Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974030 | XP_039685680.1 | 84.856 | 799 | 101 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974030 | sp|Q9SZL8|FRS5_ARATH | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.53e-69 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974030 | D3YBB9 | 76.456 | 807 | 173 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1283 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0974030 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974030 | MtrunA17_Chr3g0088371 | 83.152 | 184 | 28 | 1 | 618 | 798 | 1 | 184 | 8.76e-103 | 315 |
| Msa0974030 | MtrunA17_Chr2g0324011 | 30.709 | 635 | 364 | 12 | 36 | 665 | 8 | 571 | 3.05e-101 | 325 |
| Msa0974030 | MtrunA17_Chr3g0082121 | 31.693 | 691 | 384 | 17 | 41 | 727 | 49 | 655 | 1.43e-100 | 326 |
| Msa0974030 | MtrunA17_Chr1g0202341 | 29.606 | 635 | 366 | 17 | 34 | 662 | 50 | 609 | 6.25e-80 | 271 |
| Msa0974030 | MtrunA17_Chr8g0363841 | 28.776 | 629 | 375 | 13 | 40 | 665 | 22 | 580 | 5.12e-75 | 257 |
| Msa0974030 | MtrunA17_Chr1g0203721 | 26.026 | 780 | 452 | 20 | 1 | 739 | 16 | 711 | 5.73e-73 | 256 |
| Msa0974030 | MtrunA17_Chr2g0296781 | 27.688 | 679 | 405 | 20 | 39 | 708 | 1 | 602 | 1.71e-68 | 240 |
| Msa0974030 | MtrunA17_Chr5g0448761 | 25.318 | 707 | 449 | 14 | 31 | 728 | 56 | 692 | 2.00e-68 | 241 |
| Msa0974030 | MtrunA17_Chr6g0458391 | 26.984 | 630 | 357 | 15 | 41 | 662 | 231 | 765 | 1.99e-65 | 233 |
| Msa0974030 | MtrunA17_Chr6g0477261 | 29.412 | 527 | 314 | 14 | 180 | 699 | 7 | 482 | 5.96e-65 | 229 |
| Msa0974030 | MtrunA17_Chr1g0164591 | 35.312 | 320 | 192 | 4 | 131 | 448 | 1 | 307 | 9.32e-63 | 214 |
| Msa0974030 | MtrunA17_Chr2g0287651 | 25.755 | 629 | 387 | 13 | 39 | 662 | 79 | 632 | 1.05e-60 | 221 |
| Msa0974030 | MtrunA17_Chr5g0441581 | 24.967 | 757 | 460 | 21 | 32 | 773 | 26 | 689 | 3.46e-59 | 214 |
| Msa0974030 | MtrunA17_Chr5g0440451 | 24.294 | 708 | 429 | 16 | 34 | 721 | 42 | 662 | 1.06e-55 | 207 |
| Msa0974030 | MtrunA17_Chr1g0172971 | 82.051 | 117 | 20 | 1 | 1 | 116 | 1 | 117 | 4.01e-54 | 196 |
| Msa0974030 | MtrunA17_Chr1g0207551 | 24.821 | 697 | 430 | 17 | 31 | 718 | 30 | 641 | 4.09e-54 | 201 |
| Msa0974030 | MtrunA17_Chr7g0258861 | 35.948 | 306 | 172 | 6 | 36 | 336 | 8 | 294 | 4.69e-54 | 189 |
| Msa0974030 | MtrunA17_Chr2g0329031 | 25.776 | 644 | 382 | 18 | 23 | 658 | 2 | 557 | 1.65e-53 | 198 |
| Msa0974030 | MtrunA17_Chr1g0198761 | 27.147 | 652 | 379 | 19 | 26 | 660 | 38 | 610 | 4.72e-53 | 197 |
| Msa0974030 | MtrunA17_Chr1g0196541 | 24.880 | 627 | 397 | 16 | 39 | 662 | 1 | 556 | 2.73e-52 | 194 |
| Msa0974030 | MtrunA17_Chr3g0118611 | 27.634 | 503 | 304 | 10 | 221 | 719 | 111 | 557 | 3.04e-52 | 195 |
| Msa0974030 | MtrunA17_Chr3g0080351 | 23.724 | 725 | 449 | 15 | 34 | 752 | 75 | 701 | 1.13e-48 | 185 |
| Msa0974030 | MtrunA17_Chr2g0287061 | 24.066 | 669 | 377 | 19 | 41 | 694 | 189 | 741 | 5.12e-48 | 182 |
| Msa0974030 | MtrunA17_Chr2g0290391 | 26.012 | 642 | 372 | 19 | 38 | 660 | 54 | 611 | 2.58e-47 | 179 |
| Msa0974030 | MtrunA17_Chr1g0203051 | 22.373 | 590 | 389 | 8 | 50 | 637 | 94 | 616 | 8.43e-47 | 177 |
| Msa0974030 | MtrunA17_Chr2g0276841 | 25.984 | 635 | 374 | 21 | 49 | 669 | 84 | 636 | 3.91e-45 | 173 |
| Msa0974030 | MtrunA17_Chr5g0448511 | 25.664 | 452 | 282 | 10 | 216 | 665 | 1 | 400 | 4.04e-44 | 167 |
| Msa0974030 | MtrunA17_Chr5g0431001 | 28.160 | 451 | 279 | 12 | 40 | 473 | 66 | 488 | 2.44e-42 | 161 |
| Msa0974030 | MtrunA17_Chr2g0291591 | 25.956 | 497 | 316 | 13 | 16 | 499 | 44 | 501 | 6.93e-42 | 161 |
| Msa0974030 | MtrunA17_Chr2g0291581 | 23.923 | 627 | 396 | 14 | 38 | 662 | 74 | 621 | 6.71e-41 | 160 |
| Msa0974030 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 188 | 260 | 1 | 73 | 1.35e-40 | 143 |
| Msa0974030 | MtrunA17_Chr2g0294841 | 26.640 | 503 | 316 | 15 | 3 | 482 | 7 | 479 | 1.73e-35 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974030 | AT4G38180.1 | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.55e-70 | 248 |
| Msa0974030 | AT4G15090.1 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
| Msa0974030 | AT4G15090.5 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
| Msa0974030 | AT4G15090.3 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
| Msa0974030 | AT4G15090.2 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
| Msa0974030 | AT4G15090.4 | 25.000 | 696 | 435 | 15 | 50 | 741 | 66 | 678 | 2.07e-59 | 217 |
| Msa0974030 | AT2G27110.2 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.09e-53 | 200 |
| Msa0974030 | AT2G27110.1 | 25.070 | 714 | 423 | 19 | 10 | 719 | 29 | 634 | 1.09e-53 | 200 |
| Msa0974030 | AT2G27110.3 | 27.308 | 509 | 313 | 11 | 213 | 719 | 36 | 489 | 4.79e-53 | 197 |
| Msa0974030 | AT3G06250.2 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 5.24e-52 | 194 |
| Msa0974030 | AT3G06250.1 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 5.24e-52 | 194 |
| Msa0974030 | AT3G06250.3 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 5.24e-52 | 194 |
