | 6_4:+2507063 | Msa0970860:intron |
AAGCTCTCAACCCTCTCATA+TGG | 0.482453 | 6_4:+2512707 | Msa0970860:CDS |
ATGCTAGAAGGAGATCTTCT+GGG | 0.483728 | 6_4:+2512504 | Msa0970860:CDS |
CCTGAATTTGAGGTCAAGTA+AGG | 0.484340 | 6_4:-2507582 | None:intergenic |
TAAGTGGCCAAAACCCTAAA+GGG | 0.486281 | 6_4:-2512674 | None:intergenic |
AAAGTAGATATTCATGGGAT+AGG | 0.486977 | 6_4:-2507962 | None:intergenic |
AGCATCGACATCACAAAGAA+TGG | 0.487435 | 6_4:-2512154 | None:intergenic |
TTTCAGGTTCAACATATCCT+TGG | 0.488478 | 6_4:-2507242 | None:intergenic |
TTATCACTAATATTCATCAA+TGG | 0.491553 | 6_4:-2512648 | None:intergenic |
CTCTTGGAGATGAACAATTG+AGG | 0.499688 | 6_4:+2512427 | Msa0970860:CDS |
ATATCCTTGGCCTTCAAGGT+TGG | 0.502086 | 6_4:-2507229 | None:intergenic |
GAAGTTGGTACCTGAATTTG+AGG | 0.503776 | 6_4:-2507592 | None:intergenic |
CAAAATCGATATGAAGAAGA+AGG | 0.504284 | 6_4:+2507827 | Msa0970860:CDS |
GATAACATTGCAAAAGAGAA+AGG | 0.505631 | 6_4:+2507134 | Msa0970860:CDS |
GGAAGAGCAGGCATAGCAAT+GGG | 0.507599 | 6_4:-2512984 | None:intergenic |
TTCATTAAGTAGATGTTCAT+GGG | 0.507722 | 6_4:-2513030 | None:intergenic |
ATGGTAGAAGCTCTGTGCTC+GGG | 0.509126 | 6_4:-2512769 | None:intergenic |
GCTCCCAACTTTGAAGGCCA+AGG | 0.510014 | 6_4:+2512192 | Msa0970860:CDS |
GAGCTTTGACCCGATATAAG+TGG | 0.512541 | 6_4:-2512690 | None:intergenic |
TTGCCATCATACTATTACAA+TGG | 0.513046 | 6_4:+2507873 | Msa0970860:CDS |
TTGTGAACTGGAAACCATAA+GGG | 0.517232 | 6_4:-2507730 | None:intergenic |
ATAAGTGGCCAAAACCCTAA+AGG | 0.517760 | 6_4:-2512675 | None:intergenic |
CTTGGATTTGAGTCTAAGTA+GGG | 0.520886 | 6_4:-2512576 | None:intergenic |
TGGCATTAGCATCAACATGA+TGG | 0.525287 | 6_4:-2512857 | None:intergenic |
CATGGTAGAAGCTCTGTGCT+CGG | 0.530303 | 6_4:-2512770 | None:intergenic |
TAAAGATGATGTATCCAACT+TGG | 0.530838 | 6_4:+2507421 | Msa0970860:CDS |
CTTCAAGGTTGGGAGCATAC+AGG | 0.533279 | 6_4:-2507218 | None:intergenic |
TGAATTGGCCAAAACCCTAT+GGG | 0.542091 | 6_4:-2507684 | None:intergenic |
AGGTTTGCAAGATTCTGAAA+AGG | 0.545328 | 6_4:-2507942 | None:intergenic |
TCCATAAAGTAGATATTCAT+GGG | 0.546951 | 6_4:-2507967 | None:intergenic |
AGATTCTGAAAAGGAGGAGT+AGG | 0.549609 | 6_4:-2507933 | None:intergenic |
TAAGATGAAGTATCAAACTT+GGG | 0.559208 | 6_4:+2512389 | Msa0970860:CDS |
ATGCATACCAACATGTCTCA+AGG | 0.563493 | 6_4:+2507621 | Msa0970860:CDS |
TGCAGTTGAAACCATATGAG+AGG | 0.566645 | 6_4:-2512718 | None:intergenic |
TGTTCAACTACATGTATGAA+AGG | 0.567684 | 6_4:+2513084 | Msa0970860:CDS |
GGCATTAGCATCAACATGAT+GGG | 0.570214 | 6_4:-2512856 | None:intergenic |
GGTATGCATGAGATTGAAGT+TGG | 0.570442 | 6_4:-2507607 | None:intergenic |
TGTTCATAGAAAATGGGTCG+TGG | 0.571043 | 6_4:+2507069 | Msa0970860:intron |
ACATTGCAAAAGAGAAAGGA+TGG | 0.582137 | 6_4:+2507138 | Msa0970860:CDS |
TACCATGTAGAGTCTAAGGC+AGG | 0.584231 | 6_4:+2512786 | Msa0970860:CDS |
TTGTAAGATTCATCCCAAGT+TGG | 0.584895 | 6_4:-2507435 | None:intergenic |
ATCTGTGGAATTCATTCCAA+AGG | 0.586943 | 6_4:+2512065 | Msa0970860:CDS |
CTCCCAACTTTGAAGGCCAA+GGG | 0.588006 | 6_4:+2512193 | Msa0970860:CDS |
AAAGATGATGTATCCAACTT+GGG | 0.588589 | 6_4:+2507422 | Msa0970860:CDS |
TCACTAATATTCATCAATGG+AGG | 0.597003 | 6_4:-2512645 | None:intergenic |
GTATTTCCGTTGTAATAGTG+TGG | 0.597710 | 6_4:-2512942 | None:intergenic |
GCTCCCAACCTTGAAGGCCA+AGG | 0.597883 | 6_4:+2507225 | Msa0970860:CDS |
TTTACAAAGTGCGTAAAGAG+AGG | 0.599078 | 6_4:+2507397 | Msa0970860:CDS |
TAAAATCAATCTGCTTGCAA+GGG | 0.599195 | 6_4:-2512827 | None:intergenic |
GCTCGGGAAACCATAGAAGA+AGG | 0.599676 | 6_4:-2512753 | None:intergenic |
AGGAAGAGCAGGCATAGCAA+TGG | 0.601693 | 6_4:-2512985 | None:intergenic |
AGGTGCAAAGAATTCTTCAA+AGG | 0.603453 | 6_4:+2512253 | Msa0970860:CDS |
TTTGCAAGATTCTGAAAAGG+AGG | 0.605154 | 6_4:-2507939 | None:intergenic |
TACCTGCCTTAGACTCTACA+TGG | 0.609420 | 6_4:-2512788 | None:intergenic |
TTAGCACCACACTATTACAA+CGG | 0.610413 | 6_4:+2512936 | Msa0970860:CDS |
TGCATACCAACATGTCTCAA+GGG | 0.610432 | 6_4:+2507622 | Msa0970860:CDS |
GGGTCGTGGAAGAGTATCTG+TGG | 0.635324 | 6_4:+2512050 | Msa0970860:intron |
GGTATGCCGAACCTGAAACA+TGG | 0.643156 | 6_4:+2512214 | Msa0970860:CDS |
TGGTTTAATAAAGAAAGCAA+AGG | 0.644031 | 6_4:+2507158 | Msa0970860:CDS |
ATGGCCGAAAGACACAAAAG+AGG | 0.657999 | 6_4:+2512233 | Msa0970860:CDS |
GAACTGGAAACCATAAGGGA+AGG | 0.661731 | 6_4:-2507726 | None:intergenic |
GCGAAAAGATGAATCGCACA+AGG | 0.697271 | 6_4:+2507539 | Msa0970860:CDS |
GCAGTTGAAACCATATGAGA+GGG | 0.704855 | 6_4:-2512717 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTATATAATTTATGTTTTTA+GGG | - | chr6_4:2505675-2505694 | None:intergenic | 10.0% |
!!! | ACTATATAATTTATGTTTTT+AGG | - | chr6_4:2505676-2505695 | None:intergenic | 10.0% |
!! | ATTCTTAAAATAAATAAGAT+AGG | - | chr6_4:2505865-2505884 | None:intergenic | 10.0% |
!!! | TCATATTTTTTATTTATTTG+TGG | + | chr6_4:2506135-2506154 | Msa0970860:intron | 10.0% |
