Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970910 | XP_003618177.1 | 57.471 | 348 | 84 | 6 | 6 | 290 | 1 | 347 | 9.31e-115 | 357 |
Msa0970910 | XP_003618177.1 | 82.865 | 356 | 50 | 4 | 286 | 639 | 1 | 347 | 0.0 | 581 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970910 | sp|Q9FIM0|AGL82_ARATH | 34.507 | 142 | 88 | 3 | 291 | 430 | 6 | 144 | 1.43e-15 | 81.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970910 | G7KHI3 | 57.471 | 348 | 84 | 6 | 6 | 290 | 1 | 347 | 4.44e-115 | 357 |
Msa0970910 | G7KHI3 | 82.865 | 356 | 50 | 4 | 286 | 639 | 1 | 347 | 0.0 | 581 |
Gene ID | Type | Classification |
---|---|---|
Msa0970910 | TF | MADS-M-type |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970910 | MtrunA17_Chr6g0449861 | 82.865 | 356 | 50 | 4 | 286 | 639 | 9 | 355 | 0.0 | 580 |
Msa0970910 | MtrunA17_Chr6g0449861 | 57.143 | 350 | 86 | 6 | 4 | 290 | 7 | 355 | 7.60e-119 | 358 |
Msa0970910 | MtrunA17_Chr6g0449851 | 84.127 | 315 | 20 | 3 | 6 | 290 | 1 | 315 | 0.0 | 528 |
Msa0970910 | MtrunA17_Chr6g0449851 | 61.891 | 349 | 92 | 5 | 286 | 633 | 1 | 309 | 3.53e-142 | 416 |
Msa0970910 | MtrunA17_Chr6g0457851 | 64.917 | 362 | 111 | 3 | 282 | 639 | 7 | 356 | 2.12e-159 | 461 |
Msa0970910 | MtrunA17_Chr6g0457851 | 56.447 | 349 | 91 | 4 | 3 | 290 | 8 | 356 | 3.90e-122 | 366 |
Msa0970910 | MtrunA17_Chr1g0212151 | 59.834 | 361 | 112 | 5 | 286 | 632 | 1 | 342 | 2.10e-132 | 392 |
Msa0970910 | MtrunA17_Chr1g0212151 | 52.809 | 356 | 88 | 8 | 6 | 290 | 1 | 347 | 2.60e-107 | 328 |
Msa0970910 | MtrunA17_Chr1g0212471 | 31.844 | 179 | 121 | 1 | 286 | 464 | 1 | 178 | 9.31e-28 | 110 |
Msa0970910 | MtrunA17_Chr1g0212471 | 35.256 | 156 | 86 | 2 | 6 | 146 | 1 | 156 | 1.15e-23 | 99.0 |
Msa0970910 | MtrunA17_Chr4g0059631 | 36.842 | 171 | 100 | 2 | 286 | 456 | 1 | 163 | 1.38e-27 | 112 |
Msa0970910 | MtrunA17_Chr4g0059631 | 35.948 | 153 | 85 | 3 | 6 | 145 | 1 | 153 | 1.38e-23 | 100 |
Msa0970910 | MtrunA17_Chr2g0303981 | 36.842 | 152 | 91 | 2 | 290 | 440 | 7 | 154 | 4.81e-25 | 102 |
Msa0970910 | MtrunA17_Chr2g0303981 | 36.000 | 150 | 83 | 3 | 8 | 144 | 5 | 154 | 4.62e-22 | 94.4 |
Msa0970910 | MtrunA17_Chr4g0022641 | 34.807 | 181 | 103 | 4 | 6 | 173 | 1 | 179 | 9.92e-25 | 107 |
Msa0970910 | MtrunA17_Chr4g0022641 | 34.132 | 167 | 107 | 1 | 286 | 452 | 1 | 164 | 1.49e-24 | 106 |
Msa0970910 | MtrunA17_Chr5g0432691 | 31.515 | 165 | 99 | 5 | 286 | 442 | 1 | 159 | 8.12e-15 | 72.8 |
Msa0970910 | MtrunA17_Chr3g0107351 | 31.481 | 162 | 97 | 5 | 289 | 442 | 3 | 158 | 1.09e-14 | 72.0 |
Msa0970910 | MtrunA17_Chr3g0107341 | 34.356 | 163 | 91 | 6 | 289 | 442 | 3 | 158 | 1.89e-14 | 71.6 |
Msa0970910 | MtrunA17_Chr2g0283941 | 33.945 | 109 | 65 | 3 | 286 | 393 | 1 | 103 | 2.00e-13 | 70.5 |
Msa0970910 | MtrunA17_Chr3g0107361 | 32.099 | 162 | 96 | 6 | 289 | 442 | 3 | 158 | 2.03e-13 | 68.6 |
Msa0970910 | MtrunA17_Chr1g0197321 | 33.607 | 122 | 72 | 4 | 286 | 407 | 1 | 113 | 4.50e-13 | 67.4 |
Msa0970910 | MtrunA17_Chr8g0380021 | 28.667 | 150 | 94 | 3 | 5 | 146 | 16 | 160 | 6.15e-13 | 68.9 |
Msa0970910 | MtrunA17_Chr3g0107381 | 23.504 | 234 | 147 | 8 | 286 | 500 | 1 | 221 | 8.22e-13 | 68.2 |
Msa0970910 | MtrunA17_Chr2g0284911 | 28.758 | 153 | 90 | 3 | 5 | 146 | 15 | 159 | 1.01e-12 | 68.9 |
Msa0970910 | MtrunA17_Chr3g0107331 | 34.259 | 108 | 64 | 3 | 290 | 396 | 4 | 105 | 1.53e-12 | 65.9 |
Msa0970910 | MtrunA17_Chr3g0134451 | 33.333 | 102 | 62 | 2 | 6 | 102 | 1 | 101 | 2.02e-12 | 68.6 |
Msa0970910 | MtrunA17_Chr2g0279821 | 28.144 | 167 | 94 | 5 | 6 | 154 | 1 | 159 | 2.18e-12 | 67.4 |
Msa0970910 | MtrunA17_Chr5g0420351 | 29.688 | 128 | 77 | 3 | 286 | 413 | 1 | 115 | 2.28e-12 | 65.5 |
Msa0970910 | MtrunA17_Chr5g0425191 | 47.059 | 51 | 27 | 0 | 6 | 56 | 1 | 51 | 9.69e-12 | 62.0 |
Msa0970910 | MtrunA17_Chr3g0110131 | 26.122 | 245 | 143 | 8 | 286 | 500 | 1 | 237 | 1.77e-11 | 64.7 |
Msa0970910 | MtrunA17_Chr1g0197261 | 28.994 | 169 | 93 | 5 | 286 | 440 | 1 | 156 | 2.03e-11 | 62.8 |
Msa0970910 | MtrunA17_Chr5g0404951 | 29.932 | 147 | 91 | 4 | 6 | 144 | 1 | 143 | 2.09e-11 | 64.3 |
Msa0970910 | MtrunA17_Chr4g0014321 | 37.288 | 118 | 59 | 5 | 286 | 402 | 1 | 104 | 2.59e-11 | 63.9 |
Msa0970910 | MtrunA17_Chr8g0351751 | 33.962 | 106 | 61 | 4 | 286 | 388 | 1 | 100 | 2.62e-11 | 64.3 |
Msa0970910 | MtrunA17_Chr4g0061691 | 28.846 | 156 | 85 | 6 | 6 | 146 | 1 | 145 | 2.76e-11 | 63.9 |
Msa0970910 | MtrunA17_Chr1g0173161 | 48.980 | 49 | 25 | 0 | 6 | 54 | 1 | 49 | 7.06e-11 | 58.9 |
Msa0970910 | MtrunA17_Chr7g0246381 | 44.898 | 49 | 27 | 0 | 6 | 54 | 1 | 49 | 7.60e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0970910 | AT5G55690.1 | 32.700 | 263 | 127 | 12 | 291 | 542 | 6 | 229 | 1.58e-22 | 98.6 |
Msa0970910 | AT5G55690.1 | 38.710 | 124 | 56 | 2 | 6 | 116 | 1 | 117 | 2.25e-16 | 80.5 |
Msa0970910 | AT5G55690.2 | 32.700 | 263 | 127 | 12 | 291 | 542 | 6 | 229 | 1.58e-22 | 98.6 |
Msa0970910 | AT5G55690.2 | 38.710 | 124 | 56 | 2 | 6 | 116 | 1 | 117 | 2.25e-16 | 80.5 |
Msa0970910 | AT5G58890.1 | 34.507 | 142 | 88 | 3 | 291 | 430 | 6 | 144 | 1.46e-16 | 81.3 |
Msa0970910 | AT3G18650.1 | 37.037 | 135 | 71 | 5 | 301 | 429 | 31 | 157 | 9.84e-14 | 73.9 |
Msa0970910 | AT3G18650.1 | 35.200 | 125 | 69 | 4 | 21 | 134 | 31 | 154 | 1.91e-11 | 66.6 |
Msa0970910 | AT1G22590.2 | 29.193 | 161 | 103 | 4 | 286 | 441 | 1 | 155 | 1.30e-12 | 66.6 |
Msa0970910 | AT3G57230.1 | 27.152 | 151 | 92 | 6 | 6 | 146 | 1 | 143 | 4.52e-12 | 67.0 |
Msa0970910 | AT3G57230.4 | 27.152 | 151 | 92 | 6 | 6 | 146 | 1 | 143 | 4.52e-12 | 67.0 |
Msa0970910 | AT2G22630.1 | 55.102 | 49 | 22 | 0 | 6 | 54 | 1 | 49 | 4.77e-12 | 66.6 |
Msa0970910 | AT2G22630.2 | 55.102 | 49 | 22 | 0 | 6 | 54 | 1 | 49 | 4.77e-12 | 66.6 |
Msa0970910 | AT4G18960.1 | 28.387 | 155 | 92 | 4 | 3 | 146 | 14 | 160 | 7.87e-12 | 66.2 |
Msa0970910 | AT4G09960.5 | 28.289 | 152 | 90 | 4 | 6 | 146 | 11 | 154 | 1.00e-11 | 65.9 |
Msa0970910 | AT4G09960.1 | 28.289 | 152 | 90 | 4 | 6 | 146 | 1 | 144 | 1.06e-11 | 65.5 |
Msa0970910 | AT4G09960.6 | 28.289 | 152 | 90 | 4 | 6 | 146 | 2 | 145 | 1.14e-11 | 65.5 |
Msa0970910 | AT4G37940.3 | 27.815 | 151 | 91 | 3 | 6 | 146 | 1 | 143 | 1.29e-11 | 63.9 |
Msa0970910 | AT4G09960.2 | 27.815 | 151 | 90 | 4 | 6 | 145 | 1 | 143 | 1.40e-11 | 65.1 |
Msa0970910 | AT3G57390.3 | 46.667 | 75 | 32 | 2 | 6 | 74 | 1 | 73 | 1.43e-11 | 65.1 |
Msa0970910 | AT3G58780.5 | 26.144 | 153 | 94 | 3 | 5 | 146 | 21 | 165 | 1.61e-11 | 65.5 |
