Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973830 | KEH24949.1 | 58.247 | 194 | 55 | 3 | 39 | 216 | 69 | 252 | 1.30e-54 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973830 | A0A072U5D2 | 58.247 | 194 | 55 | 3 | 39 | 216 | 69 | 252 | 6.19e-55 | 189 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0973830 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0973830 | MtrunA17_Chr1g0172961 | 54.478 | 134 | 19 | 1 | 108 | 199 | 82 | 215 | 8.31e-37 | 129 |
| Msa0973830 | MtrunA17_Chr4g0037041 | 67.213 | 61 | 20 | 0 | 93 | 153 | 57 | 117 | 2.25e-19 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTGTGGGCGAAATTTA+TGG | 0.184315 | 6_4:+6539828 | Msa0973830:CDS |
| ATTGAGAGGCATAATGTTCT+TGG | 0.330870 | 6_4:+6539746 | Msa0973830:CDS |
| CTATGAGAAGAATGAATATA+TGG | 0.374958 | 6_4:+6539448 | None:intergenic |
| CCGTCAAACTGAAGCGGGCC+TGG | 0.378965 | 6_4:-6539855 | None:intergenic |
| AGCAGGCTGTTTCATGGGAT+TGG | 0.388672 | 6_4:+6541584 | Msa0973830:intron |
| TATAATATTGCACCATGAAA+AGG | 0.397705 | 6_4:+6540628 | Msa0973830:CDS |
| TGGCATTTGCACCAGGGTCC+AGG | 0.412294 | 6_4:-6539879 | None:intergenic |
| TTATCTAGCAGGCTGTTTCA+TGG | 0.425391 | 6_4:+6541578 | Msa0973830:intron |
| CCTCTCAATGTAATAGTAGT+TGG | 0.435259 | 6_4:-6539732 | None:intergenic |
| AGTTTGACGGCCCTGGACCC+TGG | 0.442359 | 6_4:+6539868 | Msa0973830:CDS |
| CCAGGCCCGCTTCAGTTTGA+CGG | 0.444861 | 6_4:+6539855 | Msa0973830:CDS |
| TTTCCGACTGATGTTAATCC+GGG | 0.452607 | 6_4:-6539696 | None:intergenic |
| ATAGTAGTTGGATGAAAAGC+TGG | 0.456199 | 6_4:-6539720 | None:intergenic |
| CCGCTTCAGTTTGACGGCCC+TGG | 0.456706 | 6_4:+6539861 | Msa0973830:CDS |
| ACAAGCATGGCATTTGCACC+AGG | 0.460421 | 6_4:-6539886 | None:intergenic |
| TCGAGTATAACCACTGCATT+GGG | 0.472505 | 6_4:-6539559 | None:intergenic |
| TCAATCTCCAACCACATCCT+TGG | 0.474432 | 6_4:+6540664 | Msa0973830:CDS |
| TTTAAATTGCTCCAAGGATG+TGG | 0.474580 | 6_4:-6540675 | None:intergenic |
| TATCTAGCAGGCTGTTTCAT+GGG | 0.476646 | 6_4:+6541579 | Msa0973830:intron |
| GGTTGGAGATTGAATACTCT+TGG | 0.478368 | 6_4:-6540654 | None:intergenic |
| TCTGCAAACAAGTGGAAACT+TGG | 0.481466 | 6_4:+6539488 | Msa0973830:CDS |
| ATCGAGTATAACCACTGCAT+TGG | 0.495197 | 6_4:-6539560 | None:intergenic |
| AATGCGACTAGCTTTCTTGT+GGG | 0.508915 | 6_4:+6539816 | Msa0973830:CDS |
| ATAATATTGCACCATGAAAA+GGG | 0.510941 | 6_4:+6540629 | Msa0973830:CDS |
| GGCGAAATTTATGGAAATCC+AGG | 0.515330 | 6_4:+6539837 | Msa0973830:CDS |
| TTGAAATTTAAATTGCTCCA+AGG | 0.521272 | 6_4:-6540681 | None:intergenic |
| AATTGCTCCAAGGATGTGGT+TGG | 0.521764 | 6_4:-6540671 | None:intergenic |
| AAACACATTGTCGTTGGAGC+AGG | 0.524758 | 6_4:-6539518 | None:intergenic |
| CAGGGCCGTCAAACTGAAGC+GGG | 0.525172 | 6_4:-6539860 | None:intergenic |
| TGTCCATAATCCACCTTCAC+AGG | 0.525252 | 6_4:-6541631 | None:intergenic |
| GGCATTTGCACCAGGGTCCA+GGG | 0.528204 | 6_4:-6539878 | None:intergenic |
| AACTTGATCAGTAAGTAAGC+TGG | 0.539255 | 6_4:-6541608 | None:intergenic |
| CATGGTGCAATATTATATGT+CGG | 0.548944 | 6_4:-6540622 | None:intergenic |
| CCAACTACTATTACATTGAG+AGG | 0.554865 | 6_4:+6539732 | Msa0973830:CDS |
| GAAAGCTAGTCGCATTTCTA+CGG | 0.557940 | 6_4:-6539809 | None:intergenic |
| TTATAATAACGGTGAAGCAT+TGG | 0.558265 | 6_4:+6539664 | Msa0973830:CDS |
| TTGAAGAATCTGCAAACAAG+TGG | 0.561015 | 6_4:+6539480 | Msa0973830:CDS |
| AGAACAAAACACATTGTCGT+TGG | 0.561444 | 6_4:-6539524 | None:intergenic |
| AAGCATTGGTCTCTGAATCC+CGG | 0.562224 | 6_4:+6539678 | Msa0973830:CDS |
| AAATGCGACTAGCTTTCTTG+TGG | 0.563383 | 6_4:+6539815 | Msa0973830:CDS |
| GATATGTCTTGCGCTACTGT+CGG | 0.563627 | 6_4:+6540835 | Msa0973830:CDS |
| TGGTGAAACATCGGCGACCA+AGG | 0.587620 | 6_4:+6540945 | Msa0973830:CDS |
