Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973820 | KEH24950.1 | 59.657 | 233 | 77 | 4 | 1 | 223 | 4 | 229 | 8.91e-83 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973820 | sp|Q9STS6|LBD27_ARATH | 48.598 | 107 | 54 | 1 | 3 | 109 | 33 | 138 | 3.72e-27 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973820 | A0A072UGP3 | 59.657 | 233 | 77 | 4 | 1 | 223 | 4 | 229 | 4.26e-83 | 261 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0973820 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973820 | MtrunA17_Chr6g0452661 | 59.657 | 233 | 77 | 4 | 1 | 223 | 4 | 229 | 8.20e-87 | 261 |
| Msa0973820 | MtrunA17_Chr6g0452691 | 64.925 | 134 | 47 | 0 | 1 | 134 | 4 | 137 | 1.04e-56 | 181 |
| Msa0973820 | MtrunA17_Chr5g0439111 | 63.636 | 176 | 43 | 4 | 1 | 157 | 4 | 177 | 1.68e-55 | 180 |
| Msa0973820 | MtrunA17_Chr6g0452671 | 58.088 | 136 | 56 | 1 | 3 | 138 | 8 | 142 | 2.23e-51 | 168 |
| Msa0973820 | MtrunA17_Chr4g0055441 | 58.594 | 128 | 46 | 2 | 7 | 134 | 3 | 123 | 9.40e-45 | 150 |
| Msa0973820 | MtrunA17_Chr4g0059901 | 53.153 | 111 | 47 | 4 | 3 | 111 | 7 | 114 | 2.00e-31 | 118 |
| Msa0973820 | MtrunA17_Chr8g0342351 | 50.467 | 107 | 52 | 1 | 3 | 109 | 9 | 114 | 9.34e-29 | 111 |
| Msa0973820 | MtrunA17_Chr2g0330201 | 50.450 | 111 | 50 | 2 | 3 | 111 | 16 | 123 | 1.90e-27 | 108 |
| Msa0973820 | MtrunA17_Chr5g0402611 | 37.255 | 153 | 88 | 2 | 3 | 148 | 5 | 156 | 4.04e-26 | 105 |
| Msa0973820 | MtrunA17_Chr6g0449641 | 43.137 | 102 | 57 | 1 | 3 | 104 | 6 | 106 | 1.45e-25 | 99.8 |
| Msa0973820 | MtrunA17_Chr6g0449651 | 43.137 | 102 | 57 | 1 | 3 | 104 | 64 | 164 | 2.23e-25 | 100 |
| Msa0973820 | MtrunA17_Chr3g0115431 | 45.098 | 102 | 55 | 1 | 7 | 108 | 10 | 110 | 4.13e-25 | 100 |
| Msa0973820 | MtrunA17_Chr7g0227511 | 40.952 | 105 | 61 | 1 | 3 | 107 | 8 | 111 | 5.58e-25 | 99.0 |
| Msa0973820 | MtrunA17_Chr2g0311601 | 46.429 | 84 | 44 | 1 | 3 | 86 | 10 | 92 | 8.23e-24 | 95.5 |
| Msa0973820 | MtrunA17_Chr8g0353981 | 47.619 | 84 | 43 | 1 | 3 | 86 | 4 | 86 | 1.72e-23 | 96.3 |
| Msa0973820 | MtrunA17_Chr3g0097221 | 41.379 | 116 | 67 | 1 | 3 | 118 | 4 | 118 | 4.83e-23 | 96.7 |
| Msa0973820 | MtrunA17_Chr3g0106101 | 32.903 | 155 | 96 | 4 | 4 | 157 | 5 | 152 | 1.15e-22 | 92.8 |
| Msa0973820 | MtrunA17_Chr4g0043421 | 30.968 | 155 | 92 | 3 | 7 | 147 | 16 | 169 | 1.49e-22 | 92.4 |
| Msa0973820 | MtrunA17_Chr3g0114061 | 33.775 | 151 | 92 | 4 | 3 | 147 | 5 | 153 | 2.70e-22 | 91.3 |
| Msa0973820 | MtrunA17_Chr3g0117121 | 40.594 | 101 | 59 | 1 | 4 | 104 | 8 | 107 | 4.24e-22 | 91.7 |
| Msa0973820 | MtrunA17_Chr4g0058651 | 39.604 | 101 | 60 | 1 | 4 | 104 | 9 | 108 | 5.66e-22 | 91.3 |
| Msa0973820 | MtrunA17_Chr5g0437571 | 40.000 | 95 | 56 | 1 | 1 | 95 | 1 | 94 | 1.28e-21 | 89.7 |
| Msa0973820 | MtrunA17_Chr6g0449311 | 48.864 | 88 | 42 | 1 | 34 | 121 | 1 | 85 | 8.79e-21 | 87.0 |
| Msa0973820 | MtrunA17_Chr3g0129071 | 39.216 | 102 | 61 | 1 | 1 | 102 | 42 | 142 | 1.01e-20 | 89.0 |
| Msa0973820 | MtrunA17_Chr1g0200201 | 41.739 | 115 | 62 | 2 | 7 | 121 | 73 | 182 | 1.04e-20 | 89.0 |
| Msa0973820 | MtrunA17_Chr5g0438091 | 37.624 | 101 | 62 | 1 | 1 | 101 | 34 | 133 | 1.78e-20 | 87.4 |
| Msa0973820 | MtrunA17_Chr5g0437401 | 32.192 | 146 | 86 | 3 | 2 | 135 | 7 | 151 | 2.34e-20 | 86.7 |
| Msa0973820 | MtrunA17_Chr7g0225111 | 36.111 | 108 | 68 | 1 | 7 | 114 | 6 | 112 | 4.19e-20 | 84.3 |
| Msa0973820 | MtrunA17_Chr5g0432451 | 38.614 | 101 | 61 | 1 | 1 | 101 | 38 | 137 | 5.97e-20 | 87.0 |
| Msa0973820 | MtrunA17_Chr5g0444351 | 35.556 | 135 | 78 | 5 | 7 | 134 | 6 | 138 | 1.30e-19 | 83.6 |
| Msa0973820 | MtrunA17_Chr4g0040831 | 44.828 | 87 | 46 | 2 | 4 | 89 | 13 | 98 | 1.83e-19 | 84.7 |
| Msa0973820 | MtrunA17_Chr4g0058441 | 56.522 | 69 | 30 | 0 | 213 | 281 | 120 | 188 | 1.99e-19 | 88.6 |
| Msa0973820 | MtrunA17_Chr4g0075191 | 52.055 | 73 | 35 | 0 | 210 | 282 | 403 | 475 | 3.37e-19 | 88.2 |
| Msa0973820 | MtrunA17_Chr4g0030001 | 44.211 | 95 | 51 | 2 | 7 | 100 | 25 | 118 | 7.85e-19 | 82.8 |
| Msa0973820 | MtrunA17_Chr8g0341191 | 53.425 | 73 | 34 | 0 | 209 | 281 | 431 | 503 | 9.01e-19 | 87.0 |
| Msa0973820 | MtrunA17_Chr3g0113891 | 35.294 | 102 | 65 | 1 | 2 | 103 | 10 | 110 | 9.94e-19 | 82.4 |
| Msa0973820 | MtrunA17_Chr8g0381211 | 50.685 | 73 | 36 | 0 | 210 | 282 | 43 | 115 | 6.22e-18 | 84.0 |
| Msa0973820 | MtrunA17_Chr8g0392081 | 46.512 | 86 | 46 | 0 | 210 | 295 | 164 | 249 | 6.70e-18 | 83.6 |
| Msa0973820 | MtrunA17_Chr8g0374591 | 36.538 | 104 | 65 | 1 | 5 | 108 | 7 | 109 | 7.29e-18 | 78.6 |
| Msa0973820 | MtrunA17_Chr8g0374601 | 37.500 | 104 | 64 | 1 | 5 | 108 | 25 | 127 | 5.48e-16 | 76.6 |
| Msa0973820 | MtrunA17_Chr8g0351721 | 37.383 | 107 | 65 | 2 | 7 | 112 | 19 | 124 | 1.36e-15 | 74.3 |