Msa0970910 | AT2G42830.2 | 26.797 | 153 | 93 | 3 | 5 | 146 | 15 | 159 | 1.76e-11 | 65.5 |
Msa0970910 | AT3G58780.1 | 26.144 | 153 | 94 | 3 | 5 | 146 | 15 | 159 | 1.88e-11 | 65.1 |
Msa0970910 | AT2G42830.1 | 26.797 | 153 | 93 | 3 | 5 | 146 | 15 | 159 | 1.88e-11 | 65.1 |
Msa0970910 | AT1G31640.1 | 22.467 | 227 | 144 | 8 | 289 | 507 | 3 | 205 | 1.90e-11 | 67.0 |
Msa0970910 | AT4G09960.3 | 28.105 | 153 | 91 | 4 | 5 | 146 | 26 | 170 | 1.99e-11 | 65.1 |
Msa0970910 | AT4G37940.1 | 27.815 | 151 | 91 | 3 | 6 | 146 | 1 | 143 | 2.22e-11 | 64.7 |
Msa0970910 | AT3G05860.2 | 36.364 | 77 | 43 | 2 | 286 | 362 | 1 | 71 | 2.42e-11 | 63.9 |
Msa0970910 | AT3G05860.3 | 37.662 | 77 | 42 | 3 | 286 | 362 | 1 | 71 | 2.54e-11 | 64.7 |
Msa0970910 | AT3G57390.1 | 46.667 | 75 | 32 | 2 | 6 | 74 | 1 | 73 | 2.68e-11 | 64.7 |
Msa0970910 | AT4G37940.4 | 28.188 | 149 | 89 | 3 | 6 | 144 | 1 | 141 | 3.32e-11 | 63.9 |
Msa0970910 | AT3G05860.1 | 37.662 | 77 | 42 | 3 | 286 | 362 | 1 | 71 | 3.59e-11 | 64.7 |
Msa0970910 | AT3G57230.2 | 26.846 | 149 | 91 | 6 | 6 | 144 | 1 | 141 | 3.75e-11 | 62.0 |
Msa0970910 | AT5G23260.2 | 29.932 | 147 | 93 | 3 | 6 | 146 | 1 | 143 | 5.93e-11 | 63.9 |
Msa0970910 | AT4G09960.4 | 28.105 | 153 | 91 | 4 | 5 | 146 | 95 | 239 | 6.46e-11 | 64.7 |
Msa0970910 | AT5G20240.2 | 49.020 | 51 | 26 | 0 | 6 | 56 | 1 | 51 | 7.93e-11 | 61.2 |
Msa0970910 | AT5G23260.4 | 29.730 | 148 | 94 | 3 | 5 | 146 | 16 | 159 | 8.04e-11 | 63.5 |
Msa0970910 | AT3G58780.4 | 25.806 | 155 | 96 | 3 | 4 | 147 | 14 | 160 | 9.01e-11 | 63.5 |
Msa0970910 | AT5G23260.3 | 33.333 | 99 | 60 | 1 | 6 | 98 | 1 | 99 | 9.10e-11 | 63.2 |
Msa0970910 | AT3G58780.2 | 24.648 | 142 | 103 | 1 | 5 | 146 | 15 | 152 | 9.14e-11 | 63.2 |
Msa0970910 | AT1G77950.3 | 40.278 | 72 | 38 | 1 | 6 | 72 | 1 | 72 | 9.18e-11 | 63.2 |
Msa0970910 | AT1G77950.2 | 40.278 | 72 | 38 | 1 | 6 | 72 | 1 | 72 | 9.18e-11 | 63.2 |
Msa0970910 | AT1G77950.1 | 40.278 | 72 | 38 | 1 | 6 | 72 | 1 | 72 | 9.18e-11 | 63.2 |
Msa0970910 | AT1G77950.4 | 40.278 | 72 | 38 | 1 | 6 | 72 | 1 | 72 | 9.18e-11 | 63.2 |
Find 116 sgRNAs with CRISPR-Local
Find 373 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTCTTCATATCGATTT+TGG | 0.101762 | 6_4:-2561107 | None:intergenic |
TCCCATGAATATCTACTTTA+TGG | 0.106807 | 6_4:+2561247 | Msa0970910:CDS |
GTGTCTTTCGGCCATGTTTC+AGG | 0.186338 | 6_4:-2565511 | None:intergenic |
GATGAATCTTACAATTCTTT+TGG | 0.252372 | 6_4:+2560725 | Msa0970910:CDS |
AAGCTCTCAACCTTCTTCTA+TGG | 0.280995 | 6_4:+2566029 | Msa0970910:CDS |
TTGAAGAATATTTGTATCAT+AGG | 0.296113 | 6_4:-2566340 | None:intergenic |
TCTTGAACATCATAGGTCTT+AGG | 0.310978 | 6_4:-2560617 | None:intergenic |
CCTTACTTGACCTCAAATTC+AGG | 0.312584 | 6_4:+2560863 | Msa0970910:CDS |
ATCTTCCTAGATTTCTCCTT+TGG | 0.315866 | 6_4:-2565367 | None:intergenic |
TATGCTAGAAGGAGATCTTC+TGG | 0.319876 | 6_4:+2565789 | Msa0970910:CDS |
CTTCTACCATGTAGAGTCTA+AGG | 0.320406 | 6_4:+2566068 | Msa0970910:CDS |
AGGCTACTTCGTTCCATTCA+TGG | 0.325169 | 6_4:-2561311 | None:intergenic |
ACTTTATGGATCCTATGATA+TGG | 0.335816 | 6_4:+2561261 | Msa0970910:CDS |
CAACATATCCTTGGCCTTCA+AGG | 0.352632 | 6_4:-2560514 | None:intergenic |
AAGCTCTCAACCTTCCCTTA+TGG | 0.354140 | 6_4:+2560997 | Msa0970910:CDS |
GATGAATCTTTCAATTCTCT+TGG | 0.359377 | 6_4:+2565697 | Msa0970910:CDS |
TCAAGTAAGGAGAACTAATA+AGG | 0.363002 | 6_4:-2560850 | None:intergenic |
AAAATATTCTTGAACATCAT+AGG | 0.366937 | 6_4:-2565596 | None:intergenic |
GGGTCGTGGAAGAATATCTA+TGG | 0.367126 | 6_4:+2560364 | Msa0970910:CDS |
CTTTATGCTCCCAACTTTGA+AGG | 0.375391 | 6_4:+2565472 | Msa0970910:CDS |
GAGGTTATTTGCTAGGATCT+TGG | 0.377459 | 6_4:+2565732 | Msa0970910:CDS |
TACCCTTGGCCTTCAAAGTT+GGG | 0.389570 | 6_4:-2565481 | None:intergenic |
TTTCGGCCATGTTTCAGGTT+CGG | 0.407707 | 6_4:-2565506 | None:intergenic |
AAAATATTCTTGAACATCAT+AGG | 0.416188 | 6_4:-2560624 | None:intergenic |
TATCCTTGGCCTTCAAGGTT+GGG | 0.419769 | 6_4:-2560509 | None:intergenic |
GTATTGCAAAAGAGAAAGAT+TGG | 0.420157 | 6_4:+2565391 | Msa0970910:CDS |
CTGTATGCTCCCAACCTTGA+AGG | 0.420817 | 6_4:+2560500 | Msa0970910:CDS |
CTAAAGATGAATATGCTAGA+AGG | 0.421397 | 6_4:+2565778 | Msa0970910:CDS |
ATTCATTAAGTAGATGTTCA+TGG | 0.428966 | 6_4:-2566317 | None:intergenic |
TCATTCCAAAGGAGAAATCT+AGG | 0.429671 | 6_4:+2565362 | Msa0970910:CDS |
TTGAATACTATCCATATCAT+AGG | 0.430128 | 6_4:-2561272 | None:intergenic |
GAGCTTTGTGCCAATTGAAT+TGG | 0.430763 | 6_4:-2560980 | None:intergenic |
TGCACGAGATTGAGGCTACT+TGG | 0.432844 | 6_4:-2565880 | None:intergenic |
AACATCAACATCACAAAGAA+TGG | 0.436469 | 6_4:-2560468 | None:intergenic |
AAACTTCTCTTTGCGCACTT+TGG | 0.438281 | 6_4:-2565653 | None:intergenic |
ATCCATAAAGTAGATATTCA+TGG | 0.445056 | 6_4:-2561249 | None:intergenic |
GCCACCAATGATCTCAAAAT+CGG | 0.446186 | 6_4:+2566162 | Msa0970910:CDS |
ACTTGGATTTGAGTCTAAGT+AGG | 0.446409 | 6_4:-2565863 | None:intergenic |
ACTATGACACAACAATTGAT+AGG | 0.455411 | 6_4:+2560591 | Msa0970910:CDS |
TAAGTAGATGTTCATGGGAT+AGG | 0.458812 | 6_4:-2566311 | None:intergenic |
ATTATAACACAACAATTGAT+AGG | 0.461207 | 6_4:+2565563 | Msa0970910:CDS |
TGGATTAAATATTAGATTCG+AGG | 0.461248 | 6_4:+2559254 | Msa0970910:intron |
ATACCCTTGGCCTTCAAAGT+TGG | 0.461392 | 6_4:-2565482 | None:intergenic |
GGAGGAGTAGGCATAGCAAT+AGG | 0.462020 | 6_4:-2561202 | None:intergenic |
TTGAATTGGCCAAAACCCTA+TGG | 0.463206 | 6_4:-2560966 | None:intergenic |
ATCTATGGAACTCATTCAAA+AGG | 0.463531 | 6_4:+2560379 | Msa0970910:CDS |
CAACTGTTCAACTCCATGAA+TGG | 0.470369 | 6_4:+2561298 | Msa0970910:CDS |
TTAAGATGAAGTATCAAACT+TGG | 0.470449 | 6_4:+2565674 | Msa0970910:CDS |
TTATCACAAATATTCATCAA+TGG | 0.474002 | 6_4:-2560938 | None:intergenic |
TTTCAGGTTCGGCATACCCT+TGG | 0.475656 | 6_4:-2565495 | None:intergenic |
AACAATTGAGGTTATTTGCT+AGG | 0.476502 | 6_4:+2565725 | Msa0970910:CDS |
TTTCCATTGTAATAGTATGA+TGG | 0.479664 | 6_4:-2561157 | None:intergenic |
TTAAAATCAATCTGCTTGCA+AGG | 0.480005 | 6_4:-2566114 | None:intergenic |
ATATTGTGTTCATAGAAAAT+GGG | 0.480214 | 6_4:+2560344 | Msa0970910:intron |
AAGCTCTCAACCCTCTCATA+TGG | 0.482453 | 6_4:+2565993 | Msa0970910:CDS |
ATGCTAGAAGGAGATCTTCT+GGG | 0.483728 | 6_4:+2565790 | Msa0970910:CDS |
CCTGAATTTGAGGTCAAGTA+AGG | 0.484340 | 6_4:-2560863 | None:intergenic |
TAAGTGGCCAAAACCCTAAA+GGG | 0.486281 | 6_4:-2565960 | None:intergenic |
AAAGTAGATATTCATGGGAT+AGG | 0.486977 | 6_4:-2561243 | None:intergenic |