| Msa0974030 | AT1G76320.3 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 4.74e-50 | 187 |
| Msa0974030 | AT1G76320.2 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.19e-49 | 187 |
| Msa0974030 | AT1G76320.1 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.52e-49 | 187 |
| Msa0974030 | AT1G76320.4 | 24.852 | 676 | 412 | 19 | 50 | 719 | 12 | 597 | 1.52e-49 | 187 |
| Msa0974030 | AT3G22170.2 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.37e-47 | 182 |
| Msa0974030 | AT3G22170.1 | 22.466 | 730 | 449 | 17 | 34 | 753 | 69 | 691 | 1.37e-47 | 182 |
| Msa0974030 | AT5G18960.2 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.75e-46 | 178 |
| Msa0974030 | AT5G18960.1 | 24.730 | 647 | 359 | 18 | 24 | 661 | 200 | 727 | 2.75e-46 | 178 |
| Msa0974030 | AT4G38170.1 | 24.532 | 481 | 295 | 13 | 235 | 703 | 24 | 448 | 8.24e-44 | 167 |
| Msa0974030 | AT1G10240.2 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 8.82e-42 | 163 |
| Msa0974030 | AT1G10240.1 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 8.82e-42 | 163 |
| Msa0974030 | AT5G28530.1 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 1.31e-41 | 162 |
| Msa0974030 | AT5G28530.3 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.95e-41 | 160 |
| Msa0974030 | AT5G28530.2 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 7.95e-41 | 160 |
| Msa0974030 | AT2G32250.5 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.12e-39 | 157 |
| Msa0974030 | AT2G32250.2 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.78e-39 | 157 |
| Msa0974030 | AT2G32250.4 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 1.78e-39 | 157 |
| Msa0974030 | AT2G32250.6 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.54e-39 | 157 |
| Msa0974030 | AT2G32250.1 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.54e-39 | 157 |
| Msa0974030 | AT2G32250.3 | 23.624 | 745 | 432 | 20 | 4 | 743 | 10 | 622 | 2.54e-39 | 157 |
| Msa0974030 | AT2G32250.7 | 23.588 | 708 | 407 | 18 | 41 | 743 | 3 | 581 | 1.14e-38 | 154 |
| Msa0974030 | AT2G32250.8 | 23.605 | 699 | 400 | 18 | 50 | 743 | 12 | 581 | 1.18e-38 | 154 |
| Msa0974030 | AT1G80010.1 | 23.556 | 658 | 370 | 24 | 41 | 662 | 101 | 661 | 3.74e-36 | 146 |
| Msa0974030 | AT1G52520.1 | 22.080 | 625 | 407 | 16 | 41 | 662 | 91 | 638 | 2.37e-33 | 137 |
| Msa0974030 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 2.35e-27 | 119 |
| Msa0974030 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 2.15e-12 | 71.2 |
| Msa0974030 | AT4G19990.7 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 2.57e-27 | 119 |
| Msa0974030 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.49e-12 | 71.2 |
| Msa0974030 | AT4G19990.5 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.63e-27 | 119 |
| Msa0974030 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.44e-12 | 71.2 |
| Msa0974030 | AT4G19990.3 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.17e-27 | 119 |
| Msa0974030 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.49e-12 | 71.2 |
| Msa0974030 | AT4G19990.4 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.17e-27 | 119 |
| Msa0974030 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.49e-12 | 71.2 |
| Msa0974030 | AT4G19990.6 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.34e-27 | 119 |
| Msa0974030 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.21e-12 | 71.2 |
| Msa0974030 | AT4G19990.2 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.34e-27 | 119 |
| Msa0974030 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.21e-12 | 71.2 |
| Msa0974030 | AT5G28530.4 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 1.39e-22 | 103 |
| Msa0974030 | AT5G28530.5 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 9.74e-22 | 100 |
Find 124 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 6_4:-6907734 | Msa0974030:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 6_4:-6908043 | Msa0974030:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 6_4:+6906908 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 6_4:-6907776 | Msa0974030:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 6_4:-6908827 | Msa0974030:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 6_4:-6908324 | Msa0974030:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 6_4:-6908291 | Msa0974030:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 6_4:+6908197 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 6_4:+6906914 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 6_4:-6908002 | Msa0974030:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 6_4:-6907062 | Msa0974030:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 6_4:+6908179 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 6_4:+6908777 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 6_4:-6906665 | Msa0974030:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 6_4:+6906846 