AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0974170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0974170 MtrunA17_Chr6g0452881 68.421 513 82 11 15 450 304 813 0.0 626
Msa0974170 MtrunA17_Chr6g0452891 78.992 238 26 4 216 450 1 217 3.37e-127 367
Msa0974170 MtrunA17_Chr4g0037071 83.060 183 31 0 268 450 1 183 1.01e-101 303
Msa0974170 MtrunA17_Chr4g0037081 55.090 167 31 5 6 130 15 179 6.59e-44 152
Msa0974170 MtrunA17_Chr1g0179281 36.264 182 110 4 273 450 829 1008 2.30e-34 136
Msa0974170 MtrunA17_Chr7g0265781 32.870 216 138 5 239 450 803 1015 1.62e-33 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0974170 AT4G04885.1 68.627 204 64 0 246 449 586 789 1.11e-98 313
Msa0974170 AT1G66500.1 35.988 339 150 16 159 448 66 386 7.83e-50 175
Msa0974170 AT5G43620.1 45.665 173 73 4 285 448 220 380 1.89e-45 163
Msa0974170 AT2G36480.2 33.533 167 102 3 282 448 785 942 3.12e-25 109
Msa0974170 AT2G36480.1 33.533 167 102 3 282 448 785 942 3.12e-25 109

Find 134 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACGAACCTTGAGAATATT+TGG 0.171658 6_4:-7038298 None:intergenic
ACTATACATGTACATAATTT+TGG 0.185647 6_4:-7039359 None:intergenic
TCTACCTCTACCCCGAATTT+TGG 0.203185 6_4:+7037986 Msa0974170:CDS
CACATAATGCACATGTATTT+TGG 0.204278 6_4:-7038612 None:intergenic
GTGACTGCTGTGCTCATCTT+TGG 0.248435 6_4:-7038392 None:intergenic
TAGGCATCAATTAGAGCTAT+TGG 0.294593 6_4:-7037372 None:intergenic
ATGCCTGTTGTTATTCCATT+AGG 0.320007 6_4:-7038709 None:intergenic
TGTCCACTGGTTGGCGAGTT+AGG 0.324685 6_4:-7037786 None:intergenic
AAGAGTTGTTTCCGATTCTT+TGG 0.325210 6_4:-7037923 None:intergenic
TCAGCGTCAAGGGTGTTTCC+TGG 0.325987 6_4:+7037519 Msa0974170:CDS
TCAAAAGTTGCTGGCGAAAC+TGG 0.326718 6_4:-7037570 None:intergenic
TCTGTAATCCGTGGCTTATA+TGG 0.327106 6_4:+7038325 Msa0974170:CDS
ACACATTAGGACCAAAATTC+GGG 0.327601 6_4:-7037997 None:intergenic
GACACATTAGGACCAAAATT+CGG 0.332257 6_4:-7037998 None:intergenic
GATTCGAATGGATTCCTAAC+AGG 0.333615 6_4:-7037651 None:intergenic
AGATGAAGAGTTGGCTGTTC+CGG 0.339955 6_4:+7038579 Msa0974170:CDS
TTATTCCATTAGGCGCATTA+AGG 0.358655 6_4:-7038699 None:intergenic
CGAAAAGACAAGAAACTTCA+TGG 0.371299 6_4:+7037403 Msa0974170:CDS
TCGTTGTAACTTACGAGTTC+CGG 0.387658 6_4:+7039266 Msa0974170:three_prime_UTR
CTGCATTTAGCATGAATAAC+GGG 0.394865 6_4:-7038751 None:intergenic
ATGATTCCGACACCAGCAAC+TGG 0.398413 6_4:+7037462 Msa0974170:CDS
GGATTCTTCGATGGATATAT+AGG 0.398722 6_4:-7037630 None:intergenic
GGCATAACAGGTCGTGCATT+TGG 0.398786 6_4:-7037885 None:intergenic
GGCATAGGAAGTGGCATAAC+AGG 0.399981 6_4:-7037897 None:intergenic
AAAGAAAGAAGATGAAGAGT+TGG 0.403383 6_4:+7038570 Msa0974170:CDS
ACGTGGAGCATGCACATTTA+CGG 0.404948 6_4:-7037604 None:intergenic
TTCGGGGTAGAGGTAGAATC+TGG 0.406226 6_4:-7037980 None:intergenic
GTAGCGGGCTTCCCAGTTGC+TGG 0.407709 6_4:-7037474 None:intergenic
CCGAAGAGGAGGAGTTCAAT+TGG 0.408130 6_4:+7037433 Msa0974170:CDS
TAACAGGTCGTGCATTTGGC+AGG 0.413669 6_4:-7037881 None:intergenic
CCATGTTCATGCACAGGAAT+AGG 0.417748 6_4:-7037720 None:intergenic
GCTTAAAGGTGCCGAGGCAT+TGG 0.418088 6_4:+7038501 Msa0974170:CDS
TTGTTTCCGATTCTTTGGTC+TGG 0.419863 6_4:-7037918 None:intergenic
ATTTGTTGGTGTTTCTCTCC+TGG 0.439045 6_4:-7037265 None:intergenic
AGTGAGACGATGTGGCTTAA+AGG 0.439793 6_4:+7038487 Msa0974170:CDS
GTATACCTTAATGCGCCTAA+TGG 0.441302 6_4:+7038694 Msa0974170:CDS
CCAATTGAACTCCTCCTCTT+CGG 0.441961 6_4:-7037433 None:intergenic
GCTCATCTTTGGATTTGAAT+CGG 0.447487 6_4:-7038381 None:intergenic
CTTAAAGGTGCCGAGGCATT+GGG 0.453885 6_4:+7038502 Msa0974170:CDS
GCGAGTTAGGCAACTGATGC+AGG 0.458157 6_4:-7037773 None:intergenic
TTCCGACCTTTACCTCCAGC+TGG 0.468020 6_4:+7037945 Msa0974170:CDS
GCATGGCCAGCTGGAGGTAA+AGG 0.470453 6_4:-7037951 None:intergenic
GCATTTGCTGCAATAGTAGC+GGG 0.472527 6_4:-7037489 None:intergenic
AAAACTGATGAAGAATTTGT+TGG 0.474608 6_4:-7037279 None:intergenic
CTTTGGTCTGGCATAGGAAG+TGG 0.476736 6_4:-7037906 None:intergenic
AAAGGAAGAAGATGCTTGCC+AGG 0.480340 6_4:+7037247 None:intergenic
GGCTTCCCAGTTGCTGGTGT+CGG 0.485684 6_4:-7037468 None:intergenic
GGCATAGACAGGTCGCAGTT+AGG 0.489584 6_4:+7038727 Msa0974170:CDS
GCGCCTAATGGAATAACAAC+AGG 0.497466 6_4:+7038706 Msa0974170:CDS
CCGATTCTTTGGTCTGGCAT+AGG 0.499828 6_4:-7037912 None:intergenic
TGGGGTAGAGCATGGCCAGC+TGG 0.501385 6_4:-7037960 None:intergenic
CGAAGAGGAGGAGTTCAATT+GGG 0.502140 6_4:+7037434 Msa0974170:CDS
TTGGGAGTCAAGTCAGCTCC+AGG 0.502567 6_4:+7038520 Msa0974170:CDS
ACGGAGGAGTGGATGTATAG+AGG 0.502902 6_4:+7038667 Msa0974170:CDS
GGCCTCGTTTCAAAAGTTGC+TGG 0.503897 6_4:-7037579 None:intergenic
AGCTAATGAGATAACACCTT+GGG 0.504555 6_4:-7038071 None:intergenic
TTAGCATTTATTGATTCGAA+TGG 0.504936 6_4:-7037663 None:intergenic
CCACAAGTTGTGCACTGTCT+AGG 0.505428 6_4:-7038355 None:intergenic
TCACTGTAAAACTCCTCAAA+AGG 0.506831 6_4:-7038640 None:intergenic
ATCCATCGAAGAATCCTGTT+AGG 0.507185 6_4:+7037637 Msa0974170:CDS
GCCGATTTAGTTACCTCCGC+AGG 0.507279 6_4:-7038103 None:intergenic
ATAGCTCTAATTGATGCCTA+TGG 0.514260 6_4:+7037375 Msa0974170:CDS
TTCATCACAAAATCTTCAGA+CGG 0.526226 6_4:-7038787 None:intergenic
