Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974360 | XP_013450953.1 | 98.201 | 278 | 4 | 1 | 1 | 278 | 1 | 277 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974360 | sp|Q00466|HAT7_ARATH | 52.027 | 296 | 102 | 12 | 1 | 271 | 22 | 302 | 1.64e-81 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974360 | A0A072U5Q1 | 98.201 | 278 | 4 | 1 | 1 | 278 | 1 | 277 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0974360 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974360 | MtrunA17_Chr6g0453021 | 98.201 | 278 | 4 | 1 | 1 | 278 | 1 | 277 | 0.0 | 563 |
| Msa0974360 | MtrunA17_Chr7g0217111 | 59.247 | 292 | 77 | 10 | 1 | 270 | 1 | 272 | 1.76e-105 | 307 |
| Msa0974360 | MtrunA17_Chr8g0362151 | 50.498 | 301 | 99 | 9 | 1 | 273 | 1 | 279 | 1.44e-79 | 242 |
| Msa0974360 | MtrunA17_Chr5g0416391 | 53.333 | 255 | 77 | 6 | 49 | 273 | 38 | 280 | 2.02e-71 | 221 |
| Msa0974360 | MtrunA17_Chr5g0415941 | 43.802 | 242 | 94 | 10 | 42 | 260 | 39 | 261 | 2.50e-39 | 139 |
| Msa0974360 | MtrunA17_Chr3g0119291 | 45.455 | 198 | 93 | 4 | 83 | 266 | 42 | 238 | 3.27e-39 | 137 |
| Msa0974360 | MtrunA17_Chr8g0381741 | 61.682 | 107 | 40 | 1 | 87 | 192 | 43 | 149 | 6.78e-38 | 135 |
| Msa0974360 | MtrunA17_Chr3g0123691 | 54.839 | 124 | 47 | 1 | 78 | 192 | 32 | 155 | 9.10e-37 | 132 |
| Msa0974360 | MtrunA17_Chr8g0362751 | 69.792 | 96 | 29 | 0 | 97 | 192 | 89 | 184 | 1.41e-36 | 131 |
| Msa0974360 | MtrunA17_Chr6g0450991 | 63.000 | 100 | 37 | 0 | 93 | 192 | 63 | 162 | 5.35e-36 | 130 |
| Msa0974360 | MtrunA17_Chr4g0060031 | 56.250 | 112 | 49 | 0 | 81 | 192 | 79 | 190 | 4.36e-34 | 126 |
| Msa0974360 | MtrunA17_Chr3g0127511 | 56.044 | 91 | 40 | 0 | 99 | 189 | 40 | 130 | 1.02e-27 | 107 |
| Msa0974360 | MtrunA17_Chr7g0265521 | 54.348 | 92 | 42 | 0 | 96 | 187 | 62 | 153 | 1.22e-27 | 106 |
| Msa0974360 | MtrunA17_Chr1g0179581 | 59.259 | 81 | 33 | 0 | 96 | 176 | 27 | 107 | 5.19e-26 | 99.0 |
| Msa0974360 | MtrunA17_Chr8g0346251 | 53.488 | 86 | 40 | 0 | 104 | 189 | 48 | 133 | 1.84e-25 | 101 |
| Msa0974360 | MtrunA17_Chr5g0403701 | 52.632 | 95 | 45 | 0 | 97 | 191 | 53 | 147 | 1.87e-20 | 87.0 |
| Msa0974360 | MtrunA17_Chr5g0403691 | 52.128 | 94 | 45 | 0 | 97 | 190 | 53 | 146 | 4.08e-20 | 86.3 |
| Msa0974360 | MtrunA17_Chr4g0055851 | 46.154 | 104 | 55 | 1 | 81 | 184 | 105 | 207 | 4.56e-20 | 87.4 |
| Msa0974360 | MtrunA17_Chr1g0151971 | 51.064 | 94 | 39 | 1 | 97 | 190 | 130 | 216 | 1.38e-17 | 80.9 |
| Msa0974360 | MtrunA17_Chr2g0308611 | 41.463 | 123 | 49 | 2 | 84 | 190 | 171 | 286 | 2.81e-17 | 80.5 |
| Msa0974360 | MtrunA17_Chr5g0400781 | 45.192 | 104 | 50 | 1 | 87 | 190 | 113 | 209 | 5.56e-17 | 78.6 |
| Msa0974360 | MtrunA17_Chr7g0258831 | 39.041 | 146 | 78 | 3 | 45 | 190 | 112 | 246 | 5.65e-17 | 79.0 |
| Msa0974360 | MtrunA17_Chr5g0399491 | 45.000 | 100 | 54 | 1 | 85 | 184 | 125 | 223 | 6.68e-17 | 79.0 |
| Msa0974360 | MtrunA17_Chr4g0071411 | 47.253 | 91 | 41 | 1 | 100 | 190 | 91 | 174 | 2.03e-16 | 76.3 |