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 6_4:-6907479 | Msa0974030:CDS |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 6_4:-6907902 | Msa0974030:CDS |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 6_4:-6907070 | Msa0974030:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 6_4:-6908770 | Msa0974030:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 6_4:-6908778 | Msa0974030:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 6_4:-6909690 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 6_4:-6907903 | Msa0974030:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 6_4:+6907186 | None:intergenic |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 6_4:+6909307 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 6_4:-6906922 | Msa0974030:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 6_4:+6906932 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 6_4:-6907602 | Msa0974030:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 6_4:-6907037 | Msa0974030:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 6_4:-6909536 | Msa0974030:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 6_4:-6907354 | Msa0974030:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 6_4:+6907431 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 6_4:-6909465 | Msa0974030:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 6_4:+6907430 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 6_4:-6909130 | Msa0974030:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 6_4:-6909248 | Msa0974030:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 6_4:+6908186 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 6_4:-6909265 | Msa0974030:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 6_4:+6907253 | None:intergenic |
| CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 6_4:-6909382 | Msa0974030:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 6_4:-6909100 | Msa0974030:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 6_4:-6909611 | Msa0974030:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 6_4:-6908112 | Msa0974030:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 6_4:-6907948 | Msa0974030:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 6_4:-6907353 | Msa0974030:CDS |
| AATTCTTGATTGTTATGCAT+TGG | 0.467731 | 6_4:-6906684 | Msa0974030:three_prime_UTR |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 6_4:-6909416 | Msa0974030:CDS |
| GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 6_4:-6907396 | Msa0974030:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 6_4:-6909055 | Msa0974030:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 6_4:+6907600 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 6_4:+6909271 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 6_4:-6909478 | Msa0974030:CDS |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 6_4:-6906961 | Msa0974030:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 6_4:-6908987 | Msa0974030:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 6_4:+6909160 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 6_4:-6909422 | Msa0974030:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 6_4:-6907586 | Msa0974030:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 6_4:+6908311 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 6_4:-6908001 | Msa0974030:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 6_4:-6908974 | Msa0974030:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 6_4:-6907762 | Msa0974030:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 6_4:+6907682 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 6_4:-6909068 | Msa0974030:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 6_4:+6908882 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 6_4:-6906962 | Msa0974030:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 6_4:+6909172 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 6_4:-6907915 | Msa0974030:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 6_4:-6907417 | Msa0974030:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 6_4:+6909016 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 6_4:-6907743 | Msa0974030:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 6_4:-6907897 | Msa0974030:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 6_4:-6909212 | Msa0974030:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 6_4:+6907437 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 6_4:+6907794 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 6_4:-6909371 | Msa0974030:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 6_4:-6907416 | Msa0974030:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 6_4:+6907605 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 6_4:-6906856 | Msa0974030:CDS |
| AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 6_4:-6907397 | Msa0974030:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 6_4:+6907799 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 6_4:-6907585 | Msa0974030:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 6_4:-6909370 | Msa0974030:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 6_4:-6909546 | Msa0974030:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 6_4:+6908166 | None:intergenic |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | 6_4:-6907196 | Msa0974030:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 6_4:-6908920 | Msa0974030:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 6_4:-6909587 | Msa0974030:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 6_4:-6909052 | Msa0974030:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 6_4:-6907110 | Msa0974030:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 6_4:-6909213 | Msa0974030:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 6_4:+6907681 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 6_4:+6906950 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 6_4:-6906831 | Msa0974030:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 6_4:+6907660 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 6_4:-6909622 | Msa0974030:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 6_4:-6909061 | Msa0974030:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 6_4:-6907069 | Msa0974030:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 6_4:-6908180 | Msa0974030:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 6_4:-6907074 | Msa0974030:CDS |
| GAGGCTTTAACAAATTAAGC+GGG | 0.594536 | 6_4:-6906812 | Msa0974030:exon |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 6_4:-6907447 | Msa0974030:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 6_4:+6906994 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 6_4:-6908981 | Msa0974030:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 6_4:-6909067 | Msa0974030:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 6_4:-6908978 | Msa0974030:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 6_4:-6907107 | Msa0974030:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 6_4:-6907684 | Msa0974030:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 6_4:-6907599 | Msa0974030:CDS |
| TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 6_4:+6907162 | None:intergenic |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 6_4:+6909322 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 6_4:+6907946 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 6_4:-6909047 | Msa0974030:CDS |
| TGAGGCTTTAACAAATTAAG+CGG | 0.628414 | 6_4:-6906813 | Msa0974030:exon |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 6_4:+6907432 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 6_4:-6908111 | Msa0974030:CDS |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 6_4:+6907189 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 6_4:-6907761 | Msa0974030:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 6_4:+6907211 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 6_4:+6907640 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 6_4:-6907085 | Msa0974030:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 6_4:+6907335 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 6_4:-6908184 | Msa0974030:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 6_4:-6907352 | Msa0974030:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 6_4:-6907501 | Msa0974030:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 6_4:-6907500 | Msa0974030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr6_4:6909559-6909578 | Msa0974030:CDS | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr6_4:6906863-6906882 | Msa0974030:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr6_4:6906919-6906938 | Msa0974030:CDS | 20.0% |
| !! | ATGTCTATAAGATATATAAG+TGG | - | chr6_4:6907128-6907147 | Msa0974030:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | - | chr6_4:6907129-6907148 | Msa0974030:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr6_4:6907718-6907737 | Msa0974030:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr6_4:6907746-6907765 | Msa0974030:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr6_4:6908368-6908387 | Msa0974030:intron | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr6_4:6906754-6906773 | Msa0974030:three_prime_UTR | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | - | chr6_4:6906795-6906814 | Msa0974030:three_prime_UTR | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr6_4:6906915-6906934 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr6_4:6906925-6906944 | Msa0974030:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr6_4:6907241-6907260 | Msa0974030:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr6_4:6907563-6907582 | Msa0974030:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr6_4:6907589-6907608 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr6_4:6907636-6907655 | Msa0974030:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr6_4:6907738-6907757 | Msa0974030:CDS | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr6_4:6907745-6907764 | Msa0974030:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr6_4:6907994-6908013 | Msa0974030:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr6_4:6908206-6908225 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr6_4:6908298-6908317 | Msa0974030:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr6_4:6908372-6908391 | Msa0974030:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr6_4:6908565-6908584 | Msa0974030:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr6_4:6908704-6908723 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr6_4:6908739-6908758 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr6_4:6908739-6908758 | Msa0974030:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr6_4:6908840-6908859 | Msa0974030:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr6_4:6908841-6908860 | Msa0974030:CDS | 25.0% |
| ! | TGATGCTTTAACTAAAAAAG+CGG | - | chr6_4:6909590-6909609 | Msa0974030:CDS | 25.0% |
| ! | AATTCTTGATTGTTATGCAT+TGG | - | chr6_4:6909657-6909676 | Msa0974030:five_prime_UTR | 25.0% |
| ATATTAACTTCATCTGAGAG+TGG | - | chr6_4:6906719-6906738 | Msa0974030:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr6_4:6906805-6906824 | Msa0974030:exon | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | - | chr6_4:6906959-6906978 | Msa0974030:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr6_4:6906970-6906989 | Msa0974030:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr6_4:6906971-6906990 | Msa0974030:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr6_4:6907060-6907079 | Msa0974030:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr6_4:6907093-6907112 | Msa0974030:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr6_4:6907172-6907191 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | chr6_4:6907274-6907293 | Msa0974030:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr6_4:6907318-6907337 | Msa0974030:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr6_4:6907328-6907347 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr6_4:6907442-6907461 | None:intergenic | 30.0% | |
| !!! | AAGACATAGCCAGTATTTTT+TGG | - | chr6_4:6907476-6907495 | Msa0974030:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | - | chr6_4:6907477-6907496 | Msa0974030:CDS | 30.0% |
| CAACAAGATTATGCTCTATT+TGG | - | chr6_4:6907514-6907533 | Msa0974030:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr6_4:6907567-6907586 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr6_4:6907571-6907590 | Msa0974030:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr6_4:6907650-6907669 | Msa0974030:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr6_4:6907675-6907694 | Msa0974030:CDS | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr6_4:6907809-6907828 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr6_4:6907953-6907972 | Msa0974030:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr6_4:6908033-6908052 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr6_4:6908147-6908166 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr6_4:6908197-6908216 | Msa0974030:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr6_4:6908209-6908228 | Msa0974030:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr6_4:6908254-6908273 | Msa0974030:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr6_4:6908339-6908358 | Msa0974030:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr6_4:6908340-6908359 | Msa0974030:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr6_4:6908550-6908569 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr6_4:6908684-6908703 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr6_4:6908744-6908763 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr6_4:6908742-6908761 | Msa0974030:intron | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr6_4:6908799-6908818 | Msa0974030:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr6_4:6908912-6908931 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr6_4:6908913-6908932 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr6_4:6908924-6908943 | Msa0974030:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr6_4:6908925-6908944 | Msa0974030:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr6_4:6909021-6909040 | Msa0974030:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr6_4:6909024-6909043 | Msa0974030:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr6_4:6909089-6909108 | Msa0974030:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr6_4:6909256-6909275 | Msa0974030:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr6_4:6909304-6909323 | Msa0974030:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr6_4:6909412-6909431 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr6_4:6909419-6909438 | Msa0974030:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr6_4:6909430-6909449 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAAATTAAG+CGG | - | chr6_4:6909528-6909547 | Msa0974030:CDS | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | - | chr6_4:6906691-6906710 | Msa0974030:three_prime_UTR | 35.0% |
