AlfalfaGEDB | Msa0974170

M. sativa cultivar zhongmu-4 / Msa0974170

KEGG: K14400
GO: GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0974170	XP_013450939.1	68.421	513	82	11	15	450	304	813	0.0	626

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0974170	sp\|Q0WPF2\|PCFS4_ARATH	68.627	204	64	0	246	449	586	789	1.10e-97	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0974170	A0A072U797	68.421	513	82	11	15	450	304	813	0.0	626

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TFs/TRs:

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Gene ID	Type	Classification
Msa0974170	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0974170	MtrunA17_Chr6g0452881	68.421	513	82	11	15	450	304	813	0.0	626
Msa0974170	MtrunA17_Chr6g0452891	78.992	238	26	4	216	450	1	217	3.37e-127	367
Msa0974170	MtrunA17_Chr4g0037071	83.060	183	31	0	268	450	1	183	1.01e-101	303
Msa0974170	MtrunA17_Chr4g0037081	55.090	167	31	5	6	130	15	179	6.59e-44	152
Msa0974170	MtrunA17_Chr1g0179281	36.264	182	110	4	273	450	829	1008	2.30e-34	136
Msa0974170	MtrunA17_Chr7g0265781	32.870	216	138	5	239	450	803	1015	1.62e-33	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0974170	AT4G04885.1	68.627	204	64	0	246	449	586	789	1.11e-98	313
Msa0974170	AT1G66500.1	35.988	339	150	16	159	448	66	386	7.83e-50	175
Msa0974170	AT5G43620.1	45.665	173	73	4	285	448	220	380	1.89e-45	163
Msa0974170	AT2G36480.2	33.533	167	102	3	282	448	785	942	3.12e-25	109
Msa0974170	AT2G36480.1	33.533	167	102	3	282	448	785	942	3.12e-25	109

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Find 134 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATGAAGAATTTGT+TGG	0.474608	6_4:-7037279	None:intergenic
AAAGAAAGAAGATGAAGAGT+TGG	0.403383	6_4:+7038570	Msa0974170:CDS
AAAGGAAGAAGATGCTTGCC+AGG	0.480340	6_4:+7037247	None:intergenic
AAAGTGAATTGCGACGCTGC+TGG	0.570896	6_4:-7037843	None:intergenic
AAAGTTGCTGGCGAAACTGG+TGG	0.614136	6_4:-7037567	None:intergenic
AAATTAGAATATCCGACAGT+TGG	0.551878	6_4:-7038031	None:intergenic
AACAGGTCGTGCATTTGGCA+GGG	0.545446	6_4:-7037880	None:intergenic
AAGAGTTGTTTCCGATTCTT+TGG	0.325210	6_4:-7037923	None:intergenic
AATACTACCACTGTGAGTCA+TGG	0.609522	6_4:+7037684	Msa0974170:CDS
AATATCCGACAGTTGGCTGT+TGG	0.554695	6_4:-7038024	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTAGAATATCCGACAGT+TGG	-	chr6_4:7038034-7038053	None:intergenic	30.0%
GGTACGCAATTAAACAATAA+TGG	-	chr6_4:7038227-7038246	None:intergenic	30.0%
GAATATTTGGATCAAACTCA+AGG	-	chr6_4:7038288-7038307	None:intergenic	30.0%
GTTTGATCCAAATATTCTCA+AGG	+	chr6_4:7038291-7038310	Msa0974170:CDS	30.0%
AAAGAAAGAAGATGAAGAGT+TGG	+	chr6_4:7038570-7038589	Msa0974170:CDS	30.0%
CAAAATACATGTGCATTATG+TGG	+	chr6_4:7038613-7038632	Msa0974170:CDS	30.0%
TCTGCATTTAGCATGAATAA+CGG	-	chr6_4:7038755-7038774	None:intergenic	30.0%
TTCATCACAAAATCTTCAGA+CGG	-	chr6_4:7038790-7038809	None:intergenic	30.0%
AAGTCACCGAAAGAATAATA+TGG	-	chr6_4:7038862-7038881	None:intergenic	30.0%
AAATTAGAATATCCGACAGT+TGG	-	chr6_4:7038034-7038053	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	7037251	7039463	7037251	ID=Msa0974170;Name=Msa0974170
chr6_4	mRNA	7037251	7039463	7037251	ID=Msa0974170-mRNA-1;Parent=Msa0974170;Name=Msa0974170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=7\|0.66\|0.5\|1\|0\|0.25\|4\|299\|450
chr6_4	exon	7037251	7038015	7037251	ID=Msa0974170-mRNA-1:exon:2793;Parent=Msa0974170-mRNA-1
chr6_4	exon	7038024	7038111	7038024	ID=Msa0974170-mRNA-1:exon:2794;Parent=Msa0974170-mRNA-1
chr6_4	exon	7038274	7038816	7038274	ID=Msa0974170-mRNA-1:exon:2795;Parent=Msa0974170-mRNA-1
chr6_4	exon	7039201	7039463	7039201	ID=Msa0974170-mRNA-1:exon:2796;Parent=Msa0974170-mRNA-1
chr6_4	five_prime_UTR	7037251	7037257	7037251	ID=Msa0974170-mRNA-1:five_prime_utr;Parent=Msa0974170-mRNA-1
chr6_4	CDS	7037258	7038015	7037258	ID=Msa0974170-mRNA-1:cds;Parent=Msa0974170-mRNA-1
chr6_4	CDS	7038024	7038111	7038024	ID=Msa0974170-mRNA-1:cds;Parent=Msa0974170-mRNA-1
chr6_4	CDS	7038274	7038780	7038274	ID=Msa0974170-mRNA-1:cds;Parent=Msa0974170-mRNA-1
chr6_4	three_prime_UTR	7038781	7038816	7038781	ID=Msa0974170-mRNA-1:three_prime_utr;Parent=Msa0974170-mRNA-1
chr6_4	three_prime_UTR	7039201	7039463	7039201	ID=Msa0974170-mRNA-1:three_prime_utr;Parent=Msa0974170-mRNA-1