| Msa0974360 | MtrunA17_Chr8g0335131 | 48.864 | 88 | 45 | 0 | 97 | 184 | 146 | 233 | 2.09e-16 | 77.8 |
| Msa0974360 | MtrunA17_Chr4g0054421 | 44.231 | 104 | 50 | 2 | 87 | 190 | 118 | 213 | 3.30e-16 | 76.6 |
| Msa0974360 | MtrunA17_Chr1g0175651 | 43.478 | 115 | 52 | 3 | 76 | 190 | 139 | 240 | 4.42e-16 | 76.6 |
| Msa0974360 | MtrunA17_Chr4g0044091 | 48.864 | 88 | 45 | 0 | 97 | 184 | 65 | 152 | 1.55e-15 | 73.2 |
| Msa0974360 | MtrunA17_Chr3g0135331 | 38.136 | 118 | 58 | 2 | 97 | 199 | 145 | 262 | 1.52e-13 | 69.3 |
| Msa0974360 | MtrunA17_Chr2g0299031 | 43.182 | 88 | 50 | 0 | 97 | 184 | 82 | 169 | 6.04e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0974360 | AT5G15150.1 | 52.027 | 296 | 102 | 12 | 1 | 271 | 22 | 302 | 1.67e-82 | 251 |
| Msa0974360 | AT3G01220.1 | 48.611 | 288 | 103 | 10 | 1 | 271 | 16 | 275 | 6.19e-79 | 241 |
| Msa0974360 | AT1G69780.1 | 46.906 | 307 | 111 | 10 | 1 | 275 | 7 | 293 | 3.46e-69 | 216 |
| Msa0974360 | AT1G26960.1 | 50.235 | 213 | 86 | 5 | 74 | 275 | 51 | 254 | 7.66e-59 | 188 |
| Msa0974360 | AT5G65310.2 | 54.545 | 143 | 54 | 2 | 81 | 212 | 34 | 176 | 4.63e-40 | 141 |
| Msa0974360 | AT5G65310.1 | 54.545 | 143 | 54 | 2 | 81 | 212 | 52 | 194 | 4.93e-40 | 141 |
| Msa0974360 | AT2G22430.1 | 65.049 | 103 | 36 | 0 | 90 | 192 | 55 | 157 | 2.19e-39 | 140 |
| Msa0974360 | AT4G40060.1 | 64.646 | 99 | 35 | 0 | 94 | 192 | 56 | 154 | 1.20e-38 | 137 |
| Msa0974360 | AT3G01470.1 | 61.000 | 100 | 39 | 0 | 93 | 192 | 64 | 163 | 8.23e-37 | 132 |
| Msa0974360 | AT2G46680.1 | 55.319 | 94 | 42 | 0 | 98 | 191 | 33 | 126 | 8.13e-29 | 110 |
| Msa0974360 | AT3G61890.1 | 55.556 | 90 | 40 | 0 | 100 | 189 | 33 | 122 | 5.84e-27 | 105 |
| Msa0974360 | AT1G27045.1 | 35.349 | 215 | 99 | 6 | 9 | 217 | 12 | 192 | 1.82e-26 | 103 |
| Msa0974360 | AT2G46680.2 | 54.545 | 88 | 40 | 0 | 98 | 185 | 33 | 120 | 2.50e-26 | 104 |
| Msa0974360 | AT1G27045.5 | 45.600 | 125 | 64 | 1 | 97 | 217 | 25 | 149 | 2.94e-25 | 99.4 |
| Msa0974360 | AT1G27045.3 | 45.600 | 125 | 64 | 1 | 97 | 217 | 25 | 149 | 2.94e-25 | 99.4 |
| Msa0974360 | AT1G27045.2 | 45.600 | 125 | 64 | 1 | 97 | 217 | 17 | 141 | 3.03e-25 | 99.4 |
| Msa0974360 | AT1G27045.4 | 36.757 | 185 | 81 | 5 | 9 | 191 | 12 | 162 | 6.66e-25 | 100 |
| Msa0974360 | AT5G03790.1 | 45.946 | 111 | 57 | 2 | 97 | 205 | 77 | 186 | 2.27e-23 | 95.9 |
| Msa0974360 | AT2G18550.1 | 42.657 | 143 | 65 | 3 | 97 | 222 | 61 | 203 | 5.26e-22 | 91.7 |
| Msa0974360 | AT2G36610.1 | 43.478 | 115 | 54 | 3 | 96 | 199 | 70 | 184 | 1.22e-21 | 89.7 |
| Msa0974360 | AT5G03790.2 | 48.387 | 93 | 41 | 1 | 97 | 189 | 77 | 162 | 1.39e-21 | 90.1 |
| Msa0974360 | AT4G36740.2 | 51.111 | 90 | 44 | 0 | 97 | 186 | 56 | 145 | 3.05e-20 | 87.0 |
| Msa0974360 | AT4G36740.1 | 51.111 | 90 | 44 | 0 | 97 | 186 | 55 | 144 | 3.18e-20 | 87.0 |
| Msa0974360 | AT5G53980.1 | 46.000 | 100 | 54 | 0 | 88 | 187 | 2 | 101 | 1.55e-19 | 83.6 |
| Msa0974360 | AT5G66700.1 | 46.602 | 103 | 53 | 1 | 86 | 186 | 58 | 160 | 2.41e-19 | 84.7 |
