Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973110 | XP_003618147.1 | 97.436 | 117 | 3 | 0 | 1 | 117 | 1 | 117 | 3.19e-79 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973110 | sp|Q8L8Q3|LBD25_ARATH | 83.486 | 109 | 18 | 0 | 3 | 111 | 33 | 141 | 6.03e-67 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973110 | G7KQ00 | 97.436 | 117 | 3 | 0 | 1 | 117 | 1 | 117 | 1.52e-79 | 239 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0973110 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973110 | MtrunA17_Chr6g0449641 | 97.436 | 117 | 3 | 0 | 1 | 117 | 1 | 117 | 2.94e-83 | 239 |
| Msa0973110 | MtrunA17_Chr6g0449651 | 90.598 | 117 | 11 | 0 | 1 | 117 | 59 | 175 | 7.53e-78 | 228 |
| Msa0973110 | MtrunA17_Chr7g0227511 | 90.909 | 110 | 10 | 0 | 2 | 111 | 4 | 113 | 1.49e-71 | 211 |
| Msa0973110 | MtrunA17_Chr3g0117121 | 80.342 | 117 | 22 | 1 | 1 | 116 | 1 | 117 | 3.57e-66 | 198 |
| Msa0973110 | MtrunA17_Chr4g0058651 | 80.909 | 110 | 21 | 0 | 7 | 116 | 9 | 118 | 7.10e-65 | 194 |
| Msa0973110 | MtrunA17_Chr5g0437571 | 62.069 | 116 | 44 | 0 | 6 | 121 | 3 | 118 | 1.80e-50 | 157 |
| Msa0973110 | MtrunA17_Chr4g0043421 | 62.727 | 110 | 41 | 0 | 8 | 117 | 14 | 123 | 5.11e-50 | 156 |
| Msa0973110 | MtrunA17_Chr5g0402611 | 67.290 | 107 | 35 | 0 | 3 | 109 | 2 | 108 | 2.47e-49 | 159 |
| Msa0973110 | MtrunA17_Chr2g0311601 | 61.468 | 109 | 41 | 1 | 8 | 115 | 12 | 120 | 3.42e-49 | 154 |
| Msa0973110 | MtrunA17_Chr3g0115431 | 66.972 | 109 | 36 | 0 | 1 | 109 | 1 | 109 | 1.97e-48 | 154 |
| Msa0973110 | MtrunA17_Chr8g0353981 | 69.643 | 112 | 32 | 1 | 1 | 112 | 1 | 110 | 2.02e-48 | 154 |
| Msa0973110 | MtrunA17_Chr3g0097221 | 65.455 | 110 | 38 | 0 | 4 | 113 | 2 | 111 | 3.43e-47 | 153 |
| Msa0973110 | MtrunA17_Chr3g0114061 | 61.062 | 113 | 42 | 1 | 6 | 116 | 5 | 117 | 3.42e-46 | 146 |
| Msa0973110 | MtrunA17_Chr3g0106101 | 56.034 | 116 | 49 | 1 | 6 | 119 | 4 | 119 | 5.95e-46 | 146 |
| Msa0973110 | MtrunA17_Chr5g0437401 | 64.151 | 106 | 38 | 0 | 6 | 111 | 8 | 113 | 7.99e-45 | 143 |
| Msa0973110 | MtrunA17_Chr3g0113891 | 68.041 | 97 | 31 | 0 | 6 | 102 | 11 | 107 | 1.18e-44 | 143 |
| Msa0973110 | MtrunA17_Chr5g0438091 | 55.172 | 116 | 52 | 0 | 6 | 121 | 36 | 151 | 1.62e-43 | 140 |
| Msa0973110 | MtrunA17_Chr3g0129071 | 59.615 | 104 | 42 | 0 | 8 | 111 | 46 | 149 | 9.49e-43 | 140 |
| Msa0973110 | MtrunA17_Chr4g0030001 | 51.754 | 114 | 54 | 1 | 8 | 120 | 23 | 136 | 3.35e-40 | 132 |
| Msa0973110 | MtrunA17_Chr5g0432451 | 57.798 | 109 | 46 | 0 | 8 | 116 | 42 | 150 | 1.34e-38 | 129 |