| Msa0973820 | MtrunA17_Chr7g0260971 | 40.000 | 85 | 49 | 2 | 3 | 86 | 11 | 94 | 9.54e-15 | 72.0 |
| Msa0973820 | MtrunA17_Chr6g0460951 | 35.780 | 109 | 63 | 3 | 7 | 109 | 41 | 148 | 1.14e-14 | 72.0 |
| Msa0973820 | MtrunA17_Chr8g0374581 | 36.449 | 107 | 65 | 3 | 5 | 109 | 7 | 112 | 2.50e-14 | 71.2 |
| Msa0973820 | MtrunA17_Chr6g0460941 | 38.272 | 81 | 48 | 2 | 7 | 86 | 8 | 87 | 3.19e-14 | 67.4 |
| Msa0973820 | MtrunA17_Chr2g0326041 | 56.250 | 48 | 21 | 0 | 7 | 54 | 34 | 81 | 4.65e-14 | 67.0 |
| Msa0973820 | MtrunA17_Chr7g0245871 | 36.458 | 96 | 59 | 2 | 7 | 101 | 28 | 122 | 7.00e-14 | 70.1 |
| Msa0973820 | MtrunA17_Chr5g0435641 | 29.524 | 105 | 72 | 2 | 5 | 108 | 6 | 109 | 1.30e-13 | 68.6 |
| Msa0973820 | MtrunA17_Chr1g0184281 | 36.842 | 95 | 58 | 2 | 7 | 100 | 16 | 109 | 1.68e-13 | 68.6 |
| Msa0973820 | MtrunA17_Chr8g0351701 | 34.951 | 103 | 65 | 2 | 7 | 108 | 24 | 125 | 1.90e-13 | 68.6 |
| Msa0973820 | MtrunA17_Chr4g0046201 | 32.558 | 86 | 57 | 1 | 1 | 86 | 1 | 85 | 8.46e-13 | 67.4 |
| Msa0973820 | MtrunA17_Chr1g0184271 | 38.272 | 81 | 48 | 2 | 7 | 86 | 13 | 92 | 1.29e-12 | 66.2 |
| Msa0973820 | MtrunA17_Chr7g0261031 | 33.333 | 99 | 64 | 2 | 3 | 100 | 5 | 102 | 3.19e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973820 | AT3G47870.1 | 48.598 | 107 | 54 | 1 | 3 | 109 | 33 | 138 | 3.78e-28 | 111 |
| Msa0973820 | AT3G13850.1 | 45.378 | 119 | 63 | 2 | 5 | 122 | 35 | 152 | 7.15e-27 | 107 |
| Msa0973820 | AT3G27650.1 | 45.098 | 102 | 55 | 1 | 3 | 104 | 36 | 136 | 1.26e-25 | 100 |
| Msa0973820 | AT1G72980.1 | 42.105 | 133 | 69 | 3 | 3 | 132 | 10 | 137 | 2.13e-24 | 99.0 |
| Msa0973820 | AT1G65620.1 | 48.810 | 84 | 42 | 1 | 3 | 86 | 6 | 88 | 3.10e-24 | 98.2 |
| Msa0973820 | AT1G65620.4 | 48.810 | 84 | 42 | 1 | 3 | 86 | 6 | 88 | 3.10e-24 | 98.2 |
| Msa0973820 | AT1G65620.3 | 48.810 | 84 | 42 | 1 | 3 | 86 | 6 | 88 | 3.10e-24 | 98.2 |
| Msa0973820 | AT1G65620.5 | 48.810 | 84 | 42 | 1 | 3 | 86 | 6 | 88 | 3.10e-24 | 98.2 |
| Msa0973820 | AT1G65620.2 | 48.810 | 84 | 42 | 1 | 3 | 86 | 6 | 88 | 3.10e-24 | 98.2 |
| Msa0973820 | AT5G66870.1 | 40.566 | 106 | 62 | 1 | 3 | 108 | 4 | 108 | 4.52e-23 | 97.4 |
| Msa0973820 | AT5G63090.4 | 40.000 | 105 | 62 | 1 | 4 | 108 | 9 | 112 | 6.25e-22 | 91.7 |
| Msa0973820 | AT5G63090.3 | 40.000 | 105 | 62 | 1 | 4 | 108 | 9 | 112 | 6.25e-22 | 91.7 |
| Msa0973820 | AT5G63090.2 | 40.000 | 105 | 62 | 1 | 4 | 108 | 9 | 112 | 6.25e-22 | 91.7 |
| Msa0973820 | AT5G63090.1 | 40.000 | 105 | 62 | 1 | 4 | 108 | 9 | 112 | 6.25e-22 | 91.7 |
| Msa0973820 | AT3G26660.1 | 37.069 | 116 | 71 | 2 | 5 | 120 | 4 | 117 | 7.81e-22 | 89.4 |
| Msa0973820 | AT3G26620.1 | 37.500 | 104 | 64 | 1 | 5 | 108 | 4 | 106 | 2.05e-21 | 88.2 |
| Msa0973820 | AT1G31320.1 | 46.250 | 80 | 42 | 1 | 7 | 86 | 14 | 92 | 2.39e-21 | 89.7 |
| Msa0973820 | AT2G30130.1 | 32.787 | 122 | 81 | 1 | 4 | 125 | 6 | 126 | 3.25e-20 | 87.0 |
| Msa0973820 | AT3G11090.1 | 35.965 | 114 | 71 | 2 | 2 | 114 | 7 | 119 | 2.11e-19 | 84.0 |
| Msa0973820 | AT1G07900.1 | 43.617 | 94 | 52 | 1 | 7 | 100 | 34 | 126 | 2.24e-19 | 84.7 |
| Msa0973820 | AT1G16530.1 | 33.540 | 161 | 89 | 8 | 2 | 152 | 10 | 162 | 2.53e-19 | 84.0 |
| Msa0973820 | AT2G28500.1 | 42.857 | 98 | 55 | 1 | 7 | 104 | 56 | 152 | 3.55e-19 | 85.1 |
| Msa0973820 | AT2G23660.2 | 41.758 | 91 | 52 | 1 | 3 | 93 | 2 | 91 | 3.66e-19 | 86.7 |
| Msa0973820 | AT2G23660.3 | 41.758 | 91 | 52 | 1 | 3 | 93 | 2 | 91 | 3.66e-19 | 86.7 |
| Msa0973820 | AT2G23660.1 | 41.758 | 91 | 52 | 1 | 3 | 93 | 2 | 91 | 3.66e-19 | 86.7 |
| Msa0973820 | AT2G40470.2 | 40.698 | 86 | 50 | 1 | 1 | 86 | 15 | 99 | 9.30e-19 | 83.2 |
| Msa0973820 | AT5G15060.1 | 49.315 | 73 | 36 | 1 | 7 | 78 | 18 | 90 | 1.18e-18 | 81.3 |
| Msa0973820 | AT2G40470.1 | 40.698 | 86 | 50 | 1 | 1 | 86 | 40 | 124 | 2.50e-18 | 82.8 |
| Msa0973820 | AT2G30340.2 | 36.000 | 100 | 63 | 1 | 1 | 100 | 48 | 146 | 6.95e-18 | 82.4 |
| Msa0973820 | AT2G30340.1 | 36.000 | 100 | 63 | 1 | 1 | 100 | 47 | 145 | 8.27e-18 | 82.0 |
| Msa0973820 | AT3G50510.1 | 40.000 | 85 | 50 | 1 | 2 | 86 | 8 | 91 | 1.04e-17 | 80.5 |
| Msa0973820 | AT3G50510.2 | 40.000 | 85 | 50 | 1 | 2 | 86 | 8 | 91 | 1.04e-17 | 80.5 |
| Msa0973820 | AT1G06280.1 | 39.175 | 97 | 51 | 2 | 4 | 93 | 22 | 117 | 3.61e-17 | 79.0 |
| Msa0973820 | AT3G03760.1 | 35.294 | 102 | 64 | 2 | 7 | 107 | 52 | 152 | 2.21e-14 | 72.4 |
| Msa0973820 | AT4G00220.1 | 34.653 | 101 | 64 | 2 | 9 | 108 | 20 | 119 | 4.32e-14 | 70.9 |
| Msa0973820 | AT2G19820.1 | 37.037 | 81 | 51 | 0 | 7 | 87 | 13 | 93 | 2.04e-13 | 66.6 |
| Msa0973820 | AT2G42430.1 | 37.647 | 85 | 51 | 2 | 3 | 86 | 12 | 95 | 6.77e-13 | 67.8 |