| Msa0974360 | AT4G37790.1 | 48.077 | 104 | 45 | 2 | 87 | 190 | 118 | 212 | 1.41e-18 | 83.6 |
| Msa0974360 | AT2G01430.1 | 44.144 | 111 | 54 | 2 | 80 | 190 | 123 | 225 | 3.80e-18 | 82.4 |
| Msa0974360 | AT5G47370.1 | 41.322 | 121 | 56 | 2 | 81 | 190 | 103 | 219 | 7.30e-17 | 79.0 |
| Msa0974360 | AT4G17460.1 | 46.667 | 105 | 51 | 2 | 87 | 190 | 124 | 224 | 9.15e-17 | 78.6 |
| Msa0974360 | AT3G60390.1 | 41.322 | 121 | 69 | 2 | 64 | 184 | 131 | 249 | 1.10e-16 | 79.0 |
| Msa0974360 | AT2G22800.1 | 46.154 | 104 | 47 | 2 | 87 | 190 | 105 | 199 | 1.23e-16 | 78.2 |
| Msa0974360 | AT5G06710.1 | 37.500 | 152 | 84 | 3 | 87 | 234 | 183 | 327 | 5.27e-16 | 77.4 |
| Msa0974360 | AT2G44910.1 | 46.591 | 88 | 47 | 0 | 97 | 184 | 163 | 250 | 3.62e-15 | 74.7 |
| Msa0974360 | AT4G16780.1 | 43.878 | 98 | 53 | 1 | 87 | 184 | 121 | 216 | 8.66e-15 | 73.2 |
| Msa0974360 | AT1G70920.1 | 47.727 | 88 | 46 | 0 | 97 | 184 | 69 | 156 | 9.45e-14 | 68.9 |
| Msa0974360 | AT1G70920.2 | 47.727 | 88 | 46 | 0 | 97 | 184 | 39 | 126 | 1.23e-13 | 68.2 |
| Msa0974360 | AT2G01430.2 | 47.143 | 70 | 36 | 1 | 80 | 149 | 123 | 191 | 6.11e-12 | 63.9 |
Find 75 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACCTTGCTCTTCTATTT+TGG | 0.086155 | 6_4:+7358017 | None:intergenic |
| ATTTGGATTCCGAATAATTT+AGG | 0.114276 | 6_4:-7355830 | Msa0974360:three_prime_UTR |
| TAAAATATTAGATTTGAATT+TGG | 0.167679 | 6_4:+7355941 | None:intergenic |
| TTGATGAGCAGCAGAGTTTA+TGG | 0.202182 | 6_4:-7356195 | Msa0974360:CDS |
| TCCGCATTTGTTTGGATAAT+CGG | 0.241023 | 6_4:-7355902 | Msa0974360:three_prime_UTR |
| CTTGTAGGCTTAAGTGAATT+TGG | 0.261204 | 6_4:+7356292 | None:intergenic |
| GTGTGAATACAACATGAATT+TGG | 0.268969 | 6_4:-7355847 | Msa0974360:three_prime_UTR |
| ATGCAATTGGCTAAAGCTTT+GGG | 0.280624 | 6_4:-7358070 | Msa0974360:CDS |
| AATAAAATTCCGCATTTGTT+TGG | 0.286462 | 6_4:-7355910 | Msa0974360:three_prime_UTR |
| TTTGGATTCCGAATAATTTA+GGG | 0.302709 | 6_4:-7355829 | Msa0974360:three_prime_UTR |
| CCACCTCATCAACACTTTCA+AGG | 0.311971 | 6_4:-7358656 | Msa0974360:intron |
| AGCAGCAGAGTTTATGGCCT+TGG | 0.338430 | 6_4:-7356189 | Msa0974360:CDS |
| GAAGCAATTTGATTCTCTTA+AGG | 0.348897 | 6_4:-7357957 | Msa0974360:CDS |
| TCATCGAGTCTTAACGGAAT+TGG | 0.349906 | 6_4:+7356149 | None:intergenic |
| CAATTTATGTTTGTGTAGAT+TGG | 0.354618 | 6_4:-7355738 | Msa0974360:three_prime_UTR |
| ACAGATAGAGAGAGAGAATA+AGG | 0.356776 | 6_4:+7359098 | None:intergenic |
| GTGAACATCAATGAATATTT+CGG | 0.362591 | 6_4:-7356048 | Msa0974360:three_prime_UTR |
| ATCCTTTCATCGAGTCTTAA+CGG | 0.365553 | 6_4:+7356143 | None:intergenic |
| AATGCAATTGGCTAAAGCTT+TGG | 0.380110 | 6_4:-7358071 | Msa0974360:CDS |
| CTGATCTTGAAGAGCATTGA+AGG | 0.381692 | 6_4:+7356257 | None:intergenic |
| AGGAGCTGTGTCATACTTGT+AGG | 0.398751 | 6_4:+7356277 | None:intergenic |
| AACCTAGACAAGTAGCTATA+TGG | 0.403297 | 6_4:-7358042 | Msa0974360:CDS |
| GTGAATTTGGTGTTCTAGAA+AGG | 0.404843 | 6_4:+7356305 | None:intergenic |