| ATAACACTGGATTCTCTGTT+AGG | - | chr6_4:6906876-6906895 | Msa0974030:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr6_4:6906996-6907015 | Msa0974030:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr6_4:6907037-6907056 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr6_4:6907054-6907073 | Msa0974030:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr6_4:6907059-6907078 | Msa0974030:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr6_4:6907211-6907230 | Msa0974030:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr6_4:6907273-6907292 | Msa0974030:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr6_4:6907354-6907373 | Msa0974030:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr6_4:6907656-6907675 | Msa0974030:CDS | 35.0% |
| CATAAATTCCAAGGCAAGAT+AGG | + | chr6_4:6907776-6907795 | None:intergenic | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | + | chr6_4:6907785-6907804 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr6_4:6908050-6908069 | Msa0974030:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr6_4:6908093-6908112 | Msa0974030:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr6_4:6908222-6908241 | Msa0974030:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr6_4:6908382-6908401 | Msa0974030:intron | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr6_4:6908426-6908445 | Msa0974030:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr6_4:6908439-6908458 | Msa0974030:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr6_4:6908509-6908528 | Msa0974030:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr6_4:6908579-6908598 | Msa0974030:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr6_4:6908580-6908599 | Msa0974030:intron | 35.0% | |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr6_4:6908862-6908881 | Msa0974030:CDS | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | + | chr6_4:6908914-6908933 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr6_4:6909031-6909050 | Msa0974030:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr6_4:6909091-6909110 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr6_4:6909092-6909111 | Msa0974030:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr6_4:6909358-6909377 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr6_4:6909485-6909504 | Msa0974030:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr6_4:6909510-6909529 | Msa0974030:CDS | 35.0% | |
| ! | GAGGCTTTAACAAATTAAGC+GGG | - | chr6_4:6909529-6909548 | Msa0974030:CDS | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr6_4:6906730-6906749 | Msa0974030:three_prime_UTR | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr6_4:6907010-6907029 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr6_4:6907280-6907299 | Msa0974030:CDS | 40.0% |
| TCCATCTGCCCAAAAAATAC+TGG | + | chr6_4:6907488-6907507 | None:intergenic | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | - | chr6_4:6907789-6907808 | Msa0974030:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr6_4:6907899-6907918 | Msa0974030:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr6_4:6907903-6907922 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | chr6_4:6908017-6908036 | Msa0974030:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr6_4:6908158-6908177 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr6_4:6908157-6908176 | Msa0974030:CDS | 40.0% | |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr6_4:6908438-6908457 | Msa0974030:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr6_4:6908545-6908564 | None:intergenic | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr6_4:6908607-6908626 | Msa0974030:intron | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | chr6_4:6908755-6908774 | Msa0974030:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr6_4:6908756-6908775 | Msa0974030:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr6_4:6908894-6908913 | Msa0974030:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr6_4:6908987-6909006 | Msa0974030:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr6_4:6908988-6909007 | Msa0974030:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr6_4:6909034-6909053 | Msa0974030:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | + | chr6_4:6909133-6909152 | None:intergenic | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | - | chr6_4:6909145-6909164 | Msa0974030:CDS | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | + | chr6_4:6909155-6909174 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr6_4:6909158-6909177 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr6_4:6909267-6909286 | Msa0974030:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr6_4:6909350-6909369 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr6_4:6909436-6909455 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr6_4:6909498-6909517 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr6_4:6907022-6907041 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr6_4:6907064-6907083 | Msa0974030:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr6_4:6907073-6907092 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr6_4:6907076-6907095 | Msa0974030:CDS | 45.0% |