AGGACCAAAATTCGGGGTAG+AGG 0.526935 6_4:-7037990 None:intergenic
AGCACAGCAGTCACATGGAT+TGG 0.529243 6_4:+7038401 Msa0974170:CDS
CAAAATACATGTGCATTATG+TGG 0.529245 6_4:+7038613 Msa0974170:CDS
TGCAACTTCTTCAGCGTCAA+GGG 0.532463 6_4:+7037509 Msa0974170:CDS
ACAGGTCGTGCATTTGGCAG+GGG 0.537469 6_4:-7037879 None:intergenic
CCTAGACAGTGCACAACTTG+TGG 0.539415 6_4:+7038355 Msa0974170:CDS
GGCGGTGTTTGTCCACTGGT+TGG 0.543540 6_4:-7037795 None:intergenic
AACAGGTCGTGCATTTGGCA+GGG 0.545446 6_4:-7037880 None:intergenic
TCATCACAAAATCTTCAGAC+GGG 0.546560 6_4:-7038786 None:intergenic
GAAAGGCGGTGTTTGTCCAC+TGG 0.548147 6_4:-7037799 None:intergenic
GAATAACAACAGGCATAGAC+AGG 0.548628 6_4:+7038716 Msa0974170:CDS
AAATTAGAATATCCGACAGT+TGG 0.551878 6_4:-7038031 None:intergenic
AGCAGAAACCCTCTCGCAAG+TGG 0.553269 6_4:+7038458 Msa0974170:CDS
AATATCCGACAGTTGGCTGT+TGG 0.554695 6_4:-7038024 None:intergenic
TCTGCATTTAGCATGAATAA+CGG 0.555648 6_4:-7038752 None:intergenic
CCTATGCCAGACCAAAGAAT+CGG 0.556854 6_4:+7037912 Msa0974170:CDS
ATTAGTTCACTCGTGGCCCA+AGG 0.558294 6_4:+7038055 Msa0974170:CDS
CAGGTCGTGCATTTGGCAGG+GGG 0.562977 6_4:-7037878 None:intergenic
TTCCTAACAGGATTCTTCGA+TGG 0.563320 6_4:-7037639 None:intergenic
ATGCAACTTCTTCAGCGTCA+AGG 0.564208 6_4:+7037508 Msa0974170:CDS
AAAGTGAATTGCGACGCTGC+TGG 0.570896 6_4:-7037843 None:intergenic
TGCATTTGCTGCAATAGTAG+CGG 0.574043 6_4:-7037490 None:intergenic
CTCACAAACCACTTGCGAGA+GGG 0.577171 6_4:-7038466 None:intergenic
TAATTTGATTAGTTCACTCG+TGG 0.577584 6_4:+7038048 Msa0974170:CDS
GAATATTTGGATCAAACTCA+AGG 0.580223 6_4:-7038285 None:intergenic
AGATGAGCACAGCAGTCACA+TGG 0.587427 6_4:+7038396 Msa0974170:CDS
GTTTGATCCAAATATTCTCA+AGG 0.588305 6_4:+7038291 Msa0974170:CDS
TCGACACCATGTTCATGCAC+AGG 0.588454 6_4:-7037726 None:intergenic
CCGATTTAGTTACCTCCGCA+GGG 0.591874 6_4:-7038102 None:intergenic
CCTATTCCTGTGCATGAACA+TGG 0.596190 6_4:+7037720 Msa0974170:CDS
GAGTTCAGCTATCGCAGCAA+CGG 0.596554 6_4:+7037333 Msa0974170:CDS
CATCTTTGGATTTGAATCGG+AGG 0.601375 6_4:-7038378 None:intergenic
GTAGAATCTGGGGTAGAGCA+TGG 0.603093 6_4:-7037968 None:intergenic
TTGCCTAACTCGCCAACCAG+TGG 0.608662 6_4:+7037783 Msa0974170:CDS
AATACTACCACTGTGAGTCA+TGG 0.609522 6_4:+7037684 Msa0974170:CDS
GACGCTGCTGGATTCTGAGA+TGG 0.609727 6_4:-7037831 None:intergenic
TCGGGGTAGAGGTAGAATCT+GGG 0.610728 6_4:-7037979 None:intergenic
GCAGAATCTTCTGAAATACA+TGG 0.610774 6_4:+7039329 Msa0974170:three_prime_UTR
TTCTTCGATGGATATATAGG+AGG 0.611513 6_4:-7037627 None:intergenic
AAAGTTGCTGGCGAAACTGG+TGG 0.614136 6_4:-7037567 None:intergenic
GGCCAGCTGGAGGTAAAGGT+CGG 0.614768 6_4:-7037947 None:intergenic
GAAAATCACCATATAAGCCA+CGG 0.623056 6_4:-7038333 None:intergenic
TGATTCCGACACCAGCAACT+GGG 0.627867 6_4:+7037463 Msa0974170:CDS
AGGTCGTGCATTTGGCAGGG+GGG 0.628298 6_4:-7037877 None:intergenic
ATGGAAGAATACCGAAGAGG+AGG 0.631037 6_4:+7037422 Msa0974170:CDS
GATGGATATATAGGAGGACG+TGG 0.633038 6_4:-7037621 None:intergenic
ACTCACAAACCACTTGCGAG+AGG 0.633226 6_4:-7038467 None:intergenic
ACAGTGATGAAACGGAGGAG+TGG 0.635697 6_4:+7038656 Msa0974170:CDS
CGTCATAAATCTGTAATCCG+TGG 0.642310 6_4:+7038316 Msa0974170:CDS
TGACTTGACTCCCAATGCCT+CGG 0.643816 6_4:-7038512 None:intergenic
TCAAGCCAACAGCCAACTGT+CGG 0.643822 6_4:+7038019 Msa0974170:intron
GTTGGCTGTTCCGGCCGACG+AGG 0.646045 6_4:+7038588 Msa0974170:CDS
TAGCTAATGAGATAACACCT+TGG 0.648926 6_4:-7038072 None:intergenic
AGCTAATCAAGCCCCTGCGG+AGG 0.650230 6_4:+7038090 Msa0974170:CDS
TCAGTATTAGAATTGAGACC+AGG 0.658819 6_4:-7037537 None:intergenic
CAATTCAAACAATAAATGCA+AGG 0.660363 6_4:-7039449 None:intergenic
TGCATTTAGCATGAATAACG+GGG 0.669690 6_4:-7038750 None:intergenic
GGAGCATGCACATTTACGGA+GGG 0.674855 6_4:-7037600 None:intergenic
CGGGGTAGAGGTAGAATCTG+GGG 0.675595 6_4:-7037978 None:intergenic
TGGAGCATGCACATTTACGG+AGG 0.681918 6_4:-7037601 None:intergenic
GGTAGAGCATGGCCAGCTGG+AGG 0.682509 6_4:-7037957 None:intergenic
CGATTTAGTTACCTCCGCAG+GGG 0.683690 6_4:-7038101 None:intergenic
TTCATGGAAGAATACCGAAG+AGG 0.683939 6_4:+7037419 Msa0974170:CDS
GAACATGGTGTCGAGAACAA+TGG 0.686510 6_4:+7037735 Msa0974170:CDS
CACATTAGGACCAAAATTCG+GGG 0.692250 6_4:-7037996 None:intergenic
ATTAGCTAATCAAGCCCCTG+CGG 0.693399 6_4:+7038087 Msa0974170:CDS
GATGTGGCTTAAAGGTGCCG+AGG 0.696373 6_4:+7038495 Msa0974170:CDS
TTGCTGGCGAAACTGGTGGA+TGG 0.703445 6_4:-7037563 None:intergenic
GGTTTGTGAGTGAGACGATG+TGG 0.711325 6_4:+7038479 Msa0974170:CDS
GCAGTCAAAGAAAACGAATG+CGG 0.728888 6_4:+7039217 Msa0974170:three_prime_UTR
AATTAGACCATGACTCACAG+TGG 0.751691 6_4:-7037691 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAATATAATAACAAAAT+TGG - chr6_4:7038248-7038267 None:intergenic 10.0%
!! ACATAATATAATAACAAAAT+TGG - chr6_4:7038248-7038267 None:intergenic 10.0%
!! TGTTATTATATTATGTTTGT+AGG + chr6_4:7038252-7038271 Msa0974170:intron 15.0%
!!! TATATTTTATTGCAATCAAA+AGG + chr6_4:7039399-7039418 Msa0974170:three_prime_UTR 15.0%
!! TGTTATTATATTATGTTTGT+AGG + chr6_4:7038252-7038271 Msa0974170:intron 15.0%
!!! TATATTTTATTGCAATCAAA+AGG + chr6_4:7039399-7039418 Msa0974170:three_prime_UTR 15.0%
!! GTGATATAAAAATTGAACTA+AGG - chr6_4:7038195-7038214 None:intergenic 20.0%