| Msa0973110 | MtrunA17_Chr1g0200201 | 53.774 | 106 | 49 | 0 | 10 | 115 | 73 | 178 | 4.50e-38 | 128 |
| Msa0973110 | MtrunA17_Chr7g0260971 | 57.407 | 108 | 45 | 1 | 3 | 109 | 8 | 115 | 7.53e-38 | 127 |
| Msa0973110 | MtrunA17_Chr1g0184281 | 57.547 | 106 | 44 | 1 | 6 | 110 | 12 | 117 | 1.31e-36 | 124 |
| Msa0973110 | MtrunA17_Chr8g0351701 | 55.340 | 103 | 45 | 1 | 8 | 109 | 22 | 124 | 6.38e-35 | 120 |
| Msa0973110 | MtrunA17_Chr7g0245871 | 58.333 | 96 | 39 | 1 | 9 | 103 | 27 | 122 | 7.20e-35 | 120 |
| Msa0973110 | MtrunA17_Chr8g0351721 | 53.211 | 109 | 50 | 1 | 6 | 113 | 15 | 123 | 1.05e-34 | 119 |
| Msa0973110 | MtrunA17_Chr6g0460951 | 50.000 | 104 | 51 | 1 | 8 | 110 | 39 | 142 | 2.34e-33 | 115 |
| Msa0973110 | MtrunA17_Chr7g0225111 | 51.579 | 95 | 46 | 0 | 8 | 102 | 4 | 98 | 7.19e-33 | 111 |
| Msa0973110 | MtrunA17_Chr5g0435641 | 52.041 | 98 | 46 | 1 | 7 | 103 | 5 | 102 | 1.25e-32 | 113 |
| Msa0973110 | MtrunA17_Chr8g0374601 | 49.074 | 108 | 54 | 1 | 9 | 115 | 26 | 133 | 4.11e-32 | 114 |
| Msa0973110 | MtrunA17_Chr7g0261031 | 54.082 | 98 | 44 | 1 | 6 | 102 | 5 | 102 | 8.07e-32 | 112 |
| Msa0973110 | MtrunA17_Chr5g0444351 | 52.688 | 93 | 44 | 0 | 10 | 102 | 6 | 98 | 1.60e-31 | 108 |
| Msa0973110 | MtrunA17_Chr1g0184271 | 51.579 | 95 | 45 | 1 | 9 | 102 | 12 | 106 | 8.08e-31 | 109 |
| Msa0973110 | MtrunA17_Chr8g0374591 | 43.689 | 103 | 58 | 0 | 9 | 111 | 8 | 110 | 8.07e-29 | 101 |
| Msa0973110 | MtrunA17_Chr7g0245861 | 53.763 | 93 | 40 | 2 | 6 | 95 | 9 | 101 | 1.04e-28 | 101 |
| Msa0973110 | MtrunA17_Chr6g0452661 | 45.918 | 98 | 52 | 1 | 7 | 103 | 7 | 104 | 2.37e-28 | 103 |
| Msa0973110 | MtrunA17_Chr4g0059901 | 47.000 | 100 | 53 | 0 | 10 | 109 | 11 | 110 | 2.12e-27 | 101 |
| Msa0973110 | MtrunA17_Chr8g0374581 | 47.115 | 104 | 54 | 1 | 9 | 111 | 8 | 111 | 4.61e-27 | 99.8 |
| Msa0973110 | MtrunA17_Chr6g0460941 | 48.864 | 88 | 44 | 1 | 9 | 95 | 7 | 94 | 8.96e-27 | 95.5 |
| Msa0973110 | MtrunA17_Chr6g0452671 | 41.414 | 99 | 58 | 0 | 6 | 104 | 8 | 106 | 4.62e-26 | 96.7 |
| Msa0973110 | MtrunA17_Chr6g0452691 | 42.718 | 103 | 58 | 1 | 6 | 107 | 6 | 108 | 4.67e-25 | 93.6 |
| Msa0973110 | MtrunA17_Chr2g0330201 | 43.750 | 96 | 54 | 0 | 10 | 105 | 20 | 115 | 3.49e-24 | 94.0 |
| Msa0973110 | MtrunA17_Chr8g0342351 | 42.000 | 100 | 58 | 0 | 10 | 109 | 13 | 112 | 8.13e-24 | 92.0 |
| Msa0973110 | MtrunA17_Chr4g0040831 | 41.935 | 93 | 54 | 0 | 10 | 102 | 16 | 108 | 3.71e-22 | 86.7 |