| Msa0973820 | AT2G42440.1 | 35.294 | 85 | 53 | 2 | 3 | 86 | 4 | 87 | 8.11e-13 | 67.4 |
| Msa0973820 | AT3G58190.1 | 33.010 | 103 | 67 | 2 | 7 | 108 | 12 | 113 | 9.54e-13 | 67.0 |
| Msa0973820 | AT5G06080.1 | 37.349 | 83 | 50 | 2 | 5 | 86 | 6 | 87 | 1.56e-12 | 65.5 |
| Msa0973820 | AT2G45420.1 | 33.663 | 101 | 65 | 2 | 9 | 108 | 40 | 139 | 5.49e-12 | 65.5 |
| Msa0973820 | AT4G00210.1 | 31.061 | 132 | 82 | 3 | 7 | 130 | 12 | 142 | 7.65e-12 | 64.3 |
| Msa0973820 | AT5G35900.1 | 29.008 | 131 | 87 | 3 | 7 | 136 | 6 | 131 | 2.28e-11 | 62.8 |
| Msa0973820 | AT2G31310.1 | 35.802 | 81 | 50 | 2 | 7 | 86 | 8 | 87 | 4.89e-11 | 61.2 |
Find 59 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGCAAAATTTCCGGTAAA+TGG | 0.166540 | 6_4:+6536412 | Msa0973820:CDS |
| GGTGGTGTTGATGGCGTATA+TGG | 0.171314 | 6_4:+6537735 | Msa0973820:CDS |
| TCTCAATTTCCAAACAATTA+TGG | 0.226928 | 6_4:+6536580 | Msa0973820:CDS |
| GGTCTATCTGCTGGAAAATA+AGG | 0.253721 | 6_4:-6536265 | None:intergenic |
| GAATATTCGTGCAAAATTTC+CGG | 0.269871 | 6_4:+6536405 | Msa0973820:CDS |
| TGGCGATAAATTTGATAGTT+TGG | 0.276950 | 6_4:+6536756 | Msa0973820:CDS |
| TATTACAAGTTTGGTCGATT+AGG | 0.287078 | 6_4:+6537764 | Msa0973820:CDS |
| GGCCTATATATGCTTCAATT+TGG | 0.287385 | 6_4:+6537799 | Msa0973820:CDS |
| GTATTCAAAGAGAATTTCTT+TGG | 0.329098 | 6_4:+6537548 | Msa0973820:intron |
| TCGATTAGGGAAGTGTTTCT+TGG | 0.330606 | 6_4:+6537778 | Msa0973820:CDS |
| TGGGGAATATATTACAAGTT+TGG | 0.350549 | 6_4:+6537755 | Msa0973820:CDS |
| CTGAGTTAAATCTAACAAAT+AGG | 0.352486 | 6_4:+6536485 | Msa0973820:CDS |
| CTAACCCTAGTTGTATTCAT+AGG | 0.358430 | 6_4:-6536697 | None:intergenic |
| ATTACAAGTTTGGTCGATTA+GGG | 0.361593 | 6_4:+6537765 | Msa0973820:CDS |
| GGAAATTGAGAACTAGTATA+AGG | 0.362402 | 6_4:-6536568 | None:intergenic |
| ATATTATCACCATAATTGTT+TGG | 0.367383 | 6_4:-6536589 | None:intergenic |
| CCGAAAAGCAATGGGAGATT+AGG | 0.383261 | 6_4:+6537628 | Msa0973820:CDS |
| TCCAAACGGAGTCCTCGTTT+TGG | 0.393833 | 6_4:+6537710 | Msa0973820:CDS |
| GGCGACGCTCATCGTTTGTT+TGG | 0.402710 | 6_4:+6536298 | Msa0973820:CDS |
| CACCAAATTGAAGCATATAT+AGG | 0.407169 | 6_4:-6537801 | None:intergenic |
| GTATTCATAGGATTTATATT+CGG | 0.419731 | 6_4:-6536685 | None:intergenic |
| TCCAAAACGAGGACTCCGTT+TGG | 0.426699 | 6_4:-6537711 | None:intergenic |
| ACATCAAGACATCCATTTAC+CGG | 0.430487 | 6_4:-6536424 | None:intergenic |
| ATTGAGAACTAGTATAAGGT+AGG | 0.439104 | 6_4:-6536564 | None:intergenic |
| TTTCTTTGGAGAGGGGTAAG+AGG | 0.442388 | 6_4:+6537562 | Msa0973820:CDS |
| AGGCAGTGCAAAAGTTTGTT+GGG | 0.452396 | 6_4:+6537582 | Msa0973820:CDS |
| GTGGTGTTGATGGCGTATAT+GGG | 0.456208 | 6_4:+6537736 | Msa0973820:CDS |
| GAGGCAGTGCAAAAGTTTGT+TGG | 0.457695 | 6_4:+6537581 | Msa0973820:CDS |
| GATGTCATAAAAGAATTTGA+TGG | 0.461807 | 6_4:+6536736 | Msa0973820:CDS |
| TCTGTCTCCACTTTGTCAAA+AGG | 0.470540 | 6_4:-6537681 | None:intergenic |
| GATGTTATTAAGCTATATGA+AGG | 0.481386 | 6_4:+6536442 | Msa0973820:CDS |
| AAAGAGAATTTCTTTGGAGA+GGG | 0.490109 | 6_4:+6537554 | Msa0973820:intron |
| ATCAAAGAAGGAAGTGTACA+AGG | 0.491716 | 6_4:+6536227 | Msa0973820:CDS |
| TATGCTTCAATTTGGTGGAA+AGG | 0.494408 | 6_4:+6537807 | Msa0973820:CDS |
| AGGAGTGAAAGATGTTAGAA+TGG | 0.497014 | 6_4:+6537648 | Msa0973820:CDS |
| CAAAAGTTTGTTGGGAGATG+TGG | 0.505098 | 6_4:+6537590 | Msa0973820:CDS |
| TTTCAACATAGATGACCTCA+TGG | 0.512239 | 6_4:+6536792 | Msa0973820:CDS |
| CTATATATGCTTCAATTTGG+TGG | 0.513997 | 6_4:+6537802 | Msa0973820:CDS |
| AAAGATACTAAACGAAATCA+AGG | 0.515917 | 6_4:+6536336 | Msa0973820:CDS |
| TTTGTCAACCGAAAAGCAAT+GGG | 0.520392 | 6_4:+6537620 | Msa0973820:CDS |
| AGAGTATTATTAACATCATG+AGG | 0.523658 | 6_4:-6536649 | None:intergenic |
| CAAAGAGAATTTCTTTGGAG+AGG | 0.544868 | 6_4:+6537553 | Msa0973820:intron |
| TAAATCCTATGAATACAACT+AGG | 0.545521 | 6_4:+6536692 | Msa0973820:CDS |
| ATTTGTCAACCGAAAAGCAA+TGG | 0.555004 | 6_4:+6537619 | Msa0973820:CDS |
| TTGAGAACTAGTATAAGGTA+GGG | 0.566957 | 6_4:-6536563 | None:intergenic |
| AGAACTAGTATAAGGTAGGG+AGG | 0.579675 | 6_4:-6536560 | None:intergenic |
| TGGATGATGTTGACTTCAGA+AGG | 0.581921 | 6_4:+6536812 | Msa0973820:CDS |
| AAATCCTATGAATACAACTA+GGG | 0.586418 | 6_4:+6536693 | Msa0973820:CDS |
| AAGAGAATTTCTTTGGAGAG+GGG | 0.586631 | 6_4:+6537555 | Msa0973820:intron |
| CAGCATGCAAGTATCAAAGA+AGG | 0.595919 | 6_4:+6536215 | Msa0973820:CDS |
| TGGTGTTGATGGCGTATATG+GGG | 0.597565 | 6_4:+6537737 | Msa0973820:CDS |
| GAGACAGAAGTTGATCCAAA+CGG | 0.620828 | 6_4:+6537696 | Msa0973820:CDS |
| TCAAAGAAGGAAGTGTACAA+GGG | 0.643253 | 6_4:+6536228 | Msa0973820:CDS |
| GAGTATTATTAACATCATGA+GGG | 0.644601 | 6_4:-6536648 | None:intergenic |
| ACAACTAGGGTTAGCAACAG+TGG | 0.645530 | 6_4:+6536706 | Msa0973820:CDS |