| GAAACAGAAAATGACCCTTA+TGG | 0.416567 | 6_4:-7358875 | Msa0974360:five_prime_UTR |
| TGAAGAAGGGTACTCTCAAA+TGG | 0.418066 | 6_4:-7358182 | Msa0974360:CDS |
| AGCTACAAACTCTAAAGAAA+AGG | 0.429689 | 6_4:-7356420 | Msa0974360:CDS |
| GGTATAGCTATAAAGCCATA+AGG | 0.436155 | 6_4:+7358860 | None:intergenic |
| TTCTTCTTCAACTTCTACCA+TGG | 0.441834 | 6_4:-7358783 | Msa0974360:exon |
| TCGCTTTCACTCACTCAATC+AGG | 0.467669 | 6_4:-7355997 | Msa0974360:three_prime_UTR |
| GGCTGATAATGACACACTTA+AGG | 0.472252 | 6_4:-7357936 | Msa0974360:CDS |
| TCACTCAATCAGGATATTGA+TGG | 0.479345 | 6_4:-7355987 | Msa0974360:three_prime_UTR |
| TGTTGATGAGGTGGAAAGGA+AGG | 0.483232 | 6_4:+7358665 | None:intergenic |
| GCTACAAACTCTAAAGAAAA+GGG | 0.493192 | 6_4:-7356419 | Msa0974360:CDS |
| GATCAATTATCAGATGAAGA+AGG | 0.500107 | 6_4:-7358196 | Msa0974360:CDS |
| ATGAGGTGGAAAGGAAGGAT+AGG | 0.501061 | 6_4:+7358670 | None:intergenic |
| AGCGAGCTATTTCTGACTGC+AGG | 0.513537 | 6_4:+7356015 | None:intergenic |
| AATGAAGGTTCTTGGAGCAA+TGG | 0.528783 | 6_4:-7356358 | Msa0974360:CDS |
| GTATAGCTATAAAGCCATAA+GGG | 0.536241 | 6_4:+7358861 | None:intergenic |
| CTCTATGCCTGAAAATGACA+TGG | 0.537665 | 6_4:+7358270 | None:intergenic |
| GCTGGTACTGATATGATGAT+AGG | 0.541839 | 6_4:+7359041 | None:intergenic |
| TTCCGTTAAGACTCGATGAA+AGG | 0.541939 | 6_4:-7356145 | Msa0974360:exon |
| GTGACAGAGTATTCAGAAAG+AGG | 0.542714 | 6_4:+7359014 | None:intergenic |
| GAAGAAGGGTACTCTCAAAT+GGG | 0.543097 | 6_4:-7358181 | Msa0974360:CDS |
| TAATATATAGTATAATATAG+AGG | 0.546588 | 6_4:+7358923 | None:intergenic |
| TATTCAGAAAGAGGGATGGC+TGG | 0.547505 | 6_4:+7359023 | None:intergenic |
| ATCAATTATCAGATGAAGAA+GGG | 0.550627 | 6_4:-7358195 | Msa0974360:CDS |
| GAGTTTGGCTCTCACTCTCA+TGG | 0.565301 | 6_4:+7358992 | None:intergenic |
| TGCAATTGGCTAAAGCTTTG+GGG | 0.570828 | 6_4:-7358069 | Msa0974360:CDS |
| GTCATTCGTTCAAGATTAGA+CGG | 0.571387 | 6_4:-7355965 | Msa0974360:three_prime_UTR |
| AACCATATAGCTACTTGTCT+AGG | 0.577432 | 6_4:+7358040 | None:intergenic |
| AAGATGAAAGTATGAGAAGG+TGG | 0.578267 | 6_4:+7358755 | None:intergenic |
| TATTAGAATTATTCATGCAA+AGG | 0.590726 | 6_4:+7358839 | None:intergenic |
| TAGAGAGAGAGAATAAGGAG+AGG | 0.593214 | 6_4:+7359103 | None:intergenic |
| ATTGTAGGTAGTGGAAGTAA+TGG | 0.594104 | 6_4:-7358319 | Msa0974360:intron |
| ATTTCTGACTGCAGGAGAGT+CGG | 0.595893 | 6_4:+7356023 | None:intergenic |
| AAATGGGTGAAAAGAAGAAG+AGG | 0.596172 | 6_4:-7358165 | Msa0974360:CDS |
| TGAAAGATGAAAGTATGAGA+AGG | 0.596872 | 6_4:+7358752 | None:intergenic |
| CCTTGAAAGTGTTGATGAGG+TGG | 0.603326 | 6_4:+7358656 | None:intergenic |
| AAACAACAAATTACATGCAG+AGG | 0.604512 | 6_4:-7357909 | Msa0974360:intron |
| AATCTATTTGAGTCATGAAG+AGG | 0.607100 | 6_4:-7355698 | Msa0974360:three_prime_UTR |
| CACATTCGAAATATCGATGG+TGG | 0.611637 | 6_4:+7355867 | None:intergenic |
| GTAGGTAGTGGAAGTAATGG+TGG | 0.615975 | 6_4:-7358316 | Msa0974360:intron |
| TGACAGAGTATTCAGAAAGA+GGG | 0.620131 | 6_4:+7359015 | None:intergenic |