Gene Sequence

>Msa0974170

ATGCTTGCCAGGAGAGAAACACCAACAAATTCTTCATCAGTTTTCTCACACTTTCCGCGAAAAAGATGTTTTGATGAGTTCAGCTATCGCAGCAACGGACAACCTCGTCAAAATCCAATAGCTCTAATTGATGCCTATGGTAGTGCGAAAAGACAAGAAACTTCATGGAAGAATACCGAAGAGGAGGAGTTCAATTGGGAAGATATGATTCCGACACCAGCAACTGGGAAGCCCGCTACTATTGCAGCAAATGCAACTTCTTCAGCGTCAAGGGTGTTTCCTGGTCTCAATTCTAATACTGAGTACCATCCACCAGTTTCGCCAGCAACTTTTGAAACGAGGCCCTCCGTAAATGTGCATGCTCCACGTCCTCCTATATATCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCTAATACTACCACTGTGAGTCATGGTCTAATTAATAGACCTATTCCTGTGCATGAACATGGTGTCGAGAACAATGGTATCAGTAAAAGAAACCTGCATCAGTTGCCTAACTCGCCAACCAGTGGACAAACACCGCCTTTCCAGTTTTTTCCATCTCAGAATCCAGCAGCGTCGCAATTCACTTTGCCAAGACATGCCCCCCTGCCAAATGCACGACCTGTTATGCCACTTCCTATGCCAGACCAAAGAATCGGAAACAACTCTTTCCGACCTTTACCTCCAGCTGGCCATGCTCTACCCCAGATTCTACCTCTACCCCGAATTTTGGTCCTAATCCAACAGCCAACTGTCGGATATTCTAATTTGATTAGTTCACTCGTGGCCCAAGGTGTTATCTCATTAGCTAATCAAGCCCCTGCGGAGGATTTTATTGGCCTTGAGTTTGATCCAAATATTCTCAAGGTTCGTCATAAATCTGTAATCCGTGGCTTATATGGTGATTTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCAAAGATGAGCACAGCAGTCACATGGATTGGCATGTAACTAAGAATCGTATGTCTAAAAACAATAAGCAGAAACCCTCTCGCAAGTGGTTTGTGAGTGAGACGATGTGGCTTAAAGGTGCCGAGGCATTGGGAGTCAAGTCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAAGAAAAGAAAGAAGATGAAGAGTTGGCTGTTCCGGCCGACGAGGACCAAAATACATGTGCATTATGTGGAGAACCTTTTGAGGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGAATAACAACAGGCATAGACAGGTCGCAGTTAGGCCCCGTTATTCATGCTAAATGCAGATCTTAA

Protein sequence

>Msa0974170

MLARRETPTNSSSVFSHFPRKRCFDEFSYRSNGQPRQNPIALIDAYGSAKRQETSWKNTEEEEFNWEDMIPTPATGKPATIAANATSSASRVFPGLNSNTEYHPPVSPATFETRPSVNVHAPRPPIYPSKNPVRNPFESINANTTTVSHGLINRPIPVHEHGVENNGISKRNLHQLPNSPTSGQTPPFQFFPSQNPAASQFTLPRHAPLPNARPVMPLPMPDQRIGNNSFRPLPPAGHALPQILPLPRILVLIQQPTVGYSNLISSLVAQGVISLANQAPAEDFIGLEFDPNILKVRHKSVIRGLYGDFPRQCTTCGLRFKSKDEHSSHMDWHVTKNRMSKNNKQKPSRKWFVSETMWLKGAEALGVKSAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNAPNGITTGIDRSQLGPVIHAKCRS*