| GACGATCATGAAAACAAACA+AGG | 0.674347 | 6_4:+6536186 | None:intergenic |
| CAACACCACCTTCCAAAACG+AGG | 0.674668 | 6_4:-6537722 | None:intergenic |
| CTAAACGAAATCAAGGACAA+AGG | 0.675964 | 6_4:+6536343 | Msa0973820:CDS |
| TGAAGTCAACATCATCCATG+AGG | 0.701852 | 6_4:-6536807 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTATTTTGTTTAACTT+TGG | + | chr6_4:6536855-6536874 | Msa0973820:intron | 10.0% |
| !!! | ATATTTATTTTGTTTAACTT+TGG | + | chr6_4:6536855-6536874 | Msa0973820:intron | 10.0% |
| !! | CATACATATACTTAATTATA+AGG | - | chr6_4:6536942-6536961 | None:intergenic | 15.0% |
| !! | CTTATAATTAAGTATATGTA+TGG | + | chr6_4:6536940-6536959 | Msa0973820:intron | 15.0% |
| !!! | CTTTTCAAAAAGATTTTTTT+AGG | + | chr6_4:6537223-6537242 | Msa0973820:intron | 15.0% |
| !!! | ATCCCAATATATTTTATATA+TGG | + | chr6_4:6537276-6537295 | Msa0973820:intron | 15.0% |
| !! | CACCATATATAAAATATATT+GGG | - | chr6_4:6537281-6537300 | None:intergenic | 15.0% |
| !! | TCACCATATATAAAATATAT+TGG | - | chr6_4:6537282-6537301 | None:intergenic | 15.0% |
| !!! | ATATATTTTATATATGGTGA+TGG | + | chr6_4:6537282-6537301 | Msa0973820:intron | 15.0% |
| !! | TCAATTCTGTTTAAATATTT+AGG | + | chr6_4:6537334-6537353 | Msa0973820:intron | 15.0% |
| !! | CATACATATACTTAATTATA+AGG | - | chr6_4:6536942-6536961 | None:intergenic | 15.0% |
| !! | CTTATAATTAAGTATATGTA+TGG | + | chr6_4:6536940-6536959 | Msa0973820:intron | 15.0% |
| !!! | CTTTTCAAAAAGATTTTTTT+AGG | + | chr6_4:6537223-6537242 | Msa0973820:intron | 15.0% |
| !!! | ATCCCAATATATTTTATATA+TGG | + | chr6_4:6537276-6537295 | Msa0973820:intron | 15.0% |
| !! | CACCATATATAAAATATATT+GGG | - | chr6_4:6537281-6537300 | None:intergenic | 15.0% |
| !! | TCACCATATATAAAATATAT+TGG | - | chr6_4:6537282-6537301 | None:intergenic | 15.0% |
| !!! | ATATATTTTATATATGGTGA+TGG | + | chr6_4:6537282-6537301 | Msa0973820:intron | 15.0% |
| !! | TCAATTCTGTTTAAATATTT+AGG | + | chr6_4:6537334-6537353 | Msa0973820:intron | 15.0% |
| !! | ATATTATCACCATAATTGTT+TGG | - | chr6_4:6536592-6536611 | None:intergenic | 20.0% |
| !! | GTATTCATAGGATTTATATT+CGG | - | chr6_4:6536688-6536707 | None:intergenic | 20.0% |
| !! | ACCATTTATATGACAATTTA+TGG | + | chr6_4:6537029-6537048 | Msa0973820:intron | 20.0% |
| !! | CCATTTATATGACAATTTAT+GGG | + | chr6_4:6537030-6537049 | Msa0973820:intron | 20.0% |
| !!! | GTTTAAATATTTAGGTTTAC+TGG | + | chr6_4:6537342-6537361 | Msa0973820:intron | 20.0% |
| !! | GAATTTAATCTCCTATTAAA+GGG | - | chr6_4:6537403-6537422 | None:intergenic | 20.0% |
| !! | AGAATTTAATCTCCTATTAA+AGG | - | chr6_4:6537404-6537423 | None:intergenic | 20.0% |
| !! | TTAATAGGAGATTAAATTCT+TGG | + | chr6_4:6537404-6537423 | Msa0973820:intron | 20.0% |
| !! | TAATAGGAGATTAAATTCTT+GGG | + | chr6_4:6537405-6537424 | Msa0973820:intron | 20.0% |
| !!! | GAGAAAAAGTATATTAGTTT+TGG | + | chr6_4:6537427-6537446 | Msa0973820:intron | 20.0% |
| !!! | AAAAAGTATATTAGTTTTGG+TGG | + | chr6_4:6537430-6537449 | Msa0973820:intron | 20.0% |
| !!! | AAAAGTATATTAGTTTTGGT+GGG | + | chr6_4:6537431-6537450 | Msa0973820:intron | 20.0% |
| !! | ATATTATCACCATAATTGTT+TGG | - | chr6_4:6536592-6536611 | None:intergenic | 20.0% |
| !! | GTATTCATAGGATTTATATT+CGG | - | chr6_4:6536688-6536707 | None:intergenic | 20.0% |
| !! | ACCATTTATATGACAATTTA+TGG | + | chr6_4:6537029-6537048 | Msa0973820:intron | 20.0% |
| !! | CCATTTATATGACAATTTAT+GGG | + | chr6_4:6537030-6537049 | Msa0973820:intron | 20.0% |
| !!! | GTTTAAATATTTAGGTTTAC+TGG | + | chr6_4:6537342-6537361 | Msa0973820:intron | 20.0% |
| !! | GAATTTAATCTCCTATTAAA+GGG | - | chr6_4:6537403-6537422 | None:intergenic | 20.0% |
| !! | AGAATTTAATCTCCTATTAA+AGG | - | chr6_4:6537404-6537423 | None:intergenic | 20.0% |
| !! | TTAATAGGAGATTAAATTCT+TGG | + | chr6_4:6537404-6537423 | Msa0973820:intron | 20.0% |
| !! | TAATAGGAGATTAAATTCTT+GGG | + | chr6_4:6537405-6537424 | Msa0973820:intron | 20.0% |
| !!! | GAGAAAAAGTATATTAGTTT+TGG | + | chr6_4:6537427-6537446 | Msa0973820:intron | 20.0% |
| !!! | AAAAAGTATATTAGTTTTGG+TGG | + | chr6_4:6537430-6537449 | Msa0973820:intron | 20.0% |
| !!! | AAAAGTATATTAGTTTTGGT+GGG | + | chr6_4:6537431-6537450 | Msa0973820:intron | 20.0% |
| !! | GTTTAGTATCTTTTGTATGT+TGG | - | chr6_4:6536329-6536348 | None:intergenic | 25.0% |
| ! | AAAGATACTAAACGAAATCA+AGG | + | chr6_4:6536336-6536355 | Msa0973820:CDS | 25.0% |
| ! | GATGTTATTAAGCTATATGA+AGG | + | chr6_4:6536442-6536461 | Msa0973820:CDS | 25.0% |
| ! | CTGAGTTAAATCTAACAAAT+AGG | + | chr6_4:6536485-6536504 | Msa0973820:CDS | 25.0% |
| ! | TCTCAATTTCCAAACAATTA+TGG | + | chr6_4:6536580-6536599 | Msa0973820:CDS | 25.0% |
| ! | GAGTATTATTAACATCATGA+GGG | - | chr6_4:6536651-6536670 | None:intergenic | 25.0% |