| ATGAGAAGGTGGAAAAGCCA+TGG | 0.623402 | 6_4:+7358766 | None:intergenic |
| CTATTTGAGTCATGAAGAGG+TGG | 0.625626 | 6_4:-7355695 | Msa0974360:three_prime_UTR |
| TCCGATTATCCAAACAAATG+CGG | 0.635432 | 6_4:+7355901 | None:intergenic |
| TCACACATTCGAAATATCGA+TGG | 0.638630 | 6_4:+7355864 | None:intergenic |
| TGACCTTGAAAGTGTTGATG+AGG | 0.642298 | 6_4:+7358653 | None:intergenic |
| GGTTCCAAAATAGAAGAGCA+AGG | 0.645595 | 6_4:-7358021 | Msa0974360:CDS |
| AAAGTGTTGATGAGGTGGAA+AGG | 0.650161 | 6_4:+7358661 | None:intergenic |
| AGAGTATTCAGAAAGAGGGA+TGG | 0.662604 | 6_4:+7359019 | None:intergenic |
| AAGTGTGATGAATTAGTGCA+TGG | 0.667963 | 6_4:-7358226 | Msa0974360:CDS |
| TGTTGCTGATGATCAGTCCA+AGG | 0.684041 | 6_4:+7356172 | None:intergenic |
| GAAAGGATTTCGATCAGACG+CGG | 0.700592 | 6_4:-7356128 | Msa0974360:three_prime_UTR |
| TCCAAAATAGAAGAGCAAGG+TGG | 0.719995 | 6_4:-7358018 | Msa0974360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATATAGTATAATATAG+AGG | + | chr6_4:7355803-7355822 | None:intergenic | 10.0% |
| !!! | GATTAATAAATTGTATTTTT+TGG | - | chr6_4:7357211-7357230 | Msa0974360:intron | 10.0% |
| !! | ATCAAAATAAAATAAAAGTT+TGG | + | chr6_4:7357480-7357499 | None:intergenic | 10.0% |
| !! | TAAAATATTAGATTTGAATT+TGG | + | chr6_4:7358785-7358804 | None:intergenic | 10.0% |
| !! | TGATAATATAACAAATATTG+AGG | + | chr6_4:7356226-7356245 | None:intergenic | 15.0% |
| !!! | TGAAAAACTAATCTTAATTT+TGG | + | chr6_4:7356318-7356337 | None:intergenic | 15.0% |
| !!! | TTTTTTTTGTTTGTTATTGT+AGG | - | chr6_4:7356389-7356408 | Msa0974360:CDS | 15.0% |
| !!! | ATTAGTCATTTTCAATAAAA+TGG | - | chr6_4:7357071-7357090 | Msa0974360:intron | 15.0% |
| !! | AAGAATAAAAAATTGGATAT+TGG | + | chr6_4:7357185-7357204 | None:intergenic | 15.0% |
| !!! | ATTGTATTTTTTGGAAATAA+AGG | - | chr6_4:7357220-7357239 | Msa0974360:intron | 15.0% |
| !! | TAATTTGAATTAGTTATAAG+AGG | - | chr6_4:7357539-7357558 | Msa0974360:intron | 15.0% |
| !! | TCTTTAAATCATTTATATTG+CGG | + | chr6_4:7358110-7358129 | None:intergenic | 15.0% |
| !! | ATTATATGATTGTATGTATA+TGG | + | chr6_4:7358226-7358245 | None:intergenic | 15.0% |
| !!! | ATTTTTAAACCAAGTTAAAA+AGG | - | chr6_4:7358635-7358654 | Msa0974360:intron | 15.0% |
| !! | TATTAGAATTATTCATGCAA+AGG | + | chr6_4:7355887-7355906 | None:intergenic | 20.0% |
| !!! | AATCAAGAAAGAAATTTTAG+AGG | + | chr6_4:7356968-7356987 | None:intergenic | 20.0% |
| !! | AAAGAAGACTTTGATTAATT+TGG | - | chr6_4:7357019-7357038 | Msa0974360:intron | 20.0% |
| !! | CATCTTCAAGAATAAAAAAT+TGG | + | chr6_4:7357192-7357211 | None:intergenic | 20.0% |
| !! | GTTAATTACACATTCATTAT+TGG | + | chr6_4:7357426-7357445 | None:intergenic | 20.0% |
| !!! | AGACCTCTAAAAAATTTATA+TGG | - | chr6_4:7358007-7358026 | Msa0974360:CDS | 20.0% |
| !!! | TGTATTTTCCTGTAATATAA+AGG | - | chr6_4:7358163-7358182 | Msa0974360:CDS | 20.0% |
| !!! | CATTTTATCCCTAAATTATT+CGG | + | chr6_4:7358905-7358924 | None:intergenic | 20.0% |
| !! | AAAGAAAAAAGAAACTGATA+GGG | + | chr6_4:7358965-7358984 | None:intergenic | 20.0% |
