AlfalfaGEDB | Msa0970910

M. sativa cultivar zhongmu-4 / Msa0970910

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0970910	XP_003618177.1	57.471	348	84	6	6	290	1	347	9.31e-115	357
Msa0970910	XP_003618177.1	82.865	356	50	4	286	639	1	347	0.0	581

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0970910	sp\|Q9FIM0\|AGL82_ARATH	34.507	142	88	3	291	430	6	144	1.43e-15	81.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0970910	G7KHI3	57.471	348	84	6	6	290	1	347	4.44e-115	357
Msa0970910	G7KHI3	82.865	356	50	4	286	639	1	347	0.0	581

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TFs/TRs:

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Gene ID	Type	Classification
Msa0970910	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0970910	MtrunA17_Chr6g0449861	82.865	356	50	4	286	639	9	355	0.0	580
Msa0970910	MtrunA17_Chr6g0449861	57.143	350	86	6	4	290	7	355	7.60e-119	358
Msa0970910	MtrunA17_Chr6g0449851	84.127	315	20	3	6	290	1	315	0.0	528
Msa0970910	MtrunA17_Chr6g0449851	61.891	349	92	5	286	633	1	309	3.53e-142	416
Msa0970910	MtrunA17_Chr6g0457851	64.917	362	111	3	282	639	7	356	2.12e-159	461
Msa0970910	MtrunA17_Chr6g0457851	56.447	349	91	4	3	290	8	356	3.90e-122	366
Msa0970910	MtrunA17_Chr1g0212151	59.834	361	112	5	286	632	1	342	2.10e-132	392
Msa0970910	MtrunA17_Chr1g0212151	52.809	356	88	8	6	290	1	347	2.60e-107	328
Msa0970910	MtrunA17_Chr1g0212471	31.844	179	121	1	286	464	1	178	9.31e-28	110
Msa0970910	MtrunA17_Chr1g0212471	35.256	156	86	2	6	146	1	156	1.15e-23	99.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0970910	AT5G55690.1	32.700	263	127	12	291	542	6	229	1.58e-22	98.6
Msa0970910	AT5G55690.1	38.710	124	56	2	6	116	1	117	2.25e-16	80.5
Msa0970910	AT5G55690.2	32.700	263	127	12	291	542	6	229	1.58e-22	98.6
Msa0970910	AT5G55690.2	38.710	124	56	2	6	116	1	117	2.25e-16	80.5
Msa0970910	AT5G58890.1	34.507	142	88	3	291	430	6	144	1.46e-16	81.3
Msa0970910	AT3G18650.1	37.037	135	71	5	301	429	31	157	9.84e-14	73.9
Msa0970910	AT3G18650.1	35.200	125	69	4	21	134	31	154	1.91e-11	66.6
Msa0970910	AT1G22590.2	29.193	161	103	4	286	441	1	155	1.30e-12	66.6
Msa0970910	AT3G57230.1	27.152	151	92	6	6	146	1	143	4.52e-12	67.0
Msa0970910	AT3G57230.4	27.152	151	92	6	6	146	1	143	4.52e-12	67.0