!!! TTATGTTTGTAGGATTTTAT+TGG + chr6_4:7038262-7038281 Msa0974170:intron 20.0%
!! ATTTGTCCATATTATTCTTT+CGG + chr6_4:7038853-7038872 Msa0974170:intron 20.0%
!!! ACTATACATGTACATAATTT+TGG - chr6_4:7039362-7039381 None:intergenic 20.0%
!! GTGATATAAAAATTGAACTA+AGG - chr6_4:7038195-7038214 None:intergenic 20.0%
!!! TTATGTTTGTAGGATTTTAT+TGG + chr6_4:7038262-7038281 Msa0974170:intron 20.0%
!! ATTTGTCCATATTATTCTTT+CGG + chr6_4:7038853-7038872 Msa0974170:intron 20.0%
!!! ACTATACATGTACATAATTT+TGG - chr6_4:7039362-7039381 None:intergenic 20.0%
! AAAACTGATGAAGAATTTGT+TGG - chr6_4:7037282-7037301 None:intergenic 25.0%
!!! TTAGCATTTATTGATTCGAA+TGG - chr6_4:7037666-7037685 None:intergenic 25.0%
! ATGTGCAATTTACGATATAA+TGG - chr6_4:7038905-7038924 None:intergenic 25.0%
!! ATATCGTAAATTGCACATTT+TGG + chr6_4:7038907-7038926 Msa0974170:intron 25.0%
!!! AAAGATGACGGAAAAAAAAT+AGG - chr6_4:7038953-7038972 None:intergenic 25.0%
! AAACATGACATAAAAGATGA+CGG - chr6_4:7038965-7038984 None:intergenic 25.0%
!! TTTATGTCATGTTTTACATG+AGG + chr6_4:7038971-7038990 Msa0974170:intron 25.0%
!!! GTGATGTTATTATTTTCAAG+TGG + chr6_4:7039110-7039129 Msa0974170:intron 25.0%
! TAAGTTACAACGAACAAAAA+TGG - chr6_4:7039259-7039278 None:intergenic 25.0%
! TGAAAAACTACACATTAATC+CGG - chr6_4:7039288-7039307 None:intergenic 25.0%
! AAAACTGATGAAGAATTTGT+TGG - chr6_4:7037282-7037301 None:intergenic 25.0%
!!! TTAGCATTTATTGATTCGAA+TGG - chr6_4:7037666-7037685 None:intergenic 25.0%
! ATGTGCAATTTACGATATAA+TGG - chr6_4:7038905-7038924 None:intergenic 25.0%
!! ATATCGTAAATTGCACATTT+TGG + chr6_4:7038907-7038926 Msa0974170:intron 25.0%
!!! AAAGATGACGGAAAAAAAAT+AGG - chr6_4:7038953-7038972 None:intergenic 25.0%
! AAACATGACATAAAAGATGA+CGG - chr6_4:7038965-7038984 None:intergenic 25.0%
!! TTTATGTCATGTTTTACATG+AGG + chr6_4:7038971-7038990 Msa0974170:intron 25.0%
!!! GTGATGTTATTATTTTCAAG+TGG + chr6_4:7039110-7039129 Msa0974170:intron 25.0%
! TAAGTTACAACGAACAAAAA+TGG - chr6_4:7039259-7039278 None:intergenic 25.0%
! TGAAAAACTACACATTAATC+CGG - chr6_4:7039288-7039307 None:intergenic 25.0%
!! TCATCAAAACATCTTTTTCG+CGG - chr6_4:7037315-7037334 None:intergenic 30.0%
AAATTAGAATATCCGACAGT+TGG - chr6_4:7038034-7038053 None:intergenic 30.0%
! TAATTTGATTAGTTCACTCG+TGG + chr6_4:7038048-7038067 Msa0974170:CDS 30.0%
! CGCAATTAAACAATAATGGA+AGG - chr6_4:7038223-7038242 None:intergenic 30.0%
GGTACGCAATTAAACAATAA+TGG - chr6_4:7038227-7038246 None:intergenic 30.0%
GAATATTTGGATCAAACTCA+AGG - chr6_4:7038288-7038307 None:intergenic 30.0%
GTTTGATCCAAATATTCTCA+AGG + chr6_4:7038291-7038310 Msa0974170:CDS 30.0%
! ATCTTCTTTCTTTTCTTCAG+TGG - chr6_4:7038563-7038582 None:intergenic 30.0%
AAAGAAAGAAGATGAAGAGT+TGG + chr6_4:7038570-7038589 Msa0974170:CDS 30.0%
! CACATAATGCACATGTATTT+TGG - chr6_4:7038615-7038634 None:intergenic 30.0%
CAAAATACATGTGCATTATG+TGG + chr6_4:7038613-7038632 Msa0974170:CDS 30.0%
TCTGCATTTAGCATGAATAA+CGG - chr6_4:7038755-7038774 None:intergenic 30.0%
TTCATCACAAAATCTTCAGA+CGG - chr6_4:7038790-7038809 None:intergenic 30.0%
! AGATTTTGTGATGAAAGAAG+AGG + chr6_4:7038795-7038814 Msa0974170:three_prime_UTR 30.0%
AAGTCACCGAAAGAATAATA+TGG - chr6_4:7038862-7038881 None:intergenic 30.0%
! TGTTTTACATGAGGATATCA+TGG + chr6_4:7038980-7038999 Msa0974170:intron 30.0%
!! ATGTACATAATTTTGGCAAG+AGG - chr6_4:7039355-7039374 None:intergenic 30.0%
!! TCATCAAAACATCTTTTTCG+CGG - chr6_4:7037315-7037334 None:intergenic 30.0%
AAATTAGAATATCCGACAGT+TGG - chr6_4:7038034-7038053 None:intergenic 30.0%
! TAATTTGATTAGTTCACTCG+TGG + chr6_4:7038048-7038067 Msa0974170:CDS 30.0%
! CGCAATTAAACAATAATGGA+AGG - chr6_4:7038223-7038242 None:intergenic 30.0%
GGTACGCAATTAAACAATAA+TGG - chr6_4:7038227-7038246 None:intergenic 30.0%
GAATATTTGGATCAAACTCA+AGG - chr6_4:7038288-7038307 None:intergenic 30.0%
GTTTGATCCAAATATTCTCA+AGG + chr6_4:7038291-7038310 Msa0974170:CDS 30.0%
! ATCTTCTTTCTTTTCTTCAG+TGG - chr6_4:7038563-7038582 None:intergenic 30.0%
AAAGAAAGAAGATGAAGAGT+TGG + chr6_4:7038570-7038589 Msa0974170:CDS 30.0%
! CACATAATGCACATGTATTT+TGG - chr6_4:7038615-7038634 None:intergenic 30.0%
CAAAATACATGTGCATTATG+TGG + chr6_4:7038613-7038632 Msa0974170:CDS 30.0%
TCTGCATTTAGCATGAATAA+CGG - chr6_4:7038755-7038774 None:intergenic 30.0%
TTCATCACAAAATCTTCAGA+CGG - chr6_4:7038790-7038809 None:intergenic 30.0%
! AGATTTTGTGATGAAAGAAG+AGG + chr6_4:7038795-7038814 Msa0974170:three_prime_UTR 30.0%
AAGTCACCGAAAGAATAATA+TGG - chr6_4:7038862-7038881 None:intergenic 30.0%
! TGTTTTACATGAGGATATCA+TGG + chr6_4:7038980-7038999 Msa0974170:intron 30.0%
!! ATGTACATAATTTTGGCAAG+AGG - chr6_4:7039355-7039374 None:intergenic 30.0%
TAGGCATCAATTAGAGCTAT+TGG - chr6_4:7037375-7037394 None:intergenic 35.0%
!! ATAGCTCTAATTGATGCCTA+TGG + chr6_4:7037375-7037394 Msa0974170:CDS 35.0%
CGAAAAGACAAGAAACTTCA+TGG + chr6_4:7037403-7037422 Msa0974170:CDS 35.0%
TCAGTATTAGAATTGAGACC+AGG - chr6_4:7037540-7037559 None:intergenic 35.0%
TTCTTCGATGGATATATAGG+AGG - chr6_4:7037630-7037649 None:intergenic 35.0%
GGATTCTTCGATGGATATAT+AGG - chr6_4:7037633-7037652 None:intergenic 35.0%