| TAGTTGTCCTGTTTGCAACA+AGG | 0.599547 | 6_4:+6540574 | Msa0973830:CDS |
| GAGAAACAAGTTAGTGACAT+TGG | 0.605999 | 6_4:+6540925 | Msa0973830:CDS |
| CCAGGGCCGTCAAACTGAAG+CGG | 0.606100 | 6_4:-6539861 | None:intergenic |
| TACTGATCAAGTTCCTGTGA+AGG | 0.615023 | 6_4:+6541618 | Msa0973830:CDS |
| GCTCAAAGCATCAACCATTG+TGG | 0.616700 | 6_4:+6540888 | Msa0973830:CDS |
| ACTGTCGGTGGTGATGATCA+TGG | 0.634898 | 6_4:+6540850 | Msa0973830:CDS |
| ATGTCTTGCGCTACTGTCGG+TGG | 0.635793 | 6_4:+6540838 | Msa0973830:CDS |
| AATCCCGGATTAACATCAGT+CGG | 0.645340 | 6_4:+6539693 | Msa0973830:CDS |
| AACAGAAAGAGTTACAAGCA+TGG | 0.646831 | 6_4:-6539899 | None:intergenic |
| TAGTGACATTGGTGAAACAT+CGG | 0.647580 | 6_4:+6540936 | Msa0973830:CDS |
| GATCTTGTCATTATCCACAA+TGG | 0.651959 | 6_4:-6540902 | None:intergenic |
| CAAGCATGGCATTTGCACCA+GGG | 0.655447 | 6_4:-6539885 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATTTTAGGTTATAATAA+CGG | + | chr6_4:6539653-6539672 | Msa0973830:intron | 15.0% |
| !! | TATTATAATAAATGTTGCAA+GGG | - | chr6_4:6539974-6539993 | None:intergenic | 15.0% |
| !! | ATATTATAATAAATGTTGCA+AGG | - | chr6_4:6539975-6539994 | None:intergenic | 15.0% |
| !!! | TGAATTTTAGGTTATAATAA+CGG | + | chr6_4:6539653-6539672 | Msa0973830:intron | 15.0% |
| !! | TATTATAATAAATGTTGCAA+GGG | - | chr6_4:6539974-6539993 | None:intergenic | 15.0% |
| !! | ATATTATAATAAATGTTGCA+AGG | - | chr6_4:6539975-6539994 | None:intergenic | 15.0% |
| !!! | TTGAAATTGCAATGAATTTT+AGG | + | chr6_4:6539641-6539660 | Msa0973830:intron | 20.0% |
| !! | ATATCATTGAATGAATGAAA+AGG | - | chr6_4:6540385-6540404 | None:intergenic | 20.0% |
| !! | ATTATTATTAGTATTCACCT+TGG | - | chr6_4:6540965-6540984 | None:intergenic | 20.0% |
| !! | TTACATAATGTATTTACTTG+CGG | + | chr6_4:6541396-6541415 | Msa0973830:intron | 20.0% |
| !!! | TTGAAATTGCAATGAATTTT+AGG | + | chr6_4:6539641-6539660 | Msa0973830:intron | 20.0% |
| !! | ATATCATTGAATGAATGAAA+AGG | - | chr6_4:6540385-6540404 | None:intergenic | 20.0% |
| !! | ATTATTATTAGTATTCACCT+TGG | - | chr6_4:6540965-6540984 | None:intergenic | 20.0% |
| !! | TTACATAATGTATTTACTTG+CGG | + | chr6_4:6541396-6541415 | Msa0973830:intron | 20.0% |
| !! | TGATCTAAAGTTAAATGAGT+TGG | + | chr6_4:6540052-6540071 | Msa0973830:intron | 25.0% |
| ! | ACTTGAATGCATGATATATA+TGG | - | chr6_4:6540191-6540210 | None:intergenic | 25.0% |
| !! | TGCTATTACTCTAGAAATAA+CGG | + | chr6_4:6540277-6540296 | Msa0973830:intron | 25.0% |
| ! | AATGATATTGAGAAATCTCA+AGG | + | chr6_4:6540397-6540416 | Msa0973830:intron | 25.0% |
| !!! | CAAGGTTTTTTCATCTATTA+AGG | + | chr6_4:6540592-6540611 | Msa0973830:CDS | 25.0% |
| ! | TATAATATTGCACCATGAAA+AGG | + | chr6_4:6540628-6540647 | Msa0973830:CDS | 25.0% |
| ! | ATAATATTGCACCATGAAAA+GGG | + | chr6_4:6540629-6540648 | Msa0973830:CDS | 25.0% |
| ! | TTGAAATTTAAATTGCTCCA+AGG | - | chr6_4:6540684-6540703 | None:intergenic | 25.0% |
| !! | GAGCAATTTAAATTTCAAGT+TGG | + | chr6_4:6540686-6540705 | Msa0973830:intron | 25.0% |
| ! | ATTGATCATGAACATCTTAA+TGG | + | chr6_4:6540796-6540815 | Msa0973830:intron | 25.0% |
| ! | AGATATATTATTGTGCTCAA+TGG | + | chr6_4:6541084-6541103 | Msa0973830:intron | 25.0% |
| ! | ATTATGTAGTGTCTTTGTAT+TGG | - | chr6_4:6541459-6541478 | None:intergenic | 25.0% |
| ! | AAGATATACCTAATTCTTTG+TGG | - | chr6_4:6541513-6541532 | None:intergenic | 25.0% |
| !! | TGATCTAAAGTTAAATGAGT+TGG | + | chr6_4:6540052-6540071 | Msa0973830:intron | 25.0% |
| ! | ACTTGAATGCATGATATATA+TGG | - | chr6_4:6540191-6540210 | None:intergenic | 25.0% |
| !! | TGCTATTACTCTAGAAATAA+CGG | + | chr6_4:6540277-6540296 | Msa0973830:intron | 25.0% |
| ! | AATGATATTGAGAAATCTCA+AGG | + | chr6_4:6540397-6540416 | Msa0973830:intron | 25.0% |