!!! | TTATTATTATTTTGGATTTT+GGG | - | chr6_4:2506233-2506252 | None:intergenic | 10.0% |
!!! | ATTATTATTATTTTGGATTT+TGG | - | chr6_4:2506234-2506253 | None:intergenic | 10.0% |
!!! | CATAATCATTATTATTATTT+TGG | - | chr6_4:2506241-2506260 | None:intergenic | 10.0% |
!!! | AATCATTGTTTTTATTTATT+TGG | + | chr6_4:2506392-2506411 | Msa0970860:intron | 10.0% |
!!! | AGAAATTTTATTAATAAAAG+TGG | + | chr6_4:2506538-2506557 | Msa0970860:intron | 10.0% |
!!! | TAAGACAATTATTTTTATTT+TGG | + | chr6_4:2506614-2506633 | Msa0970860:intron | 10.0% |
!! | AATTATTTAGATTAATTTCT+TGG | - | chr6_4:2509685-2509704 | None:intergenic | 10.0% |
!!! | TATTTTTTTATTTCCTTTTT+TGG | + | chr6_4:2509895-2509914 | Msa0970860:intron | 10.0% |
!! | TATTGTGTAAAATTAATTTA+CGG | + | chr6_4:2510916-2510935 | Msa0970860:intron | 10.0% |
!! | GTAATTAAAAAGTAAATAAA+AGG | - | chr6_4:2511926-2511945 | None:intergenic | 10.0% |
!!! | TTTGTTTGTTTCTATTTTTT+TGG | + | chr6_4:2505568-2505587 | Msa0970860:intron | 15.0% |
!!! | TTGTGTTTATTTTGATTAAA+AGG | + | chr6_4:2505593-2505612 | Msa0970860:intron | 15.0% |
!!! | TAAAATTTCTTTTGTAGTTT+TGG | + | chr6_4:2505955-2505974 | Msa0970860:intron | 15.0% |
!! | ATAAGCAAAATAAAATACTA+TGG | + | chr6_4:2506316-2506335 | Msa0970860:intron | 15.0% |
!! | TAAGCAAAATAAAATACTAT+GGG | + | chr6_4:2506317-2506336 | Msa0970860:intron | 15.0% |
!! | AATAAAAATAATTGTCTTAG+AGG | - | chr6_4:2506613-2506632 | None:intergenic | 15.0% |
!!! | TATTTGAGTATTTATTTTCT+AGG | + | chr6_4:2506979-2506998 | Msa0970860:intron | 15.0% |
!! | ATTTGGTATAAAAAAAAACA+TGG | - | chr6_4:2507014-2507033 | None:intergenic | 15.0% |
!! | CAATAAACTAAACAAATAAA+TGG | - | chr6_4:2508133-2508152 | None:intergenic | 15.0% |
!! | TTAGCATTCTTAAAAAAAAT+AGG | - | chr6_4:2509097-2509116 | None:intergenic | 15.0% |
!!! | TCCATTTTTTATATTTATTC+AGG | + | chr6_4:2509298-2509317 | Msa0970860:intron | 15.0% |
!! | TCCTGAATAAATATAAAAAA+TGG | - | chr6_4:2509302-2509321 | None:intergenic | 15.0% |
!! | AAAATAATCAATCAAATTGA+AGG | - | chr6_4:2509881-2509900 | None:intergenic | 15.0% |
!!! | TTCATTTTCATTATATATAG+TGG | + | chr6_4:2509981-2510000 | Msa0970860:intron | 15.0% |
!! | AGAAAATAACATATAATTAG+AGG | + | chr6_4:2510004-2510023 | Msa0970860:intron | 15.0% |
!! | AAACAAAAATAAAATTATGC+TGG | - | chr6_4:2510141-2510160 | None:intergenic | 15.0% |
!!! | TTTGTGTATTTCAATAATTT+TGG | + | chr6_4:2510381-2510400 | Msa0970860:intron | 15.0% |
!!! | TTGTGTATTTCAATAATTTT+GGG | + | chr6_4:2510382-2510401 | Msa0970860:intron | 15.0% |
!! | CAAATTAAAAAAATTACGAA+AGG | - | chr6_4:2510412-2510431 | None:intergenic | 15.0% |
!! | AACAAAAACTTATATGTATA+TGG | - | chr6_4:2511355-2511374 | None:intergenic | 15.0% |
!! | GATATGACTAAATAGTTTAA+TGG | - | chr6_4:2505899-2505918 | None:intergenic | 20.0% |
!!! | GATACTTCATCAATTTTTTT+AGG | + | chr6_4:2506355-2506374 | Msa0970860:intron | 20.0% |
!!! | TTTTAAAAACAAATCGAGAA+AGG | + | chr6_4:2506515-2506534 | Msa0970860:intron | 20.0% |
!! | TTAGAGGATTATATATTTGT+TGG | + | chr6_4:2506703-2506722 | Msa0970860:intron | 20.0% |
!! | ATCAAATACTATATGTCTTT+AGG | + | chr6_4:2506735-2506754 | Msa0970860:intron | 20.0% |
!! | TCAAATACTATATGTCTTTA+GGG | + | chr6_4:2506736-2506755 | Msa0970860:intron | 20.0% |
!!! | TCTTTTATATTACCTTGTAA+AGG | + | chr6_4:2506826-2506845 | Msa0970860:intron | 20.0% |
!!! | CTTTTATATTACCTTGTAAA+GGG | + | chr6_4:2506827-2506846 | Msa0970860:intron | 20.0% |
!! | TTATAAATATACCCTTTACA+AGG | - | chr6_4:2506841-2506860 | None:intergenic | 20.0% |
!! | TATATTGTGTTCATAGAAAA+TGG | + | chr6_4:2507062-2507081 | Msa0970860:intron | 20.0% |
!! | ATATTGTGTTCATAGAAAAT+GGG | + | chr6_4:2507063-2507082 | Msa0970860:intron | 20.0% |
!! | AAAATATTCTTGAACATCAT+AGG | - | chr6_4:2507346-2507365 | None:intergenic | 20.0% |
!!! | TGATGTTCAAGAATATTTTA+AGG | + | chr6_4:2507347-2507366 | Msa0970860:CDS | 20.0% |
!! | TTATCACAAATATTCATCAA+TGG | - | chr6_4:2507660-2507679 | None:intergenic | 20.0% |
!! | CTTATACTAAAAAACTAGTA+TGG | - | chr6_4:2508072-2508091 | None:intergenic | 20.0% |
!!! | TTTGTTTAGTTTATTGAACT+AGG | + | chr6_4:2508137-2508156 | Msa0970860:intron | 20.0% |
!!! | TTGTTTAGTTTATTGAACTA+GGG | + | chr6_4:2508138-2508157 | Msa0970860:intron | 20.0% |
!!! | TTTTTTTTCTTGGTTTTAAG+TGG | + | chr6_4:2508167-2508186 | Msa0970860:intron | 20.0% |
!! | TATATATATATAATACAGGC+CGG | + | chr6_4:2508247-2508266 | Msa0970860:intron | 20.0% |
!!! | TTGCATAGTGTTTATTTTTA+TGG | - | chr6_4:2508488-2508507 | None:intergenic | 20.0% |
!! | AAAAAAAAGGAAAAAACATG+TGG | + | chr6_4:2508643-2508662 | Msa0970860:intron | 20.0% |
!! | ACAAAGATAATCTTAATCTT+TGG | - | chr6_4:2508792-2508811 | None:intergenic | 20.0% |
!!! | TTTAAGAGATTATTTTTTCG+TGG | - | chr6_4:2509576-2509595 | None:intergenic | 20.0% |
!! | TACTTTACATATCTAAACTT+TGG | - | chr6_4:2509658-2509677 | None:intergenic | 20.0% |