TGAGATGGAAAAAACTGGAA+AGG - chr6_4:7037819-7037838 None:intergenic 35.0%
!! GATTCTGAGATGGAAAAAAC+TGG - chr6_4:7037824-7037843 None:intergenic 35.0%
! AAGAGTTGTTTCCGATTCTT+TGG - chr6_4:7037926-7037945 None:intergenic 35.0%
ACACATTAGGACCAAAATTC+GGG - chr6_4:7038000-7038019 None:intergenic 35.0%
GACACATTAGGACCAAAATT+CGG - chr6_4:7038001-7038020 None:intergenic 35.0%
AGCTAATGAGATAACACCTT+GGG - chr6_4:7038074-7038093 None:intergenic 35.0%
TAGCTAATGAGATAACACCT+TGG - chr6_4:7038075-7038094 None:intergenic 35.0%
TGACGAACCTTGAGAATATT+TGG - chr6_4:7038301-7038320 None:intergenic 35.0%
GAAAATCACCATATAAGCCA+CGG - chr6_4:7038336-7038355 None:intergenic 35.0%
GCTCATCTTTGGATTTGAAT+CGG - chr6_4:7038384-7038403 None:intergenic 35.0%
! TTTCTTTTCTTCAGTGGTCT+CGG - chr6_4:7038557-7038576 None:intergenic 35.0%
! ATTATGTGGAGAACCTTTTG+AGG + chr6_4:7038627-7038646 Msa0974170:CDS 35.0%
TCACTGTAAAACTCCTCAAA+AGG - chr6_4:7038643-7038662 None:intergenic 35.0%
! GGAGTTTTACAGTGATGAAA+CGG + chr6_4:7038648-7038667 Msa0974170:CDS 35.0%
TTATTCCATTAGGCGCATTA+AGG - chr6_4:7038702-7038721 None:intergenic 35.0%
! ATGCCTGTTGTTATTCCATT+AGG - chr6_4:7038712-7038731 None:intergenic 35.0%
TGCATTTAGCATGAATAACG+GGG - chr6_4:7038753-7038772 None:intergenic 35.0%
CTGCATTTAGCATGAATAAC+GGG - chr6_4:7038754-7038773 None:intergenic 35.0%
TCATCACAAAATCTTCAGAC+GGG - chr6_4:7038789-7038808 None:intergenic 35.0%
! TTGTTTTCCTCTTTGTATGC+AGG + chr6_4:7039179-7039198 Msa0974170:intron 35.0%
! TGTTTTCCTCTTTGTATGCA+GGG + chr6_4:7039180-7039199 Msa0974170:intron 35.0%
!! GCAGAATCTTCTGAAATACA+TGG + chr6_4:7039329-7039348 Msa0974170:three_prime_UTR 35.0%
TAGGCATCAATTAGAGCTAT+TGG - chr6_4:7037375-7037394 None:intergenic 35.0%
!! ATAGCTCTAATTGATGCCTA+TGG + chr6_4:7037375-7037394 Msa0974170:CDS 35.0%
CGAAAAGACAAGAAACTTCA+TGG + chr6_4:7037403-7037422 Msa0974170:CDS 35.0%
TCAGTATTAGAATTGAGACC+AGG - chr6_4:7037540-7037559 None:intergenic 35.0%
TTCTTCGATGGATATATAGG+AGG - chr6_4:7037630-7037649 None:intergenic 35.0%
GGATTCTTCGATGGATATAT+AGG - chr6_4:7037633-7037652 None:intergenic 35.0%
TGAGATGGAAAAAACTGGAA+AGG - chr6_4:7037819-7037838 None:intergenic 35.0%
!! GATTCTGAGATGGAAAAAAC+TGG - chr6_4:7037824-7037843 None:intergenic 35.0%
! AAGAGTTGTTTCCGATTCTT+TGG - chr6_4:7037926-7037945 None:intergenic 35.0%
ACACATTAGGACCAAAATTC+GGG - chr6_4:7038000-7038019 None:intergenic 35.0%
GACACATTAGGACCAAAATT+CGG - chr6_4:7038001-7038020 None:intergenic 35.0%
AGCTAATGAGATAACACCTT+GGG - chr6_4:7038074-7038093 None:intergenic 35.0%
TAGCTAATGAGATAACACCT+TGG - chr6_4:7038075-7038094 None:intergenic 35.0%
TGACGAACCTTGAGAATATT+TGG - chr6_4:7038301-7038320 None:intergenic 35.0%
GAAAATCACCATATAAGCCA+CGG - chr6_4:7038336-7038355 None:intergenic 35.0%
GCTCATCTTTGGATTTGAAT+CGG - chr6_4:7038384-7038403 None:intergenic 35.0%
! TTTCTTTTCTTCAGTGGTCT+CGG - chr6_4:7038557-7038576 None:intergenic 35.0%
! ATTATGTGGAGAACCTTTTG+AGG + chr6_4:7038627-7038646 Msa0974170:CDS 35.0%
TCACTGTAAAACTCCTCAAA+AGG - chr6_4:7038643-7038662 None:intergenic 35.0%
! GGAGTTTTACAGTGATGAAA+CGG + chr6_4:7038648-7038667 Msa0974170:CDS 35.0%
TTATTCCATTAGGCGCATTA+AGG - chr6_4:7038702-7038721 None:intergenic 35.0%
! ATGCCTGTTGTTATTCCATT+AGG - chr6_4:7038712-7038731 None:intergenic 35.0%
TGCATTTAGCATGAATAACG+GGG - chr6_4:7038753-7038772 None:intergenic 35.0%
CTGCATTTAGCATGAATAAC+GGG - chr6_4:7038754-7038773 None:intergenic 35.0%
TCATCACAAAATCTTCAGAC+GGG - chr6_4:7038789-7038808 None:intergenic 35.0%
! TTGTTTTCCTCTTTGTATGC+AGG + chr6_4:7039179-7039198 Msa0974170:intron 35.0%
! TGTTTTCCTCTTTGTATGCA+GGG + chr6_4:7039180-7039199 Msa0974170:intron 35.0%
!! GCAGAATCTTCTGAAATACA+TGG + chr6_4:7039329-7039348 Msa0974170:three_prime_UTR 35.0%
! ATTTGTTGGTGTTTCTCTCC+TGG - chr6_4:7037268-7037287 None:intergenic 40.0%
!! AGAGCTATTGGATTTTGACG+AGG - chr6_4:7037363-7037382 None:intergenic 40.0%
! TTGTCTTTTCGCACTACCAT+AGG - chr6_4:7037394-7037413 None:intergenic 40.0%
TTCATGGAAGAATACCGAAG+AGG + chr6_4:7037419-7037438 Msa0974170:CDS 40.0%
! TGCATTTGCTGCAATAGTAG+CGG - chr6_4:7037493-7037512 None:intergenic 40.0%
ATCCATCGAAGAATCCTGTT+AGG + chr6_4:7037637-7037656 Msa0974170:CDS 40.0%
TTCCTAACAGGATTCTTCGA+TGG - chr6_4:7037642-7037661 None:intergenic 40.0%
! GATTCGAATGGATTCCTAAC+AGG - chr6_4:7037654-7037673 None:intergenic 40.0%
AATACTACCACTGTGAGTCA+TGG + chr6_4:7037684-7037703 Msa0974170:CDS 40.0%
AATTAGACCATGACTCACAG+TGG - chr6_4:7037694-7037713 None:intergenic 40.0%
GATGGAAAAAACTGGAAAGG+CGG - chr6_4:7037816-7037835 None:intergenic 40.0%
TTGTTTCCGATTCTTTGGTC+TGG - chr6_4:7037921-7037940 None:intergenic 40.0%
CACATTAGGACCAAAATTCG+GGG - chr6_4:7037999-7038018 None:intergenic 40.0%
TTGATTTAGTTACCTCCGCA+GGG - chr6_4:7038171-7038190 None:intergenic 40.0%
! ATTGATTTAGTTACCTCCGC+AGG - chr6_4:7038172-7038191 None:intergenic 40.0%
CGTCATAAATCTGTAATCCG+TGG + chr6_4:7038316-7038335 Msa0974170:CDS 40.0%
TCTGTAATCCGTGGCTTATA+TGG + chr6_4:7038325-7038344 Msa0974170:CDS 40.0%
CATCTTTGGATTTGAATCGG+AGG - chr6_4:7038381-7038400 None:intergenic 40.0%
!!! ACATGTATTTTGGTCCTCGT+CGG - chr6_4:7038605-7038624 None:intergenic 40.0%