| !! | AGAGTATTATTAACATCATG+AGG | - | chr6_4:6536652-6536671 | None:intergenic | 25.0% |
| ! | TAAATCCTATGAATACAACT+AGG | + | chr6_4:6536692-6536711 | Msa0973820:CDS | 25.0% |
| ! | AAATCCTATGAATACAACTA+GGG | + | chr6_4:6536693-6536712 | Msa0973820:CDS | 25.0% |
| ! | GATGTCATAAAAGAATTTGA+TGG | + | chr6_4:6536736-6536755 | Msa0973820:CDS | 25.0% |
| ! | GACTAAAAGATATGCAATAA+AGG | - | chr6_4:6536907-6536926 | None:intergenic | 25.0% |
| ! | TGTTTGTTCAATGAGTATTT+GGG | + | chr6_4:6536967-6536986 | Msa0973820:intron | 25.0% |
| ! | CCCATAAATTGTCATATAAA+TGG | - | chr6_4:6537033-6537052 | None:intergenic | 25.0% |
| ! | GAAAAGTAGATAGTGTAATT+TGG | + | chr6_4:6537072-6537091 | Msa0973820:intron | 25.0% |
| ! | CATAAAGAGTTACTTCTAAT+AGG | + | chr6_4:6537095-6537114 | Msa0973820:intron | 25.0% |
| ! | AAGAAACTTTAGATAACCAT+TGG | + | chr6_4:6537147-6537166 | Msa0973820:intron | 25.0% |
| !! | TAGGAAACTTTTCAAATGTT+TGG | + | chr6_4:6537242-6537261 | Msa0973820:intron | 25.0% |
| !! | AAACTTTTCAAATGTTTGGT+GGG | + | chr6_4:6537246-6537265 | Msa0973820:intron | 25.0% |
| !!! | AATTTCTAAGATTGTAGTGA+AGG | + | chr6_4:6537310-6537329 | Msa0973820:intron | 25.0% |
| !! | AAATATTTAGGTTTACTGGT+TGG | + | chr6_4:6537346-6537365 | Msa0973820:intron | 25.0% |
| !! | AATATTTAGGTTTACTGGTT+GGG | + | chr6_4:6537347-6537366 | Msa0973820:intron | 25.0% |
| !! | TTCAATGTAGACAATTTTCT+TGG | - | chr6_4:6537379-6537398 | None:intergenic | 25.0% |
| ! | AAAAAGAGAGACAAAAAATG+GGG | - | chr6_4:6537492-6537511 | None:intergenic | 25.0% |
| ! | CAAAAAGAGAGACAAAAAAT+GGG | - | chr6_4:6537493-6537512 | None:intergenic | 25.0% |
| ! | GTATTCAAAGAGAATTTCTT+TGG | + | chr6_4:6537548-6537567 | Msa0973820:intron | 25.0% |
| !! | GTTTAGTATCTTTTGTATGT+TGG | - | chr6_4:6536329-6536348 | None:intergenic | 25.0% |
| ! | AAAGATACTAAACGAAATCA+AGG | + | chr6_4:6536336-6536355 | Msa0973820:CDS | 25.0% |
| ! | GATGTTATTAAGCTATATGA+AGG | + | chr6_4:6536442-6536461 | Msa0973820:CDS | 25.0% |
| ! | CTGAGTTAAATCTAACAAAT+AGG | + | chr6_4:6536485-6536504 | Msa0973820:CDS | 25.0% |
| ! | TCTCAATTTCCAAACAATTA+TGG | + | chr6_4:6536580-6536599 | Msa0973820:CDS | 25.0% |
| ! | GAGTATTATTAACATCATGA+GGG | - | chr6_4:6536651-6536670 | None:intergenic | 25.0% |
| !! | AGAGTATTATTAACATCATG+AGG | - | chr6_4:6536652-6536671 | None:intergenic | 25.0% |
| ! | TAAATCCTATGAATACAACT+AGG | + | chr6_4:6536692-6536711 | Msa0973820:CDS | 25.0% |
| ! | AAATCCTATGAATACAACTA+GGG | + | chr6_4:6536693-6536712 | Msa0973820:CDS | 25.0% |
| ! | GATGTCATAAAAGAATTTGA+TGG | + | chr6_4:6536736-6536755 | Msa0973820:CDS | 25.0% |
| ! | GACTAAAAGATATGCAATAA+AGG | - | chr6_4:6536907-6536926 | None:intergenic | 25.0% |
| ! | TGTTTGTTCAATGAGTATTT+GGG | + | chr6_4:6536967-6536986 | Msa0973820:intron | 25.0% |
| ! | CCCATAAATTGTCATATAAA+TGG | - | chr6_4:6537033-6537052 | None:intergenic | 25.0% |
| ! | GAAAAGTAGATAGTGTAATT+TGG | + | chr6_4:6537072-6537091 | Msa0973820:intron | 25.0% |
| ! | CATAAAGAGTTACTTCTAAT+AGG | + | chr6_4:6537095-6537114 | Msa0973820:intron | 25.0% |
| ! | AAGAAACTTTAGATAACCAT+TGG | + | chr6_4:6537147-6537166 | Msa0973820:intron | 25.0% |
| !! | TAGGAAACTTTTCAAATGTT+TGG | + | chr6_4:6537242-6537261 | Msa0973820:intron | 25.0% |
| !! | AAACTTTTCAAATGTTTGGT+GGG | + | chr6_4:6537246-6537265 | Msa0973820:intron | 25.0% |
| !!! | AATTTCTAAGATTGTAGTGA+AGG | + | chr6_4:6537310-6537329 | Msa0973820:intron | 25.0% |
| !! | AAATATTTAGGTTTACTGGT+TGG | + | chr6_4:6537346-6537365 | Msa0973820:intron | 25.0% |
| !! | AATATTTAGGTTTACTGGTT+GGG | + | chr6_4:6537347-6537366 | Msa0973820:intron | 25.0% |
| !! | TTCAATGTAGACAATTTTCT+TGG | - | chr6_4:6537379-6537398 | None:intergenic | 25.0% |
| ! | AAAAAGAGAGACAAAAAATG+GGG | - | chr6_4:6537492-6537511 | None:intergenic | 25.0% |
| ! | CAAAAAGAGAGACAAAAAAT+GGG | - | chr6_4:6537493-6537512 | None:intergenic | 25.0% |
| ! | GTATTCAAAGAGAATTTCTT+TGG | + | chr6_4:6537548-6537567 | Msa0973820:intron | 25.0% |
| GAATATTCGTGCAAAATTTC+CGG | + | chr6_4:6536405-6536424 | Msa0973820:CDS | 30.0% | |
| !!! | GAAGATTTTGTTGTTGTGAA+TGG | - | chr6_4:6536537-6536556 | None:intergenic | 30.0% |
| TTGAGAACTAGTATAAGGTA+GGG | - | chr6_4:6536566-6536585 | None:intergenic | 30.0% | |
| ATTGAGAACTAGTATAAGGT+AGG | - | chr6_4:6536567-6536586 | None:intergenic | 30.0% | |
| GGAAATTGAGAACTAGTATA+AGG | - | chr6_4:6536571-6536590 | None:intergenic | 30.0% | |
| ! | TGGCGATAAATTTGATAGTT+TGG | + | chr6_4:6536756-6536775 | Msa0973820:CDS | 30.0% |
| GTGTTTGTTCAATGAGTATT+TGG | + | chr6_4:6536966-6536985 | Msa0973820:intron | 30.0% | |
| GTTTGTTCAATGAGTATTTG+GGG | + | chr6_4:6536968-6536987 | Msa0973820:intron | 30.0% | |