| Msa0973110 | MtrunA17_Chr4g0055441 | 40.000 | 95 | 56 | 1 | 10 | 103 | 3 | 97 | 1.78e-21 | 83.6 |
| Msa0973110 | MtrunA17_Chr5g0439111 | 41.837 | 98 | 56 | 1 | 7 | 103 | 7 | 104 | 6.07e-21 | 84.0 |
| Msa0973110 | MtrunA17_Chr2g0326041 | 58.621 | 58 | 24 | 0 | 1 | 58 | 25 | 82 | 6.16e-21 | 80.5 |
| Msa0973110 | MtrunA17_Chr2g0326051 | 47.761 | 67 | 35 | 0 | 54 | 120 | 5 | 71 | 1.20e-15 | 67.8 |
| Msa0973110 | MtrunA17_Chr4g0046201 | 31.111 | 90 | 62 | 0 | 8 | 97 | 5 | 94 | 2.64e-15 | 69.7 |
| Msa0973110 | MtrunA17_Chr6g0449311 | 34.524 | 84 | 52 | 2 | 38 | 118 | 2 | 85 | 5.89e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973110 | AT3G27650.1 | 83.486 | 109 | 18 | 0 | 3 | 111 | 33 | 141 | 6.13e-68 | 202 |
| Msa0973110 | AT5G63090.4 | 83.784 | 111 | 16 | 1 | 1 | 109 | 1 | 111 | 4.27e-65 | 196 |
| Msa0973110 | AT5G63090.3 | 83.784 | 111 | 16 | 1 | 1 | 109 | 1 | 111 | 4.27e-65 | 196 |
| Msa0973110 | AT5G63090.2 | 83.784 | 111 | 16 | 1 | 1 | 109 | 1 | 111 | 4.27e-65 | 196 |
| Msa0973110 | AT5G63090.1 | 83.784 | 111 | 16 | 1 | 1 | 109 | 1 | 111 | 4.27e-65 | 196 |
| Msa0973110 | AT2G30130.1 | 62.162 | 111 | 42 | 0 | 6 | 116 | 5 | 115 | 2.90e-49 | 155 |
| Msa0973110 | AT1G65620.1 | 76.404 | 89 | 21 | 0 | 1 | 89 | 1 | 89 | 4.87e-49 | 155 |
| Msa0973110 | AT1G65620.4 | 76.404 | 89 | 21 | 0 | 1 | 89 | 1 | 89 | 4.87e-49 | 155 |
| Msa0973110 | AT1G65620.3 | 76.404 | 89 | 21 | 0 | 1 | 89 | 1 | 89 | 4.87e-49 | 155 |
| Msa0973110 | AT1G65620.5 | 76.404 | 89 | 21 | 0 | 1 | 89 | 1 | 89 | 4.87e-49 | 155 |
| Msa0973110 | AT1G65620.2 | 76.404 | 89 | 21 | 0 | 1 | 89 | 1 | 89 | 4.87e-49 | 155 |
| Msa0973110 | AT2G23660.2 | 60.345 | 116 | 46 | 0 | 6 | 121 | 2 | 117 | 7.80e-49 | 158 |
| Msa0973110 | AT2G23660.3 | 60.345 | 116 | 46 | 0 | 6 | 121 | 2 | 117 | 7.80e-49 | 158 |
| Msa0973110 | AT2G23660.1 | 60.345 | 116 | 46 | 0 | 6 | 121 | 2 | 117 | 7.80e-49 | 158 |
| Msa0973110 | AT5G66870.1 | 66.055 | 109 | 35 | 1 | 1 | 109 | 1 | 107 | 1.69e-48 | 157 |
| Msa0973110 | AT1G31320.1 | 69.318 | 88 | 27 | 0 | 8 | 95 | 12 | 99 | 1.85e-44 | 142 |
| Msa0973110 | AT2G30340.1 | 56.637 | 113 | 49 | 0 | 8 | 120 | 51 | 163 | 2.19e-44 | 145 |
| Msa0973110 | AT2G30340.2 | 56.637 | 113 | 49 | 0 | 8 | 120 | 52 | 164 | 2.37e-44 | 145 |
| Msa0973110 | AT1G16530.1 | 63.208 | 106 | 38 | 1 | 8 | 112 | 13 | 118 | 8.90e-44 | 140 |
| Msa0973110 | AT1G07900.1 | 55.556 | 108 | 48 | 0 | 8 | 115 | 32 | 139 | 2.74e-42 | 138 |
| Msa0973110 | AT2G40470.2 | 57.265 | 117 | 47 | 1 | 8 | 121 | 19 | 135 | 3.18e-42 | 138 |