! GTTTTACAGTGATGAAACGG+AGG + chr6_4:7038651-7038670 Msa0974170:CDS 40.0%
GTATACCTTAATGCGCCTAA+TGG + chr6_4:7038694-7038713 Msa0974170:CDS 40.0%
GAATAACAACAGGCATAGAC+AGG + chr6_4:7038716-7038735 Msa0974170:CDS 40.0%
TCACAATAGACTGCAACACT+AGG + chr6_4:7039004-7039023 Msa0974170:intron 40.0%
TGCTTGAAGAAGATCAGAAC+AGG - chr6_4:7039143-7039162 None:intergenic 40.0%
GCAGTCAAAGAAAACGAATG+CGG + chr6_4:7039217-7039236 Msa0974170:three_prime_UTR 40.0%
TCGTTGTAACTTACGAGTTC+CGG + chr6_4:7039266-7039285 Msa0974170:three_prime_UTR 40.0%
GCAAGGAAGTGAAAAATTGC+AGG - chr6_4:7039435-7039454 None:intergenic 40.0%
! ATTTGTTGGTGTTTCTCTCC+TGG - chr6_4:7037268-7037287 None:intergenic 40.0%
!! AGAGCTATTGGATTTTGACG+AGG - chr6_4:7037363-7037382 None:intergenic 40.0%
! TTGTCTTTTCGCACTACCAT+AGG - chr6_4:7037394-7037413 None:intergenic 40.0%
TTCATGGAAGAATACCGAAG+AGG + chr6_4:7037419-7037438 Msa0974170:CDS 40.0%
! TGCATTTGCTGCAATAGTAG+CGG - chr6_4:7037493-7037512 None:intergenic 40.0%
ATCCATCGAAGAATCCTGTT+AGG + chr6_4:7037637-7037656 Msa0974170:CDS 40.0%
TTCCTAACAGGATTCTTCGA+TGG - chr6_4:7037642-7037661 None:intergenic 40.0%
! GATTCGAATGGATTCCTAAC+AGG - chr6_4:7037654-7037673 None:intergenic 40.0%
AATACTACCACTGTGAGTCA+TGG + chr6_4:7037684-7037703 Msa0974170:CDS 40.0%
AATTAGACCATGACTCACAG+TGG - chr6_4:7037694-7037713 None:intergenic 40.0%
GATGGAAAAAACTGGAAAGG+CGG - chr6_4:7037816-7037835 None:intergenic 40.0%
TTGTTTCCGATTCTTTGGTC+TGG - chr6_4:7037921-7037940 None:intergenic 40.0%
CACATTAGGACCAAAATTCG+GGG - chr6_4:7037999-7038018 None:intergenic 40.0%
TTGATTTAGTTACCTCCGCA+GGG - chr6_4:7038171-7038190 None:intergenic 40.0%
! ATTGATTTAGTTACCTCCGC+AGG - chr6_4:7038172-7038191 None:intergenic 40.0%
CGTCATAAATCTGTAATCCG+TGG + chr6_4:7038316-7038335 Msa0974170:CDS 40.0%
TCTGTAATCCGTGGCTTATA+TGG + chr6_4:7038325-7038344 Msa0974170:CDS 40.0%
CATCTTTGGATTTGAATCGG+AGG - chr6_4:7038381-7038400 None:intergenic 40.0%
!!! ACATGTATTTTGGTCCTCGT+CGG - chr6_4:7038605-7038624 None:intergenic 40.0%
! GTTTTACAGTGATGAAACGG+AGG + chr6_4:7038651-7038670 Msa0974170:CDS 40.0%
GTATACCTTAATGCGCCTAA+TGG + chr6_4:7038694-7038713 Msa0974170:CDS 40.0%
GAATAACAACAGGCATAGAC+AGG + chr6_4:7038716-7038735 Msa0974170:CDS 40.0%
TCACAATAGACTGCAACACT+AGG + chr6_4:7039004-7039023 Msa0974170:intron 40.0%
TGCTTGAAGAAGATCAGAAC+AGG - chr6_4:7039143-7039162 None:intergenic 40.0%
GCAGTCAAAGAAAACGAATG+CGG + chr6_4:7039217-7039236 Msa0974170:three_prime_UTR 40.0%
TCGTTGTAACTTACGAGTTC+CGG + chr6_4:7039266-7039285 Msa0974170:three_prime_UTR 40.0%
GCAAGGAAGTGAAAAATTGC+AGG - chr6_4:7039435-7039454 None:intergenic 40.0%
ATGGAAGAATACCGAAGAGG+AGG + chr6_4:7037422-7037441 Msa0974170:CDS 45.0%
CCAATTGAACTCCTCCTCTT+CGG - chr6_4:7037436-7037455 None:intergenic 45.0%
CGAAGAGGAGGAGTTCAATT+GGG + chr6_4:7037434-7037453 Msa0974170:CDS 45.0%
! GCATTTGCTGCAATAGTAGC+GGG - chr6_4:7037492-7037511 None:intergenic 45.0%
ATGCAACTTCTTCAGCGTCA+AGG + chr6_4:7037508-7037527 Msa0974170:CDS 45.0%
TGCAACTTCTTCAGCGTCAA+GGG + chr6_4:7037509-7037528 Msa0974170:CDS 45.0%
TCAAAAGTTGCTGGCGAAAC+TGG - chr6_4:7037573-7037592 None:intergenic 45.0%
ACGTGGAGCATGCACATTTA+CGG - chr6_4:7037607-7037626 None:intergenic 45.0%
GATGGATATATAGGAGGACG+TGG - chr6_4:7037624-7037643 None:intergenic 45.0%
CCATGTTCATGCACAGGAAT+AGG - chr6_4:7037723-7037742 None:intergenic 45.0%
CCTATTCCTGTGCATGAACA+TGG + chr6_4:7037720-7037739 Msa0974170:CDS 45.0%
! GAACATGGTGTCGAGAACAA+TGG + chr6_4:7037735-7037754 Msa0974170:CDS 45.0%
CCTATGCCAGACCAAAGAAT+CGG + chr6_4:7037912-7037931 Msa0974170:CDS 45.0%
! TCTACCTCTACCCCGAATTT+TGG + chr6_4:7037986-7038005 Msa0974170:CDS 45.0%
AATATCCGACAGTTGGCTGT+TGG - chr6_4:7038027-7038046 None:intergenic 45.0%
ATTAGCTAATCAAGCCCCTG+CGG + chr6_4:7038087-7038106 Msa0974170:CDS 45.0%
TGATTTAGTTACCTCCGCAG+GGG - chr6_4:7038170-7038189 None:intergenic 45.0%
AGTGAGACGATGTGGCTTAA+AGG + chr6_4:7038487-7038506 Msa0974170:CDS 45.0%
! TTTTCTTCAGTGGTCTCGGT+TGG - chr6_4:7038553-7038572 None:intergenic 45.0%
AGATGAAGAGTTGGCTGTTC+CGG + chr6_4:7038579-7038598 Msa0974170:CDS 45.0%
GCGCCTAATGGAATAACAAC+AGG + chr6_4:7038706-7038725 Msa0974170:CDS 45.0%
TACGTTCCCTGCATACAAAG+AGG - chr6_4:7039189-7039208 None:intergenic 45.0%
ATGGAAGAATACCGAAGAGG+AGG + chr6_4:7037422-7037441 Msa0974170:CDS 45.0%
CCAATTGAACTCCTCCTCTT+CGG - chr6_4:7037436-7037455 None:intergenic 45.0%
CGAAGAGGAGGAGTTCAATT+GGG + chr6_4:7037434-7037453 Msa0974170:CDS 45.0%
! GCATTTGCTGCAATAGTAGC+GGG - chr6_4:7037492-7037511 None:intergenic 45.0%
ATGCAACTTCTTCAGCGTCA+AGG + chr6_4:7037508-7037527 Msa0974170:CDS 45.0%
TGCAACTTCTTCAGCGTCAA+GGG + chr6_4:7037509-7037528 Msa0974170:CDS 45.0%
TCAAAAGTTGCTGGCGAAAC+TGG - chr6_4:7037573-7037592 None:intergenic 45.0%
ACGTGGAGCATGCACATTTA+CGG - chr6_4:7037607-7037626 None:intergenic 45.0%
GATGGATATATAGGAGGACG+TGG - chr6_4:7037624-7037643 None:intergenic 45.0%
CCATGTTCATGCACAGGAAT+AGG - chr6_4:7037723-7037742 None:intergenic 45.0%
CCTATTCCTGTGCATGAACA+TGG + chr6_4:7037720-7037739 Msa0974170:CDS 45.0%