| !!! | CAAGGTTTTTTCATCTATTA+AGG | + | chr6_4:6540592-6540611 | Msa0973830:CDS | 25.0% |
| ! | TATAATATTGCACCATGAAA+AGG | + | chr6_4:6540628-6540647 | Msa0973830:CDS | 25.0% |
| ! | ATAATATTGCACCATGAAAA+GGG | + | chr6_4:6540629-6540648 | Msa0973830:CDS | 25.0% |
| ! | TTGAAATTTAAATTGCTCCA+AGG | - | chr6_4:6540684-6540703 | None:intergenic | 25.0% |
| !! | GAGCAATTTAAATTTCAAGT+TGG | + | chr6_4:6540686-6540705 | Msa0973830:intron | 25.0% |
| ! | ATTGATCATGAACATCTTAA+TGG | + | chr6_4:6540796-6540815 | Msa0973830:intron | 25.0% |
| ! | AGATATATTATTGTGCTCAA+TGG | + | chr6_4:6541084-6541103 | Msa0973830:intron | 25.0% |
| ! | ATTATGTAGTGTCTTTGTAT+TGG | - | chr6_4:6541459-6541478 | None:intergenic | 25.0% |
| ! | AAGATATACCTAATTCTTTG+TGG | - | chr6_4:6541513-6541532 | None:intergenic | 25.0% |
| TTATAATAACGGTGAAGCAT+TGG | + | chr6_4:6539664-6539683 | Msa0973830:CDS | 30.0% | |
| ! | AGAGATTGCCTTATTATCTA+AGG | + | chr6_4:6540247-6540266 | Msa0973830:intron | 30.0% |
| ! | GAGATTGCCTTATTATCTAA+GGG | + | chr6_4:6540248-6540267 | Msa0973830:intron | 30.0% |
| ATCATGTCCCTTAGATAATA+AGG | - | chr6_4:6540258-6540277 | None:intergenic | 30.0% | |
| ! | TTACTCTAGAAATAACGGTT+AGG | + | chr6_4:6540282-6540301 | Msa0973830:intron | 30.0% |
| TCTGAGTTTATGTCATTGAA+AGG | + | chr6_4:6540325-6540344 | Msa0973830:intron | 30.0% | |
| GGATTATAAAAGGAACAAGA+AGG | - | chr6_4:6540355-6540374 | None:intergenic | 30.0% | |
| ! | AGGAGAACATGGATTATAAA+AGG | - | chr6_4:6540365-6540384 | None:intergenic | 30.0% |
| AATGAATGAAAAGGAGAACA+TGG | - | chr6_4:6540376-6540395 | None:intergenic | 30.0% | |
| ACGCAATCATGCTATTAATA+AGG | + | chr6_4:6540529-6540548 | Msa0973830:intron | 30.0% | |
| CATGGTGCAATATTATATGT+CGG | - | chr6_4:6540625-6540644 | None:intergenic | 30.0% | |
| !!! | TTATTGGTTTTATGGGACTT+TGG | - | chr6_4:6540751-6540770 | None:intergenic | 30.0% |
| AGTCCCATAAAACCAATAAA+CGG | + | chr6_4:6540752-6540771 | Msa0973830:intron | 30.0% | |
| !!! | AGACCGTTTATTGGTTTTAT+GGG | - | chr6_4:6540758-6540777 | None:intergenic | 30.0% |
| !!! | TAGACCGTTTATTGGTTTTA+TGG | - | chr6_4:6540759-6540778 | None:intergenic | 30.0% |
| !! | ATGCTTTGAGCTTTTTATGT+AGG | - | chr6_4:6540879-6540898 | None:intergenic | 30.0% |
| !! | GAGTTTGTTGTTTAGATTCA+AGG | + | chr6_4:6540999-6541018 | Msa0973830:intron | 30.0% |
| ATTCAAGGTAAAAGACAACA+AGG | + | chr6_4:6541014-6541033 | Msa0973830:intron | 30.0% | |
| TGTTTCTCAGTTCAATTCTT+CGG | + | chr6_4:6541123-6541142 | Msa0973830:intron | 30.0% | |
| ! | TTGAAACTGCATTTTTCTGA+TGG | - | chr6_4:6541226-6541245 | None:intergenic | 30.0% |
| !!! | ATCTTTTCTGCTGTTTCATA+CGG | + | chr6_4:6541274-6541293 | Msa0973830:intron | 30.0% |
| ! | TATTTCTGCTATTATCTAGC+AGG | + | chr6_4:6541567-6541586 | Msa0973830:intron | 30.0% |
| TTATAATAACGGTGAAGCAT+TGG | + | chr6_4:6539664-6539683 | Msa0973830:CDS | 30.0% | |
| ! | AGAGATTGCCTTATTATCTA+AGG | + | chr6_4:6540247-6540266 | Msa0973830:intron | 30.0% |
| ! | GAGATTGCCTTATTATCTAA+GGG | + | chr6_4:6540248-6540267 | Msa0973830:intron | 30.0% |
| ATCATGTCCCTTAGATAATA+AGG | - | chr6_4:6540258-6540277 | None:intergenic | 30.0% | |
| ! | TTACTCTAGAAATAACGGTT+AGG | + | chr6_4:6540282-6540301 | Msa0973830:intron | 30.0% |
| TCTGAGTTTATGTCATTGAA+AGG | + | chr6_4:6540325-6540344 | Msa0973830:intron | 30.0% | |
| GGATTATAAAAGGAACAAGA+AGG | - | chr6_4:6540355-6540374 | None:intergenic | 30.0% | |
| ! | AGGAGAACATGGATTATAAA+AGG | - | chr6_4:6540365-6540384 | None:intergenic | 30.0% |
| AATGAATGAAAAGGAGAACA+TGG | - | chr6_4:6540376-6540395 | None:intergenic | 30.0% | |
| ACGCAATCATGCTATTAATA+AGG | + | chr6_4:6540529-6540548 | Msa0973830:intron | 30.0% | |
| CATGGTGCAATATTATATGT+CGG | - | chr6_4:6540625-6540644 | None:intergenic | 30.0% | |