| TTTGTTCAATGAGTATTTGG+GGG | + | chr6_4:6536969-6536988 | Msa0973820:intron | 30.0% | |
| ACTTCTAATAGGATTGCATT+TGG | + | chr6_4:6537106-6537125 | Msa0973820:intron | 30.0% | |
| TGAAAAGTTAAACGTCAAAC+CGG | - | chr6_4:6537210-6537229 | None:intergenic | 30.0% | |
| ! | GAAACTTTTCAAATGTTTGG+TGG | + | chr6_4:6537245-6537264 | Msa0973820:intron | 30.0% |
| !! | AACTTTTCAAATGTTTGGTG+GGG | + | chr6_4:6537247-6537266 | Msa0973820:intron | 30.0% |
| ! | ATATTTAGGTTTACTGGTTG+GGG | + | chr6_4:6537348-6537367 | Msa0973820:intron | 30.0% |
| CTACATTGAATCCCTTTAAT+AGG | + | chr6_4:6537389-6537408 | Msa0973820:intron | 30.0% | |
| !! | TTATCGACTTTAGTGCTAAA+TGG | + | chr6_4:6537463-6537482 | Msa0973820:intron | 30.0% |
| CCAAAAAGAGAGACAAAAAA+TGG | - | chr6_4:6537494-6537513 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTGTCTCTCTTTT+TGG | + | chr6_4:6537491-6537510 | Msa0973820:intron | 30.0% |
| ! | AAAGAGAATTTCTTTGGAGA+GGG | + | chr6_4:6537554-6537573 | Msa0973820:intron | 30.0% |
| TGGGGAATATATTACAAGTT+TGG | + | chr6_4:6537755-6537774 | Msa0973820:CDS | 30.0% | |
| TATTACAAGTTTGGTCGATT+AGG | + | chr6_4:6537764-6537783 | Msa0973820:CDS | 30.0% | |
| ATTACAAGTTTGGTCGATTA+GGG | + | chr6_4:6537765-6537784 | Msa0973820:CDS | 30.0% | |
| CACCAAATTGAAGCATATAT+AGG | - | chr6_4:6537804-6537823 | None:intergenic | 30.0% | |
| CTATATATGCTTCAATTTGG+TGG | + | chr6_4:6537802-6537821 | Msa0973820:CDS | 30.0% | |
| !!! | TGGAAAGGATTTAGCTTTTT+CGG | + | chr6_4:6537822-6537841 | Msa0973820:CDS | 30.0% |
| !!! | TTTAGCTTTTTCGGAAAATC+TGG | + | chr6_4:6537831-6537850 | Msa0973820:CDS | 30.0% |
| GAATATTCGTGCAAAATTTC+CGG | + | chr6_4:6536405-6536424 | Msa0973820:CDS | 30.0% | |
| !!! | GAAGATTTTGTTGTTGTGAA+TGG | - | chr6_4:6536537-6536556 | None:intergenic | 30.0% |
| TTGAGAACTAGTATAAGGTA+GGG | - | chr6_4:6536566-6536585 | None:intergenic | 30.0% | |
| ATTGAGAACTAGTATAAGGT+AGG | - | chr6_4:6536567-6536586 | None:intergenic | 30.0% | |
| GGAAATTGAGAACTAGTATA+AGG | - | chr6_4:6536571-6536590 | None:intergenic | 30.0% | |
| ! | TGGCGATAAATTTGATAGTT+TGG | + | chr6_4:6536756-6536775 | Msa0973820:CDS | 30.0% |
| GTGTTTGTTCAATGAGTATT+TGG | + | chr6_4:6536966-6536985 | Msa0973820:intron | 30.0% | |
| GTTTGTTCAATGAGTATTTG+GGG | + | chr6_4:6536968-6536987 | Msa0973820:intron | 30.0% | |
| TTTGTTCAATGAGTATTTGG+GGG | + | chr6_4:6536969-6536988 | Msa0973820:intron | 30.0% | |
| ACTTCTAATAGGATTGCATT+TGG | + | chr6_4:6537106-6537125 | Msa0973820:intron | 30.0% | |
| TGAAAAGTTAAACGTCAAAC+CGG | - | chr6_4:6537210-6537229 | None:intergenic | 30.0% | |
| ! | GAAACTTTTCAAATGTTTGG+TGG | + | chr6_4:6537245-6537264 | Msa0973820:intron | 30.0% |
| !! | AACTTTTCAAATGTTTGGTG+GGG | + | chr6_4:6537247-6537266 | Msa0973820:intron | 30.0% |
| ! | ATATTTAGGTTTACTGGTTG+GGG | + | chr6_4:6537348-6537367 | Msa0973820:intron | 30.0% |
| CTACATTGAATCCCTTTAAT+AGG | + | chr6_4:6537389-6537408 | Msa0973820:intron | 30.0% | |
| !! | TTATCGACTTTAGTGCTAAA+TGG | + | chr6_4:6537463-6537482 | Msa0973820:intron | 30.0% |
| CCAAAAAGAGAGACAAAAAA+TGG | - | chr6_4:6537494-6537513 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTGTCTCTCTTTT+TGG | + | chr6_4:6537491-6537510 | Msa0973820:intron | 30.0% |
| ! | AAAGAGAATTTCTTTGGAGA+GGG | + | chr6_4:6537554-6537573 | Msa0973820:intron | 30.0% |
| TGGGGAATATATTACAAGTT+TGG | + | chr6_4:6537755-6537774 | Msa0973820:CDS | 30.0% | |
| TATTACAAGTTTGGTCGATT+AGG | + | chr6_4:6537764-6537783 | Msa0973820:CDS | 30.0% | |
| ATTACAAGTTTGGTCGATTA+GGG | + | chr6_4:6537765-6537784 | Msa0973820:CDS | 30.0% | |
| CACCAAATTGAAGCATATAT+AGG | - | chr6_4:6537804-6537823 | None:intergenic | 30.0% | |
| CTATATATGCTTCAATTTGG+TGG | + | chr6_4:6537802-6537821 | Msa0973820:CDS | 30.0% | |
| !!! | TGGAAAGGATTTAGCTTTTT+CGG | + | chr6_4:6537822-6537841 | Msa0973820:CDS | 30.0% |
| !!! | TTTAGCTTTTTCGGAAAATC+TGG | + | chr6_4:6537831-6537850 | Msa0973820:CDS | 30.0% |
| ! | ATCAAAGAAGGAAGTGTACA+AGG | + | chr6_4:6536227-6536246 | Msa0973820:CDS | 35.0% |
| ! | TCAAAGAAGGAAGTGTACAA+GGG | + | chr6_4:6536228-6536247 | Msa0973820:CDS | 35.0% |
| !!! | AACATTTTTGGTCTATCTGC+TGG | - | chr6_4:6536277-6536296 | None:intergenic | 35.0% |
| GCAGATAGACCAAAAATGTT+CGG | + | chr6_4:6536277-6536296 | Msa0973820:CDS | 35.0% | |
| CTAAACGAAATCAAGGACAA+AGG | + | chr6_4:6536343-6536362 | Msa0973820:CDS | 35.0% | |
| ACATCAAGACATCCATTTAC+CGG | - | chr6_4:6536427-6536446 | None:intergenic | 35.0% | |
| CTAACCCTAGTTGTATTCAT+AGG | - | chr6_4:6536700-6536719 | None:intergenic | 35.0% | |
| TTTCAACATAGATGACCTCA+TGG | + | chr6_4:6536792-6536811 | Msa0973820:CDS | 35.0% | |