AGCATCGACATCACAAAGAA+TGG | 0.487435 | 6_4:-2565440 | None:intergenic |
TTTCAGGTTCAACATATCCT+TGG | 0.488478 | 6_4:-2560523 | None:intergenic |
TTATCACTAATATTCATCAA+TGG | 0.491553 | 6_4:-2565934 | None:intergenic |
CTCTTGGAGATGAACAATTG+AGG | 0.499688 | 6_4:+2565713 | Msa0970910:CDS |
ATATCCTTGGCCTTCAAGGT+TGG | 0.502086 | 6_4:-2560510 | None:intergenic |
GAAGTTGGTACCTGAATTTG+AGG | 0.503776 | 6_4:-2560873 | None:intergenic |
CAAAATCGATATGAAGAAGA+AGG | 0.504284 | 6_4:+2561108 | Msa0970910:CDS |
GATAACATTGCAAAAGAGAA+AGG | 0.505631 | 6_4:+2560415 | Msa0970910:CDS |
GGAAGAGCAGGCATAGCAAT+GGG | 0.507599 | 6_4:-2566270 | None:intergenic |
TTCATTAAGTAGATGTTCAT+GGG | 0.507722 | 6_4:-2566316 | None:intergenic |
ATGGTAGAAGCTCTGTGCTC+GGG | 0.509126 | 6_4:-2566055 | None:intergenic |
GCTCCCAACTTTGAAGGCCA+AGG | 0.510014 | 6_4:+2565478 | Msa0970910:CDS |
GAGCTTTGACCCGATATAAG+TGG | 0.512541 | 6_4:-2565976 | None:intergenic |
TTGCCATCATACTATTACAA+TGG | 0.513046 | 6_4:+2561154 | Msa0970910:CDS |
TTGTGAACTGGAAACCATAA+GGG | 0.517232 | 6_4:-2561011 | None:intergenic |
ATAAGTGGCCAAAACCCTAA+AGG | 0.517760 | 6_4:-2565961 | None:intergenic |
CTTGGATTTGAGTCTAAGTA+GGG | 0.520886 | 6_4:-2565862 | None:intergenic |
TGGCATTAGCATCAACATGA+TGG | 0.525287 | 6_4:-2566143 | None:intergenic |
CATGGTAGAAGCTCTGTGCT+CGG | 0.530303 | 6_4:-2566056 | None:intergenic |
TAAAGATGATGTATCCAACT+TGG | 0.530838 | 6_4:+2560702 | Msa0970910:CDS |
CTTCAAGGTTGGGAGCATAC+AGG | 0.533279 | 6_4:-2560499 | None:intergenic |
TGAATTGGCCAAAACCCTAT+GGG | 0.542091 | 6_4:-2560965 | None:intergenic |
AGGTTTGCAAGATTCTGAAA+AGG | 0.545328 | 6_4:-2561223 | None:intergenic |
TCCATAAAGTAGATATTCAT+GGG | 0.546951 | 6_4:-2561248 | None:intergenic |
AGATTCTGAAAAGGAGGAGT+AGG | 0.549609 | 6_4:-2561214 | None:intergenic |
TAAGATGAAGTATCAAACTT+GGG | 0.559208 | 6_4:+2565675 | Msa0970910:CDS |
ATGCATACCAACATGTCTCA+AGG | 0.563493 | 6_4:+2560902 | Msa0970910:CDS |
TGCAGTTGAAACCATATGAG+AGG | 0.566645 | 6_4:-2566004 | None:intergenic |
TGTTCAACTACATGTATGAA+AGG | 0.567684 | 6_4:+2566370 | Msa0970910:CDS |
GGCATTAGCATCAACATGAT+GGG | 0.570214 | 6_4:-2566142 | None:intergenic |
GGTATGCATGAGATTGAAGT+TGG | 0.570442 | 6_4:-2560888 | None:intergenic |
TGTTCATAGAAAATGGGTCG+TGG | 0.571043 | 6_4:+2560350 | Msa0970910:intron |
ACATTGCAAAAGAGAAAGGA+TGG | 0.582137 | 6_4:+2560419 | Msa0970910:CDS |
TACCATGTAGAGTCTAAGGC+AGG | 0.584231 | 6_4:+2566072 | Msa0970910:CDS |
TTGTAAGATTCATCCCAAGT+TGG | 0.584895 | 6_4:-2560716 | None:intergenic |
ATCTGTGGAATTCATTCCAA+AGG | 0.586943 | 6_4:+2565351 | Msa0970910:CDS |
CTCCCAACTTTGAAGGCCAA+GGG | 0.588006 | 6_4:+2565479 | Msa0970910:CDS |
AAAGATGATGTATCCAACTT+GGG | 0.588589 | 6_4:+2560703 | Msa0970910:CDS |
TCACTAATATTCATCAATGG+AGG | 0.597003 | 6_4:-2565931 | None:intergenic |
GTATTTCCGTTGTAATAGTG+TGG | 0.597710 | 6_4:-2566228 | None:intergenic |
GCTCCCAACCTTGAAGGCCA+AGG | 0.597883 | 6_4:+2560506 | Msa0970910:CDS |
TTTACAAAGTGCGTAAAGAG+AGG | 0.599078 | 6_4:+2560678 | Msa0970910:CDS |
TAAAATCAATCTGCTTGCAA+GGG | 0.599195 | 6_4:-2566113 | None:intergenic |
GCTCGGGAAACCATAGAAGA+AGG | 0.599676 | 6_4:-2566039 | None:intergenic |
AGGAAGAGCAGGCATAGCAA+TGG | 0.601693 | 6_4:-2566271 | None:intergenic |
AGGTGCAAAGAATTCTTCAA+AGG | 0.603453 | 6_4:+2565539 | Msa0970910:CDS |
TTTGCAAGATTCTGAAAAGG+AGG | 0.605154 | 6_4:-2561220 | None:intergenic |
TACCTGCCTTAGACTCTACA+TGG | 0.609420 | 6_4:-2566074 | None:intergenic |
TTAGCACCACACTATTACAA+CGG | 0.610413 | 6_4:+2566222 | Msa0970910:CDS |
TGCATACCAACATGTCTCAA+GGG | 0.610432 | 6_4:+2560903 | Msa0970910:CDS |
GGGTCGTGGAAGAGTATCTG+TGG | 0.635324 | 6_4:+2565336 | Msa0970910:intron |
GGTATGCCGAACCTGAAACA+TGG | 0.643156 | 6_4:+2565500 | Msa0970910:CDS |
TGGTTTAATAAAGAAAGCAA+AGG | 0.644031 | 6_4:+2560439 | Msa0970910:CDS |
ATGGCCGAAAGACACAAAAG+AGG | 0.657999 | 6_4:+2565519 | Msa0970910:CDS |
GAACTGGAAACCATAAGGGA+AGG | 0.661731 | 6_4:-2561007 | None:intergenic |
GCGAAAAGATGAATCGCACA+AGG | 0.697271 | 6_4:+2560820 | Msa0970910:CDS |
GCAGTTGAAACCATATGAGA+GGG | 0.704855 | 6_4:-2566003 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATATAAAAAAAAAAAA+AGG | + | chr6_4:2561912-2561931 | Msa0970910:intron | 0.0% |
!!! | CTATATAATTTATGTTTTTA+GGG | - | chr6_4:2558954-2558973 | None:intergenic | 10.0% |
!!! | ACTATATAATTTATGTTTTT+AGG | - | chr6_4:2558955-2558974 | None:intergenic | 10.0% |
!! | ATTCTTAAAATAAATAAGAT+AGG | - | chr6_4:2559144-2559163 | None:intergenic | 10.0% |
!!! | TCATATTTTTTATTTATTTG+TGG | + | chr6_4:2559415-2559434 | Msa0970910:intron | 10.0% |
!!! | TTATTATTATTTTGGATTTT+GGG | - | chr6_4:2559513-2559532 | None:intergenic | 10.0% |
!!! | ATTATTATTATTTTGGATTT+TGG | - | chr6_4:2559514-2559533 | None:intergenic | 10.0% |
!!! | CATAATCATTATTATTATTT+TGG | - | chr6_4:2559521-2559540 | None:intergenic | 10.0% |
!!! | AATCATTGTTTTTATTTATT+TGG | + | chr6_4:2559672-2559691 | Msa0970910:intron | 10.0% |
!!! | AGAAATTTTATTAATAAAAG+TGG | + | chr6_4:2559819-2559838 | Msa0970910:intron | 10.0% |
!!! | TAAGACAATTATTTTTATTT+TGG | + | chr6_4:2559895-2559914 | Msa0970910:intron | 10.0% |
!! | AATTATTTAGATTAATTTCT+TGG | - | chr6_4:2562970-2562989 | None:intergenic | 10.0% |
!!! | TATTTTTTTATTTCCTTTTT+TGG | + | chr6_4:2563180-2563199 | Msa0970910:intron | 10.0% |
!! | TATTGTGTAAAATTAATTTA+CGG | + | chr6_4:2564201-2564220 | Msa0970910:intron | 10.0% |
!! | GTAATTAAAAAGTAAATAAA+AGG | - | chr6_4:2565211-2565230 | None:intergenic | 10.0% |
!!! | TTTGTTTGTTTCTATTTTTT+TGG | + | chr6_4:2558847-2558866 | Msa0970910:intron | 15.0% |
!!! | TTGTGTTTATTTTGATTAAA+AGG | + | chr6_4:2558872-2558891 | Msa0970910:intron | 15.0% |
!!! | TAAAATTTCTTTTGTAGTTT+TGG | + | chr6_4:2559234-2559253 | Msa0970910:intron | 15.0% |
!! | ATAAGCAAAATAAAATACTA+TGG | + | chr6_4:2559596-2559615 | Msa0970910:intron | 15.0% |
!! | TAAGCAAAATAAAATACTAT+GGG | + | chr6_4:2559597-2559616 | Msa0970910:intron | 15.0% |
!! | AATAAAAATAATTGTCTTAG+AGG | - | chr6_4:2559894-2559913 | None:intergenic | 15.0% |
!!! | TATTTGAGTATTTATTTTCT+AGG | + | chr6_4:2560260-2560279 | Msa0970910:intron | 15.0% |
!! | ATTTGGTATAAAAAAAAACA+TGG | - | chr6_4:2560295-2560314 | None:intergenic | 15.0% |
!! | CAATAAACTAAACAAATAAA+TGG | - | chr6_4:2561414-2561433 | None:intergenic | 15.0% |
!! | TTAGCATTCTTAAAAAAAAT+AGG | - | chr6_4:2562380-2562399 | None:intergenic | 15.0% |
!!! | TCCATTTTTTATATTTATTC+AGG | + | chr6_4:2562581-2562600 | Msa0970910:intron | 15.0% |