!! | AAGTTTAGATATGTAAAGTA+TGG | + | chr6_4:2509658-2509677 | Msa0970860:intron | 20.0% |
!!! | AGTATTCGATTCTTTTTTAA+TGG | - | chr6_4:2509792-2509811 | None:intergenic | 20.0% |
!! | CTAAAAGAAATGAAAATGAA+TGG | - | chr6_4:2509921-2509940 | None:intergenic | 20.0% |
!! | GTAAAATTTCTTTCATAGTT+AGG | + | chr6_4:2510234-2510253 | Msa0970860:intron | 20.0% |
!! | ACATAATTCAATGTAATTAC+AGG | - | chr6_4:2510581-2510600 | None:intergenic | 20.0% |
!!! | AATTTGTTTATAATAGTGAC+CGG | - | chr6_4:2510731-2510750 | None:intergenic | 20.0% |
!! | TTGTAATAAAAAGTAGCTAT+AGG | + | chr6_4:2511708-2511727 | Msa0970860:intron | 20.0% |
!! | ATTATAACACAACAATTGAT+AGG | + | chr6_4:2512277-2512296 | Msa0970860:CDS | 20.0% |
!! | AAAATATTCTTGAACATCAT+AGG | - | chr6_4:2507346-2507365 | None:intergenic | 20.0% |
!!! | TTCAAGAATATTTTAACGAA+AGG | + | chr6_4:2512319-2512338 | Msa0970860:CDS | 20.0% |
!! | TTATCACTAATATTCATCAA+TGG | - | chr6_4:2512651-2512670 | None:intergenic | 20.0% |
!! | TTGAAGAATATTTGTATCAT+AGG | - | chr6_4:2513057-2513076 | None:intergenic | 20.0% |
! | GATCTAAATTGTAGAATTAG+TGG | + | chr6_4:2505639-2505658 | Msa0970860:intron | 25.0% |
! | TGGATTAAATATTAGATTCG+AGG | + | chr6_4:2505975-2505994 | Msa0970860:intron | 25.0% |
!!! | AACCTCTTCTTTAATTTGTT+TGG | + | chr6_4:2506038-2506057 | Msa0970860:intron | 25.0% |
!! | TTGATGTATCTCGATAATTT+TGG | + | chr6_4:2506102-2506121 | Msa0970860:intron | 25.0% |
!! | TGATGTATCTCGATAATTTT+GGG | + | chr6_4:2506103-2506122 | Msa0970860:intron | 25.0% |
! | TAGTTTAGATCGTTGTAATT+TGG | - | chr6_4:2506573-2506592 | None:intergenic | 25.0% |
! | ATACTGTGGTATAGTATATT+TGG | - | chr6_4:2507031-2507050 | None:intergenic | 25.0% |
! | ATAATCAAGTATTCATACTG+TGG | - | chr6_4:2507045-2507064 | None:intergenic | 25.0% |
! | TGGTTTAATAAAGAAAGCAA+AGG | + | chr6_4:2507158-2507177 | Msa0970860:CDS | 25.0% |
!!! | TTCAAGAATATTTTAAGGAG+AGG | + | chr6_4:2507352-2507371 | Msa0970860:CDS | 25.0% |
!! | GATGAATCTTACAATTCTTT+TGG | + | chr6_4:2507444-2507463 | Msa0970860:CDS | 25.0% |
! | ATTTGTGATAAAAATCCCAT+AGG | + | chr6_4:2507669-2507688 | Msa0970860:CDS | 25.0% |
! | TTTGTGATAAAAATCCCATA+GGG | + | chr6_4:2507670-2507689 | Msa0970860:CDS | 25.0% |
!!! | TTCTTCTTCATATCGATTTT+GGG | - | chr6_4:2507828-2507847 | None:intergenic | 25.0% |
! | TTTCCATTGTAATAGTATGA+TGG | - | chr6_4:2507879-2507898 | None:intergenic | 25.0% |
! | TCCATAAAGTAGATATTCAT+GGG | - | chr6_4:2507970-2507989 | None:intergenic | 25.0% |
! | ATCCATAAAGTAGATATTCA+TGG | - | chr6_4:2507971-2507990 | None:intergenic | 25.0% |
! | TTGAATACTATCCATATCAT+AGG | - | chr6_4:2507994-2508013 | None:intergenic | 25.0% |
! | TTTATGGAATTGCTAAGTAT+TGG | - | chr6_4:2508472-2508491 | None:intergenic | 25.0% |
!!! | GTATGTGAGTTTAATTTTAG+TGG | + | chr6_4:2508747-2508766 | Msa0970860:intron | 25.0% |
!! | GATTATCTTTGTTTATGTCA+CGG | + | chr6_4:2508800-2508819 | Msa0970860:intron | 25.0% |
! | TCACAACATATTTCTCTATT+TGG | + | chr6_4:2508962-2508981 | Msa0970860:intron | 25.0% |
! | CACAACATATTTCTCTATTT+GGG | + | chr6_4:2508963-2508982 | Msa0970860:intron | 25.0% |
! | TTCTTAAAGAAATGAACATC+TGG | + | chr6_4:2509039-2509058 | Msa0970860:intron | 25.0% |
!!! | AGTTTTAACCTTTTGAAAGT+CGG | - | chr6_4:2509130-2509149 | None:intergenic | 25.0% |
! | ACTTTCAAAAGGTTAAAACT+TGG | + | chr6_4:2509130-2509149 | Msa0970860:intron | 25.0% |
! | AGACTTTGTCAAAAAGTTTA+AGG | - | chr6_4:2509196-2509215 | None:intergenic | 25.0% |
!!! | TTTTAGAAGTTTTCTTTCGT+TGG | + | chr6_4:2509357-2509376 | Msa0970860:intron | 25.0% |
!!! | TTTTTTTGTTGTTAACACTC+CGG | + | chr6_4:2509606-2509625 | Msa0970860:intron | 25.0% |
! | ATCTAAACTTTGGATTATCA+CGG | - | chr6_4:2509648-2509667 | None:intergenic | 25.0% |
!!! | ATCGATTTTTATGGTAACAA+TGG | - | chr6_4:2509764-2509783 | None:intergenic | 25.0% |
!!! | ATGGATTCAATCGATTTTTA+TGG | - | chr6_4:2509773-2509792 | None:intergenic | 25.0% |
! | ATAATCAATCAAATTGAAGG+TGG | - | chr6_4:2509878-2509897 | None:intergenic | 25.0% |
! | TGAAAATGAATCTCTCAAAA+AGG | - | chr6_4:2509971-2509990 | None:intergenic | 25.0% |
! | CATAGTTAGGATTAAATACT+AGG | + | chr6_4:2510247-2510266 | Msa0970860:intron | 25.0% |
! | CACAAACACTTCTTAAATTA+GGG | + | chr6_4:2510510-2510529 | Msa0970860:intron | 25.0% |
!!! | TATTTTTTCAGTATTTGCGT+TGG | - | chr6_4:2510558-2510577 | None:intergenic | 25.0% |
!! | AATTTGCTTATAATAGTGAC+CGG | + | chr6_4:2510840-2510859 | Msa0970860:intron | 25.0% |
!!! | AACTTGTAGTTCTAGAAAAT+TGG | + | chr6_4:2511453-2511472 | Msa0970860:intron | 25.0% |
! | ACAGTCTAATATTATGAGTT+GGG | - | chr6_4:2511625-2511644 | None:intergenic | 25.0% |
! | TACAGTCTAATATTATGAGT+TGG | - | chr6_4:2511626-2511645 | None:intergenic | 25.0% |
! | TGAATGTACACAAAATCAAA+TGG | - | chr6_4:2511825-2511844 | None:intergenic | 25.0% |
! | ATACCAAATATATCATACCA+TGG | + | chr6_4:2511992-2512011 | Msa0970860:intron | 25.0% |