| AGATAACCATTGGACGTTAA+CGG | + | chr6_4:6537157-6537176 | Msa0973820:intron | 35.0% | |
| CATCTCTAAACCTATCAACA+CGG | - | chr6_4:6537183-6537202 | None:intergenic | 35.0% | |
| !! | TTTTTGGAAGATGTCGATCA+AGG | + | chr6_4:6537507-6537526 | Msa0973820:intron | 35.0% |
| ! | CAAAGAGAATTTCTTTGGAG+AGG | + | chr6_4:6537553-6537572 | Msa0973820:intron | 35.0% |
| ! | AAGAGAATTTCTTTGGAGAG+GGG | + | chr6_4:6537555-6537574 | Msa0973820:intron | 35.0% |
| ATTTGTCAACCGAAAAGCAA+TGG | + | chr6_4:6537619-6537638 | Msa0973820:CDS | 35.0% | |
| TTTGTCAACCGAAAAGCAAT+GGG | + | chr6_4:6537620-6537639 | Msa0973820:CDS | 35.0% | |
| AGGAGTGAAAGATGTTAGAA+TGG | + | chr6_4:6537648-6537667 | Msa0973820:CDS | 35.0% | |
| GGCCTATATATGCTTCAATT+TGG | + | chr6_4:6537799-6537818 | Msa0973820:CDS | 35.0% | |
| ! | TATGCTTCAATTTGGTGGAA+AGG | + | chr6_4:6537807-6537826 | Msa0973820:CDS | 35.0% |
| ! | ATCAAAGAAGGAAGTGTACA+AGG | + | chr6_4:6536227-6536246 | Msa0973820:CDS | 35.0% |
| ! | TCAAAGAAGGAAGTGTACAA+GGG | + | chr6_4:6536228-6536247 | Msa0973820:CDS | 35.0% |
| !!! | AACATTTTTGGTCTATCTGC+TGG | - | chr6_4:6536277-6536296 | None:intergenic | 35.0% |
| GCAGATAGACCAAAAATGTT+CGG | + | chr6_4:6536277-6536296 | Msa0973820:CDS | 35.0% | |
| CTAAACGAAATCAAGGACAA+AGG | + | chr6_4:6536343-6536362 | Msa0973820:CDS | 35.0% | |
| ACATCAAGACATCCATTTAC+CGG | - | chr6_4:6536427-6536446 | None:intergenic | 35.0% | |
| CTAACCCTAGTTGTATTCAT+AGG | - | chr6_4:6536700-6536719 | None:intergenic | 35.0% | |
| TTTCAACATAGATGACCTCA+TGG | + | chr6_4:6536792-6536811 | Msa0973820:CDS | 35.0% | |
| AGATAACCATTGGACGTTAA+CGG | + | chr6_4:6537157-6537176 | Msa0973820:intron | 35.0% | |
| CATCTCTAAACCTATCAACA+CGG | - | chr6_4:6537183-6537202 | None:intergenic | 35.0% | |
| !! | TTTTTGGAAGATGTCGATCA+AGG | + | chr6_4:6537507-6537526 | Msa0973820:intron | 35.0% |
| ! | CAAAGAGAATTTCTTTGGAG+AGG | + | chr6_4:6537553-6537572 | Msa0973820:intron | 35.0% |
| ! | AAGAGAATTTCTTTGGAGAG+GGG | + | chr6_4:6537555-6537574 | Msa0973820:intron | 35.0% |
| ATTTGTCAACCGAAAAGCAA+TGG | + | chr6_4:6537619-6537638 | Msa0973820:CDS | 35.0% | |
| TTTGTCAACCGAAAAGCAAT+GGG | + | chr6_4:6537620-6537639 | Msa0973820:CDS | 35.0% | |
| AGGAGTGAAAGATGTTAGAA+TGG | + | chr6_4:6537648-6537667 | Msa0973820:CDS | 35.0% | |
| GGCCTATATATGCTTCAATT+TGG | + | chr6_4:6537799-6537818 | Msa0973820:CDS | 35.0% | |
| ! | TATGCTTCAATTTGGTGGAA+AGG | + | chr6_4:6537807-6537826 | Msa0973820:CDS | 35.0% |
| CAGCATGCAAGTATCAAAGA+AGG | + | chr6_4:6536215-6536234 | Msa0973820:CDS | 40.0% | |
| GGTCTATCTGCTGGAAAATA+AGG | - | chr6_4:6536268-6536287 | None:intergenic | 40.0% | |
| CGTGCAAAATTTCCGGTAAA+TGG | + | chr6_4:6536412-6536431 | Msa0973820:CDS | 40.0% | |
| AGAACTAGTATAAGGTAGGG+AGG | - | chr6_4:6536563-6536582 | None:intergenic | 40.0% | |
| TGAAGTCAACATCATCCATG+AGG | - | chr6_4:6536810-6536829 | None:intergenic | 40.0% | |
| !! | TGGATGATGTTGACTTCAGA+AGG | + | chr6_4:6536812-6536831 | Msa0973820:CDS | 40.0% |
| ! | CGTGTTGATAGGTTTAGAGA+TGG | + | chr6_4:6537181-6537200 | Msa0973820:intron | 40.0% |
| ATAGGTTTAGAGATGGCATC+CGG | + | chr6_4:6537188-6537207 | Msa0973820:intron | 40.0% | |
| ! | AGGCAGTGCAAAAGTTTGTT+GGG | + | chr6_4:6537582-6537601 | Msa0973820:CDS | 40.0% |
| !! | CAAAAGTTTGTTGGGAGATG+TGG | + | chr6_4:6537590-6537609 | Msa0973820:CDS | 40.0% |
| !! | CCTAATCTCCCATTGCTTTT+CGG | - | chr6_4:6537631-6537650 | None:intergenic | 40.0% |
| ! | ATCTGAGCCTTTTGACAAAG+TGG | + | chr6_4:6537674-6537693 | Msa0973820:CDS | 40.0% |
| TCTGTCTCCACTTTGTCAAA+AGG | - | chr6_4:6537684-6537703 | None:intergenic | 40.0% | |
| ! | GAGACAGAAGTTGATCCAAA+CGG | + | chr6_4:6537696-6537715 | Msa0973820:CDS | 40.0% |
| !! | TCGATTAGGGAAGTGTTTCT+TGG | + | chr6_4:6537778-6537797 | Msa0973820:CDS | 40.0% |
| !!! | GCTTTTTCGGAAAATCTGGT+TGG | + | chr6_4:6537835-6537854 | Msa0973820:CDS | 40.0% |
| CAGCATGCAAGTATCAAAGA+AGG | + | chr6_4:6536215-6536234 | Msa0973820:CDS | 40.0% | |
| GGTCTATCTGCTGGAAAATA+AGG | - | chr6_4:6536268-6536287 | None:intergenic | 40.0% | |
| CGTGCAAAATTTCCGGTAAA+TGG | + | chr6_4:6536412-6536431 | Msa0973820:CDS | 40.0% | |
| AGAACTAGTATAAGGTAGGG+AGG | - | chr6_4:6536563-6536582 | None:intergenic | 40.0% | |
| TGAAGTCAACATCATCCATG+AGG | - | chr6_4:6536810-6536829 | None:intergenic | 40.0% | |
| !! | TGGATGATGTTGACTTCAGA+AGG | + | chr6_4:6536812-6536831 | Msa0973820:CDS | 40.0% |
| ! | CGTGTTGATAGGTTTAGAGA+TGG | + | chr6_4:6537181-6537200 | Msa0973820:intron | 40.0% |
| ATAGGTTTAGAGATGGCATC+CGG | + | chr6_4:6537188-6537207 | Msa0973820:intron | 40.0% | |
| ! | AGGCAGTGCAAAAGTTTGTT+GGG | + | chr6_4:6537582-6537601 | Msa0973820:CDS | 40.0% |