| Msa0973110 | AT2G40470.1 | 57.265 | 117 | 47 | 1 | 8 | 121 | 44 | 160 | 6.79e-42 | 138 |
| Msa0973110 | AT3G11090.1 | 59.048 | 105 | 43 | 0 | 6 | 110 | 8 | 112 | 7.40e-42 | 136 |
| Msa0973110 | AT2G28500.1 | 53.097 | 113 | 53 | 0 | 8 | 120 | 54 | 166 | 1.88e-41 | 137 |
| Msa0973110 | AT3G26660.1 | 55.000 | 100 | 45 | 0 | 10 | 109 | 6 | 105 | 5.62e-39 | 127 |
| Msa0973110 | AT3G26620.1 | 55.000 | 100 | 45 | 0 | 10 | 109 | 6 | 105 | 7.07e-39 | 127 |
| Msa0973110 | AT3G03760.1 | 54.808 | 104 | 46 | 1 | 8 | 110 | 50 | 153 | 6.98e-36 | 124 |
| Msa0973110 | AT2G42430.1 | 58.163 | 98 | 40 | 1 | 6 | 102 | 12 | 109 | 6.00e-35 | 120 |
| Msa0973110 | AT4G00220.1 | 56.311 | 103 | 44 | 1 | 12 | 113 | 20 | 122 | 1.89e-34 | 119 |
| Msa0973110 | AT4G00210.1 | 54.206 | 107 | 48 | 1 | 7 | 112 | 9 | 115 | 5.03e-34 | 117 |
| Msa0973110 | AT5G06080.1 | 48.182 | 110 | 56 | 1 | 8 | 116 | 6 | 115 | 6.51e-34 | 116 |
| Msa0973110 | AT2G45420.1 | 55.882 | 102 | 44 | 1 | 12 | 112 | 40 | 141 | 2.15e-33 | 117 |
| Msa0973110 | AT2G31310.1 | 51.546 | 97 | 46 | 1 | 7 | 102 | 5 | 101 | 3.18e-32 | 112 |
| Msa0973110 | AT3G58190.1 | 52.083 | 96 | 45 | 1 | 9 | 103 | 11 | 106 | 1.13e-31 | 111 |
| Msa0973110 | AT2G45410.1 | 56.566 | 99 | 42 | 1 | 12 | 109 | 19 | 117 | 1.39e-31 | 110 |
| Msa0973110 | AT2G42440.1 | 49.495 | 99 | 49 | 1 | 6 | 103 | 4 | 102 | 3.58e-31 | 111 |
| Msa0973110 | AT3G50510.1 | 46.602 | 103 | 55 | 0 | 7 | 109 | 10 | 112 | 3.68e-30 | 107 |
| Msa0973110 | AT3G50510.2 | 46.602 | 103 | 55 | 0 | 7 | 109 | 10 | 112 | 3.68e-30 | 107 |
| Msa0973110 | AT5G35900.1 | 42.202 | 109 | 63 | 0 | 10 | 118 | 6 | 114 | 5.34e-26 | 97.1 |
| Msa0973110 | AT3G13850.1 | 43.617 | 94 | 53 | 0 | 10 | 103 | 37 | 130 | 1.02e-25 | 97.8 |
| Msa0973110 | AT3G47870.1 | 39.423 | 104 | 63 | 0 | 6 | 109 | 33 | 136 | 1.30e-24 | 95.9 |
| Msa0973110 | AT1G72980.1 | 42.718 | 103 | 59 | 0 | 3 | 105 | 7 | 109 | 3.13e-23 | 90.1 |
| Msa0973110 | AT1G06280.1 | 45.161 | 93 | 50 | 1 | 10 | 102 | 25 | 116 | 3.65e-21 | 84.3 |
| Msa0973110 | AT2G19820.1 | 39.362 | 94 | 55 | 2 | 8 | 100 | 11 | 103 | 3.78e-17 | 72.0 |
| Msa0973110 | AT4G22700.1 | 38.614 | 101 | 60 | 2 | 10 | 109 | 6 | 105 | 2.24e-16 | 71.6 |
| Msa0973110 | AT5G15060.1 | 36.986 | 73 | 44 | 1 | 10 | 80 | 18 | 90 | 9.48e-13 | 61.2 |
| Msa0973110 | AT3G27940.3 | 35.616 | 73 | 47 | 0 | 8 | 80 | 4 | 76 | 3.03e-11 | 57.4 |
| Msa0973110 | AT3G27940.1 | 35.616 | 73 | 47 | 0 | 8 | 80 | 4 | 76 | 3.03e-11 | 57.4 |