! | ATACCATGGTATGATATATT+TGG | - | chr6_4:2511998-2512017 | None:intergenic | 25.0% |
!! | TTAAGATGAAGTATCAAACT+TGG | + | chr6_4:2512388-2512407 | Msa0970860:CDS | 25.0% |
!! | TAAGATGAAGTATCAAACTT+GGG | + | chr6_4:2512389-2512408 | Msa0970860:CDS | 25.0% |
! | ATTAGTGATAAAAACCCTTT+AGG | + | chr6_4:2512660-2512679 | Msa0970860:CDS | 25.0% |
! | TTAGTGATAAAAACCCTTTA+GGG | + | chr6_4:2512661-2512680 | Msa0970860:CDS | 25.0% |
!!! | AGGTTTGAAAGATTTTGAAA+AGG | - | chr6_4:2513008-2513027 | None:intergenic | 25.0% |
! | TTCATTAAGTAGATGTTCAT+GGG | - | chr6_4:2513033-2513052 | None:intergenic | 25.0% |
! | ATTCATTAAGTAGATGTTCA+TGG | - | chr6_4:2513034-2513053 | None:intergenic | 25.0% |
TCAAGATAAAATCATCGAGA+TGG | + | chr6_4:2505932-2505951 | Msa0970860:intron | 30.0% | |
CTCCAAACAAATTAAAGAAG+AGG | - | chr6_4:2506043-2506062 | None:intergenic | 30.0% | |
!!! | CTTTGATTGTGCGTTTTTTA+TGG | + | chr6_4:2506270-2506289 | Msa0970860:intron | 30.0% |
! | TTGTCATTTGAACAACTTAG+AGG | + | chr6_4:2506687-2506706 | Msa0970860:intron | 30.0% |
ATCTATGGAACTCATTCAAA+AGG | + | chr6_4:2507098-2507117 | Msa0970860:CDS | 30.0% | |
GATAACATTGCAAAAGAGAA+AGG | + | chr6_4:2507134-2507153 | Msa0970860:CDS | 30.0% | |
AACATCAACATCACAAAGAA+TGG | - | chr6_4:2507190-2507209 | None:intergenic | 30.0% | |
ACTATGACACAACAATTGAT+AGG | + | chr6_4:2507310-2507329 | Msa0970860:CDS | 30.0% | |
TAAAGATGATGTATCCAACT+TGG | + | chr6_4:2507421-2507440 | Msa0970860:CDS | 30.0% | |
AAAGATGATGTATCCAACTT+GGG | + | chr6_4:2507422-2507441 | Msa0970860:CDS | 30.0% | |
AACAATTGAGGTCATTTGTT+AGG | + | chr6_4:2507472-2507491 | Msa0970860:intron | 30.0% | |
TCAAGTAAGGAGAACTAATA+AGG | - | chr6_4:2507572-2507591 | None:intergenic | 30.0% | |
! | ATAAAAATCCCATAGGGTTT+TGG | + | chr6_4:2507676-2507695 | Msa0970860:CDS | 30.0% |
AACATTAGCATTAACCTGAT+GGG | - | chr6_4:2507796-2507815 | None:intergenic | 30.0% | |
TAACATTAGCATTAACCTGA+TGG | - | chr6_4:2507797-2507816 | None:intergenic | 30.0% | |
!!! | CTTCTTCTTCATATCGATTT+TGG | - | chr6_4:2507829-2507848 | None:intergenic | 30.0% |
CAAAATCGATATGAAGAAGA+AGG | + | chr6_4:2507827-2507846 | Msa0970860:CDS | 30.0% | |
TTGCCATCATACTATTACAA+TGG | + | chr6_4:2507873-2507892 | Msa0970860:CDS | 30.0% | |
AAAGTAGATATTCATGGGAT+AGG | - | chr6_4:2507965-2507984 | None:intergenic | 30.0% | |
TCCCATGAATATCTACTTTA+TGG | + | chr6_4:2507966-2507985 | Msa0970860:CDS | 30.0% | |
ACTTTATGGATCCTATGATA+TGG | + | chr6_4:2507980-2507999 | Msa0970860:CDS | 30.0% | |
TTTAAGTGGAACAAATAGCT+TGG | + | chr6_4:2508181-2508200 | Msa0970860:intron | 30.0% | |
! | ACTTTAGCAGTAAGCATTTT+TGG | - | chr6_4:2508512-2508531 | None:intergenic | 30.0% |
TATGTCACGGAACAAATATT+CGG | + | chr6_4:2508813-2508832 | Msa0970860:intron | 30.0% | |
!! | GTTTTAACCTTTTGAAAGTC+GGG | - | chr6_4:2509129-2509148 | None:intergenic | 30.0% |
TACGACTTTGATTCCAATTA+GGG | - | chr6_4:2509262-2509281 | None:intergenic | 30.0% | |
TTACGACTTTGATTCCAATT+AGG | - | chr6_4:2509263-2509282 | None:intergenic | 30.0% | |
GACAATGCATAAAATATGCA+AGG | + | chr6_4:2509528-2509547 | Msa0970860:intron | 30.0% | |
!!! | AAGAGATTATTTTTTCGTGG+TGG | - | chr6_4:2509573-2509592 | None:intergenic | 30.0% |
TGAAAATGAATGGCCAAAAA+AGG | - | chr6_4:2509911-2509930 | None:intergenic | 30.0% | |
GAAGAAGAAGAAGAAAAACA+AGG | + | chr6_4:2510088-2510107 | Msa0970860:intron | 30.0% | |
! | GTTTTGTAAAATCATCGAGA+TGG | + | chr6_4:2510212-2510231 | Msa0970860:intron | 30.0% |
AGGATTAAATACTAGGTTCA+AGG | + | chr6_4:2510254-2510273 | Msa0970860:intron | 30.0% | |
GAGATTATGCATTTCATTGA+TGG | - | chr6_4:2510295-2510314 | None:intergenic | 30.0% | |
! | TTGCAAAAATAGCTTTTGAG+AGG | + | chr6_4:2510432-2510451 | Msa0970860:intron | 30.0% |
!! | TAAGAAGTGTTTGTGCTTTA+TGG | - | chr6_4:2510505-2510524 | None:intergenic | 30.0% |
GCACAAACACTTCTTAAATT+AGG | + | chr6_4:2510509-2510528 | Msa0970860:intron | 30.0% | |
CATTCAATCAATGATGTATG+TGG | + | chr6_4:2510766-2510785 | Msa0970860:intron | 30.0% | |
! | TAAAAGCTCGACTTCTTTTT+CGG | - | chr6_4:2511329-2511348 | None:intergenic | 30.0% |
! | TCTTTTTGTCAGCATCATAA+TGG | + | chr6_4:2511376-2511395 | Msa0970860:intron | 30.0% |
TGGATTTGAACAAGTAGTAA+GGG | - | chr6_4:2511558-2511577 | None:intergenic | 30.0% | |
ATGGATTTGAACAAGTAGTA+AGG | - | chr6_4:2511559-2511578 | None:intergenic | 30.0% | |
TCTCTGCATCTAACAAATAA+TGG | - | chr6_4:2511578-2511597 | None:intergenic | 30.0% | |
TTGGGACACTAAAGATATAT+AGG | - | chr6_4:2511607-2511626 | None:intergenic | 30.0% | |
ATAATCATGTGTTCATACCA+TGG | - | chr6_4:2512012-2512031 | None:intergenic | 30.0% | |
GTATTGCAAAAGAGAAAGAT+TGG | + | chr6_4:2512105-2512124 | Msa0970860:CDS | 30.0% | |
TGGTTTGATGAAAAAAGTTG+AGG | + | chr6_4:2512125-2512144 | Msa0970860:CDS | 30.0% | |
GATGAATCTTTCAATTCTCT+TGG | + | chr6_4:2512411-2512430 | Msa0970860:CDS | 30.0% | |