! GAACATGGTGTCGAGAACAA+TGG + chr6_4:7037735-7037754 Msa0974170:CDS 45.0%
CCTATGCCAGACCAAAGAAT+CGG + chr6_4:7037912-7037931 Msa0974170:CDS 45.0%
! TCTACCTCTACCCCGAATTT+TGG + chr6_4:7037986-7038005 Msa0974170:CDS 45.0%
AATATCCGACAGTTGGCTGT+TGG - chr6_4:7038027-7038046 None:intergenic 45.0%
ATTAGCTAATCAAGCCCCTG+CGG + chr6_4:7038087-7038106 Msa0974170:CDS 45.0%
TGATTTAGTTACCTCCGCAG+GGG - chr6_4:7038170-7038189 None:intergenic 45.0%
AGTGAGACGATGTGGCTTAA+AGG + chr6_4:7038487-7038506 Msa0974170:CDS 45.0%
! TTTTCTTCAGTGGTCTCGGT+TGG - chr6_4:7038553-7038572 None:intergenic 45.0%
AGATGAAGAGTTGGCTGTTC+CGG + chr6_4:7038579-7038598 Msa0974170:CDS 45.0%
GCGCCTAATGGAATAACAAC+AGG + chr6_4:7038706-7038725 Msa0974170:CDS 45.0%
TACGTTCCCTGCATACAAAG+AGG - chr6_4:7039189-7039208 None:intergenic 45.0%
GAGTTCAGCTATCGCAGCAA+CGG + chr6_4:7037333-7037352 Msa0974170:CDS 50.0%
CCGAAGAGGAGGAGTTCAAT+TGG + chr6_4:7037433-7037452 Msa0974170:CDS 50.0%
ATGATTCCGACACCAGCAAC+TGG + chr6_4:7037462-7037481 Msa0974170:CDS 50.0%
TGATTCCGACACCAGCAACT+GGG + chr6_4:7037463-7037482 Msa0974170:CDS 50.0%
AAAGTTGCTGGCGAAACTGG+TGG - chr6_4:7037570-7037589 None:intergenic 50.0%
!!! CGCCAGCAACTTTTGAAACG+AGG + chr6_4:7037577-7037596 Msa0974170:CDS 50.0%
GGCCTCGTTTCAAAAGTTGC+TGG - chr6_4:7037582-7037601 None:intergenic 50.0%
GGAGCATGCACATTTACGGA+GGG - chr6_4:7037603-7037622 None:intergenic 50.0%
TGGAGCATGCACATTTACGG+AGG - chr6_4:7037604-7037623 None:intergenic 50.0%
TCGACACCATGTTCATGCAC+AGG - chr6_4:7037729-7037748 None:intergenic 50.0%
AAAGTGAATTGCGACGCTGC+TGG - chr6_4:7037846-7037865 None:intergenic 50.0%
AACAGGTCGTGCATTTGGCA+GGG - chr6_4:7037883-7037902 None:intergenic 50.0%
TAACAGGTCGTGCATTTGGC+AGG - chr6_4:7037884-7037903 None:intergenic 50.0%
GGCATAACAGGTCGTGCATT+TGG - chr6_4:7037888-7037907 None:intergenic 50.0%
GGCATAGGAAGTGGCATAAC+AGG - chr6_4:7037900-7037919 None:intergenic 50.0%
CTTTGGTCTGGCATAGGAAG+TGG - chr6_4:7037909-7037928 None:intergenic 50.0%
CCGATTCTTTGGTCTGGCAT+AGG - chr6_4:7037915-7037934 None:intergenic 50.0%
! GTAGAATCTGGGGTAGAGCA+TGG - chr6_4:7037971-7037990 None:intergenic 50.0%
TCGGGGTAGAGGTAGAATCT+GGG - chr6_4:7037982-7038001 None:intergenic 50.0%
TTCGGGGTAGAGGTAGAATC+TGG - chr6_4:7037983-7038002 None:intergenic 50.0%
AGGACCAAAATTCGGGGTAG+AGG - chr6_4:7037993-7038012 None:intergenic 50.0%
!! GGCTGTTGGCTTGACACATT+AGG - chr6_4:7038013-7038032 None:intergenic 50.0%
TCAAGCCAACAGCCAACTGT+CGG + chr6_4:7038019-7038038 Msa0974170:intron 50.0%
ATTAGTTCACTCGTGGCCCA+AGG + chr6_4:7038055-7038074 Msa0974170:CDS 50.0%
CGATTTAGTTACCTCCGCAG+GGG - chr6_4:7038104-7038123 None:intergenic 50.0%
CCGATTTAGTTACCTCCGCA+GGG - chr6_4:7038105-7038124 None:intergenic 50.0%
CCCTGCGGAGGTAACTAAAT+CGG + chr6_4:7038102-7038121 Msa0974170:intron 50.0%
ATCGGCTAATCAAACCCCTG+CGG + chr6_4:7038120-7038139 Msa0974170:intron 50.0%
CGATTTAGTTACCTCCGCAG+GGG - chr6_4:7038104-7038123 None:intergenic 50.0%
CCGATTTAGTTACCTCCGCA+GGG - chr6_4:7038105-7038124 None:intergenic 50.0%
CCCTGCGGAGGTAACTAAAT+CGG + chr6_4:7038102-7038121 Msa0974170:intron 50.0%
CCACAAGTTGTGCACTGTCT+AGG - chr6_4:7038358-7038377 None:intergenic 50.0%
CCTAGACAGTGCACAACTTG+TGG + chr6_4:7038355-7038374 Msa0974170:CDS 50.0%
GTGACTGCTGTGCTCATCTT+TGG - chr6_4:7038395-7038414 None:intergenic 50.0%
AGATGAGCACAGCAGTCACA+TGG + chr6_4:7038396-7038415 Msa0974170:CDS 50.0%
AGCACAGCAGTCACATGGAT+TGG + chr6_4:7038401-7038420 Msa0974170:CDS 50.0%
CTCACAAACCACTTGCGAGA+GGG - chr6_4:7038469-7038488 None:intergenic 50.0%
ACTCACAAACCACTTGCGAG+AGG - chr6_4:7038470-7038489 None:intergenic 50.0%
GGTTTGTGAGTGAGACGATG+TGG + chr6_4:7038479-7038498 Msa0974170:CDS 50.0%
!! CTTAAAGGTGCCGAGGCATT+GGG + chr6_4:7038502-7038521 Msa0974170:CDS 50.0%
TGACTTGACTCCCAATGCCT+CGG - chr6_4:7038515-7038534 None:intergenic 50.0%
GTCTCGGTTGGCAAAAAACC+TGG - chr6_4:7038541-7038560 None:intergenic 50.0%
ACAGTGATGAAACGGAGGAG+TGG + chr6_4:7038656-7038675 Msa0974170:CDS 50.0%
ACGGAGGAGTGGATGTATAG+AGG + chr6_4:7038667-7038686 Msa0974170:CDS 50.0%
GAGTTCAGCTATCGCAGCAA+CGG + chr6_4:7037333-7037352 Msa0974170:CDS 50.0%
CCGAAGAGGAGGAGTTCAAT+TGG + chr6_4:7037433-7037452 Msa0974170:CDS 50.0%
ATGATTCCGACACCAGCAAC+TGG + chr6_4:7037462-7037481 Msa0974170:CDS 50.0%
TGATTCCGACACCAGCAACT+GGG + chr6_4:7037463-7037482 Msa0974170:CDS 50.0%
AAAGTTGCTGGCGAAACTGG+TGG - chr6_4:7037570-7037589 None:intergenic 50.0%
!!! CGCCAGCAACTTTTGAAACG+AGG + chr6_4:7037577-7037596 Msa0974170:CDS 50.0%
GGCCTCGTTTCAAAAGTTGC+TGG - chr6_4:7037582-7037601 None:intergenic 50.0%
GGAGCATGCACATTTACGGA+GGG - chr6_4:7037603-7037622 None:intergenic 50.0%
TGGAGCATGCACATTTACGG+AGG - chr6_4:7037604-7037623 None:intergenic 50.0%
TCGACACCATGTTCATGCAC+AGG - chr6_4:7037729-7037748 None:intergenic 50.0%
AAAGTGAATTGCGACGCTGC+TGG - chr6_4:7037846-7037865 None:intergenic 50.0%
AACAGGTCGTGCATTTGGCA+GGG - chr6_4:7037883-7037902 None:intergenic 50.0%
TAACAGGTCGTGCATTTGGC+AGG - chr6_4:7037884-7037903 None:intergenic 50.0%
GGCATAACAGGTCGTGCATT+TGG - chr6_4:7037888-7037907 None:intergenic 50.0%
GGCATAGGAAGTGGCATAAC+AGG - chr6_4:7037900-7037919 None:intergenic 50.0%