| Msa0973110 | AT3G27940.2 | 35.616 | 73 | 47 | 0 | 8 | 80 | 4 | 76 | 3.03e-11 | 57.4 |
Find 16 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATGTTCACAAAATATT+TGG | 0.192290 | 6_4:+5467369 | Msa0973110:CDS |
| GCAAACTTATGAGGCTCTTC+TGG | 0.277156 | 6_4:-5467348 | None:intergenic |
| GGCTCTTCTGGTGGGAAATA+AGG | 0.304156 | 6_4:-5467336 | None:intergenic |
| TGAACATTTGCAAACTTATG+AGG | 0.383834 | 6_4:-5467357 | None:intergenic |
| ATGATTTAAGCGAATCAAAT+CGG | 0.450299 | 6_4:-5467574 | None:intergenic |
| TTGATTCGCTTAAATCATCA+AGG | 0.486236 | 6_4:+5467579 | Msa0973110:CDS |
| ACAACTCATTAAGCTTCAAA+AGG | 0.501141 | 6_4:+5467533 | Msa0973110:CDS |
| AGGATTAAAGATCCAGTGTA+TGG | 0.525146 | 6_4:+5467480 | Msa0973110:CDS |
| AACTTATGAGGCTCTTCTGG+TGG | 0.540828 | 6_4:-5467345 | None:intergenic |
| ACTGTATCTTCTCTTTGATG+AGG | 0.567592 | 6_4:-5467429 | None:intergenic |
| GATCCAGTGTATGGTTGTGT+TGG | 0.578362 | 6_4:+5467489 | Msa0973110:CDS |
| AGAAACTTGCAAGCAGCACA+TGG | 0.591215 | 6_4:-5467279 | None:intergenic |
| ACTTATGAGGCTCTTCTGGT+GGG | 0.610191 | 6_4:-5467344 | None:intergenic |
| TAGCTTATGAAGCTGAAGCA+AGG | 0.625096 | 6_4:+5467460 | Msa0973110:CDS |
| TGGAGAATTTGAGTAGCTTG+AGG | 0.626001 | 6_4:-5467259 | None:intergenic |
| GCTCCAACACAACCATACAC+TGG | 0.629286 | 6_4:-5467492 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACTTCAATTTATTTAAT+AGG | - | chr6_4:5467846-5467865 | None:intergenic | 10.0% |
| !! | ATTTGATGTAATTATATATA+TGG | + | chr6_4:5468160-5468179 | Msa0973110:intron | 10.0% |
| !! | TTTGATGTAATTATATATAT+GGG | + | chr6_4:5468161-5468180 | Msa0973110:intron | 10.0% |
| !! | TAAACTTCAATTTATTTAAT+AGG | - | chr6_4:5467846-5467865 | None:intergenic | 10.0% |
| !! | ATTTGATGTAATTATATATA+TGG | + | chr6_4:5468160-5468179 | Msa0973110:intron | 10.0% |
| !! | TTTGATGTAATTATATATAT+GGG | + | chr6_4:5468161-5468180 | Msa0973110:intron | 10.0% |
| !!! | TATTTTAAATGTAGTGAATA+TGG | + | chr6_4:5467757-5467776 | Msa0973110:intron | 15.0% |
| !! | AATATTCAATACTTTACAAT+AGG | - | chr6_4:5467884-5467903 | None:intergenic | 15.0% |
| !!! | AATATTTTGTGTAATATACA+AGG | + | chr6_4:5467898-5467917 | Msa0973110:intron | 15.0% |
| !!! | GTTTTTATGCTATAAATAAA+TGG | + | chr6_4:5468066-5468085 | Msa0973110:intron | 15.0% |
| !!! | TATTTTAAATGTAGTGAATA+TGG | + | chr6_4:5467757-5467776 | Msa0973110:intron | 15.0% |
| !! | AATATTCAATACTTTACAAT+AGG | - | chr6_4:5467884-5467903 | None:intergenic | 15.0% |
| !!! | AATATTTTGTGTAATATACA+AGG | + | chr6_4:5467898-5467917 | Msa0973110:intron | 15.0% |