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Find 116 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATTCTTGAACATCAT+AGG	0.366937	6_4:-2565596	None:intergenic
AAAATATTCTTGAACATCAT+AGG	0.416188	6_4:-2560624	None:intergenic
AAACTTCTCTTTGCGCACTT+TGG	0.438281	6_4:-2565653	None:intergenic
AAAGATGATGTATCCAACTT+GGG	0.588589	6_4:+2560703	Msa0970910:CDS
AAAGTAGATATTCATGGGAT+AGG	0.486977	6_4:-2561243	None:intergenic
AACAATTGAGGTTATTTGCT+AGG	0.476502	6_4:+2565725	Msa0970910:CDS
AACATCAACATCACAAAGAA+TGG	0.436469	6_4:-2560468	None:intergenic
AAGCTCTCAACCCTCTCATA+TGG	0.482453	6_4:+2565993	Msa0970910:CDS
AAGCTCTCAACCTTCCCTTA+TGG	0.354140	6_4:+2560997	Msa0970910:CDS
AAGCTCTCAACCTTCTTCTA+TGG	0.280995	6_4:+2566029	Msa0970910:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAGATAAAATCATCGAGA+TGG	+	chr6_4:2559211-2559230	Msa0970910:intron	30.0%
CTCCAAACAAATTAAAGAAG+AGG	-	chr6_4:2559322-2559341	None:intergenic	30.0%
ATCTATGGAACTCATTCAAA+AGG	+	chr6_4:2560379-2560398	Msa0970910:CDS	30.0%
GATAACATTGCAAAAGAGAA+AGG	+	chr6_4:2560415-2560434	Msa0970910:CDS	30.0%
AACATCAACATCACAAAGAA+TGG	-	chr6_4:2560471-2560490	None:intergenic	30.0%
ACTATGACACAACAATTGAT+AGG	+	chr6_4:2560591-2560610	Msa0970910:CDS	30.0%
TAAAGATGATGTATCCAACT+TGG	+	chr6_4:2560702-2560721	Msa0970910:CDS	30.0%
AAAGATGATGTATCCAACTT+GGG	+	chr6_4:2560703-2560722	Msa0970910:CDS	30.0%
AACAATTGAGGTCATTTGTT+AGG	+	chr6_4:2560753-2560772	Msa0970910:intron	30.0%
TCAAGTAAGGAGAACTAATA+AGG	-	chr6_4:2560853-2560872	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	2558829	2566398	2558829	ID=Msa0970910;Name=Msa0970910
chr6_4	mRNA	2558829	2566398	2558829	ID=Msa0970910-mRNA-1;Parent=Msa0970910;Name=Msa0970910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|0.71\|0.33\|0.28\|7\|0\|639
chr6_4	exon	2558829	2558833	2558829	ID=Msa0970910-mRNA-1:exon:1201;Parent=Msa0970910-mRNA-1
chr6_4	exon	2559269	2559275	2559269	ID=Msa0970910-mRNA-1:exon:1202;Parent=Msa0970910-mRNA-1
chr6_4	exon	2560359	2560532	2560359	ID=Msa0970910-mRNA-1:exon:1203;Parent=Msa0970910-mRNA-1
chr6_4	exon	2560569	2560762	2560569	ID=Msa0970910-mRNA-1:exon:1204;Parent=Msa0970910-mRNA-1
chr6_4	exon	2560775	2561018	2560775	ID=Msa0970910-mRNA-1:exon:1205;Parent=Msa0970910-mRNA-1
chr6_4	exon	2561082	2561326	2561082	ID=Msa0970910-mRNA-1:exon:1206;Parent=Msa0970910-mRNA-1
chr6_4	exon	2565348	2566398	2565348	ID=Msa0970910-mRNA-1:exon:1207;Parent=Msa0970910-mRNA-1
chr6_4	CDS	2558829	2558833	2558829	ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1
chr6_4	CDS	2559269	2559275	2559269	ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1
chr6_4	CDS	2560359	2560532	2560359	ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1
chr6_4	CDS	2560569	2560762	2560569	ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1
chr6_4	CDS	2560775	2561018	2560775	ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1
chr6_4	CDS	2561082	2561326	2561082	ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1
chr6_4	CDS	2565348	2566398	2565348	ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1