| !!! | TTATTGGTTTTATGGGACTT+TGG | - | chr6_4:6540751-6540770 | None:intergenic | 30.0% |
| AGTCCCATAAAACCAATAAA+CGG | + | chr6_4:6540752-6540771 | Msa0973830:intron | 30.0% | |
| !!! | AGACCGTTTATTGGTTTTAT+GGG | - | chr6_4:6540758-6540777 | None:intergenic | 30.0% |
| !!! | TAGACCGTTTATTGGTTTTA+TGG | - | chr6_4:6540759-6540778 | None:intergenic | 30.0% |
| !! | ATGCTTTGAGCTTTTTATGT+AGG | - | chr6_4:6540879-6540898 | None:intergenic | 30.0% |
| !! | GAGTTTGTTGTTTAGATTCA+AGG | + | chr6_4:6540999-6541018 | Msa0973830:intron | 30.0% |
| ATTCAAGGTAAAAGACAACA+AGG | + | chr6_4:6541014-6541033 | Msa0973830:intron | 30.0% | |
| TGTTTCTCAGTTCAATTCTT+CGG | + | chr6_4:6541123-6541142 | Msa0973830:intron | 30.0% | |
| ! | TTGAAACTGCATTTTTCTGA+TGG | - | chr6_4:6541226-6541245 | None:intergenic | 30.0% |
| !!! | ATCTTTTCTGCTGTTTCATA+CGG | + | chr6_4:6541274-6541293 | Msa0973830:intron | 30.0% |
| ! | TATTTCTGCTATTATCTAGC+AGG | + | chr6_4:6541567-6541586 | Msa0973830:intron | 30.0% |
| TTGAAGAATCTGCAAACAAG+TGG | + | chr6_4:6539480-6539499 | Msa0973830:CDS | 35.0% | |
| AGAACAAAACACATTGTCGT+TGG | - | chr6_4:6539527-6539546 | None:intergenic | 35.0% | |
| ! | TTTTCCGACTGATGTTAATC+CGG | - | chr6_4:6539700-6539719 | None:intergenic | 35.0% |
| ATAGTAGTTGGATGAAAAGC+TGG | - | chr6_4:6539723-6539742 | None:intergenic | 35.0% | |
| CCTCTCAATGTAATAGTAGT+TGG | - | chr6_4:6539735-6539754 | None:intergenic | 35.0% | |
| CCAACTACTATTACATTGAG+AGG | + | chr6_4:6539732-6539751 | Msa0973830:CDS | 35.0% | |
| ! | ATTGAGAGGCATAATGTTCT+TGG | + | chr6_4:6539746-6539765 | Msa0973830:CDS | 35.0% |
| TTTCTTGTGGGCGAAATTTA+TGG | + | chr6_4:6539828-6539847 | Msa0973830:CDS | 35.0% | |
| AACAGAAAGAGTTACAAGCA+TGG | - | chr6_4:6539902-6539921 | None:intergenic | 35.0% | |
| ! | AACTCTTTCTGTTTAAGACC+AGG | + | chr6_4:6539909-6539928 | Msa0973830:intron | 35.0% |
| TAAATGTTGCAAGGGAAACA+TGG | - | chr6_4:6539966-6539985 | None:intergenic | 35.0% | |
| ! | ATGTATGAGAGTGATTTGTG+TGG | + | chr6_4:6540427-6540446 | Msa0973830:intron | 35.0% |
| GAAAAAACCTTGTTGCAAAC+AGG | - | chr6_4:6540584-6540603 | None:intergenic | 35.0% | |
| TTTAAATTGCTCCAAGGATG+TGG | - | chr6_4:6540678-6540697 | None:intergenic | 35.0% | |
| GATCTTGTCATTATCCACAA+TGG | - | chr6_4:6540905-6540924 | None:intergenic | 35.0% | |
| GAGAAACAAGTTAGTGACAT+TGG | + | chr6_4:6540925-6540944 | Msa0973830:CDS | 35.0% | |
| TAGTGACATTGGTGAAACAT+CGG | + | chr6_4:6540936-6540955 | Msa0973830:CDS | 35.0% | |
| CTCTTGAAATATGCACTTTG+TGG | + | chr6_4:6541170-6541189 | Msa0973830:intron | 35.0% | |
| TGAAATATGCACTTTGTGGA+TGG | + | chr6_4:6541174-6541193 | Msa0973830:intron | 35.0% | |
| ! | GGTGTTGTAAGTAATAGTAC+TGG | + | chr6_4:6541295-6541314 | Msa0973830:intron | 35.0% |
| AAACTTCAGTTGTGCTTCTA+TGG | - | chr6_4:6541323-6541342 | None:intergenic | 35.0% | |
| AATGTTCGCCACAAAGAATT+AGG | + | chr6_4:6541502-6541521 | Msa0973830:intron | 35.0% | |
| AACTTGATCAGTAAGTAAGC+TGG | - | chr6_4:6541611-6541630 | None:intergenic | 35.0% | |
| TTGAAGAATCTGCAAACAAG+TGG | + | chr6_4:6539480-6539499 | Msa0973830:CDS | 35.0% | |
| AGAACAAAACACATTGTCGT+TGG | - | chr6_4:6539527-6539546 | None:intergenic | 35.0% | |
| ! | TTTTCCGACTGATGTTAATC+CGG | - | chr6_4:6539700-6539719 | None:intergenic | 35.0% |
| ATAGTAGTTGGATGAAAAGC+TGG | - | chr6_4:6539723-6539742 | None:intergenic | 35.0% | |
| CCTCTCAATGTAATAGTAGT+TGG | - | chr6_4:6539735-6539754 | None:intergenic | 35.0% | |
| CCAACTACTATTACATTGAG+AGG | + | chr6_4:6539732-6539751 | Msa0973830:CDS | 35.0% | |
| ! | ATTGAGAGGCATAATGTTCT+TGG | + | chr6_4:6539746-6539765 | Msa0973830:CDS | 35.0% |
| TTTCTTGTGGGCGAAATTTA+TGG | + | chr6_4:6539828-6539847 | Msa0973830:CDS | 35.0% | |