| !!! | GTTTTTATGCTATAAATAAA+TGG | + | chr6_4:5468066-5468085 | Msa0973110:intron | 15.0% |
| !! | AATTGAAGTTTACCAAATTT+AGG | + | chr6_4:5467854-5467873 | Msa0973110:intron | 20.0% |
| !! | ATTGAAGTTTACCAAATTTA+GGG | + | chr6_4:5467855-5467874 | Msa0973110:intron | 20.0% |
| !!! | ACAGATAGTTTTTTTTTTGA+AGG | - | chr6_4:5467945-5467964 | None:intergenic | 20.0% |
| !! | TAGAATTACAAGAACTAAAT+TGG | - | chr6_4:5468207-5468226 | None:intergenic | 20.0% |
| !! | AATTGAAGTTTACCAAATTT+AGG | + | chr6_4:5467854-5467873 | Msa0973110:intron | 20.0% |
| !! | ATTGAAGTTTACCAAATTTA+GGG | + | chr6_4:5467855-5467874 | Msa0973110:intron | 20.0% |
| !!! | ACAGATAGTTTTTTTTTTGA+AGG | - | chr6_4:5467945-5467964 | None:intergenic | 20.0% |
| !! | TAGAATTACAAGAACTAAAT+TGG | - | chr6_4:5468207-5468226 | None:intergenic | 20.0% |
| ! | GCAAATGTTCACAAAATATT+TGG | + | chr6_4:5467369-5467388 | Msa0973110:CDS | 25.0% |
| ! | ATGATTTAAGCGAATCAAAT+CGG | - | chr6_4:5467577-5467596 | None:intergenic | 25.0% |
| !! | TTATATATCACCTTTGTTGT+AGG | - | chr6_4:5467691-5467710 | None:intergenic | 25.0% |
| ! | TTAATAGGAGACTAATATTG+AGG | - | chr6_4:5467831-5467850 | None:intergenic | 25.0% |
| ! | GCAAATGTTCACAAAATATT+TGG | + | chr6_4:5467369-5467388 | Msa0973110:CDS | 25.0% |
| ! | ATGATTTAAGCGAATCAAAT+CGG | - | chr6_4:5467577-5467596 | None:intergenic | 25.0% |
| !! | TTATATATCACCTTTGTTGT+AGG | - | chr6_4:5467691-5467710 | None:intergenic | 25.0% |
| ! | TTAATAGGAGACTAATATTG+AGG | - | chr6_4:5467831-5467850 | None:intergenic | 25.0% |
| TGAACATTTGCAAACTTATG+AGG | - | chr6_4:5467360-5467379 | None:intergenic | 30.0% | |
| ACAACTCATTAAGCTTCAAA+AGG | + | chr6_4:5467533-5467552 | Msa0973110:CDS | 30.0% | |
| ! | TTGATTCGCTTAAATCATCA+AGG | + | chr6_4:5467579-5467598 | Msa0973110:CDS | 30.0% |
| GAATCATTGCTCAAATTAGA+TGG | - | chr6_4:5467657-5467676 | None:intergenic | 30.0% | |
| AATTTGAGCAATGATTCTTG+TGG | + | chr6_4:5467660-5467679 | Msa0973110:intron | 30.0% | |
| ATTTGAGCAATGATTCTTGT+GGG | + | chr6_4:5467661-5467680 | Msa0973110:intron | 30.0% | |
| TAATGTTTCAAAGAGTCTAG+AGG | + | chr6_4:5467721-5467740 | Msa0973110:intron | 30.0% | |
| ! | TTGTTGGAGCTAGTTTAATT+TGG | - | chr6_4:5467800-5467819 | None:intergenic | 30.0% |
| GTAGAAATTAATCACCACAA+TGG | - | chr6_4:5468138-5468157 | None:intergenic | 30.0% | |
| TGAACATTTGCAAACTTATG+AGG | - | chr6_4:5467360-5467379 | None:intergenic | 30.0% | |
| ACAACTCATTAAGCTTCAAA+AGG | + | chr6_4:5467533-5467552 | Msa0973110:CDS | 30.0% | |