| !! | GCAAAAATAAAATAGTGTAA+AGG | + | chr6_4:7359082-7359101 | None:intergenic | 20.0% |
| !! | GAATGATTTAAGAGAGTTTT+TGG | + | chr6_4:7355764-7355783 | None:intergenic | 25.0% |
| ! | AGAAGAAAAAGAAAAGGATA+TGG | + | chr6_4:7355927-7355946 | None:intergenic | 25.0% |
| ! | AGTTGAAGAAGAAAAAGAAA+AGG | + | chr6_4:7355933-7355952 | None:intergenic | 25.0% |
| !! | TAACACACAAGAAAAAGTTT+TGG | + | chr6_4:7356098-7356117 | None:intergenic | 25.0% |
| !! | AAATATTGAGGTTTTCACAA+CGG | + | chr6_4:7356214-7356233 | None:intergenic | 25.0% |
| ! | ATCAATTATCAGATGAAGAA+GGG | - | chr6_4:7356528-7356547 | Msa0974360:intron | 25.0% |
| !! | ACTTTGATTAATTTGGATCT+TGG | - | chr6_4:7357026-7357045 | Msa0974360:intron | 25.0% |
| ! | GGAAAATATGAAAAACTATG+AGG | + | chr6_4:7357285-7357304 | None:intergenic | 25.0% |
| ! | AAATCAAAGTCTATATCAAG+GGG | + | chr6_4:7357307-7357326 | None:intergenic | 25.0% |
| ! | CAAATCAAAGTCTATATCAA+GGG | + | chr6_4:7357308-7357327 | None:intergenic | 25.0% |
| ! | TCAAATCAAAGTCTATATCA+AGG | + | chr6_4:7357309-7357328 | None:intergenic | 25.0% |
| ! | TAAATGATTAAAACCTTCAG+TGG | + | chr6_4:7357378-7357397 | None:intergenic | 25.0% |
| ! | ATTGAGCTTTCTTAGTAAAT+AGG | + | chr6_4:7357585-7357604 | None:intergenic | 25.0% |
| ! | ATTGTTAGTTGATCATTCAT+AGG | - | chr6_4:7357687-7357706 | Msa0974360:intron | 25.0% |
| !! | CATACCATGATTTTAAATTG+CGG | - | chr6_4:7357890-7357909 | Msa0974360:intron | 25.0% |
| !! | TTTTCTGAGCTTTTATATTG+CGG | - | chr6_4:7357934-7357953 | Msa0974360:CDS | 25.0% |
| !!! | GTGCCATATAAATTTTTTAG+AGG | + | chr6_4:7358013-7358032 | None:intergenic | 25.0% |
| !! | TGATTTAAAGATTTTCGCAA+CGG | - | chr6_4:7358119-7358138 | Msa0974360:CDS | 25.0% |
| !!! | AACCTTCATTTTCTTTTTTG+AGG | + | chr6_4:7358355-7358374 | None:intergenic | 25.0% |
| ! | AAAAAGAAAATGAAGGTTCT+TGG | - | chr6_4:7358357-7358376 | Msa0974360:intron | 25.0% |
| !!! | GTAATTCATCCTTTTTAACT+TGG | + | chr6_4:7358647-7358666 | None:intergenic | 25.0% |
| ! | GTGAACATCAATGAATATTT+CGG | - | chr6_4:7358675-7358694 | Msa0974360:CDS | 25.0% |
| ! | AATAAAATTCCGCATTTGTT+TGG | - | chr6_4:7358813-7358832 | Msa0974360:five_prime_UTR | 25.0% |
| ! | ATTTGGATTCCGAATAATTT+AGG | - | chr6_4:7358893-7358912 | Msa0974360:five_prime_UTR | 25.0% |
| ! | TTTGGATTCCGAATAATTTA+GGG | - | chr6_4:7358894-7358913 | Msa0974360:five_prime_UTR | 25.0% |
| ! | GAAAGAAAAAAGAAACTGAT+AGG | + | chr6_4:7358966-7358985 | None:intergenic | 25.0% |
| ! | CAATTTATGTTTGTGTAGAT+TGG | - | chr6_4:7358985-7359004 | Msa0974360:five_prime_UTR | 25.0% |
| GTATAGCTATAAAGCCATAA+GGG | + | chr6_4:7355865-7355884 | None:intergenic | 30.0% | |
| ! | TGAAAGATGAAAGTATGAGA+AGG | + | chr6_4:7355974-7355993 | None:intergenic | 30.0% |
| AAAAGTTTGCAACGTAACTT+CGG | + | chr6_4:7356143-7356162 | None:intergenic | 30.0% | |
| ! | GCAATTTAAAACCATGACAA+CGG | - | chr6_4:7356255-7356274 | Msa0974360:CDS | 30.0% |
| !! | TTGTTTGTTATTGTAGGTAG+TGG | - | chr6_4:7356395-7356414 | Msa0974360:CDS | 30.0% |