!! | TCCTGAATAAATATAAAAAA+TGG | - | chr6_4:2562585-2562604 | None:intergenic | 15.0% |
!! | AAAATAATCAATCAAATTGA+AGG | - | chr6_4:2563166-2563185 | None:intergenic | 15.0% |
!!! | TTCATTTTCATTATATATAG+TGG | + | chr6_4:2563266-2563285 | Msa0970910:intron | 15.0% |
!! | AGAAAATAACATATAATTAG+AGG | + | chr6_4:2563289-2563308 | Msa0970910:intron | 15.0% |
!! | AAACAAAAATAAAATTATGC+TGG | - | chr6_4:2563430-2563449 | None:intergenic | 15.0% |
!!! | TTTGTGTATTTCAATAATTT+TGG | + | chr6_4:2563670-2563689 | Msa0970910:intron | 15.0% |
!!! | TTGTGTATTTCAATAATTTT+GGG | + | chr6_4:2563671-2563690 | Msa0970910:intron | 15.0% |
!! | CAAATTAAAAAAATTACGAA+AGG | - | chr6_4:2563701-2563720 | None:intergenic | 15.0% |
!! | AACAAAAACTTATATGTATA+TGG | - | chr6_4:2564640-2564659 | None:intergenic | 15.0% |
!! | GATATGACTAAATAGTTTAA+TGG | - | chr6_4:2559178-2559197 | None:intergenic | 20.0% |
!!! | GATACTTCATCAATTTTTTT+AGG | + | chr6_4:2559635-2559654 | Msa0970910:intron | 20.0% |
!! | TTTAAAAAACAAATCGAGAA+AGG | + | chr6_4:2559796-2559815 | Msa0970910:intron | 20.0% |
!! | TTAGAGGATTATATATTTGT+TGG | + | chr6_4:2559984-2560003 | Msa0970910:intron | 20.0% |
!! | ATCAAATACTATATGTCTTT+AGG | + | chr6_4:2560016-2560035 | Msa0970910:intron | 20.0% |
!! | TCAAATACTATATGTCTTTA+GGG | + | chr6_4:2560017-2560036 | Msa0970910:intron | 20.0% |
!!! | TCTTTTATATTACCTTGTAA+AGG | + | chr6_4:2560107-2560126 | Msa0970910:intron | 20.0% |
!!! | CTTTTATATTACCTTGTAAA+GGG | + | chr6_4:2560108-2560127 | Msa0970910:intron | 20.0% |
!! | TTATAAATATACCCTTTACA+AGG | - | chr6_4:2560122-2560141 | None:intergenic | 20.0% |
!! | TATATTGTGTTCATAGAAAA+TGG | + | chr6_4:2560343-2560362 | Msa0970910:intron | 20.0% |
!! | ATATTGTGTTCATAGAAAAT+GGG | + | chr6_4:2560344-2560363 | Msa0970910:intron | 20.0% |
!! | AAAATATTCTTGAACATCAT+AGG | - | chr6_4:2560627-2560646 | None:intergenic | 20.0% |
!!! | TGATGTTCAAGAATATTTTA+AGG | + | chr6_4:2560628-2560647 | Msa0970910:CDS | 20.0% |
!! | TTATCACAAATATTCATCAA+TGG | - | chr6_4:2560941-2560960 | None:intergenic | 20.0% |
!! | CTTATACTAAAAAACTAGTA+TGG | - | chr6_4:2561353-2561372 | None:intergenic | 20.0% |
!!! | TTTGTTTAGTTTATTGAACT+AGG | + | chr6_4:2561418-2561437 | Msa0970910:intron | 20.0% |
!!! | TTGTTTAGTTTATTGAACTA+GGG | + | chr6_4:2561419-2561438 | Msa0970910:intron | 20.0% |
!!! | TTTTTTTTCTTGGTTTTAAG+TGG | + | chr6_4:2561448-2561467 | Msa0970910:intron | 20.0% |
!! | TATATATATATAATACAGGC+CGG | + | chr6_4:2561528-2561547 | Msa0970910:intron | 20.0% |
!!! | TTGCATAGTGTTTATTTTTA+TGG | - | chr6_4:2561769-2561788 | None:intergenic | 20.0% |
!! | AAAAAAAAGGAAAAAACATG+TGG | + | chr6_4:2561925-2561944 | Msa0970910:intron | 20.0% |
!! | ACAAAGATAATCTTAATCTT+TGG | - | chr6_4:2562075-2562094 | None:intergenic | 20.0% |
!!! | TTTAAGAGATTATTTTTTCG+TGG | - | chr6_4:2562861-2562880 | None:intergenic | 20.0% |
!! | TACTTTACATATCTAAACTT+TGG | - | chr6_4:2562943-2562962 | None:intergenic | 20.0% |
!! | AAGTTTAGATATGTAAAGTA+TGG | + | chr6_4:2562943-2562962 | Msa0970910:intron | 20.0% |
!!! | AGTATTCGATTCTTTTTTAA+TGG | - | chr6_4:2563077-2563096 | None:intergenic | 20.0% |
!! | CTAAAAGAAATGAAAATGAA+TGG | - | chr6_4:2563206-2563225 | None:intergenic | 20.0% |
!! | GTAAAATTTCTTTCATAGTT+AGG | + | chr6_4:2563523-2563542 | Msa0970910:intron | 20.0% |
!! | ACATAATTCAATGTAATTAC+AGG | - | chr6_4:2563870-2563889 | None:intergenic | 20.0% |
!!! | AATTTGTTTATAATAGTGAC+CGG | - | chr6_4:2564020-2564039 | None:intergenic | 20.0% |
!! | TTGTAATAAAAAGTAGCTAT+AGG | + | chr6_4:2564993-2565012 | Msa0970910:intron | 20.0% |
!! | ATTATAACACAACAATTGAT+AGG | + | chr6_4:2565563-2565582 | Msa0970910:CDS | 20.0% |
!! | AAAATATTCTTGAACATCAT+AGG | - | chr6_4:2560627-2560646 | None:intergenic | 20.0% |
!!! | TTCAAGAATATTTTAACGAA+AGG | + | chr6_4:2565605-2565624 | Msa0970910:CDS | 20.0% |
!! | TTATCACTAATATTCATCAA+TGG | - | chr6_4:2565937-2565956 | None:intergenic | 20.0% |
!! | TTGAAGAATATTTGTATCAT+AGG | - | chr6_4:2566343-2566362 | None:intergenic | 20.0% |
! | GATCTAAATTGTAGAATTAG+TGG | + | chr6_4:2558918-2558937 | Msa0970910:intron | 25.0% |
! | TGGATTAAATATTAGATTCG+AGG | + | chr6_4:2559254-2559273 | Msa0970910:intron | 25.0% |
!!! | AACCTCTTCTTTAATTTGTT+TGG | + | chr6_4:2559317-2559336 | Msa0970910:intron | 25.0% |
!! | TTGATGTATCTCGATAATTT+TGG | + | chr6_4:2559381-2559400 | Msa0970910:intron | 25.0% |
!! | TGATGTATCTCGATAATTTT+GGG | + | chr6_4:2559382-2559401 | Msa0970910:intron | 25.0% |
! | TAGTTTAGATCGTTGTAATT+TGG | - | chr6_4:2559854-2559873 | None:intergenic | 25.0% |
! | ATACTGTGGTATAGTATATT+TGG | - | chr6_4:2560312-2560331 | None:intergenic | 25.0% |
! | ATAATCAAGTATTCATACTG+TGG | - | chr6_4:2560326-2560345 | None:intergenic | 25.0% |
! | TGGTTTAATAAAGAAAGCAA+AGG | + | chr6_4:2560439-2560458 | Msa0970910:CDS | 25.0% |
!!! | TTCAAGAATATTTTAAGGAG+AGG | + | chr6_4:2560633-2560652 | Msa0970910:CDS | 25.0% |
!! | GATGAATCTTACAATTCTTT+TGG | + | chr6_4:2560725-2560744 | Msa0970910:CDS | 25.0% |
! | ATTTGTGATAAAAATCCCAT+AGG | + | chr6_4:2560950-2560969 | Msa0970910:CDS | 25.0% |
! | TTTGTGATAAAAATCCCATA+GGG | + | chr6_4:2560951-2560970 | Msa0970910:CDS | 25.0% |
!!! | TTCTTCTTCATATCGATTTT+GGG | - | chr6_4:2561109-2561128 | None:intergenic | 25.0% |
! | TTTCCATTGTAATAGTATGA+TGG | - | chr6_4:2561160-2561179 | None:intergenic | 25.0% |
! | TCCATAAAGTAGATATTCAT+GGG | - | chr6_4:2561251-2561270 | None:intergenic | 25.0% |
! | ATCCATAAAGTAGATATTCA+TGG | - | chr6_4:2561252-2561271 | None:intergenic | 25.0% |
! | TTGAATACTATCCATATCAT+AGG | - | chr6_4:2561275-2561294 | None:intergenic | 25.0% |
! | TTTATGGAATTGCTAAGTAT+TGG | - | chr6_4:2561753-2561772 | None:intergenic | 25.0% |
!!! | GTATGTGAGTTTAATTTTAG+TGG | + | chr6_4:2562030-2562049 | Msa0970910:intron | 25.0% |
!! | GATTATCTTTGTTTATGTCA+CGG | + | chr6_4:2562083-2562102 | Msa0970910:intron | 25.0% |
! | TCACAACATATTTCTCTATT+TGG | + | chr6_4:2562245-2562264 | Msa0970910:intron | 25.0% |
! | CACAACATATTTCTCTATTT+GGG | + | chr6_4:2562246-2562265 | Msa0970910:intron | 25.0% |
! | TTCTTAAAGAAATGAACATC+TGG | + | chr6_4:2562322-2562341 | Msa0970910:intron | 25.0% |
!!! | AGTTTTAACCTTTTGAAAGT+CGG | - | chr6_4:2562413-2562432 | None:intergenic | 25.0% |
! | ACTTTCAAAAGGTTAAAACT+TGG | + | chr6_4:2562413-2562432 | Msa0970910:intron | 25.0% |