| ! | TTGATTCGCTTAAATCATCA+AGG | + | chr6_4:5467579-5467598 | Msa0973110:CDS | 30.0% |
| GAATCATTGCTCAAATTAGA+TGG | - | chr6_4:5467657-5467676 | None:intergenic | 30.0% | |
| AATTTGAGCAATGATTCTTG+TGG | + | chr6_4:5467660-5467679 | Msa0973110:intron | 30.0% | |
| ATTTGAGCAATGATTCTTGT+GGG | + | chr6_4:5467661-5467680 | Msa0973110:intron | 30.0% | |
| TAATGTTTCAAAGAGTCTAG+AGG | + | chr6_4:5467721-5467740 | Msa0973110:intron | 30.0% | |
| ! | TTGTTGGAGCTAGTTTAATT+TGG | - | chr6_4:5467800-5467819 | None:intergenic | 30.0% |
| GTAGAAATTAATCACCACAA+TGG | - | chr6_4:5468138-5468157 | None:intergenic | 30.0% | |
| AAGGTGCAAAAATGCAATCT+TGG | - | chr6_4:5467320-5467339 | None:intergenic | 35.0% | |
| ACTGTATCTTCTCTTTGATG+AGG | - | chr6_4:5467432-5467451 | None:intergenic | 35.0% | |
| AGGATTAAAGATCCAGTGTA+TGG | + | chr6_4:5467480-5467499 | Msa0973110:CDS | 35.0% | |
| TTTGAGCAATGATTCTTGTG+GGG | + | chr6_4:5467662-5467681 | Msa0973110:intron | 35.0% | |
| TATTGAGGCATATGTCTTGT+TGG | - | chr6_4:5467816-5467835 | None:intergenic | 35.0% | |
| ACAATAGGAAGCCCTAAATT+TGG | - | chr6_4:5467869-5467888 | None:intergenic | 35.0% | |
| AAGGTGCAAAAATGCAATCT+TGG | - | chr6_4:5467320-5467339 | None:intergenic | 35.0% | |
| ACTGTATCTTCTCTTTGATG+AGG | - | chr6_4:5467432-5467451 | None:intergenic | 35.0% | |
| AGGATTAAAGATCCAGTGTA+TGG | + | chr6_4:5467480-5467499 | Msa0973110:CDS | 35.0% | |
| TTTGAGCAATGATTCTTGTG+GGG | + | chr6_4:5467662-5467681 | Msa0973110:intron | 35.0% | |
| TATTGAGGCATATGTCTTGT+TGG | - | chr6_4:5467816-5467835 | None:intergenic | 35.0% | |
| ACAATAGGAAGCCCTAAATT+TGG | - | chr6_4:5467869-5467888 | None:intergenic | 35.0% | |
| TGGAGAATTTGAGTAGCTTG+AGG | - | chr6_4:5467262-5467281 | None:intergenic | 40.0% | |
| TAGCTTATGAAGCTGAAGCA+AGG | + | chr6_4:5467460-5467479 | Msa0973110:CDS | 40.0% | |
| CATCAAGGTTCTTCTTCTCT+TGG | + | chr6_4:5467594-5467613 | Msa0973110:intron | 40.0% | |
| TTAATCACCACAATGGTGCT+TGG | - | chr6_4:5468131-5468150 | None:intergenic | 40.0% | |
| TGGAGAATTTGAGTAGCTTG+AGG | - | chr6_4:5467262-5467281 | None:intergenic | 40.0% | |
| TAGCTTATGAAGCTGAAGCA+AGG | + | chr6_4:5467460-5467479 | Msa0973110:CDS | 40.0% | |
| CATCAAGGTTCTTCTTCTCT+TGG | + | chr6_4:5467594-5467613 | Msa0973110:intron | 40.0% | |
| TTAATCACCACAATGGTGCT+TGG | - | chr6_4:5468131-5468150 | None:intergenic | 40.0% | |
| AGAAACTTGCAAGCAGCACA+TGG | - | chr6_4:5467282-5467301 | None:intergenic | 45.0% | |
| ACTTATGAGGCTCTTCTGGT+GGG | - | chr6_4:5467347-5467366 | None:intergenic | 45.0% | |