| GATCAATTATCAGATGAAGA+AGG | - | chr6_4:7356527-7356546 | Msa0974360:intron | 30.0% | |
| !!! | CTTGAGAAGAATTTTGAGAT+TGG | - | chr6_4:7356605-7356624 | Msa0974360:intron | 30.0% |
| GAAGCAATTTGATTCTCTTA+AGG | - | chr6_4:7356766-7356785 | Msa0974360:intron | 30.0% | |
| AAACAACAAATTACATGCAG+AGG | - | chr6_4:7356814-7356833 | Msa0974360:intron | 30.0% | |
| ! | TTGATTAATTTGGATCTTGG+TGG | - | chr6_4:7357029-7357048 | Msa0974360:intron | 30.0% |
| ! | AGAAGACTTTTCTTTCACTT+TGG | - | chr6_4:7357244-7357263 | Msa0974360:intron | 30.0% |
| AATCAAAGTCTATATCAAGG+GGG | + | chr6_4:7357306-7357325 | None:intergenic | 30.0% | |
| ATTTGATGTGTGTTTGTGAA+TGG | - | chr6_4:7357323-7357342 | Msa0974360:intron | 30.0% | |
| AAAAGTCATAAAGACCATGT+GGG | + | chr6_4:7357628-7357647 | None:intergenic | 30.0% | |
| AAAAAGTCATAAAGACCATG+TGG | + | chr6_4:7357629-7357648 | None:intergenic | 30.0% | |
| GAATGATCAACTAACAATCA+AGG | + | chr6_4:7357685-7357704 | None:intergenic | 30.0% | |
| CACTATTAAATTTGCAGTTC+TGG | + | chr6_4:7357733-7357752 | None:intergenic | 30.0% | |
| ATGTTGCTATGAAAAAGACA+AGG | - | chr6_4:7357797-7357816 | Msa0974360:intron | 30.0% | |
| ! | ATGATTTTAAATTGCGGTTG+CGG | - | chr6_4:7357896-7357915 | Msa0974360:intron | 30.0% |
| TTTATATTGCGGTAAAATGC+TGG | - | chr6_4:7357945-7357964 | Msa0974360:CDS | 30.0% | |
| TTTGTCTATGACTATAGTTG+CGG | + | chr6_4:7358036-7358055 | None:intergenic | 30.0% | |
| GTTGCAAACCTTTATATTAC+AGG | + | chr6_4:7358174-7358193 | None:intergenic | 30.0% | |
| ATGTATATGGTTTCAAATCG+AGG | + | chr6_4:7358213-7358232 | None:intergenic | 30.0% | |
| CATGAAGACCTTACTATATA+TGG | - | chr6_4:7358273-7358292 | Msa0974360:CDS | 30.0% | |
| TGCAAACACCATATATAGTA+AGG | + | chr6_4:7358284-7358303 | None:intergenic | 30.0% | |
| ! | AGCTACAAACTCTAAAGAAA+AGG | - | chr6_4:7358303-7358322 | Msa0974360:CDS | 30.0% |
| ! | GCTACAAACTCTAAAGAAAA+GGG | - | chr6_4:7358304-7358323 | Msa0974360:CDS | 30.0% |
| !!! | AAAAGGGACTGTTTTGAAAA+TGG | - | chr6_4:7358320-7358339 | Msa0974360:intron | 30.0% |
| AGCCTCAAAAAAGAAAATGA+AGG | - | chr6_4:7358350-7358369 | Msa0974360:intron | 30.0% | |
| GTGTGAATACAACATGAATT+TGG | - | chr6_4:7358876-7358895 | Msa0974360:five_prime_UTR | 30.0% | |
| AAGAAACTGATAGGGAAAAA+AGG | + | chr6_4:7358957-7358976 | None:intergenic | 30.0% | |
| AATCTATTTGAGTCATGAAG+AGG | - | chr6_4:7359025-7359044 | Msa0974360:five_prime_UTR | 30.0% | |
| ACAGATAGAGAGAGAGAATA+AGG | + | chr6_4:7355628-7355647 | None:intergenic | 35.0% | |
| ! | TGACAGAGTATTCAGAAAGA+GGG | + | chr6_4:7355711-7355730 | None:intergenic | 35.0% |
| !! | GTTTTTGGATCAGAAGAGTT+TGG | + | chr6_4:7355749-7355768 | None:intergenic | 35.0% |
| GAAACAGAAAATGACCCTTA+TGG | - | chr6_4:7355848-7355867 | Msa0974360:three_prime_UTR | 35.0% | |
| GGTATAGCTATAAAGCCATA+AGG | + | chr6_4:7355866-7355885 | None:intergenic | 35.0% | |
| TTCTTCTTCAACTTCTACCA+TGG | - | chr6_4:7355940-7355959 | Msa0974360:three_prime_UTR | 35.0% | |