AACAATTGAGGTTATTTGCT+AGG | + | chr6_4:2512439-2512458 | Msa0970860:CDS | 30.0% | |
CTAAAGATGAATATGCTAGA+AGG | + | chr6_4:2512492-2512511 | Msa0970860:CDS | 30.0% | |
TCACTAATATTCATCAATGG+AGG | - | chr6_4:2512648-2512667 | None:intergenic | 30.0% | |
!!! | ATAAAAACCCTTTAGGGTTT+TGG | + | chr6_4:2512667-2512686 | Msa0970860:CDS | 30.0% |
TAAAATCAATCTGCTTGCAA+GGG | - | chr6_4:2512830-2512849 | None:intergenic | 30.0% | |
TTAAAATCAATCTGCTTGCA+AGG | - | chr6_4:2512831-2512850 | None:intergenic | 30.0% | |
!! | GCAAGCAGATTGATTTTAAT+TGG | + | chr6_4:2512832-2512851 | Msa0970860:CDS | 30.0% |
TGTTCAACTACATGTATGAA+AGG | + | chr6_4:2513084-2513103 | Msa0970860:CDS | 30.0% | |
AAACGCACAATCAAAGTAGT+TGG | - | chr6_4:2506266-2506285 | None:intergenic | 35.0% | |
! | ATAATTGTCTTAGAGGTGTG+TGG | - | chr6_4:2506606-2506625 | None:intergenic | 35.0% |
! | TTCTCAAAAGTGCATTCTCA+TGG | - | chr6_4:2506774-2506793 | None:intergenic | 35.0% |
TGTAACTTATCATGCATGCA+AGG | - | chr6_4:2506919-2506938 | None:intergenic | 35.0% | |
ACATTGCAAAAGAGAAAGGA+TGG | + | chr6_4:2507138-2507157 | Msa0970860:CDS | 35.0% | |
!! | TTTCAGGTTCAACATATCCT+TGG | - | chr6_4:2507245-2507264 | None:intergenic | 35.0% |
GATATGTTGAACCTGAAACA+TGG | + | chr6_4:2507247-2507266 | Msa0970860:intron | 35.0% | |
TCTTGAACATCATAGGTCTT+AGG | - | chr6_4:2507339-2507358 | None:intergenic | 35.0% | |
TTTACAAAGTGCGTAAAGAG+AGG | + | chr6_4:2507397-2507416 | Msa0970860:CDS | 35.0% | |
TTGTAAGATTCATCCCAAGT+TGG | - | chr6_4:2507438-2507457 | None:intergenic | 35.0% | |
! | CTTTTGGATACGAACAATTG+AGG | + | chr6_4:2507460-2507479 | Msa0970860:CDS | 35.0% |
!! | GAGGTCATTTGTTAGGTTTT+TGG | + | chr6_4:2507479-2507498 | Msa0970860:intron | 35.0% |
! | AATTTTCCCTTGAGACATGT+TGG | - | chr6_4:2507631-2507650 | None:intergenic | 35.0% |
TTGTGAACTGGAAACCATAA+GGG | - | chr6_4:2507733-2507752 | None:intergenic | 35.0% | |
TTTGTGAACTGGAAACCATA+AGG | - | chr6_4:2507734-2507753 | None:intergenic | 35.0% | |
AATATGCTTGCAAGGGTAAT+AGG | - | chr6_4:2507760-2507779 | None:intergenic | 35.0% | |
TAGCATCAATATGCTTGCAA+GGG | - | chr6_4:2507767-2507786 | None:intergenic | 35.0% | |
TTAGCATCAATATGCTTGCA+AGG | - | chr6_4:2507768-2507787 | None:intergenic | 35.0% | |
! | TTTGCAAGATTCTGAAAAGG+AGG | - | chr6_4:2507942-2507961 | None:intergenic | 35.0% |
! | AGGTTTGCAAGATTCTGAAA+AGG | - | chr6_4:2507945-2507964 | None:intergenic | 35.0% |
ATGGATGTCTAATGCATTAC+AGG | - | chr6_4:2508053-2508072 | None:intergenic | 35.0% | |
!!! | AGGGTGACGATTTTTTTTCT+TGG | + | chr6_4:2508157-2508176 | Msa0970860:intron | 35.0% |
ATCCAGACTTTAGATACATG+TGG | + | chr6_4:2508283-2508302 | Msa0970860:intron | 35.0% | |
GTAAGAAACACAAAAACTCG+CGG | + | chr6_4:2508384-2508403 | Msa0970860:intron | 35.0% | |
TAAACTCACATACAACTGTG+AGG | - | chr6_4:2508740-2508759 | None:intergenic | 35.0% | |
TAACTAGACACAATGCCATA+TGG | + | chr6_4:2508929-2508948 | Msa0970860:intron | 35.0% | |
! | TGTGATGATAGTGAACCATA+TGG | - | chr6_4:2508947-2508966 | None:intergenic | 35.0% |
TGGGTTATTAACTAGTACCA+TGG | + | chr6_4:2508982-2509001 | Msa0970860:intron | 35.0% | |
CTAACAAATGACATACACCA+TGG | - | chr6_4:2509002-2509021 | None:intergenic | 35.0% | |
AGTTATACCCGACTTTCAAA+AGG | + | chr6_4:2509119-2509138 | Msa0970860:intron | 35.0% | |
! | AACCTATTTTCACCCCTAAT+TGG | + | chr6_4:2509246-2509265 | Msa0970860:intron | 35.0% |
TTCCAATTAGGGGTGAAAAT+AGG | - | chr6_4:2509251-2509270 | None:intergenic | 35.0% | |
ACGACTTTGATTCCAATTAG+GGG | - | chr6_4:2509261-2509280 | None:intergenic | 35.0% | |
! | TAAGCTTAGTTCAGTTGGTA+TGG | + | chr6_4:2509506-2509525 | Msa0970860:intron | 35.0% |
TGCATAAAATATGCAAGGTC+TGG | + | chr6_4:2509533-2509552 | Msa0970860:intron | 35.0% | |
GCATAAAATATGCAAGGTCT+GGG | + | chr6_4:2509534-2509553 | Msa0970860:intron | 35.0% | |
CATAAAATATGCAAGGTCTG+GGG | + | chr6_4:2509535-2509554 | Msa0970860:intron | 35.0% | |
!! | TTGAGTGTTGATACTATCTG+AGG | + | chr6_4:2510323-2510342 | Msa0970860:intron | 35.0% |
CTGCTTAGACAATAGAAAGA+TGG | - | chr6_4:2510482-2510501 | None:intergenic | 35.0% | |
! | CTTCTTAAATTAGGGTGTCT+CGG | + | chr6_4:2510518-2510537 | Msa0970860:intron | 35.0% |
ATGGATATAGACACGAACAT+CGG | - | chr6_4:2510660-2510679 | None:intergenic | 35.0% | |
TGTCTATATCCATGCTTCAT+AGG | + | chr6_4:2510667-2510686 | Msa0970860:intron | 35.0% | |
TAACTCATATATACTCCCTC+CGG | + | chr6_4:2510709-2510728 | Msa0970860:intron | 35.0% | |
TGTTTATAATAGTGACCGGA+GGG | - | chr6_4:2510727-2510746 | None:intergenic | 35.0% | |
TTGTTTATAATAGTGACCGG+AGG | - | chr6_4:2510728-2510747 | None:intergenic | 35.0% | |
! | CGAAGTTTTTCATATGCAAG+AGG | + | chr6_4:2511491-2511510 | Msa0970860:intron | 35.0% |
AACTCCTAACCACTTGTTTA+AGG | + | chr6_4:2511523-2511542 | Msa0970860:intron | 35.0% | |
ACTCCTAACCACTTGTTTAA+GGG | + | chr6_4:2511524-2511543 | Msa0970860:intron | 35.0% | |