! | AGACTTTGTCAAAAAGTTTA+AGG | - | chr6_4:2562479-2562498 | None:intergenic | 25.0% |
!!! | TTTTAGAAGTTTTCTTTCGT+TGG | + | chr6_4:2562640-2562659 | Msa0970910:intron | 25.0% |
!!! | TTTTTTTGTTGTTAACACTC+CGG | + | chr6_4:2562891-2562910 | Msa0970910:intron | 25.0% |
! | ATCTAAACTTTGGATTATCA+CGG | - | chr6_4:2562933-2562952 | None:intergenic | 25.0% |
!!! | ATCGATTTTTATGGTAACAA+TGG | - | chr6_4:2563049-2563068 | None:intergenic | 25.0% |
!!! | ATGGATTCAATCGATTTTTA+TGG | - | chr6_4:2563058-2563077 | None:intergenic | 25.0% |
! | ATAATCAATCAAATTGAAGG+TGG | - | chr6_4:2563163-2563182 | None:intergenic | 25.0% |
! | TGAAAATGAATCTCTCAAAA+AGG | - | chr6_4:2563256-2563275 | None:intergenic | 25.0% |
! | CATAGTTAGGATTAAATACT+AGG | + | chr6_4:2563536-2563555 | Msa0970910:intron | 25.0% |
! | CACAAACACTTCTTAAATTA+GGG | + | chr6_4:2563799-2563818 | Msa0970910:intron | 25.0% |
!!! | TATTTTTTCAGTATTTGCGT+TGG | - | chr6_4:2563847-2563866 | None:intergenic | 25.0% |
!! | AATTTGCTTATAATAGTGAC+CGG | + | chr6_4:2564129-2564148 | Msa0970910:intron | 25.0% |
!!! | AACTTGTAGTTCTAGAAAAT+TGG | + | chr6_4:2564738-2564757 | Msa0970910:intron | 25.0% |
! | ACAGTCTAATATTATGAGTT+GGG | - | chr6_4:2564910-2564929 | None:intergenic | 25.0% |
! | TACAGTCTAATATTATGAGT+TGG | - | chr6_4:2564911-2564930 | None:intergenic | 25.0% |
! | TGAATGTACACAAAATCAAA+TGG | - | chr6_4:2565110-2565129 | None:intergenic | 25.0% |
! | ATACCAAATATATCATACCA+TGG | + | chr6_4:2565278-2565297 | Msa0970910:intron | 25.0% |
! | ATACCATGGTATGATATATT+TGG | - | chr6_4:2565284-2565303 | None:intergenic | 25.0% |
!! | TTAAGATGAAGTATCAAACT+TGG | + | chr6_4:2565674-2565693 | Msa0970910:CDS | 25.0% |
!! | TAAGATGAAGTATCAAACTT+GGG | + | chr6_4:2565675-2565694 | Msa0970910:CDS | 25.0% |
! | ATTAGTGATAAAAACCCTTT+AGG | + | chr6_4:2565946-2565965 | Msa0970910:CDS | 25.0% |
! | TTAGTGATAAAAACCCTTTA+GGG | + | chr6_4:2565947-2565966 | Msa0970910:CDS | 25.0% |
!!! | AGGTTTGAAAGATTTTGAAA+AGG | - | chr6_4:2566294-2566313 | None:intergenic | 25.0% |
! | TTCATTAAGTAGATGTTCAT+GGG | - | chr6_4:2566319-2566338 | None:intergenic | 25.0% |
! | ATTCATTAAGTAGATGTTCA+TGG | - | chr6_4:2566320-2566339 | None:intergenic | 25.0% |
TCAAGATAAAATCATCGAGA+TGG | + | chr6_4:2559211-2559230 | Msa0970910:intron | 30.0% | |
CTCCAAACAAATTAAAGAAG+AGG | - | chr6_4:2559322-2559341 | None:intergenic | 30.0% | |
! | GATGTATCTCGATAATTTTG+GGG | + | chr6_4:2559383-2559402 | Msa0970910:intron | 30.0% |
!!! | CTTTGATTGTGCGTTTTTTA+TGG | + | chr6_4:2559550-2559569 | Msa0970910:intron | 30.0% |
! | TTGTCATTTGAACAACTTAG+AGG | + | chr6_4:2559968-2559987 | Msa0970910:intron | 30.0% |
ATCTATGGAACTCATTCAAA+AGG | + | chr6_4:2560379-2560398 | Msa0970910:CDS | 30.0% | |
GATAACATTGCAAAAGAGAA+AGG | + | chr6_4:2560415-2560434 | Msa0970910:CDS | 30.0% | |
AACATCAACATCACAAAGAA+TGG | - | chr6_4:2560471-2560490 | None:intergenic | 30.0% | |
ACTATGACACAACAATTGAT+AGG | + | chr6_4:2560591-2560610 | Msa0970910:CDS | 30.0% | |
TAAAGATGATGTATCCAACT+TGG | + | chr6_4:2560702-2560721 | Msa0970910:CDS | 30.0% | |
AAAGATGATGTATCCAACTT+GGG | + | chr6_4:2560703-2560722 | Msa0970910:CDS | 30.0% | |
AACAATTGAGGTCATTTGTT+AGG | + | chr6_4:2560753-2560772 | Msa0970910:intron | 30.0% | |
TCAAGTAAGGAGAACTAATA+AGG | - | chr6_4:2560853-2560872 | None:intergenic | 30.0% | |
! | ATAAAAATCCCATAGGGTTT+TGG | + | chr6_4:2560957-2560976 | Msa0970910:CDS | 30.0% |
AACATTAGCATTAACCTGAT+GGG | - | chr6_4:2561077-2561096 | None:intergenic | 30.0% | |
TAACATTAGCATTAACCTGA+TGG | - | chr6_4:2561078-2561097 | None:intergenic | 30.0% | |
!!! | CTTCTTCTTCATATCGATTT+TGG | - | chr6_4:2561110-2561129 | None:intergenic | 30.0% |
CAAAATCGATATGAAGAAGA+AGG | + | chr6_4:2561108-2561127 | Msa0970910:CDS | 30.0% | |
TTGCCATCATACTATTACAA+TGG | + | chr6_4:2561154-2561173 | Msa0970910:CDS | 30.0% | |
AAAGTAGATATTCATGGGAT+AGG | - | chr6_4:2561246-2561265 | None:intergenic | 30.0% | |
TCCCATGAATATCTACTTTA+TGG | + | chr6_4:2561247-2561266 | Msa0970910:CDS | 30.0% | |
ACTTTATGGATCCTATGATA+TGG | + | chr6_4:2561261-2561280 | Msa0970910:CDS | 30.0% | |
TTTAAGTGGAACAAATAGCT+TGG | + | chr6_4:2561462-2561481 | Msa0970910:intron | 30.0% | |
! | ACTTTAGCAGTAAGCATTTT+TGG | - | chr6_4:2561793-2561812 | None:intergenic | 30.0% |
TATGTCACGGAACAAATATT+CGG | + | chr6_4:2562096-2562115 | Msa0970910:intron | 30.0% | |
!! | GTTTTAACCTTTTGAAAGTC+GGG | - | chr6_4:2562412-2562431 | None:intergenic | 30.0% |
TACGACTTTGATTCCAATTA+GGG | - | chr6_4:2562545-2562564 | None:intergenic | 30.0% | |
TTACGACTTTGATTCCAATT+AGG | - | chr6_4:2562546-2562565 | None:intergenic | 30.0% | |
GACAATGCATAAAATATGCA+AGG | + | chr6_4:2562813-2562832 | Msa0970910:intron | 30.0% | |
!!! | AAGAGATTATTTTTTCGTGG+TGG | - | chr6_4:2562858-2562877 | None:intergenic | 30.0% |
TGAAAATGAATGGCCAAAAA+AGG | - | chr6_4:2563196-2563215 | None:intergenic | 30.0% | |
GAAGAAGAAGAAGAAAAACA+AGG | + | chr6_4:2563377-2563396 | Msa0970910:intron | 30.0% | |
! | GTTTTGTAAAATCATCGAGA+TGG | + | chr6_4:2563501-2563520 | Msa0970910:intron | 30.0% |
AGGATTAAATACTAGGTTCA+AGG | + | chr6_4:2563543-2563562 | Msa0970910:intron | 30.0% | |
GAGATTATGCATTTCATTGA+TGG | - | chr6_4:2563584-2563603 | None:intergenic | 30.0% | |
! | TTGCAAAAATAGCTTTTGAG+AGG | + | chr6_4:2563721-2563740 | Msa0970910:intron | 30.0% |
!! | TAAGAAGTGTTTGTGCTTTA+TGG | - | chr6_4:2563794-2563813 | None:intergenic | 30.0% |
GCACAAACACTTCTTAAATT+AGG | + | chr6_4:2563798-2563817 | Msa0970910:intron | 30.0% | |
CATTCAATCAATGATGTATG+TGG | + | chr6_4:2564055-2564074 | Msa0970910:intron | 30.0% | |
! | TAAAAGCTCGACTTCTTTTT+CGG | - | chr6_4:2564614-2564633 | None:intergenic | 30.0% |
! | TCTTTTTGTCAGCATCATAA+TGG | + | chr6_4:2564661-2564680 | Msa0970910:intron | 30.0% |
TGGATTTGAACAAGTAGTAA+GGG | - | chr6_4:2564843-2564862 | None:intergenic | 30.0% | |
ATGGATTTGAACAAGTAGTA+AGG | - | chr6_4:2564844-2564863 | None:intergenic | 30.0% | |
TCTCTGCATCTAACAAATAA+TGG | - | chr6_4:2564863-2564882 | None:intergenic | 30.0% | |
TTGGGACACTAAAGATATAT+AGG | - | chr6_4:2564892-2564911 | None:intergenic | 30.0% | |
ATAATCATGTGTTCATACCA+TGG | - | chr6_4:2565298-2565317 | None:intergenic | 30.0% | |
GTATTGCAAAAGAGAAAGAT+TGG | + | chr6_4:2565391-2565410 | Msa0970910:CDS | 30.0% | |
TGGTTTGATGAAAAAAGTTG+AGG | + | chr6_4:2565411-2565430 | Msa0970910:CDS | 30.0% | |
GATGAATCTTTCAATTCTCT+TGG | + | chr6_4:2565697-2565716 | Msa0970910:CDS | 30.0% | |