Gene Sequence

>Msa0970910

ATGGGATTCGAGAAAATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAAGGAGAGATCTAGAAAGATAACATTGCAAAAGAGAAAGGATGGTTTAATAAAGAAAGCAAAGGAATTTTCCATTCTTTGTGATGTTGATGTTTGTTTGATCCTGTATGCTCCCAACCTTGAAGGCCAAGGATATGTGCAAAGAATTCTTCAAAATTACTATGACACAACAATTGATAGGCGTCCTAAGACCTATGATGTTCAAGAATATTTTAAGGAGAGGATGAAAAAAGTTGAATTAGAGATTTACAAAGTGCGTAAAGAGAGGTTAAAGATGATGTATCCAACTTGGGATGAATCTTACAATTCTTTTGGATACGAACAATTGAGGTTTTTGGATTCTAAGCTTGACGCATGTGATCAAAAGATGAATATGCGAAAAGATGAATCGCACAAGGTCAATAACCTTATTAGTTCTCCTTACTTGACCTCAAATTCAGGTACCAACTTCAATCTCATGCATACCAACATGTCTCAAGGGAAAATTTACTCTCCATTGATGAATATTTGTGATAAAAATCCCATAGGGTTTTGGCCAATTCAATTGGCACAAAGCTCTCAACCTTCCCTTATGGTTAATGCTAATGTTATGTATGATCCCAAAATCGATATGAAGAAGAAGGATGAAGCTGAAAATGATAAAAACTTGCCATCATACTATTACAATGGAAATGCAATGATAATGCAATCATATCCTATTGCTATGCCTACTCCTCCTTTTCAGAATCTTGCAAACCTATCCCATGAATATCTACTTTATGGATCCTATGATATGGATAGTATTCAAGCTCAACTGTTCAACTCCATGAATGGAACGAAAGTATCTGTGGAATTCATTCCAAAGGAGAAATCTAGGAAGATAGTATTGCAAAAGAGAAAGATTGGTTTGATGAAAAAAGTTGAGGAACTTTCCATTCTTTGTGATGTCGATGCTTGTGTGATTCTTTATGCTCCCAACTTTGAAGGCCAAGGGTATGCCGAACCTGAAACATGGCCGAAAGACACAAAAGAGGTGCAAAGAATTCTTCAAAGGTATTATAACACAACAATTGATAGGCGTCTTAAGACCTATGATGTTCAAGAATATTTTAACGAAAGGATGAAAAAAGTTGAATTTGAGATTTCCAAAGTGCGCAAAGAGAAGTTTAAGATGAAGTATCAAACTTGGGATGAATCTTTCAATTCTCTTGGAGATGAACAATTGAGGTTATTTGCTAGGATCTTGGATTCTAAGCTTGATGCATGCAATCTAAAGATGAATATGCTAGAAGGAGATCTTCTGGGAAAATCAATAGCTCTTGAGACAAACAAGATTGATAATCTTAATAGTTCTCCCTACTTAGACTCAAATCCAAGTAGCCTCAATCTCGTGCAAAACAACATGTCTCAAGCACACATTTATCCTCCATTGATGAATATTAGTGATAAAAACCCTTTAGGGTTTTGGCCACTTATATCGGGTCAAAGCTCTCAACCCTCTCATATGGTTTCAACTGCACAAAGCTCTCAACCTTCTTCTATGGTTTCCCGAGCACAGAGCTTCTACCATGTAGAGTCTAAGGCAGGTATATATGCACAATCTTACCCTTGCAAGCAGATTGATTTTAATTGGACCCATCATGTTGATGCTAATGCCACCAATGATCTCAAAATCGGTATGAAGAAGAATGATGAAGTTGAAAATGATAAAAACTTAGCACCACACTATTACAACGGAAATACAATGACATTGCAATCATATCCCATTGCTATGCCTGCTCTTCCTTTTCAAAATCTTTCAAACCTATCCCATGAACATCTACTTAATGAATCCTATGATACAAATATTCTTCAAGCTCAAATGTTCAACTACATGTATGAAAGGAAGTAG

Protein sequence

>Msa0970910

MGFEKMGRGRISMELIQKERSRKITLQKRKDGLIKKAKEFSILCDVDVCLILYAPNLEGQGYVQRILQNYYDTTIDRRPKTYDVQEYFKERMKKVELEIYKVRKERLKMMYPTWDESYNSFGYEQLRFLDSKLDACDQKMNMRKDESHKVNNLISSPYLTSNSGTNFNLMHTNMSQGKIYSPLMNICDKNPIGFWPIQLAQSSQPSLMVNANVMYDPKIDMKKKDEAENDKNLPSYYYNGNAMIMQSYPIAMPTPPFQNLANLSHEYLLYGSYDMDSIQAQLFNSMNGTKVSVEFIPKEKSRKIVLQKRKIGLMKKVEELSILCDVDACVILYAPNFEGQGYAEPETWPKDTKEVQRILQRYYNTTIDRRLKTYDVQEYFNERMKKVEFEISKVRKEKFKMKYQTWDESFNSLGDEQLRLFARILDSKLDACNLKMNMLEGDLLGKSIALETNKIDNLNSSPYLDSNPSSLNLVQNNMSQAHIYPPLMNISDKNPLGFWPLISGQSSQPSHMVSTAQSSQPSSMVSRAQSFYHVESKAGIYAQSYPCKQIDFNWTHHVDANATNDLKIGMKKNDEVENDKNLAPHYYNGNTMTLQSYPIAMPALPFQNLSNLSHEHLLNESYDTNILQAQMFNYMYERK*