CTTTGGTCTGGCATAGGAAG+TGG - chr6_4:7037909-7037928 None:intergenic 50.0%
CCGATTCTTTGGTCTGGCAT+AGG - chr6_4:7037915-7037934 None:intergenic 50.0%
! GTAGAATCTGGGGTAGAGCA+TGG - chr6_4:7037971-7037990 None:intergenic 50.0%
TCGGGGTAGAGGTAGAATCT+GGG - chr6_4:7037982-7038001 None:intergenic 50.0%
TTCGGGGTAGAGGTAGAATC+TGG - chr6_4:7037983-7038002 None:intergenic 50.0%
AGGACCAAAATTCGGGGTAG+AGG - chr6_4:7037993-7038012 None:intergenic 50.0%
!! GGCTGTTGGCTTGACACATT+AGG - chr6_4:7038013-7038032 None:intergenic 50.0%
TCAAGCCAACAGCCAACTGT+CGG + chr6_4:7038019-7038038 Msa0974170:intron 50.0%
ATTAGTTCACTCGTGGCCCA+AGG + chr6_4:7038055-7038074 Msa0974170:CDS 50.0%
CGATTTAGTTACCTCCGCAG+GGG - chr6_4:7038104-7038123 None:intergenic 50.0%
CCGATTTAGTTACCTCCGCA+GGG - chr6_4:7038105-7038124 None:intergenic 50.0%
CCCTGCGGAGGTAACTAAAT+CGG + chr6_4:7038102-7038121 Msa0974170:intron 50.0%
ATCGGCTAATCAAACCCCTG+CGG + chr6_4:7038120-7038139 Msa0974170:intron 50.0%
CGATTTAGTTACCTCCGCAG+GGG - chr6_4:7038104-7038123 None:intergenic 50.0%
CCGATTTAGTTACCTCCGCA+GGG - chr6_4:7038105-7038124 None:intergenic 50.0%
CCCTGCGGAGGTAACTAAAT+CGG + chr6_4:7038102-7038121 Msa0974170:intron 50.0%
CCACAAGTTGTGCACTGTCT+AGG - chr6_4:7038358-7038377 None:intergenic 50.0%
CCTAGACAGTGCACAACTTG+TGG + chr6_4:7038355-7038374 Msa0974170:CDS 50.0%
GTGACTGCTGTGCTCATCTT+TGG - chr6_4:7038395-7038414 None:intergenic 50.0%
AGATGAGCACAGCAGTCACA+TGG + chr6_4:7038396-7038415 Msa0974170:CDS 50.0%
AGCACAGCAGTCACATGGAT+TGG + chr6_4:7038401-7038420 Msa0974170:CDS 50.0%
CTCACAAACCACTTGCGAGA+GGG - chr6_4:7038469-7038488 None:intergenic 50.0%
ACTCACAAACCACTTGCGAG+AGG - chr6_4:7038470-7038489 None:intergenic 50.0%
GGTTTGTGAGTGAGACGATG+TGG + chr6_4:7038479-7038498 Msa0974170:CDS 50.0%
!! CTTAAAGGTGCCGAGGCATT+GGG + chr6_4:7038502-7038521 Msa0974170:CDS 50.0%
TGACTTGACTCCCAATGCCT+CGG - chr6_4:7038515-7038534 None:intergenic 50.0%
GTCTCGGTTGGCAAAAAACC+TGG - chr6_4:7038541-7038560 None:intergenic 50.0%
ACAGTGATGAAACGGAGGAG+TGG + chr6_4:7038656-7038675 Msa0974170:CDS 50.0%
ACGGAGGAGTGGATGTATAG+AGG + chr6_4:7038667-7038686 Msa0974170:CDS 50.0%
!! TCAGCGTCAAGGGTGTTTCC+TGG + chr6_4:7037519-7037538 Msa0974170:CDS 55.0%
TTGCTGGCGAAACTGGTGGA+TGG - chr6_4:7037566-7037585 None:intergenic 55.0%
GCGAGTTAGGCAACTGATGC+AGG - chr6_4:7037776-7037795 None:intergenic 55.0%
TTGCCTAACTCGCCAACCAG+TGG + chr6_4:7037783-7037802 Msa0974170:CDS 55.0%
! TGTCCACTGGTTGGCGAGTT+AGG - chr6_4:7037789-7037808 None:intergenic 55.0%
GAAAGGCGGTGTTTGTCCAC+TGG - chr6_4:7037802-7037821 None:intergenic 55.0%
! GACGCTGCTGGATTCTGAGA+TGG - chr6_4:7037834-7037853 None:intergenic 55.0%
ACAGGTCGTGCATTTGGCAG+GGG - chr6_4:7037882-7037901 None:intergenic 55.0%
TTCCGACCTTTACCTCCAGC+TGG + chr6_4:7037945-7037964 Msa0974170:CDS 55.0%
CGGGGTAGAGGTAGAATCTG+GGG - chr6_4:7037981-7038000 None:intergenic 55.0%
! GCCGATTTAGTTACCTCCGC+AGG - chr6_4:7038106-7038125 None:intergenic 55.0%
! GCCGATTTAGTTACCTCCGC+AGG - chr6_4:7038106-7038125 None:intergenic 55.0%
ATCGGCTAATCAAGCCCCTG+CGG + chr6_4:7038153-7038172 Msa0974170:intron 55.0%
AGCAGAAACCCTCTCGCAAG+TGG + chr6_4:7038458-7038477 Msa0974170:CDS 55.0%
!! GATGTGGCTTAAAGGTGCCG+AGG + chr6_4:7038495-7038514 Msa0974170:CDS 55.0%
!! GCTTAAAGGTGCCGAGGCAT+TGG + chr6_4:7038501-7038520 Msa0974170:CDS 55.0%
TTGGGAGTCAAGTCAGCTCC+AGG + chr6_4:7038520-7038539 Msa0974170:CDS 55.0%
!!! GTATTTTGGTCCTCGTCGGC+CGG - chr6_4:7038601-7038620 None:intergenic 55.0%
GGCATAGACAGGTCGCAGTT+AGG + chr6_4:7038727-7038746 Msa0974170:CDS 55.0%
!! TCAGCGTCAAGGGTGTTTCC+TGG + chr6_4:7037519-7037538 Msa0974170:CDS 55.0%
TTGCTGGCGAAACTGGTGGA+TGG - chr6_4:7037566-7037585 None:intergenic 55.0%
GCGAGTTAGGCAACTGATGC+AGG - chr6_4:7037776-7037795 None:intergenic 55.0%
TTGCCTAACTCGCCAACCAG+TGG + chr6_4:7037783-7037802 Msa0974170:CDS 55.0%
! TGTCCACTGGTTGGCGAGTT+AGG - chr6_4:7037789-7037808 None:intergenic 55.0%
GAAAGGCGGTGTTTGTCCAC+TGG - chr6_4:7037802-7037821 None:intergenic 55.0%
! GACGCTGCTGGATTCTGAGA+TGG - chr6_4:7037834-7037853 None:intergenic 55.0%
ACAGGTCGTGCATTTGGCAG+GGG - chr6_4:7037882-7037901 None:intergenic 55.0%
TTCCGACCTTTACCTCCAGC+TGG + chr6_4:7037945-7037964 Msa0974170:CDS 55.0%
CGGGGTAGAGGTAGAATCTG+GGG - chr6_4:7037981-7038000 None:intergenic 55.0%
! GCCGATTTAGTTACCTCCGC+AGG - chr6_4:7038106-7038125 None:intergenic 55.0%
! GCCGATTTAGTTACCTCCGC+AGG - chr6_4:7038106-7038125 None:intergenic 55.0%
ATCGGCTAATCAAGCCCCTG+CGG + chr6_4:7038153-7038172 Msa0974170:intron 55.0%
AGCAGAAACCCTCTCGCAAG+TGG + chr6_4:7038458-7038477 Msa0974170:CDS 55.0%
!! GATGTGGCTTAAAGGTGCCG+AGG + chr6_4:7038495-7038514 Msa0974170:CDS 55.0%
!! GCTTAAAGGTGCCGAGGCAT+TGG + chr6_4:7038501-7038520 Msa0974170:CDS 55.0%
TTGGGAGTCAAGTCAGCTCC+AGG + chr6_4:7038520-7038539 Msa0974170:CDS 55.0%
!!! GTATTTTGGTCCTCGTCGGC+CGG - chr6_4:7038601-7038620 None:intergenic 55.0%
GGCATAGACAGGTCGCAGTT+AGG + chr6_4:7038727-7038746 Msa0974170:CDS 55.0%
GGCTTCCCAGTTGCTGGTGT+CGG - chr6_4:7037471-7037490 None:intergenic 60.0%
GGCGGTGTTTGTCCACTGGT+TGG - chr6_4:7037798-7037817 None:intergenic 60.0%