| AACAGAAAGAGTTACAAGCA+TGG | - | chr6_4:6539902-6539921 | None:intergenic | 35.0% | |
| ! | AACTCTTTCTGTTTAAGACC+AGG | + | chr6_4:6539909-6539928 | Msa0973830:intron | 35.0% |
| TAAATGTTGCAAGGGAAACA+TGG | - | chr6_4:6539966-6539985 | None:intergenic | 35.0% | |
| ! | ATGTATGAGAGTGATTTGTG+TGG | + | chr6_4:6540427-6540446 | Msa0973830:intron | 35.0% |
| GAAAAAACCTTGTTGCAAAC+AGG | - | chr6_4:6540584-6540603 | None:intergenic | 35.0% | |
| TTTAAATTGCTCCAAGGATG+TGG | - | chr6_4:6540678-6540697 | None:intergenic | 35.0% | |
| GATCTTGTCATTATCCACAA+TGG | - | chr6_4:6540905-6540924 | None:intergenic | 35.0% | |
| GAGAAACAAGTTAGTGACAT+TGG | + | chr6_4:6540925-6540944 | Msa0973830:CDS | 35.0% | |
| TAGTGACATTGGTGAAACAT+CGG | + | chr6_4:6540936-6540955 | Msa0973830:CDS | 35.0% | |
| CTCTTGAAATATGCACTTTG+TGG | + | chr6_4:6541170-6541189 | Msa0973830:intron | 35.0% | |
| TGAAATATGCACTTTGTGGA+TGG | + | chr6_4:6541174-6541193 | Msa0973830:intron | 35.0% | |
| ! | GGTGTTGTAAGTAATAGTAC+TGG | + | chr6_4:6541295-6541314 | Msa0973830:intron | 35.0% |
| AAACTTCAGTTGTGCTTCTA+TGG | - | chr6_4:6541323-6541342 | None:intergenic | 35.0% | |
| AATGTTCGCCACAAAGAATT+AGG | + | chr6_4:6541502-6541521 | Msa0973830:intron | 35.0% | |
| AACTTGATCAGTAAGTAAGC+TGG | - | chr6_4:6541611-6541630 | None:intergenic | 35.0% | |
| TCTGCAAACAAGTGGAAACT+TGG | + | chr6_4:6539488-6539507 | Msa0973830:CDS | 40.0% | |
| TCGAGTATAACCACTGCATT+GGG | - | chr6_4:6539562-6539581 | None:intergenic | 40.0% | |
| ATCGAGTATAACCACTGCAT+TGG | - | chr6_4:6539563-6539582 | None:intergenic | 40.0% | |
| AATCCCGGATTAACATCAGT+CGG | + | chr6_4:6539693-6539712 | Msa0973830:CDS | 40.0% | |
| TTTCCGACTGATGTTAATCC+GGG | - | chr6_4:6539699-6539718 | None:intergenic | 40.0% | |
| ! | TGATGCATGTTCTTGTTTGC+AGG | + | chr6_4:6539781-6539800 | Msa0973830:intron | 40.0% |
| GAAAGCTAGTCGCATTTCTA+CGG | - | chr6_4:6539812-6539831 | None:intergenic | 40.0% | |
| !! | AAATGCGACTAGCTTTCTTG+TGG | + | chr6_4:6539815-6539834 | Msa0973830:CDS | 40.0% |
| !! | AATGCGACTAGCTTTCTTGT+GGG | + | chr6_4:6539816-6539835 | Msa0973830:CDS | 40.0% |
| GGCGAAATTTATGGAAATCC+AGG | + | chr6_4:6539837-6539856 | Msa0973830:CDS | 40.0% | |
| CAAGGGAAACATGGCTAAAT+GGG | - | chr6_4:6539957-6539976 | None:intergenic | 40.0% | |
| ACCATTAGTCCGTTATCTTC+TGG | + | chr6_4:6539996-6540015 | Msa0973830:intron | 40.0% | |
| AACACCAAGCCAGAAGATAA+CGG | - | chr6_4:6540008-6540027 | None:intergenic | 40.0% | |
| ! | GTTGGAGAAAGACGTGATTT+TGG | + | chr6_4:6540070-6540089 | Msa0973830:intron | 40.0% |
| ATGTAGTCGATCCCACTTAA+TGG | + | chr6_4:6540120-6540139 | Msa0973830:intron | 40.0% | |
| TGTAGTCGATCCCACTTAAT+GGG | + | chr6_4:6540121-6540140 | Msa0973830:intron | 40.0% | |
| ! | CAAGCCTTATCCCATTAAGT+GGG | - | chr6_4:6540134-6540153 | None:intergenic | 40.0% |
| ! | ACAAGCCTTATCCCATTAAG+TGG | - | chr6_4:6540135-6540154 | None:intergenic | 40.0% |
| ! | AGAGTGATTTGTGTGGCAAA+CGG | + | chr6_4:6540434-6540453 | Msa0973830:intron | 40.0% |
| TCTTGTGTAGAGATTGTGAG+CGG | - | chr6_4:6540502-6540521 | None:intergenic | 40.0% | |
| TAGTTGTCCTGTTTGCAACA+AGG | + | chr6_4:6540574-6540593 | Msa0973830:CDS | 40.0% | |
| ! | TACTCTTGGAACCCTTTTCA+TGG | - | chr6_4:6540643-6540662 | None:intergenic | 40.0% |
| GGTTGGAGATTGAATACTCT+TGG | - | chr6_4:6540657-6540676 | None:intergenic | 40.0% | |
| ! | ATACTGGTTAAGTCAATCGC+TGG | - | chr6_4:6540722-6540741 | None:intergenic | 40.0% |
| !!! | TTGGTTTTATGGGACTTTGG+TGG | - | chr6_4:6540748-6540767 | None:intergenic | 40.0% |
| CCTCTTGATAGACCGTTTAT+TGG | - | chr6_4:6540767-6540786 | None:intergenic | 40.0% | |
| CCAATAAACGGTCTATCAAG+AGG | + | chr6_4:6540764-6540783 | Msa0973830:intron | 40.0% | |