TAGAGTTGTCAAGTTCTCAA+AGG | - | chr6_4:2511649-2511668 | None:intergenic | 35.0% | |
TATATTGTGTTCGCAGCAAA+TGG | + | chr6_4:2512029-2512048 | Msa0970860:intron | 35.0% | |
ATATTGTGTTCGCAGCAAAT+GGG | + | chr6_4:2512030-2512049 | Msa0970860:intron | 35.0% | |
ATCTGTGGAATTCATTCCAA+AGG | + | chr6_4:2512065-2512084 | Msa0970860:CDS | 35.0% | |
TCATTCCAAAGGAGAAATCT+AGG | + | chr6_4:2512076-2512095 | Msa0970860:CDS | 35.0% | |
ATCTTCCTAGATTTCTCCTT+TGG | - | chr6_4:2512084-2512103 | None:intergenic | 35.0% | |
AGGTGCAAAGAATTCTTCAA+AGG | + | chr6_4:2507286-2507305 | Msa0970860:intron | 35.0% | |
CTTGGATTTGAGTCTAAGTA+GGG | - | chr6_4:2512579-2512598 | None:intergenic | 35.0% | |
ACTTGGATTTGAGTCTAAGT+AGG | - | chr6_4:2512580-2512599 | None:intergenic | 35.0% | |
!!! | CATACCGATTTTGAGATCAT+TGG | - | chr6_4:2512883-2512902 | None:intergenic | 35.0% |
TTAGCACCACACTATTACAA+CGG | + | chr6_4:2512936-2512955 | Msa0970860:CDS | 35.0% | |
GTATTTCCGTTGTAATAGTG+TGG | - | chr6_4:2512945-2512964 | None:intergenic | 35.0% | |
!! | AGATTTTGAAAAGGAAGAGC+AGG | - | chr6_4:2512999-2513018 | None:intergenic | 35.0% |
TAAGTAGATGTTCATGGGAT+AGG | - | chr6_4:2513028-2513047 | None:intergenic | 35.0% | |
GCTGTGAGCATAACTCAATT+AGG | + | chr6_4:2505824-2505843 | Msa0970860:intron | 40.0% | |
CTTCTTCTGATCTCCATTAG+TGG | + | chr6_4:2506008-2506027 | Msa0970860:intron | 40.0% | |
! | TTGTTTGGAGCCTCTAGTTT+AGG | + | chr6_4:2506053-2506072 | Msa0970860:intron | 40.0% |
! | TGTTTGGAGCCTCTAGTTTA+GGG | + | chr6_4:2506054-2506073 | Msa0970860:intron | 40.0% |
TCACATGAAGTAGCATCTAG+AGG | - | chr6_4:2506446-2506465 | None:intergenic | 40.0% | |
GCATTCTCATGGTATGAGTT+GGG | - | chr6_4:2506763-2506782 | None:intergenic | 40.0% | |
TGCATTCTCATGGTATGAGT+TGG | - | chr6_4:2506764-2506783 | None:intergenic | 40.0% | |
TGTTCATAGAAAATGGGTCG+TGG | + | chr6_4:2507069-2507088 | Msa0970860:intron | 40.0% | |
TTGTCTTTAGGCCATGTTTC+AGG | - | chr6_4:2507261-2507280 | None:intergenic | 40.0% | |
ATGGCCTAAAGACAAAAGAG+AGG | + | chr6_4:2507266-2507285 | Msa0970860:intron | 40.0% | |
! | TGCACCTCTCTTTTGTCTTT+AGG | - | chr6_4:2507273-2507292 | None:intergenic | 40.0% |
! | CCTGAATTTGAGGTCAAGTA+AGG | - | chr6_4:2507585-2507604 | None:intergenic | 40.0% |
CCTTACTTGACCTCAAATTC+AGG | + | chr6_4:2507582-2507601 | Msa0970860:CDS | 40.0% | |
!! | GAAGTTGGTACCTGAATTTG+AGG | - | chr6_4:2507595-2507614 | None:intergenic | 40.0% |
GGTATGCATGAGATTGAAGT+TGG | - | chr6_4:2507610-2507629 | None:intergenic | 40.0% | |
ATGCATACCAACATGTCTCA+AGG | + | chr6_4:2507621-2507640 | Msa0970860:CDS | 40.0% | |
TGCATACCAACATGTCTCAA+GGG | + | chr6_4:2507622-2507641 | Msa0970860:CDS | 40.0% | |
TGAATTGGCCAAAACCCTAT+GGG | - | chr6_4:2507687-2507706 | None:intergenic | 40.0% | |
TTGAATTGGCCAAAACCCTA+TGG | - | chr6_4:2507688-2507707 | None:intergenic | 40.0% | |
!! | AGGGTTTTGGCCAATTCAAT+TGG | + | chr6_4:2507689-2507708 | Msa0970860:CDS | 40.0% |
! | GAGCTTTGTGCCAATTGAAT+TGG | - | chr6_4:2507702-2507721 | None:intergenic | 40.0% |
! | GTAATAGGAGCTTTGTGAAC+TGG | - | chr6_4:2507745-2507764 | None:intergenic | 40.0% |
GCAAGCATATTGATGCTAAC+TGG | + | chr6_4:2507769-2507788 | Msa0970860:intron | 40.0% | |
! | AGATTCTGAAAAGGAGGAGT+AGG | - | chr6_4:2507936-2507955 | None:intergenic | 40.0% |
CAACTGTTCAACTCCATGAA+TGG | + | chr6_4:2508017-2508036 | Msa0970860:CDS | 40.0% | |
! | CTCCACATGTATCTAAAGTC+TGG | - | chr6_4:2508288-2508307 | None:intergenic | 40.0% |
!! | GGAATTGCTAAGTATTGGCT+TGG | - | chr6_4:2508467-2508486 | None:intergenic | 40.0% |
CATCGTAAGCTTAGTTCAGT+TGG | + | chr6_4:2509501-2509520 | Msa0970860:intron | 40.0% | |
!!! | TTATTTTTTCGTGGTGGCCA+GGG | - | chr6_4:2509567-2509586 | None:intergenic | 40.0% |
!!! | ATTATTTTTTCGTGGTGGCC+AGG | - | chr6_4:2509568-2509587 | None:intergenic | 40.0% |
! | TATCTGAGGCTTCGATTTAG+AGG | + | chr6_4:2510337-2510356 | Msa0970860:intron | 40.0% |
TATTAACTGTGTCTGCGTGT+CGG | + | chr6_4:2510614-2510633 | Msa0970860:intron | 40.0% | |
TTGCTTATAATAGTGACCGG+AGG | + | chr6_4:2510843-2510862 | Msa0970860:intron | 40.0% | |
TGCTTATAATAGTGACCGGA+GGG | + | chr6_4:2510844-2510863 | Msa0970860:intron | 40.0% | |
CTCCTAACCACTTGTTTAAG+GGG | + | chr6_4:2511525-2511544 | Msa0970860:intron | 40.0% | |
AACCCCTTAAACAAGTGGTT+AGG | - | chr6_4:2511530-2511549 | None:intergenic | 40.0% | |
AGTTCAACCCCTTAAACAAG+TGG | - | chr6_4:2511535-2511554 | None:intergenic | 40.0% | |
AGAGCAGCAAGACAAATGAA+AGG | - | chr6_4:2511857-2511876 | None:intergenic | 40.0% | |
!! | AGCATCGACATCACAAAGAA+TGG | - | chr6_4:2512157-2512176 | None:intergenic | 40.0% |
CTTTATGCTCCCAACTTTGA+AGG | + | chr6_4:2512186-2512205 | Msa0970860:CDS | 40.0% | |
! | TGCACCTCTTTTGTGTCTTT+CGG | - | chr6_4:2512240-2512259 | None:intergenic | 40.0% |
AAACTTCTCTTTGCGCACTT+TGG | - | chr6_4:2512370-2512389 | None:intergenic | 40.0% | |