AACAATTGAGGTTATTTGCT+AGG | + | chr6_4:2565725-2565744 | Msa0970910:CDS | 30.0% | |
CTAAAGATGAATATGCTAGA+AGG | + | chr6_4:2565778-2565797 | Msa0970910:CDS | 30.0% | |
TCACTAATATTCATCAATGG+AGG | - | chr6_4:2565934-2565953 | None:intergenic | 30.0% | |
!!! | ATAAAAACCCTTTAGGGTTT+TGG | + | chr6_4:2565953-2565972 | Msa0970910:CDS | 30.0% |
TAAAATCAATCTGCTTGCAA+GGG | - | chr6_4:2566116-2566135 | None:intergenic | 30.0% | |
TTAAAATCAATCTGCTTGCA+AGG | - | chr6_4:2566117-2566136 | None:intergenic | 30.0% | |
!! | GCAAGCAGATTGATTTTAAT+TGG | + | chr6_4:2566118-2566137 | Msa0970910:CDS | 30.0% |
TGTTCAACTACATGTATGAA+AGG | + | chr6_4:2566370-2566389 | Msa0970910:CDS | 30.0% | |
AAACGCACAATCAAAGTAGT+TGG | - | chr6_4:2559546-2559565 | None:intergenic | 35.0% | |
! | ATAATTGTCTTAGAGGTGTG+TGG | - | chr6_4:2559887-2559906 | None:intergenic | 35.0% |
! | TTCTCAAAAGTGCATTCTCA+TGG | - | chr6_4:2560055-2560074 | None:intergenic | 35.0% |
TGTAACTTATCATGCATGCA+AGG | - | chr6_4:2560200-2560219 | None:intergenic | 35.0% | |
ACATTGCAAAAGAGAAAGGA+TGG | + | chr6_4:2560419-2560438 | Msa0970910:CDS | 35.0% | |
!! | TTTCAGGTTCAACATATCCT+TGG | - | chr6_4:2560526-2560545 | None:intergenic | 35.0% |
GATATGTTGAACCTGAAACA+TGG | + | chr6_4:2560528-2560547 | Msa0970910:intron | 35.0% | |
TCTTGAACATCATAGGTCTT+AGG | - | chr6_4:2560620-2560639 | None:intergenic | 35.0% | |
TTTACAAAGTGCGTAAAGAG+AGG | + | chr6_4:2560678-2560697 | Msa0970910:CDS | 35.0% | |
TTGTAAGATTCATCCCAAGT+TGG | - | chr6_4:2560719-2560738 | None:intergenic | 35.0% | |
! | CTTTTGGATACGAACAATTG+AGG | + | chr6_4:2560741-2560760 | Msa0970910:CDS | 35.0% |
!! | GAGGTCATTTGTTAGGTTTT+TGG | + | chr6_4:2560760-2560779 | Msa0970910:intron | 35.0% |
! | AATTTTCCCTTGAGACATGT+TGG | - | chr6_4:2560912-2560931 | None:intergenic | 35.0% |
TTGTGAACTGGAAACCATAA+GGG | - | chr6_4:2561014-2561033 | None:intergenic | 35.0% | |
TTTGTGAACTGGAAACCATA+AGG | - | chr6_4:2561015-2561034 | None:intergenic | 35.0% | |
AATATGCTTGCAAGGGTAAT+AGG | - | chr6_4:2561041-2561060 | None:intergenic | 35.0% | |
TAGCATCAATATGCTTGCAA+GGG | - | chr6_4:2561048-2561067 | None:intergenic | 35.0% | |
TTAGCATCAATATGCTTGCA+AGG | - | chr6_4:2561049-2561068 | None:intergenic | 35.0% | |
! | TTTGCAAGATTCTGAAAAGG+AGG | - | chr6_4:2561223-2561242 | None:intergenic | 35.0% |
! | AGGTTTGCAAGATTCTGAAA+AGG | - | chr6_4:2561226-2561245 | None:intergenic | 35.0% |
ATGGATGTCTAATGCATTAC+AGG | - | chr6_4:2561334-2561353 | None:intergenic | 35.0% | |
!!! | AGGGTGACGATTTTTTTTCT+TGG | + | chr6_4:2561438-2561457 | Msa0970910:intron | 35.0% |
ATCCAGACTTTAGATACATG+TGG | + | chr6_4:2561564-2561583 | Msa0970910:intron | 35.0% | |
GTAAGAAACACAAAAACTCG+CGG | + | chr6_4:2561665-2561684 | Msa0970910:intron | 35.0% | |
TAAACTCACATACAACTGTG+AGG | - | chr6_4:2562023-2562042 | None:intergenic | 35.0% | |
TAACTAGACACAATGCCATA+TGG | + | chr6_4:2562212-2562231 | Msa0970910:intron | 35.0% | |
! | TGTGATGATAGTGAACCATA+TGG | - | chr6_4:2562230-2562249 | None:intergenic | 35.0% |
TGGGTTATTAACTAGTACCA+TGG | + | chr6_4:2562265-2562284 | Msa0970910:intron | 35.0% | |
CTAACAAATGACATACACCA+TGG | - | chr6_4:2562285-2562304 | None:intergenic | 35.0% | |
AGTTATACCCGACTTTCAAA+AGG | + | chr6_4:2562402-2562421 | Msa0970910:intron | 35.0% | |
! | AACCTATTTTCACCCCTAAT+TGG | + | chr6_4:2562529-2562548 | Msa0970910:intron | 35.0% |
TTCCAATTAGGGGTGAAAAT+AGG | - | chr6_4:2562534-2562553 | None:intergenic | 35.0% | |
ACGACTTTGATTCCAATTAG+GGG | - | chr6_4:2562544-2562563 | None:intergenic | 35.0% | |
! | TAAGCTTAGTTCAGTTGGTA+TGG | + | chr6_4:2562791-2562810 | Msa0970910:intron | 35.0% |
TGCATAAAATATGCAAGGTC+TGG | + | chr6_4:2562818-2562837 | Msa0970910:intron | 35.0% | |
GCATAAAATATGCAAGGTCT+GGG | + | chr6_4:2562819-2562838 | Msa0970910:intron | 35.0% | |
CATAAAATATGCAAGGTCTG+GGG | + | chr6_4:2562820-2562839 | Msa0970910:intron | 35.0% | |
!! | TTGAGTGTTGATACTATCTG+AGG | + | chr6_4:2563612-2563631 | Msa0970910:intron | 35.0% |
CTGCTTAGACAATAGAAAGA+TGG | - | chr6_4:2563771-2563790 | None:intergenic | 35.0% | |
ATGGATATAGACACGAACAT+CGG | - | chr6_4:2563949-2563968 | None:intergenic | 35.0% | |
TGTCTATATCCATGCTTCAT+AGG | + | chr6_4:2563956-2563975 | Msa0970910:intron | 35.0% | |
TAACTCATATATACTCCCTC+CGG | + | chr6_4:2563998-2564017 | Msa0970910:intron | 35.0% | |
TGTTTATAATAGTGACCGGA+GGG | - | chr6_4:2564016-2564035 | None:intergenic | 35.0% | |
TTGTTTATAATAGTGACCGG+AGG | - | chr6_4:2564017-2564036 | None:intergenic | 35.0% | |
! | CGAAGTTTTTCATATGCAAG+AGG | + | chr6_4:2564776-2564795 | Msa0970910:intron | 35.0% |
AACTCCTAACCACTTGTTTA+AGG | + | chr6_4:2564808-2564827 | Msa0970910:intron | 35.0% | |
ACTCCTAACCACTTGTTTAA+GGG | + | chr6_4:2564809-2564828 | Msa0970910:intron | 35.0% | |
TAGAGTTGTCAAGTTCTCAA+AGG | - | chr6_4:2564934-2564953 | None:intergenic | 35.0% | |
TATATTGTGTTCGCAGCAAA+TGG | + | chr6_4:2565315-2565334 | Msa0970910:intron | 35.0% | |
ATATTGTGTTCGCAGCAAAT+GGG | + | chr6_4:2565316-2565335 | Msa0970910:intron | 35.0% | |
ATCTGTGGAATTCATTCCAA+AGG | + | chr6_4:2565351-2565370 | Msa0970910:CDS | 35.0% | |
TCATTCCAAAGGAGAAATCT+AGG | + | chr6_4:2565362-2565381 | Msa0970910:CDS | 35.0% | |
ATCTTCCTAGATTTCTCCTT+TGG | - | chr6_4:2565370-2565389 | None:intergenic | 35.0% | |
AGGTGCAAAGAATTCTTCAA+AGG | + | chr6_4:2560567-2560586 | Msa0970910:intron | 35.0% | |
CTTGGATTTGAGTCTAAGTA+GGG | - | chr6_4:2565865-2565884 | None:intergenic | 35.0% | |
ACTTGGATTTGAGTCTAAGT+AGG | - | chr6_4:2565866-2565885 | None:intergenic | 35.0% | |
!!! | CATACCGATTTTGAGATCAT+TGG | - | chr6_4:2566169-2566188 | None:intergenic | 35.0% |
TTAGCACCACACTATTACAA+CGG | + | chr6_4:2566222-2566241 | Msa0970910:CDS | 35.0% | |
GTATTTCCGTTGTAATAGTG+TGG | - | chr6_4:2566231-2566250 | None:intergenic | 35.0% | |
!! | AGATTTTGAAAAGGAAGAGC+AGG | - | chr6_4:2566285-2566304 | None:intergenic | 35.0% |
TAAGTAGATGTTCATGGGAT+AGG | - | chr6_4:2566314-2566333 | None:intergenic | 35.0% | |
GCTGTGAGCATAACTCAATT+AGG | + | chr6_4:2559103-2559122 | Msa0970910:intron | 40.0% | |
CTTCTTCTGATCTCCATTAG+TGG | + | chr6_4:2559287-2559306 | Msa0970910:intron | 40.0% | |
! | TTGTTTGGAGCCTCTAGTTT+AGG | + | chr6_4:2559332-2559351 | Msa0970910:intron | 40.0% |
! | TGTTTGGAGCCTCTAGTTTA+GGG | + | chr6_4:2559333-2559352 | Msa0970910:intron | 40.0% |
TCACATGAAGTAGCATCTAG+AGG | - | chr6_4:2559726-2559745 | None:intergenic | 40.0% | |