| CAAGGTCGTGCAATGATAAT+TGG | + | chr6_4:6541032-6541051 | Msa0973830:intron | 40.0% | |
| AGTTCAATTCTTCGGCTCAA+TGG | + | chr6_4:6541131-6541150 | Msa0973830:intron | 40.0% | |
| ! | CACTTTGTGGATGGAAGTTT+TGG | + | chr6_4:6541183-6541202 | Msa0973830:intron | 40.0% |
| ! | TTATCTAGCAGGCTGTTTCA+TGG | + | chr6_4:6541578-6541597 | Msa0973830:intron | 40.0% |
| ! | TATCTAGCAGGCTGTTTCAT+GGG | + | chr6_4:6541579-6541598 | Msa0973830:intron | 40.0% |
| TCTGCAAACAAGTGGAAACT+TGG | + | chr6_4:6539488-6539507 | Msa0973830:CDS | 40.0% | |
| TCGAGTATAACCACTGCATT+GGG | - | chr6_4:6539562-6539581 | None:intergenic | 40.0% | |
| ATCGAGTATAACCACTGCAT+TGG | - | chr6_4:6539563-6539582 | None:intergenic | 40.0% | |
| AATCCCGGATTAACATCAGT+CGG | + | chr6_4:6539693-6539712 | Msa0973830:CDS | 40.0% | |
| TTTCCGACTGATGTTAATCC+GGG | - | chr6_4:6539699-6539718 | None:intergenic | 40.0% | |
| ! | TGATGCATGTTCTTGTTTGC+AGG | + | chr6_4:6539781-6539800 | Msa0973830:intron | 40.0% |
| GAAAGCTAGTCGCATTTCTA+CGG | - | chr6_4:6539812-6539831 | None:intergenic | 40.0% | |
| !! | AAATGCGACTAGCTTTCTTG+TGG | + | chr6_4:6539815-6539834 | Msa0973830:CDS | 40.0% |
| !! | AATGCGACTAGCTTTCTTGT+GGG | + | chr6_4:6539816-6539835 | Msa0973830:CDS | 40.0% |
| GGCGAAATTTATGGAAATCC+AGG | + | chr6_4:6539837-6539856 | Msa0973830:CDS | 40.0% | |
| CAAGGGAAACATGGCTAAAT+GGG | - | chr6_4:6539957-6539976 | None:intergenic | 40.0% | |
| ACCATTAGTCCGTTATCTTC+TGG | + | chr6_4:6539996-6540015 | Msa0973830:intron | 40.0% | |
| AACACCAAGCCAGAAGATAA+CGG | - | chr6_4:6540008-6540027 | None:intergenic | 40.0% | |
| ! | GTTGGAGAAAGACGTGATTT+TGG | + | chr6_4:6540070-6540089 | Msa0973830:intron | 40.0% |
| ATGTAGTCGATCCCACTTAA+TGG | + | chr6_4:6540120-6540139 | Msa0973830:intron | 40.0% | |
| TGTAGTCGATCCCACTTAAT+GGG | + | chr6_4:6540121-6540140 | Msa0973830:intron | 40.0% | |
| ! | CAAGCCTTATCCCATTAAGT+GGG | - | chr6_4:6540134-6540153 | None:intergenic | 40.0% |
| ! | ACAAGCCTTATCCCATTAAG+TGG | - | chr6_4:6540135-6540154 | None:intergenic | 40.0% |
| ! | AGAGTGATTTGTGTGGCAAA+CGG | + | chr6_4:6540434-6540453 | Msa0973830:intron | 40.0% |
| TCTTGTGTAGAGATTGTGAG+CGG | - | chr6_4:6540502-6540521 | None:intergenic | 40.0% | |
| TAGTTGTCCTGTTTGCAACA+AGG | + | chr6_4:6540574-6540593 | Msa0973830:CDS | 40.0% | |
| ! | TACTCTTGGAACCCTTTTCA+TGG | - | chr6_4:6540643-6540662 | None:intergenic | 40.0% |
| GGTTGGAGATTGAATACTCT+TGG | - | chr6_4:6540657-6540676 | None:intergenic | 40.0% | |
| ! | ATACTGGTTAAGTCAATCGC+TGG | - | chr6_4:6540722-6540741 | None:intergenic | 40.0% |
| !!! | TTGGTTTTATGGGACTTTGG+TGG | - | chr6_4:6540748-6540767 | None:intergenic | 40.0% |
| CCTCTTGATAGACCGTTTAT+TGG | - | chr6_4:6540767-6540786 | None:intergenic | 40.0% | |
| CCAATAAACGGTCTATCAAG+AGG | + | chr6_4:6540764-6540783 | Msa0973830:intron | 40.0% | |
| CAAGGTCGTGCAATGATAAT+TGG | + | chr6_4:6541032-6541051 | Msa0973830:intron | 40.0% | |
| AGTTCAATTCTTCGGCTCAA+TGG | + | chr6_4:6541131-6541150 | Msa0973830:intron | 40.0% | |
| ! | CACTTTGTGGATGGAAGTTT+TGG | + | chr6_4:6541183-6541202 | Msa0973830:intron | 40.0% |
| ! | TTATCTAGCAGGCTGTTTCA+TGG | + | chr6_4:6541578-6541597 | Msa0973830:intron | 40.0% |
| ! | TATCTAGCAGGCTGTTTCAT+GGG | + | chr6_4:6541579-6541598 | Msa0973830:intron | 40.0% |
| AAACACATTGTCGTTGGAGC+AGG | - | chr6_4:6539521-6539540 | None:intergenic | 45.0% | |
| ! | TGCTTTTCATCCCAATGCAG+TGG | + | chr6_4:6539549-6539568 | Msa0973830:CDS | 45.0% |
| !! | AAGCATTGGTCTCTGAATCC+CGG | + | chr6_4:6539678-6539697 | Msa0973830:CDS | 45.0% |
| CTAAATGGGACAATGCTGCA+GGG | - | chr6_4:6539943-6539962 | None:intergenic | 45.0% | |
| GCAAGGGAAACATGGCTAAA+TGG | - | chr6_4:6539958-6539977 | None:intergenic | 45.0% | |