| CTCAAGTAGCACAAATGCTC+TGG | + | chr6_4:6907184-6907203 | None:intergenic | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr6_4:6907360-6907379 | Msa0974030:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr6_4:6907363-6907382 | Msa0974030:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr6_4:6907421-6907440 | Msa0974030:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr6_4:6907462-6907481 | None:intergenic | 45.0% | |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | - | chr6_4:6907484-6907503 | Msa0974030:CDS | 45.0% |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr6_4:6908398-6908417 | None:intergenic | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr6_4:6908444-6908463 | Msa0974030:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr6_4:6908461-6908480 | Msa0974030:intron | 45.0% |
| GAGGGATAATCATGCTGAGT+TGG | - | chr6_4:6908598-6908617 | Msa0974030:intron | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr6_4:6908657-6908676 | Msa0974030:intron | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr6_4:6908907-6908926 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr6_4:6908989-6909008 | Msa0974030:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr6_4:6909009-6909028 | None:intergenic | 45.0% | |
| TTGATATCGTTGCGCTTCAG+TGG | + | chr6_4:6909182-6909201 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr6_4:6909279-6909298 | Msa0974030:CDS | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | - | chr6_4:6909380-6909399 | Msa0974030:CDS | 45.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr6_4:6907286-6907305 | Msa0974030:CDS | 50.0% |
| TGGGTGATCCTATCTTGCCT+TGG | - | chr6_4:6907765-6907784 | Msa0974030:CDS | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr6_4:6908161-6908180 | Msa0974030:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr6_4:6908165-6908184 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr6_4:6908229-6908248 | Msa0974030:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr6_4:6908230-6908249 | Msa0974030:CDS | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr6_4:6908393-6908412 | Msa0974030:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr6_4:6908662-6908681 | None:intergenic | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | - | chr6_4:6908944-6908963 | Msa0974030:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | - | chr6_4:6908945-6908964 | Msa0974030:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr6_4:6909231-6909250 | Msa0974030:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr6_4:6909272-6909291 | Msa0974030:CDS | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | - | chr6_4:6909379-6909398 | Msa0974030:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr6_4:6909394-6909413 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr6_4:6907289-6907308 | Msa0974030:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr6_4:6907367-6907386 | Msa0974030:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr6_4:6908178-6908197 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | chr6_4:6908663-6908682 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr6_4:6909271-6909290 | Msa0974030:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr6_4:6909285-6909304 | Msa0974030:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr6_4:6907294-6907313 | Msa0974030:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr6_4:6909234-6909253 | Msa0974030:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 6906665 | 6909698 | 6906665 | ID=Msa0974030;Name=Msa0974030 |
| chr6_4 | mRNA | 6906665 | 6909698 | 6906665 | ID=Msa0974030-mRNA-1;Parent=Msa0974030;Name=Msa0974030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|152|800 |
| chr6_4 | exon | 6906665 | 6908336 | 6906665 | ID=Msa0974030-mRNA-1:exon:2776;Parent=Msa0974030-mRNA-1 |
| chr6_4 | exon | 6908771 | 6909698 | 6908771 | ID=Msa0974030-mRNA-1:exon:2775;Parent=Msa0974030-mRNA-1 |
| chr6_4 | five_prime_UTR | 6909654 | 6909698 | 6909654 | ID=Msa0974030-mRNA-1:five_prime_utr;Parent=Msa0974030-mRNA-1 |
| chr6_4 | CDS | 6908771 | 6909653 | 6908771 | ID=Msa0974030-mRNA-1:cds;Parent=Msa0974030-mRNA-1 |
| chr6_4 | CDS | 6906817 | 6908336 | 6906817 | ID=Msa0974030-mRNA-1:cds;Parent=Msa0974030-mRNA-1 |
| chr6_4 | three_prime_UTR | 6906665 | 6906816 | 6906665 | ID=Msa0974030-mRNA-1:three_prime_utr;Parent=Msa0974030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