GCATTCTCATGGTATGAGTT+GGG | - | chr6_4:2560044-2560063 | None:intergenic | 40.0% | |
TGCATTCTCATGGTATGAGT+TGG | - | chr6_4:2560045-2560064 | None:intergenic | 40.0% | |
TGTTCATAGAAAATGGGTCG+TGG | + | chr6_4:2560350-2560369 | Msa0970910:intron | 40.0% | |
TTGTCTTTAGGCCATGTTTC+AGG | - | chr6_4:2560542-2560561 | None:intergenic | 40.0% | |
ATGGCCTAAAGACAAAAGAG+AGG | + | chr6_4:2560547-2560566 | Msa0970910:intron | 40.0% | |
! | TGCACCTCTCTTTTGTCTTT+AGG | - | chr6_4:2560554-2560573 | None:intergenic | 40.0% |
! | CCTGAATTTGAGGTCAAGTA+AGG | - | chr6_4:2560866-2560885 | None:intergenic | 40.0% |
CCTTACTTGACCTCAAATTC+AGG | + | chr6_4:2560863-2560882 | Msa0970910:CDS | 40.0% | |
!! | GAAGTTGGTACCTGAATTTG+AGG | - | chr6_4:2560876-2560895 | None:intergenic | 40.0% |
GGTATGCATGAGATTGAAGT+TGG | - | chr6_4:2560891-2560910 | None:intergenic | 40.0% | |
ATGCATACCAACATGTCTCA+AGG | + | chr6_4:2560902-2560921 | Msa0970910:CDS | 40.0% | |
TGCATACCAACATGTCTCAA+GGG | + | chr6_4:2560903-2560922 | Msa0970910:CDS | 40.0% | |
TGAATTGGCCAAAACCCTAT+GGG | - | chr6_4:2560968-2560987 | None:intergenic | 40.0% | |
TTGAATTGGCCAAAACCCTA+TGG | - | chr6_4:2560969-2560988 | None:intergenic | 40.0% | |
!! | AGGGTTTTGGCCAATTCAAT+TGG | + | chr6_4:2560970-2560989 | Msa0970910:CDS | 40.0% |
! | GAGCTTTGTGCCAATTGAAT+TGG | - | chr6_4:2560983-2561002 | None:intergenic | 40.0% |
! | GTAATAGGAGCTTTGTGAAC+TGG | - | chr6_4:2561026-2561045 | None:intergenic | 40.0% |
GCAAGCATATTGATGCTAAC+TGG | + | chr6_4:2561050-2561069 | Msa0970910:intron | 40.0% | |
! | AGATTCTGAAAAGGAGGAGT+AGG | - | chr6_4:2561217-2561236 | None:intergenic | 40.0% |
CAACTGTTCAACTCCATGAA+TGG | + | chr6_4:2561298-2561317 | Msa0970910:CDS | 40.0% | |
! | CTCCACATGTATCTAAAGTC+TGG | - | chr6_4:2561569-2561588 | None:intergenic | 40.0% |
!! | GGAATTGCTAAGTATTGGCT+TGG | - | chr6_4:2561748-2561767 | None:intergenic | 40.0% |
CATCGTAAGCTTAGTTCAGT+TGG | + | chr6_4:2562786-2562805 | Msa0970910:intron | 40.0% | |
!!! | TTATTTTTTCGTGGTGGCCA+GGG | - | chr6_4:2562852-2562871 | None:intergenic | 40.0% |
!!! | ATTATTTTTTCGTGGTGGCC+AGG | - | chr6_4:2562853-2562872 | None:intergenic | 40.0% |
! | TATCTGAGGCTTCGATTTAG+AGG | + | chr6_4:2563626-2563645 | Msa0970910:intron | 40.0% |
TATTAACTGTGTCTGCGTGT+CGG | + | chr6_4:2563903-2563922 | Msa0970910:intron | 40.0% | |
TTGCTTATAATAGTGACCGG+AGG | + | chr6_4:2564132-2564151 | Msa0970910:intron | 40.0% | |
TGCTTATAATAGTGACCGGA+GGG | + | chr6_4:2564133-2564152 | Msa0970910:intron | 40.0% | |
CTCCTAACCACTTGTTTAAG+GGG | + | chr6_4:2564810-2564829 | Msa0970910:intron | 40.0% | |
AACCCCTTAAACAAGTGGTT+AGG | - | chr6_4:2564815-2564834 | None:intergenic | 40.0% | |
AGTTCAACCCCTTAAACAAG+TGG | - | chr6_4:2564820-2564839 | None:intergenic | 40.0% | |
AGAGCAGCAAGACAAATGAA+AGG | - | chr6_4:2565142-2565161 | None:intergenic | 40.0% | |
!! | AGCATCGACATCACAAAGAA+TGG | - | chr6_4:2565443-2565462 | None:intergenic | 40.0% |
CTTTATGCTCCCAACTTTGA+AGG | + | chr6_4:2565472-2565491 | Msa0970910:CDS | 40.0% | |
! | TGCACCTCTTTTGTGTCTTT+CGG | - | chr6_4:2565526-2565545 | None:intergenic | 40.0% |
AAACTTCTCTTTGCGCACTT+TGG | - | chr6_4:2565656-2565675 | None:intergenic | 40.0% | |
CTCTTGGAGATGAACAATTG+AGG | + | chr6_4:2565713-2565732 | Msa0970910:CDS | 40.0% | |
! | GAGGTTATTTGCTAGGATCT+TGG | + | chr6_4:2565732-2565751 | Msa0970910:CDS | 40.0% |
TATGCTAGAAGGAGATCTTC+TGG | + | chr6_4:2565789-2565808 | Msa0970910:CDS | 40.0% | |
ATGCTAGAAGGAGATCTTCT+GGG | + | chr6_4:2565790-2565809 | Msa0970910:CDS | 40.0% | |
!!! | TGTTGTTTTGCACGAGATTG+AGG | - | chr6_4:2565891-2565910 | None:intergenic | 40.0% |
TAAGTGGCCAAAACCCTAAA+GGG | - | chr6_4:2565963-2565982 | None:intergenic | 40.0% | |
ATAAGTGGCCAAAACCCTAA+AGG | - | chr6_4:2565964-2565983 | None:intergenic | 40.0% | |
!! | AGGGTTTTGGCCACTTATAT+CGG | + | chr6_4:2565966-2565985 | Msa0970910:CDS | 40.0% |
GCAGTTGAAACCATATGAGA+GGG | - | chr6_4:2566006-2566025 | None:intergenic | 40.0% | |
TGCAGTTGAAACCATATGAG+AGG | - | chr6_4:2566007-2566026 | None:intergenic | 40.0% | |
AAGCTCTCAACCTTCTTCTA+TGG | + | chr6_4:2566029-2566048 | Msa0970910:CDS | 40.0% | |
CTTCTACCATGTAGAGTCTA+AGG | + | chr6_4:2566068-2566087 | Msa0970910:CDS | 40.0% | |
GGCATTAGCATCAACATGAT+GGG | - | chr6_4:2566145-2566164 | None:intergenic | 40.0% | |
TGGCATTAGCATCAACATGA+TGG | - | chr6_4:2566146-2566165 | None:intergenic | 40.0% | |
GCCACCAATGATCTCAAAAT+CGG | + | chr6_4:2566162-2566181 | Msa0970910:CDS | 40.0% | |
!!! | ACCGATTTTGAGATCATTGG+TGG | - | chr6_4:2566166-2566185 | None:intergenic | 40.0% |
! | GTTTGGAGCCTCTAGTTTAG+GGG | + | chr6_4:2559334-2559353 | Msa0970910:intron | 45.0% |
CATATGCACCCCTAAACTAG+AGG | - | chr6_4:2559345-2559364 | None:intergenic | 45.0% | |
TTGGCTACAAGCAAGTGCTA+TGG | + | chr6_4:2559691-2559710 | Msa0970910:intron | 45.0% | |
TGGCTACAAGCAAGTGCTAT+GGG | + | chr6_4:2559692-2559711 | Msa0970910:intron | 45.0% | |
GGGTCGTGGAAGAATATCTA+TGG | + | chr6_4:2560364-2560383 | Msa0970910:CDS | 45.0% | |
! | TATCCTTGGCCTTCAAGGTT+GGG | - | chr6_4:2560512-2560531 | None:intergenic | 45.0% |
! | ATATCCTTGGCCTTCAAGGT+TGG | - | chr6_4:2560513-2560532 | None:intergenic | 45.0% |
! | CAACATATCCTTGGCCTTCA+AGG | - | chr6_4:2560517-2560536 | None:intergenic | 45.0% |
GCGAAAAGATGAATCGCACA+AGG | + | chr6_4:2560820-2560839 | Msa0970910:CDS | 45.0% | |
AAGCTCTCAACCTTCCCTTA+TGG | + | chr6_4:2560997-2561016 | Msa0970910:CDS | 45.0% | |
GAACTGGAAACCATAAGGGA+AGG | - | chr6_4:2561010-2561029 | None:intergenic | 45.0% | |
AGGCTACTTCGTTCCATTCA+TGG | - | chr6_4:2561314-2561333 | None:intergenic | 45.0% | |
CAGCAGCACACCAAAACTAT+GGG | + | chr6_4:2561830-2561849 | Msa0970910:intron | 45.0% | |
AGCAGCACACCAAAACTATG+GGG | + | chr6_4:2561831-2561850 | Msa0970910:intron | 45.0% | |
CACACCAAAACTATGGGGAT+GGG | + | chr6_4:2561836-2561855 | Msa0970910:intron | 45.0% | |
! | CAATCCCATCCCCATAGTTT+TGG | - | chr6_4:2561843-2561862 | None:intergenic | 45.0% |
GGGATTGAAAGTTGAGAGAG+AGG | + | chr6_4:2561856-2561875 | Msa0970910:intron | 45.0% | |
TTGAGAGAGAGGATGAGAAG+AGG | + | chr6_4:2561867-2561886 | Msa0970910:intron | 45.0% | |
TGAGAGAGAGGATGAGAAGA+GGG | + | chr6_4:2561868-2561887 | Msa0970910:intron | 45.0% | |
TCGTGATACGGATTCGAACT+CGG | + | chr6_4:2561995-2562014 | Msa0970910:intron | 45.0% | |
GACTGCTTACCTATGAAGCA+TGG | - | chr6_4:2563968-2563987 | None:intergenic | 45.0% | |