| !! | GCCAGAAGATAACGGACTAA+TGG | - | chr6_4:6540000-6540019 | None:intergenic | 45.0% |
| ! | TAGTCCGTTATCTTCTGGCT+TGG | + | chr6_4:6540001-6540020 | Msa0973830:intron | 45.0% |
| CGATCCCACTTAATGGGATA+AGG | + | chr6_4:6540127-6540146 | Msa0973830:intron | 45.0% | |
| TTCAACTCTGGCAACACACT+AGG | + | chr6_4:6540457-6540476 | Msa0973830:intron | 45.0% | |
| TCAATCTCCAACCACATCCT+TGG | + | chr6_4:6540664-6540683 | Msa0973830:CDS | 45.0% | |
| AATTGCTCCAAGGATGTGGT+TGG | - | chr6_4:6540674-6540693 | None:intergenic | 45.0% | |
| GATATGTCTTGCGCTACTGT+CGG | + | chr6_4:6540835-6540854 | Msa0973830:CDS | 45.0% | |
| ! | GCTCAAAGCATCAACCATTG+TGG | + | chr6_4:6540888-6540907 | Msa0973830:CDS | 45.0% |
| TGTGCTCAATGGAATCAGTG+AGG | + | chr6_4:6541095-6541114 | Msa0973830:intron | 45.0% | |
| AAACACATTGTCGTTGGAGC+AGG | - | chr6_4:6539521-6539540 | None:intergenic | 45.0% | |
| ! | TGCTTTTCATCCCAATGCAG+TGG | + | chr6_4:6539549-6539568 | Msa0973830:CDS | 45.0% |
| !! | AAGCATTGGTCTCTGAATCC+CGG | + | chr6_4:6539678-6539697 | Msa0973830:CDS | 45.0% |
| CTAAATGGGACAATGCTGCA+GGG | - | chr6_4:6539943-6539962 | None:intergenic | 45.0% | |
| GCAAGGGAAACATGGCTAAA+TGG | - | chr6_4:6539958-6539977 | None:intergenic | 45.0% | |
| !! | GCCAGAAGATAACGGACTAA+TGG | - | chr6_4:6540000-6540019 | None:intergenic | 45.0% |
| ! | TAGTCCGTTATCTTCTGGCT+TGG | + | chr6_4:6540001-6540020 | Msa0973830:intron | 45.0% |
| CGATCCCACTTAATGGGATA+AGG | + | chr6_4:6540127-6540146 | Msa0973830:intron | 45.0% | |
| TTCAACTCTGGCAACACACT+AGG | + | chr6_4:6540457-6540476 | Msa0973830:intron | 45.0% | |
| TCAATCTCCAACCACATCCT+TGG | + | chr6_4:6540664-6540683 | Msa0973830:CDS | 45.0% | |
| AATTGCTCCAAGGATGTGGT+TGG | - | chr6_4:6540674-6540693 | None:intergenic | 45.0% | |
| GATATGTCTTGCGCTACTGT+CGG | + | chr6_4:6540835-6540854 | Msa0973830:CDS | 45.0% | |
| ! | GCTCAAAGCATCAACCATTG+TGG | + | chr6_4:6540888-6540907 | Msa0973830:CDS | 45.0% |
| TGTGCTCAATGGAATCAGTG+AGG | + | chr6_4:6541095-6541114 | Msa0973830:intron | 45.0% | |
| CAAGCATGGCATTTGCACCA+GGG | - | chr6_4:6539888-6539907 | None:intergenic | 50.0% | |
| ACAAGCATGGCATTTGCACC+AGG | - | chr6_4:6539889-6539908 | None:intergenic | 50.0% | |
| GCTAAATGGGACAATGCTGC+AGG | - | chr6_4:6539944-6539963 | None:intergenic | 50.0% | |
| TGTGGCAAACGGTTCAACTC+TGG | + | chr6_4:6540445-6540464 | Msa0973830:intron | 50.0% | |
| AACTCTGGCAACACACTAGG+TGG | + | chr6_4:6540460-6540479 | Msa0973830:intron | 50.0% | |
| TGTGTAGAGATTGTGAGCGG+CGG | - | chr6_4:6540499-6540518 | None:intergenic | 50.0% | |
| CTGGTTAAGTCAATCGCTGG+TGG | - | chr6_4:6540719-6540738 | None:intergenic | 50.0% | |
| ! | ACTGTCGGTGGTGATGATCA+TGG | + | chr6_4:6540850-6540869 | Msa0973830:CDS | 50.0% |
| ! | AGCAGGCTGTTTCATGGGAT+TGG | + | chr6_4:6541584-6541603 | Msa0973830:intron | 50.0% |
| CAAGCATGGCATTTGCACCA+GGG | - | chr6_4:6539888-6539907 | None:intergenic | 50.0% | |
| ACAAGCATGGCATTTGCACC+AGG | - | chr6_4:6539889-6539908 | None:intergenic | 50.0% | |
| GCTAAATGGGACAATGCTGC+AGG | - | chr6_4:6539944-6539963 | None:intergenic | 50.0% | |
| TGTGGCAAACGGTTCAACTC+TGG | + | chr6_4:6540445-6540464 | Msa0973830:intron | 50.0% | |
| AACTCTGGCAACACACTAGG+TGG | + | chr6_4:6540460-6540479 | Msa0973830:intron | 50.0% | |
| TGTGTAGAGATTGTGAGCGG+CGG | - | chr6_4:6540499-6540518 | None:intergenic | 50.0% | |
| CTGGTTAAGTCAATCGCTGG+TGG | - | chr6_4:6540719-6540738 | None:intergenic | 50.0% | |
| ! | ACTGTCGGTGGTGATGATCA+TGG | + | chr6_4:6540850-6540869 | Msa0973830:CDS | 50.0% |
| ! | AGCAGGCTGTTTCATGGGAT+TGG | + | chr6_4:6541584-6541603 | Msa0973830:intron | 50.0% |
| !! | GGGACTTTGGTGGCGAATAC+TGG | - | chr6_4:6540738-6540757 | None:intergenic | 55.0% |