| AACTTATGAGGCTCTTCTGG+TGG | - | chr6_4:5467348-5467367 | None:intergenic | 45.0% | |
| GCAAACTTATGAGGCTCTTC+TGG | - | chr6_4:5467351-5467370 | None:intergenic | 45.0% | |
| GATCCAGTGTATGGTTGTGT+TGG | + | chr6_4:5467489-5467508 | Msa0973110:CDS | 45.0% | |
| GGTTCTTCTTCTCTTGGTCT+TGG | + | chr6_4:5467600-5467619 | Msa0973110:intron | 45.0% | |
| TGTGGGGATTCCTACAACAA+AGG | + | chr6_4:5467678-5467697 | Msa0973110:intron | 45.0% | |
| GTAGTGAATATGGACGTTGC+AGG | + | chr6_4:5467767-5467786 | Msa0973110:intron | 45.0% | |
| TATAGCTCCAAGCACCATTG+TGG | + | chr6_4:5468121-5468140 | Msa0973110:intron | 45.0% | |
| AGAAACTTGCAAGCAGCACA+TGG | - | chr6_4:5467282-5467301 | None:intergenic | 45.0% | |
| ACTTATGAGGCTCTTCTGGT+GGG | - | chr6_4:5467347-5467366 | None:intergenic | 45.0% | |
| AACTTATGAGGCTCTTCTGG+TGG | - | chr6_4:5467348-5467367 | None:intergenic | 45.0% | |
| GCAAACTTATGAGGCTCTTC+TGG | - | chr6_4:5467351-5467370 | None:intergenic | 45.0% | |
| GATCCAGTGTATGGTTGTGT+TGG | + | chr6_4:5467489-5467508 | Msa0973110:CDS | 45.0% | |
| GGTTCTTCTTCTCTTGGTCT+TGG | + | chr6_4:5467600-5467619 | Msa0973110:intron | 45.0% | |
| TGTGGGGATTCCTACAACAA+AGG | + | chr6_4:5467678-5467697 | Msa0973110:intron | 45.0% | |
| GTAGTGAATATGGACGTTGC+AGG | + | chr6_4:5467767-5467786 | Msa0973110:intron | 45.0% | |
| TATAGCTCCAAGCACCATTG+TGG | + | chr6_4:5468121-5468140 | Msa0973110:intron | 45.0% | |
| GGCTCTTCTGGTGGGAAATA+AGG | - | chr6_4:5467339-5467358 | None:intergenic | 50.0% | |
| GCTCCAACACAACCATACAC+TGG | - | chr6_4:5467495-5467514 | None:intergenic | 50.0% | |
| GGCTCTTCTGGTGGGAAATA+AGG | - | chr6_4:5467339-5467358 | None:intergenic | 50.0% | |
| GCTCCAACACAACCATACAC+TGG | - | chr6_4:5467495-5467514 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 5467255 | 5468262 | 5467255 | ID=Msa0973110;Name=Msa0973110 |
| chr6_4 | mRNA | 5467255 | 5468262 | 5467255 | ID=Msa0973110-mRNA-1;Parent=Msa0973110;Name=Msa0973110-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|0.5|1|1|2|0|121 |
| chr6_4 | exon | 5467255 | 5467600 | 5467255 | ID=Msa0973110-mRNA-1:exon:2314;Parent=Msa0973110-mRNA-1 |
| chr6_4 | exon | 5468243 | 5468262 | 5468243 | ID=Msa0973110-mRNA-1:exon:2315;Parent=Msa0973110-mRNA-1 |
| chr6_4 | CDS | 5467255 | 5467600 | 5467255 | ID=Msa0973110-mRNA-1:cds;Parent=Msa0973110-mRNA-1 |
| chr6_4 | CDS | 5468243 | 5468262 | 5468243 | ID=Msa0973110-mRNA-1:cds;Parent=Msa0973110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