! | TACCCTTGGCCTTCAAAGTT+GGG | - | chr6_4:2565484-2565503 | None:intergenic | 45.0% |
! | ATACCCTTGGCCTTCAAAGT+TGG | - | chr6_4:2565485-2565504 | None:intergenic | 45.0% |
!! | TTTCGGCCATGTTTCAGGTT+CGG | - | chr6_4:2565509-2565528 | None:intergenic | 45.0% |
ATGGCCGAAAGACACAAAAG+AGG | + | chr6_4:2565519-2565538 | Msa0970910:CDS | 45.0% | |
!! | GGGTTTTGGCCACTTATATC+GGG | + | chr6_4:2565967-2565986 | Msa0970910:CDS | 45.0% |
! | GAGCTTTGACCCGATATAAG+TGG | - | chr6_4:2565979-2565998 | None:intergenic | 45.0% |
AAGCTCTCAACCCTCTCATA+TGG | + | chr6_4:2565993-2566012 | Msa0970910:CDS | 45.0% | |
! | TACCATGTAGAGTCTAAGGC+AGG | + | chr6_4:2566072-2566091 | Msa0970910:CDS | 45.0% |
TACCTGCCTTAGACTCTACA+TGG | - | chr6_4:2566077-2566096 | None:intergenic | 45.0% | |
!! | TATATATATATATATAATAC+AGG | + | chr6_4:2561524-2561543 | Msa0970910:intron | 5.0% |
GAGGTTGCACACTCCACTAA+TGG | - | chr6_4:2559303-2559322 | None:intergenic | 50.0% | |
! | CTTCAAGGTTGGGAGCATAC+AGG | - | chr6_4:2560502-2560521 | None:intergenic | 50.0% |
CTGTATGCTCCCAACCTTGA+AGG | + | chr6_4:2560500-2560519 | Msa0970910:CDS | 50.0% | |
TGATGCTAACTGGACCCATC+AGG | + | chr6_4:2561060-2561079 | Msa0970910:intron | 50.0% | |
GGAGGAGTAGGCATAGCAAT+AGG | - | chr6_4:2561205-2561224 | None:intergenic | 50.0% | |
TATAATACAGGCCGGACGTC+AGG | + | chr6_4:2561536-2561555 | Msa0970910:intron | 50.0% | |
ATAATACAGGCCGGACGTCA+GGG | + | chr6_4:2561537-2561556 | Msa0970910:intron | 50.0% | |
GCAGCAGCACACCAAAACTA+TGG | + | chr6_4:2561829-2561848 | Msa0970910:intron | 50.0% | |
GCACACCAAAACTATGGGGA+TGG | + | chr6_4:2561835-2561854 | Msa0970910:intron | 50.0% | |
! | TGTGGAGCTTTAGCTCCACA+TGG | + | chr6_4:2561943-2561962 | Msa0970910:intron | 50.0% |
CGTGATACGGATTCGAACTC+GGG | + | chr6_4:2561996-2562015 | Msa0970910:intron | 50.0% | |
ACACTCCGGTCTCAAGAGAA+AGG | + | chr6_4:2562905-2562924 | Msa0970910:intron | 50.0% | |
CACTCCGGTCTCAAGAGAAA+GGG | + | chr6_4:2562906-2562925 | Msa0970910:intron | 50.0% | |
ACACACACACATACTCCCTC+CGG | - | chr6_4:2564151-2564170 | None:intergenic | 50.0% | |
! | CTCCCAACTTTGAAGGCCAA+GGG | + | chr6_4:2565479-2565498 | Msa0970910:CDS | 50.0% |
!! | TTTCAGGTTCGGCATACCCT+TGG | - | chr6_4:2565498-2565517 | None:intergenic | 50.0% |
GGTATGCCGAACCTGAAACA+TGG | + | chr6_4:2565500-2565519 | Msa0970910:CDS | 50.0% | |
GTGTCTTTCGGCCATGTTTC+AGG | - | chr6_4:2565514-2565533 | None:intergenic | 50.0% | |
TGCACGAGATTGAGGCTACT+TGG | - | chr6_4:2565883-2565902 | None:intergenic | 50.0% | |
GCTCGGGAAACCATAGAAGA+AGG | - | chr6_4:2566042-2566061 | None:intergenic | 50.0% | |
ATGGTAGAAGCTCTGTGCTC+GGG | - | chr6_4:2566058-2566077 | None:intergenic | 50.0% | |
CATGGTAGAAGCTCTGTGCT+CGG | - | chr6_4:2566059-2566078 | None:intergenic | 50.0% | |
GGAAGAGCAGGCATAGCAAT+GGG | - | chr6_4:2566273-2566292 | None:intergenic | 50.0% | |
AGGAAGAGCAGGCATAGCAA+TGG | - | chr6_4:2566274-2566293 | None:intergenic | 50.0% | |
TAATACAGGCCGGACGTCAG+GGG | + | chr6_4:2561538-2561557 | Msa0970910:intron | 55.0% | |
!!! | GGTGTGCTGCTGCTTTTGTG+TGG | - | chr6_4:2561822-2561841 | None:intergenic | 55.0% |
!! | GGATGCACATTGGTGCCATG+TGG | - | chr6_4:2561961-2561980 | None:intergenic | 55.0% |
CGAATCCGTATCACGACGTC+CGG | - | chr6_4:2561991-2562010 | None:intergenic | 55.0% | |
! | AAGGTCTGGGGTTCAAACCC+TGG | + | chr6_4:2562832-2562851 | Msa0970910:intron | 55.0% |
CGGTCCCTTTCTCTTGAGAC+CGG | - | chr6_4:2562913-2562932 | None:intergenic | 55.0% | |
GGAGAGACACAGTGTGTGAG+AGG | + | chr6_4:2563310-2563329 | Msa0970910:intron | 55.0% | |
TGTTCGCAGCAAATGGGTCG+TGG | + | chr6_4:2565322-2565341 | Msa0970910:intron | 55.0% | |
!! | GGGTCGTGGAAGAGTATCTG+TGG | + | chr6_4:2565336-2565355 | Msa0970910:intron | 55.0% |
! | GCTCCCAACTTTGAAGGCCA+AGG | + | chr6_4:2565478-2565497 | Msa0970910:CDS | 55.0% |
GCTCCCAACCTTGAAGGCCA+AGG | + | chr6_4:2560506-2560525 | Msa0970910:CDS | 60.0% | |
CAATGTGCATCCGCCCCTGC+CGG | + | chr6_4:2561969-2561988 | Msa0970910:intron | 65.0% | |
CGTATCACGACGTCCGGCAG+GGG | - | chr6_4:2561985-2562004 | None:intergenic | 65.0% | |
CCGTATCACGACGTCCGGCA+GGG | - | chr6_4:2561986-2562005 | None:intergenic | 65.0% | |
CCCTGCCGGACGTCGTGATA+CGG | + | chr6_4:2561983-2562002 | Msa0970910:intron | 65.0% | |
TCCGTATCACGACGTCCGGC+AGG | - | chr6_4:2561987-2562006 | None:intergenic | 65.0% | |
TACAGGCCGGACGTCAGGGG+CGG | + | chr6_4:2561541-2561560 | Msa0970910:intron | 70.0% | |
CTGGATCCGCCCCTGACGTC+CGG | - | chr6_4:2561550-2561569 | None:intergenic | 70.0% | |
CGGCAGGGGCGGATGCACAT+TGG | - | chr6_4:2561971-2561990 | None:intergenic | 70.0% | |
ATCACGACGTCCGGCAGGGG+CGG | - | chr6_4:2561982-2562001 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 2558829 | 2566398 | 2558829 | ID=Msa0970910;Name=Msa0970910 |
chr6_4 | mRNA | 2558829 | 2566398 | 2558829 | ID=Msa0970910-mRNA-1;Parent=Msa0970910;Name=Msa0970910-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|0.71|0.33|0.28|7|0|639 |
chr6_4 | exon | 2558829 | 2558833 | 2558829 | ID=Msa0970910-mRNA-1:exon:1201;Parent=Msa0970910-mRNA-1 |
chr6_4 | exon | 2559269 | 2559275 | 2559269 | ID=Msa0970910-mRNA-1:exon:1202;Parent=Msa0970910-mRNA-1 |
chr6_4 | exon | 2560359 | 2560532 | 2560359 | ID=Msa0970910-mRNA-1:exon:1203;Parent=Msa0970910-mRNA-1 |
chr6_4 | exon | 2560569 | 2560762 | 2560569 | ID=Msa0970910-mRNA-1:exon:1204;Parent=Msa0970910-mRNA-1 |
chr6_4 | exon | 2560775 | 2561018 | 2560775 | ID=Msa0970910-mRNA-1:exon:1205;Parent=Msa0970910-mRNA-1 |
chr6_4 | exon | 2561082 | 2561326 | 2561082 | ID=Msa0970910-mRNA-1:exon:1206;Parent=Msa0970910-mRNA-1 |
chr6_4 | exon | 2565348 | 2566398 | 2565348 | ID=Msa0970910-mRNA-1:exon:1207;Parent=Msa0970910-mRNA-1 |
chr6_4 | CDS | 2558829 | 2558833 | 2558829 | ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1 |
chr6_4 | CDS | 2559269 | 2559275 | 2559269 | ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1 |
chr6_4 | CDS | 2560359 | 2560532 | 2560359 | ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1 |
chr6_4 | CDS | 2560569 | 2560762 | 2560569 | ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1 |
chr6_4 | CDS | 2560775 | 2561018 | 2560775 | ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1 |
chr6_4 | CDS | 2561082 | 2561326 | 2561082 | ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1 |
chr6_4 | CDS | 2565348 | 2566398 | 2565348 | ID=Msa0970910-mRNA-1:cds;Parent=Msa0970910-mRNA-1 |
Gene Sequence |
Protein sequence |