! TTTGGCAGGGGGGCATGTCT+TGG - chr6_4:7037870-7037889 None:intergenic 60.0%
AGGTCGTGCATTTGGCAGGG+GGG - chr6_4:7037880-7037899 None:intergenic 60.0%
CAGGTCGTGCATTTGGCAGG+GGG - chr6_4:7037881-7037900 None:intergenic 60.0%
GGCCAGCTGGAGGTAAAGGT+CGG - chr6_4:7037950-7037969 None:intergenic 60.0%
GCATGGCCAGCTGGAGGTAA+AGG - chr6_4:7037954-7037973 None:intergenic 60.0%
AGCTAATCAAGCCCCTGCGG+AGG + chr6_4:7038090-7038109 Msa0974170:CDS 60.0%
GGCTAATCAAACCCCTGCGG+AGG + chr6_4:7038123-7038142 Msa0974170:intron 60.0%
GGCTTCCCAGTTGCTGGTGT+CGG - chr6_4:7037471-7037490 None:intergenic 60.0%
GGCGGTGTTTGTCCACTGGT+TGG - chr6_4:7037798-7037817 None:intergenic 60.0%
! TTTGGCAGGGGGGCATGTCT+TGG - chr6_4:7037870-7037889 None:intergenic 60.0%
AGGTCGTGCATTTGGCAGGG+GGG - chr6_4:7037880-7037899 None:intergenic 60.0%
CAGGTCGTGCATTTGGCAGG+GGG - chr6_4:7037881-7037900 None:intergenic 60.0%
GGCCAGCTGGAGGTAAAGGT+CGG - chr6_4:7037950-7037969 None:intergenic 60.0%
GCATGGCCAGCTGGAGGTAA+AGG - chr6_4:7037954-7037973 None:intergenic 60.0%
AGCTAATCAAGCCCCTGCGG+AGG + chr6_4:7038090-7038109 Msa0974170:CDS 60.0%
GGCTAATCAAACCCCTGCGG+AGG + chr6_4:7038123-7038142 Msa0974170:intron 60.0%
!! GTAGCGGGCTTCCCAGTTGC+TGG - chr6_4:7037477-7037496 None:intergenic 65.0%
GGTAGAGCATGGCCAGCTGG+AGG - chr6_4:7037960-7037979 None:intergenic 65.0%
TGGGGTAGAGCATGGCCAGC+TGG - chr6_4:7037963-7037982 None:intergenic 65.0%
GGCTAATCAAGCCCCTGCGG+AGG + chr6_4:7038156-7038175 Msa0974170:intron 65.0%
!! GTAGCGGGCTTCCCAGTTGC+TGG - chr6_4:7037477-7037496 None:intergenic 65.0%
GGTAGAGCATGGCCAGCTGG+AGG - chr6_4:7037960-7037979 None:intergenic 65.0%
TGGGGTAGAGCATGGCCAGC+TGG - chr6_4:7037963-7037982 None:intergenic 65.0%
GGCTAATCAAGCCCCTGCGG+AGG + chr6_4:7038156-7038175 Msa0974170:intron 65.0%
GTTGGCTGTTCCGGCCGACG+AGG + chr6_4:7038588-7038607 Msa0974170:CDS 70.0%
GTTGGCTGTTCCGGCCGACG+AGG + chr6_4:7038588-7038607 Msa0974170:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 7037251 7039463 7037251 ID=Msa0974170;Name=Msa0974170
chr6_4 mRNA 7037251 7039463 7037251 ID=Msa0974170-mRNA-1;Parent=Msa0974170;Name=Msa0974170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=7|0.66|0.5|1|0|0.25|4|299|450
chr6_4 exon 7037251 7038015 7037251 ID=Msa0974170-mRNA-1:exon:2793;Parent=Msa0974170-mRNA-1
chr6_4 exon 7038024 7038111 7038024 ID=Msa0974170-mRNA-1:exon:2794;Parent=Msa0974170-mRNA-1
chr6_4 exon 7038274 7038816 7038274 ID=Msa0974170-mRNA-1:exon:2795;Parent=Msa0974170-mRNA-1
chr6_4 exon 7039201 7039463 7039201 ID=Msa0974170-mRNA-1:exon:2796;Parent=Msa0974170-mRNA-1
chr6_4 five_prime_UTR 7037251 7037257 7037251 ID=Msa0974170-mRNA-1:five_prime_utr;Parent=Msa0974170-mRNA-1
chr6_4 CDS 7037258 7038015 7037258 ID=Msa0974170-mRNA-1:cds;Parent=Msa0974170-mRNA-1
chr6_4 CDS 7038024 7038111 7038024 ID=Msa0974170-mRNA-1:cds;Parent=Msa0974170-mRNA-1
chr6_4 CDS 7038274 7038780 7038274 ID=Msa0974170-mRNA-1:cds;Parent=Msa0974170-mRNA-1
chr6_4 three_prime_UTR 7038781 7038816 7038781 ID=Msa0974170-mRNA-1:three_prime_utr;Parent=Msa0974170-mRNA-1
chr6_4 three_prime_UTR 7039201 7039463 7039201 ID=Msa0974170-mRNA-1:three_prime_utr;Parent=Msa0974170-mRNA-1
Gene Sequence

>Msa0974170

ATGCTTGCCAGGAGAGAAACACCAACAAATTCTTCATCAGTTTTCTCACACTTTCCGCGAAAAAGATGTTTTGATGAGTTCAGCTATCGCAGCAACGGACAACCTCGTCAAAATCCAATAGCTCTAATTGATGCCTATGGTAGTGCGAAAAGACAAGAAACTTCATGGAAGAATACCGAAGAGGAGGAGTTCAATTGGGAAGATATGATTCCGACACCAGCAACTGGGAAGCCCGCTACTATTGCAGCAAATGCAACTTCTTCAGCGTCAAGGGTGTTTCCTGGTCTCAATTCTAATACTGAGTACCATCCACCAGTTTCGCCAGCAACTTTTGAAACGAGGCCCTCCGTAAATGTGCATGCTCCACGTCCTCCTATATATCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCTAATACTACCACTGTGAGTCATGGTCTAATTAATAGACCTATTCCTGTGCATGAACATGGTGTCGAGAACAATGGTATCAGTAAAAGAAACCTGCATCAGTTGCCTAACTCGCCAACCAGTGGACAAACACCGCCTTTCCAGTTTTTTCCATCTCAGAATCCAGCAGCGTCGCAATTCACTTTGCCAAGACATGCCCCCCTGCCAAATGCACGACCTGTTATGCCACTTCCTATGCCAGACCAAAGAATCGGAAACAACTCTTTCCGACCTTTACCTCCAGCTGGCCATGCTCTACCCCAGATTCTACCTCTACCCCGAATTTTGGTCCTAATCCAACAGCCAACTGTCGGATATTCTAATTTGATTAGTTCACTCGTGGCCCAAGGTGTTATCTCATTAGCTAATCAAGCCCCTGCGGAGGATTTTATTGGCCTTGAGTTTGATCCAAATATTCTCAAGGTTCGTCATAAATCTGTAATCCGTGGCTTATATGGTGATTTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCAAAGATGAGCACAGCAGTCACATGGATTGGCATGTAACTAAGAATCGTATGTCTAAAAACAATAAGCAGAAACCCTCTCGCAAGTGGTTTGTGAGTGAGACGATGTGGCTTAAAGGTGCCGAGGCATTGGGAGTCAAGTCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAAGAAAAGAAAGAAGATGAAGAGTTGGCTGTTCCGGCCGACGAGGACCAAAATACATGTGCATTATGTGGAGAACCTTTTGAGGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGAATAACAACAGGCATAGACAGGTCGCAGTTAGGCCCCGTTATTCATGCTAAATGCAGATCTTAA

Protein sequence

>Msa0974170

MLARRETPTNSSSVFSHFPRKRCFDEFSYRSNGQPRQNPIALIDAYGSAKRQETSWKNTEEEEFNWEDMIPTPATGKPATIAANATSSASRVFPGLNSNTEYHPPVSPATFETRPSVNVHAPRPPIYPSKNPVRNPFESINANTTTVSHGLINRPIPVHEHGVENNGISKRNLHQLPNSPTSGQTPPFQFFPSQNPAASQFTLPRHAPLPNARPVMPLPMPDQRIGNNSFRPLPPAGHALPQILPLPRILVLIQQPTVGYSNLISSLVAQGVISLANQAPAEDFIGLEFDPNILKVRHKSVIRGLYGDFPRQCTTCGLRFKSKDEHSSHMDWHVTKNRMSKNNKQKPSRKWFVSETMWLKGAEALGVKSAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNAPNGITTGIDRSQLGPVIHAKCRS*