CTCTTGGAGATGAACAATTG+AGG | + | chr6_4:2512427-2512446 | Msa0970860:CDS | 40.0% | |
! | GAGGTTATTTGCTAGGATCT+TGG | + | chr6_4:2512446-2512465 | Msa0970860:CDS | 40.0% |
TATGCTAGAAGGAGATCTTC+TGG | + | chr6_4:2512503-2512522 | Msa0970860:CDS | 40.0% | |
ATGCTAGAAGGAGATCTTCT+GGG | + | chr6_4:2512504-2512523 | Msa0970860:CDS | 40.0% | |
!!! | TGTTGTTTTGCACGAGATTG+AGG | - | chr6_4:2512605-2512624 | None:intergenic | 40.0% |
TAAGTGGCCAAAACCCTAAA+GGG | - | chr6_4:2512677-2512696 | None:intergenic | 40.0% | |
ATAAGTGGCCAAAACCCTAA+AGG | - | chr6_4:2512678-2512697 | None:intergenic | 40.0% | |
!! | AGGGTTTTGGCCACTTATAT+CGG | + | chr6_4:2512680-2512699 | Msa0970860:CDS | 40.0% |
GCAGTTGAAACCATATGAGA+GGG | - | chr6_4:2512720-2512739 | None:intergenic | 40.0% | |
TGCAGTTGAAACCATATGAG+AGG | - | chr6_4:2512721-2512740 | None:intergenic | 40.0% | |
AAGCTCTCAACCTTCTTCTA+TGG | + | chr6_4:2512743-2512762 | Msa0970860:CDS | 40.0% | |
CTTCTACCATGTAGAGTCTA+AGG | + | chr6_4:2512782-2512801 | Msa0970860:CDS | 40.0% | |
GGCATTAGCATCAACATGAT+GGG | - | chr6_4:2512859-2512878 | None:intergenic | 40.0% | |
TGGCATTAGCATCAACATGA+TGG | - | chr6_4:2512860-2512879 | None:intergenic | 40.0% | |
GCCACCAATGATCTCAAAAT+CGG | + | chr6_4:2512876-2512895 | Msa0970860:CDS | 40.0% | |
!!! | ACCGATTTTGAGATCATTGG+TGG | - | chr6_4:2512880-2512899 | None:intergenic | 40.0% |
! | GTTTGGAGCCTCTAGTTTAG+GGG | + | chr6_4:2506055-2506074 | Msa0970860:intron | 45.0% |
CATATGCACCCCTAAACTAG+AGG | - | chr6_4:2506066-2506085 | None:intergenic | 45.0% | |
TTGGCTACAAGCAAGTGCTA+TGG | + | chr6_4:2506411-2506430 | Msa0970860:intron | 45.0% | |
TGGCTACAAGCAAGTGCTAT+GGG | + | chr6_4:2506412-2506431 | Msa0970860:intron | 45.0% | |
GGGTCGTGGAAGAATATCTA+TGG | + | chr6_4:2507083-2507102 | Msa0970860:CDS | 45.0% | |
! | TATCCTTGGCCTTCAAGGTT+GGG | - | chr6_4:2507231-2507250 | None:intergenic | 45.0% |
! | ATATCCTTGGCCTTCAAGGT+TGG | - | chr6_4:2507232-2507251 | None:intergenic | 45.0% |
! | CAACATATCCTTGGCCTTCA+AGG | - | chr6_4:2507236-2507255 | None:intergenic | 45.0% |
GCGAAAAGATGAATCGCACA+AGG | + | chr6_4:2507539-2507558 | Msa0970860:CDS | 45.0% | |
AAGCTCTCAACCTTCCCTTA+TGG | + | chr6_4:2507716-2507735 | Msa0970860:CDS | 45.0% | |
GAACTGGAAACCATAAGGGA+AGG | - | chr6_4:2507729-2507748 | None:intergenic | 45.0% | |
AGGCTACTTCGTTCCATTCA+TGG | - | chr6_4:2508033-2508052 | None:intergenic | 45.0% | |
CAGCAGCACACCAAAACTAT+GGG | + | chr6_4:2508549-2508568 | Msa0970860:intron | 45.0% | |
AGCAGCACACCAAAACTATG+GGG | + | chr6_4:2508550-2508569 | Msa0970860:intron | 45.0% | |
CACACCAAAACTATGGGGAT+GGG | + | chr6_4:2508555-2508574 | Msa0970860:intron | 45.0% | |
! | CAATCCCATCCCCATAGTTT+TGG | - | chr6_4:2508562-2508581 | None:intergenic | 45.0% |
GGGATTGAAAGTTGAGAGAG+AGG | + | chr6_4:2508575-2508594 | Msa0970860:intron | 45.0% | |
TTGAGAGAGAGGATGAGAAG+AGG | + | chr6_4:2508586-2508605 | Msa0970860:intron | 45.0% | |
TGAGAGAGAGGATGAGAAGA+GGG | + | chr6_4:2508587-2508606 | Msa0970860:intron | 45.0% | |
TCGTGATACGGATTCGAACT+CGG | + | chr6_4:2508712-2508731 | Msa0970860:intron | 45.0% | |
GACTGCTTACCTATGAAGCA+TGG | - | chr6_4:2510679-2510698 | None:intergenic | 45.0% | |
! | TACCCTTGGCCTTCAAAGTT+GGG | - | chr6_4:2512198-2512217 | None:intergenic | 45.0% |
! | ATACCCTTGGCCTTCAAAGT+TGG | - | chr6_4:2512199-2512218 | None:intergenic | 45.0% |
!! | TTTCGGCCATGTTTCAGGTT+CGG | - | chr6_4:2512223-2512242 | None:intergenic | 45.0% |
ATGGCCGAAAGACACAAAAG+AGG | + | chr6_4:2512233-2512252 | Msa0970860:CDS | 45.0% | |
!! | GGGTTTTGGCCACTTATATC+GGG | + | chr6_4:2512681-2512700 | Msa0970860:CDS | 45.0% |
! | GAGCTTTGACCCGATATAAG+TGG | - | chr6_4:2512693-2512712 | None:intergenic | 45.0% |
AAGCTCTCAACCCTCTCATA+TGG | + | chr6_4:2512707-2512726 | Msa0970860:CDS | 45.0% | |
! | TACCATGTAGAGTCTAAGGC+AGG | + | chr6_4:2512786-2512805 | Msa0970860:CDS | 45.0% |
TACCTGCCTTAGACTCTACA+TGG | - | chr6_4:2512791-2512810 | None:intergenic | 45.0% | |
!! | TATATATATATATATAATAC+AGG | + | chr6_4:2508243-2508262 | Msa0970860:intron | 5.0% |
!! | CAATTATATAAAAAAAAAAA+AGG | + | chr6_4:2508630-2508649 | Msa0970860:intron | 5.0% |
GAGGTTGCACACTCCACTAA+TGG | - | chr6_4:2506024-2506043 | None:intergenic | 50.0% | |
! | CTTCAAGGTTGGGAGCATAC+AGG | - | chr6_4:2507221-2507240 | None:intergenic | 50.0% |
CTGTATGCTCCCAACCTTGA+AGG | + | chr6_4:2507219-2507238 | Msa0970860:CDS | 50.0% | |
TGATGCTAACTGGACCCATC+AGG | + | chr6_4:2507779-2507798 | Msa0970860:intron | 50.0% | |
GGAGGAGTAGGCATAGCAAT+AGG | - | chr6_4:2507924-2507943 | None:intergenic | 50.0% | |
TATAATACAGGCCGGACGTC+AGG | + | chr6_4:2508255-2508274 | Msa0970860:intron | 50.0% | |
ATAATACAGGCCGGACGTCA+GGG | + | chr6_4:2508256-2508275 | Msa0970860:intron | 50.0% | |
GCAGCAGCACACCAAAACTA+TGG | + | chr6_4:2508548-2508567 | Msa0970860:intron | 50.0% | |
GCACACCAAAACTATGGGGA+TGG | + | chr6_4:2508554-2508573 | Msa0970860:intron | 50.0% | |