| !! | CAAAAGTTTGTTGGGAGATG+TGG | + | chr6_4:6537590-6537609 | Msa0973820:CDS | 40.0% |
| !! | CCTAATCTCCCATTGCTTTT+CGG | - | chr6_4:6537631-6537650 | None:intergenic | 40.0% |
| ! | ATCTGAGCCTTTTGACAAAG+TGG | + | chr6_4:6537674-6537693 | Msa0973820:CDS | 40.0% |
| TCTGTCTCCACTTTGTCAAA+AGG | - | chr6_4:6537684-6537703 | None:intergenic | 40.0% | |
| ! | GAGACAGAAGTTGATCCAAA+CGG | + | chr6_4:6537696-6537715 | Msa0973820:CDS | 40.0% |
| !! | TCGATTAGGGAAGTGTTTCT+TGG | + | chr6_4:6537778-6537797 | Msa0973820:CDS | 40.0% |
| !!! | GCTTTTTCGGAAAATCTGGT+TGG | + | chr6_4:6537835-6537854 | Msa0973820:CDS | 40.0% |
| ! | ACAACTAGGGTTAGCAACAG+TGG | + | chr6_4:6536706-6536725 | Msa0973820:CDS | 45.0% |
| CATTTGGATGACGCTAGCAT+AGG | + | chr6_4:6537122-6537141 | Msa0973820:intron | 45.0% | |
| ! | TTTCTTTGGAGAGGGGTAAG+AGG | + | chr6_4:6537562-6537581 | Msa0973820:CDS | 45.0% |
| GAGGCAGTGCAAAAGTTTGT+TGG | + | chr6_4:6537581-6537600 | Msa0973820:CDS | 45.0% | |
| CCGAAAAGCAATGGGAGATT+AGG | + | chr6_4:6537628-6537647 | Msa0973820:CDS | 45.0% | |
| !!! | GTTTTGGAAGGTGGTGTTGA+TGG | + | chr6_4:6537726-6537745 | Msa0973820:CDS | 45.0% |
| !! | GTGGTGTTGATGGCGTATAT+GGG | + | chr6_4:6537736-6537755 | Msa0973820:CDS | 45.0% |
| !! | TGGTGTTGATGGCGTATATG+GGG | + | chr6_4:6537737-6537756 | Msa0973820:CDS | 45.0% |
| ! | ACAACTAGGGTTAGCAACAG+TGG | + | chr6_4:6536706-6536725 | Msa0973820:CDS | 45.0% |
| CATTTGGATGACGCTAGCAT+AGG | + | chr6_4:6537122-6537141 | Msa0973820:intron | 45.0% | |
| ! | TTTCTTTGGAGAGGGGTAAG+AGG | + | chr6_4:6537562-6537581 | Msa0973820:CDS | 45.0% |
| GAGGCAGTGCAAAAGTTTGT+TGG | + | chr6_4:6537581-6537600 | Msa0973820:CDS | 45.0% | |
| CCGAAAAGCAATGGGAGATT+AGG | + | chr6_4:6537628-6537647 | Msa0973820:CDS | 45.0% | |
| !!! | GTTTTGGAAGGTGGTGTTGA+TGG | + | chr6_4:6537726-6537745 | Msa0973820:CDS | 45.0% |
| !! | GTGGTGTTGATGGCGTATAT+GGG | + | chr6_4:6537736-6537755 | Msa0973820:CDS | 45.0% |
| !! | TGGTGTTGATGGCGTATATG+GGG | + | chr6_4:6537737-6537756 | Msa0973820:CDS | 45.0% |
| !! | TGAGCGTCGCCGAACATTTT+TGG | - | chr6_4:6536289-6536308 | None:intergenic | 50.0% |
| ! | ACGTTAACGGCCGTGTTGAT+AGG | + | chr6_4:6537170-6537189 | Msa0973820:intron | 50.0% |
| GGAAGATGTCGATCAAGGTG+TGG | + | chr6_4:6537512-6537531 | Msa0973820:intron | 50.0% | |
| ! | TCCAAACGGAGTCCTCGTTT+TGG | + | chr6_4:6537710-6537729 | Msa0973820:CDS | 50.0% |
| TCCAAAACGAGGACTCCGTT+TGG | - | chr6_4:6537714-6537733 | None:intergenic | 50.0% | |
| !! | AACGGAGTCCTCGTTTTGGA+AGG | + | chr6_4:6537714-6537733 | Msa0973820:CDS | 50.0% |
| CAACACCACCTTCCAAAACG+AGG | - | chr6_4:6537725-6537744 | None:intergenic | 50.0% | |
| !! | GGTGGTGTTGATGGCGTATA+TGG | + | chr6_4:6537735-6537754 | Msa0973820:CDS | 50.0% |
| !! | TGAGCGTCGCCGAACATTTT+TGG | - | chr6_4:6536289-6536308 | None:intergenic | 50.0% |
| ! | ACGTTAACGGCCGTGTTGAT+AGG | + | chr6_4:6537170-6537189 | Msa0973820:intron | 50.0% |
| GGAAGATGTCGATCAAGGTG+TGG | + | chr6_4:6537512-6537531 | Msa0973820:intron | 50.0% | |
| ! | TCCAAACGGAGTCCTCGTTT+TGG | + | chr6_4:6537710-6537729 | Msa0973820:CDS | 50.0% |
| TCCAAAACGAGGACTCCGTT+TGG | - | chr6_4:6537714-6537733 | None:intergenic | 50.0% | |
| !! | AACGGAGTCCTCGTTTTGGA+AGG | + | chr6_4:6537714-6537733 | Msa0973820:CDS | 50.0% |
| CAACACCACCTTCCAAAACG+AGG | - | chr6_4:6537725-6537744 | None:intergenic | 50.0% | |
| !! | GGTGGTGTTGATGGCGTATA+TGG | + | chr6_4:6537735-6537754 | Msa0973820:CDS | 50.0% |
| GGCGACGCTCATCGTTTGTT+TGG | + | chr6_4:6536298-6536317 | Msa0973820:CDS | 55.0% | |
| ACACGGCCGTTAACGTCCAA+TGG | - | chr6_4:6537166-6537185 | None:intergenic | 55.0% | |
| !!! | GGAGTCCTCGTTTTGGAAGG+TGG | + | chr6_4:6537717-6537736 | Msa0973820:CDS | 55.0% |
| GGCGACGCTCATCGTTTGTT+TGG | + | chr6_4:6536298-6536317 | Msa0973820:CDS | 55.0% | |
| ACACGGCCGTTAACGTCCAA+TGG | - | chr6_4:6537166-6537185 | None:intergenic | 55.0% | |
| !!! | GGAGTCCTCGTTTTGGAAGG+TGG | + | chr6_4:6537717-6537736 | Msa0973820:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 6536193 | 6537867 | 6536193 | ID=Msa0973820;Name=Msa0973820 |
| chr6_4 | mRNA | 6536193 | 6537867 | 6536193 | ID=Msa0973820-mRNA-1;Parent=Msa0973820;Name=Msa0973820-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.5|1|1|2|0|316 |
| chr6_4 | exon | 6536193 | 6536833 | 6536193 | ID=Msa0973820-mRNA-1:exon:2631;Parent=Msa0973820-mRNA-1 |
| chr6_4 | exon | 6537558 | 6537867 | 6537558 | ID=Msa0973820-mRNA-1:exon:2632;Parent=Msa0973820-mRNA-1 |
| chr6_4 | CDS | 6536193 | 6536833 | 6536193 | ID=Msa0973820-mRNA-1:cds;Parent=Msa0973820-mRNA-1 |
| chr6_4 | CDS | 6537558 | 6537867 | 6537558 | ID=Msa0973820-mRNA-1:cds;Parent=Msa0973820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