| ATGTCTTGCGCTACTGTCGG+TGG | + | chr6_4:6540838-6540857 | Msa0973830:CDS | 55.0% | |
| TGGTGAAACATCGGCGACCA+AGG | + | chr6_4:6540945-6540964 | Msa0973830:CDS | 55.0% | |
| !! | GGGACTTTGGTGGCGAATAC+TGG | - | chr6_4:6540738-6540757 | None:intergenic | 55.0% |
| ATGTCTTGCGCTACTGTCGG+TGG | + | chr6_4:6540838-6540857 | Msa0973830:CDS | 55.0% | |
| TGGTGAAACATCGGCGACCA+AGG | + | chr6_4:6540945-6540964 | Msa0973830:CDS | 55.0% | |
| CCAGGCCCGCTTCAGTTTGA+CGG | + | chr6_4:6539855-6539874 | Msa0973830:CDS | 60.0% | |
| CAGGGCCGTCAAACTGAAGC+GGG | - | chr6_4:6539863-6539882 | None:intergenic | 60.0% | |
| CCAGGGCCGTCAAACTGAAG+CGG | - | chr6_4:6539864-6539883 | None:intergenic | 60.0% | |
| GGCATTTGCACCAGGGTCCA+GGG | - | chr6_4:6539881-6539900 | None:intergenic | 60.0% | |
| TGGCATTTGCACCAGGGTCC+AGG | - | chr6_4:6539882-6539901 | None:intergenic | 60.0% | |
| TGCTGCAGGGCATGTAGTCC+TGG | - | chr6_4:6539930-6539949 | None:intergenic | 60.0% | |
| TGAGCGGCGGTGAGATGTTG+TGG | - | chr6_4:6540486-6540505 | None:intergenic | 60.0% | |
| CCAGGCCCGCTTCAGTTTGA+CGG | + | chr6_4:6539855-6539874 | Msa0973830:CDS | 60.0% | |
| CAGGGCCGTCAAACTGAAGC+GGG | - | chr6_4:6539863-6539882 | None:intergenic | 60.0% | |
| CCAGGGCCGTCAAACTGAAG+CGG | - | chr6_4:6539864-6539883 | None:intergenic | 60.0% | |
| GGCATTTGCACCAGGGTCCA+GGG | - | chr6_4:6539881-6539900 | None:intergenic | 60.0% | |
| TGGCATTTGCACCAGGGTCC+AGG | - | chr6_4:6539882-6539901 | None:intergenic | 60.0% | |
| TGCTGCAGGGCATGTAGTCC+TGG | - | chr6_4:6539930-6539949 | None:intergenic | 60.0% | |
| TGAGCGGCGGTGAGATGTTG+TGG | - | chr6_4:6540486-6540505 | None:intergenic | 60.0% | |
| CCGTCAAACTGAAGCGGGCC+TGG | - | chr6_4:6539858-6539877 | None:intergenic | 65.0% | |
| CCGCTTCAGTTTGACGGCCC+TGG | + | chr6_4:6539861-6539880 | Msa0973830:CDS | 65.0% | |
| AGTTTGACGGCCCTGGACCC+TGG | + | chr6_4:6539868-6539887 | Msa0973830:CDS | 65.0% | |
| CCGTCAAACTGAAGCGGGCC+TGG | - | chr6_4:6539858-6539877 | None:intergenic | 65.0% | |
| CCGCTTCAGTTTGACGGCCC+TGG | + | chr6_4:6539861-6539880 | Msa0973830:CDS | 65.0% | |
| AGTTTGACGGCCCTGGACCC+TGG | + | chr6_4:6539868-6539887 | Msa0973830:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 6539459 | 6541639 | 6539459 | ID=Msa0973830;Name=Msa0973830 |
| chr6_4 | mRNA | 6539459 | 6541639 | 6539459 | ID=Msa0973830-mRNA-1;Parent=Msa0973830;Name=Msa0973830-mRNA-1;_AED=0.30;_eAED=0.42;_QI=0|0|0|1|0.2|0.16|6|0|216 |
| chr6_4 | exon | 6539459 | 6539570 | 6539459 | ID=Msa0973830-mRNA-1:exon:2636;Parent=Msa0973830-mRNA-1 |
| chr6_4 | exon | 6539663 | 6539767 | 6539663 | ID=Msa0973830-mRNA-1:exon:2637;Parent=Msa0973830-mRNA-1 |
| chr6_4 | exon | 6539803 | 6539906 | 6539803 | ID=Msa0973830-mRNA-1:exon:2638;Parent=Msa0973830-mRNA-1 |
| chr6_4 | exon | 6540569 | 6540703 | 6540569 | ID=Msa0973830-mRNA-1:exon:2639;Parent=Msa0973830-mRNA-1 |
| chr6_4 | exon | 6540826 | 6540966 | 6540826 | ID=Msa0973830-mRNA-1:exon:2640;Parent=Msa0973830-mRNA-1 |
| chr6_4 | exon | 6541589 | 6541639 | 6541589 | ID=Msa0973830-mRNA-1:exon:2641;Parent=Msa0973830-mRNA-1 |
| chr6_4 | CDS | 6539459 | 6539570 | 6539459 | ID=Msa0973830-mRNA-1:cds;Parent=Msa0973830-mRNA-1 |
| chr6_4 | CDS | 6539663 | 6539767 | 6539663 | ID=Msa0973830-mRNA-1:cds;Parent=Msa0973830-mRNA-1 |
| chr6_4 | CDS | 6539803 | 6539906 | 6539803 | ID=Msa0973830-mRNA-1:cds;Parent=Msa0973830-mRNA-1 |
| chr6_4 | CDS | 6540569 | 6540703 | 6540569 | ID=Msa0973830-mRNA-1:cds;Parent=Msa0973830-mRNA-1 |
| chr6_4 | CDS | 6540826 | 6540966 | 6540826 | ID=Msa0973830-mRNA-1:cds;Parent=Msa0973830-mRNA-1 |
| chr6_4 | CDS | 6541589 | 6541639 | 6541589 | ID=Msa0973830-mRNA-1:cds;Parent=Msa0973830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