! | TGTGGAGCTTTAGCTCCACA+TGG | + | chr6_4:2508661-2508680 | Msa0970860:intron | 50.0% |
CGTGATACGGATTCGAACTC+GGG | + | chr6_4:2508713-2508732 | Msa0970860:intron | 50.0% | |
ACACTCCGGTCTCAAGAGAA+AGG | + | chr6_4:2509620-2509639 | Msa0970860:intron | 50.0% | |
CACTCCGGTCTCAAGAGAAA+GGG | + | chr6_4:2509621-2509640 | Msa0970860:intron | 50.0% | |
ACACACACACATACTCCCTC+CGG | - | chr6_4:2510862-2510881 | None:intergenic | 50.0% | |
! | CTCCCAACTTTGAAGGCCAA+GGG | + | chr6_4:2512193-2512212 | Msa0970860:CDS | 50.0% |
!! | TTTCAGGTTCGGCATACCCT+TGG | - | chr6_4:2512212-2512231 | None:intergenic | 50.0% |
GGTATGCCGAACCTGAAACA+TGG | + | chr6_4:2512214-2512233 | Msa0970860:CDS | 50.0% | |
GTGTCTTTCGGCCATGTTTC+AGG | - | chr6_4:2512228-2512247 | None:intergenic | 50.0% | |
TGCACGAGATTGAGGCTACT+TGG | - | chr6_4:2512597-2512616 | None:intergenic | 50.0% | |
GCTCGGGAAACCATAGAAGA+AGG | - | chr6_4:2512756-2512775 | None:intergenic | 50.0% | |
ATGGTAGAAGCTCTGTGCTC+GGG | - | chr6_4:2512772-2512791 | None:intergenic | 50.0% | |
CATGGTAGAAGCTCTGTGCT+CGG | - | chr6_4:2512773-2512792 | None:intergenic | 50.0% | |
GGAAGAGCAGGCATAGCAAT+GGG | - | chr6_4:2512987-2513006 | None:intergenic | 50.0% | |
AGGAAGAGCAGGCATAGCAA+TGG | - | chr6_4:2512988-2513007 | None:intergenic | 50.0% | |
TAATACAGGCCGGACGTCAG+GGG | + | chr6_4:2508257-2508276 | Msa0970860:intron | 55.0% | |
!!! | GGTGTGCTGCTGCTTTTGTG+TGG | - | chr6_4:2508541-2508560 | None:intergenic | 55.0% |
!! | GGATGCACATTGGTGCCATG+TGG | - | chr6_4:2508679-2508698 | None:intergenic | 55.0% |
CGAATCCGTATCACGACGTC+CGG | - | chr6_4:2508708-2508727 | None:intergenic | 55.0% | |
! | AAGGTCTGGGGTTCAAACCC+TGG | + | chr6_4:2509547-2509566 | Msa0970860:intron | 55.0% |
CGGTCCCTTTCTCTTGAGAC+CGG | - | chr6_4:2509628-2509647 | None:intergenic | 55.0% | |
GGAGAGACACAGTGTGTGAG+AGG | + | chr6_4:2510025-2510044 | Msa0970860:intron | 55.0% | |
TGTTCGCAGCAAATGGGTCG+TGG | + | chr6_4:2512036-2512055 | Msa0970860:intron | 55.0% | |
!! | GGGTCGTGGAAGAGTATCTG+TGG | + | chr6_4:2512050-2512069 | Msa0970860:intron | 55.0% |
! | GCTCCCAACTTTGAAGGCCA+AGG | + | chr6_4:2512192-2512211 | Msa0970860:CDS | 55.0% |
GCTCCCAACCTTGAAGGCCA+AGG | + | chr6_4:2507225-2507244 | Msa0970860:CDS | 60.0% | |
CCAATGTGCATCCCCCCTGC+CGG | + | chr6_4:2508686-2508705 | Msa0970860:intron | 65.0% | |
TATCACGACGTCCGGCAGGG+GGG | - | chr6_4:2508700-2508719 | None:intergenic | 65.0% | |
GTATCACGACGTCCGGCAGG+GGG | - | chr6_4:2508701-2508720 | None:intergenic | 65.0% | |
CGTATCACGACGTCCGGCAG+GGG | - | chr6_4:2508702-2508721 | None:intergenic | 65.0% | |
CCGTATCACGACGTCCGGCA+GGG | - | chr6_4:2508703-2508722 | None:intergenic | 65.0% | |
CCCTGCCGGACGTCGTGATA+CGG | + | chr6_4:2508700-2508719 | Msa0970860:intron | 65.0% | |
TCCGTATCACGACGTCCGGC+AGG | - | chr6_4:2508704-2508723 | None:intergenic | 65.0% | |
TACAGGCCGGACGTCAGGGG+CGG | + | chr6_4:2508260-2508279 | Msa0970860:intron | 70.0% | |
CTGGATCCGCCCCTGACGTC+CGG | - | chr6_4:2508269-2508288 | None:intergenic | 70.0% | |
CCGGCAGGGGGGATGCACAT+TGG | - | chr6_4:2508689-2508708 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 2505550 | 2513112 | 2505550 | ID=Msa0970860;Name=Msa0970860 |
chr6_4 | mRNA | 2505550 | 2513112 | 2505550 | ID=Msa0970860-mRNA-1;Parent=Msa0970860;Name=Msa0970860-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|0.71|0.33|0.28|7|0|639 |
chr6_4 | exon | 2505550 | 2505554 | 2505550 | ID=Msa0970860-mRNA-1:exon:1194;Parent=Msa0970860-mRNA-1 |
chr6_4 | exon | 2505990 | 2505996 | 2505990 | ID=Msa0970860-mRNA-1:exon:1195;Parent=Msa0970860-mRNA-1 |
chr6_4 | exon | 2507078 | 2507251 | 2507078 | ID=Msa0970860-mRNA-1:exon:1196;Parent=Msa0970860-mRNA-1 |
chr6_4 | exon | 2507288 | 2507481 | 2507288 | ID=Msa0970860-mRNA-1:exon:1197;Parent=Msa0970860-mRNA-1 |
chr6_4 | exon | 2507494 | 2507737 | 2507494 | ID=Msa0970860-mRNA-1:exon:1198;Parent=Msa0970860-mRNA-1 |
chr6_4 | exon | 2507801 | 2508045 | 2507801 | ID=Msa0970860-mRNA-1:exon:1199;Parent=Msa0970860-mRNA-1 |
chr6_4 | exon | 2512062 | 2513112 | 2512062 | ID=Msa0970860-mRNA-1:exon:1200;Parent=Msa0970860-mRNA-1 |
chr6_4 | CDS | 2505550 | 2505554 | 2505550 | ID=Msa0970860-mRNA-1:cds;Parent=Msa0970860-mRNA-1 |
chr6_4 | CDS | 2505990 | 2505996 | 2505990 | ID=Msa0970860-mRNA-1:cds;Parent=Msa0970860-mRNA-1 |
chr6_4 | CDS | 2507078 | 2507251 | 2507078 | ID=Msa0970860-mRNA-1:cds;Parent=Msa0970860-mRNA-1 |
chr6_4 | CDS | 2507288 | 2507481 | 2507288 | ID=Msa0970860-mRNA-1:cds;Parent=Msa0970860-mRNA-1 |
chr6_4 | CDS | 2507494 | 2507737 | 2507494 | ID=Msa0970860-mRNA-1:cds;Parent=Msa0970860-mRNA-1 |
chr6_4 | CDS | 2507801 | 2508045 | 2507801 | ID=Msa0970860-mRNA-1:cds;Parent=Msa0970860-mRNA-1 |
chr6_4 | CDS | 2512062 | 2513112 | 2512062 | ID=Msa0970860-mRNA-1:cds;Parent=Msa0970860-mRNA-1 |
Gene Sequence |
Protein sequence |