| ! | AAGATGAAAGTATGAGAAGG+TGG | + | chr6_4:7355971-7355990 | None:intergenic | 35.0% |
| ! | AATCGCAATTTTGAGCACAT+CGG | + | chr6_4:7356185-7356204 | None:intergenic | 35.0% |
| !! | ATTGTAGGTAGTGGAAGTAA+TGG | - | chr6_4:7356404-7356423 | Msa0974360:CDS | 35.0% |
| !!! | AAGAGATCCATGTCATTTTC+AGG | - | chr6_4:7356446-7356465 | Msa0974360:intron | 35.0% |
| AAGTGTGATGAATTAGTGCA+TGG | - | chr6_4:7356497-7356516 | Msa0974360:intron | 35.0% | |
| AAATGGGTGAAAAGAAGAAG+AGG | - | chr6_4:7356558-7356577 | Msa0974360:intron | 35.0% | |
| ACCTGAGAGAAAAATGCAAT+TGG | - | chr6_4:7356640-7356659 | Msa0974360:intron | 35.0% | |
| AATGCAATTGGCTAAAGCTT+TGG | - | chr6_4:7356652-7356671 | Msa0974360:intron | 35.0% | |
| ATGCAATTGGCTAAAGCTTT+GGG | - | chr6_4:7356653-7356672 | Msa0974360:intron | 35.0% | |
| AACCTAGACAAGTAGCTATA+TGG | - | chr6_4:7356681-7356700 | Msa0974360:intron | 35.0% | |
| AACCATATAGCTACTTGTCT+AGG | + | chr6_4:7356686-7356705 | None:intergenic | 35.0% | |
| CACATTCATTATTGGAGACA+AGG | + | chr6_4:7357418-7357437 | None:intergenic | 35.0% | |
| GATTTAGTTATGATCCCACA+TGG | - | chr6_4:7357611-7357630 | Msa0974360:intron | 35.0% | |
| TTAGTACATAGTTGTCCACA+TGG | - | chr6_4:7357835-7357854 | Msa0974360:intron | 35.0% | |
| ! | GCAACCGCAATTTAAAATCA+TGG | + | chr6_4:7357897-7357916 | None:intergenic | 35.0% |
| TTGTCTATGACTATAGTTGC+GGG | + | chr6_4:7358035-7358054 | None:intergenic | 35.0% | |
| TCAAATCGAGGTCAAAATTG+TGG | + | chr6_4:7358201-7358220 | None:intergenic | 35.0% | |
| !! | GTGAATTTGGTGTTCTAGAA+AGG | + | chr6_4:7358421-7358440 | None:intergenic | 35.0% |
| CTTGTAGGCTTAAGTGAATT+TGG | + | chr6_4:7358434-7358453 | None:intergenic | 35.0% | |
| ATCCTTTCATCGAGTCTTAA+CGG | + | chr6_4:7358583-7358602 | None:intergenic | 35.0% | |
| TCACTCAATCAGGATATTGA+TGG | - | chr6_4:7358736-7358755 | Msa0974360:CDS | 35.0% | |
| GTCATTCGTTCAAGATTAGA+CGG | - | chr6_4:7358758-7358777 | Msa0974360:CDS | 35.0% | |
| TCCGCATTTGTTTGGATAAT+CGG | - | chr6_4:7358821-7358840 | Msa0974360:five_prime_UTR | 35.0% | |
| TCCGATTATCCAAACAAATG+CGG | + | chr6_4:7358825-7358844 | None:intergenic | 35.0% | |
| TCACACATTCGAAATATCGA+TGG | + | chr6_4:7358862-7358881 | None:intergenic | 35.0% | |
| ! | AGGTACAGACAGCGATTTTT+AGG | + | chr6_4:7355665-7355684 | None:intergenic | 40.0% |
| !! | GCTGGTACTGATATGATGAT+AGG | + | chr6_4:7355685-7355704 | None:intergenic | 40.0% |
| ! | AGAGTATTCAGAAAGAGGGA+TGG | + | chr6_4:7355707-7355726 | None:intergenic | 40.0% |
| ! | GTGACAGAGTATTCAGAAAG+AGG | + | chr6_4:7355712-7355731 | None:intergenic | 40.0% |
| !! | AAAGTGTTGATGAGGTGGAA+AGG | + | chr6_4:7356065-7356084 | None:intergenic | 40.0% |
| !! | TGACCTTGAAAGTGTTGATG+AGG | + | chr6_4:7356073-7356092 | None:intergenic | 40.0% |
| CTCTATGCCTGAAAATGACA+TGG | + | chr6_4:7356456-7356475 | None:intergenic | 40.0% | |
| !! | TGAAGAAGGGTACTCTCAAA+TGG | - | chr6_4:7356541-7356560 | Msa0974360:intron | 40.0% |
| !! | GAAGAAGGGTACTCTCAAAT+GGG | - | chr6_4:7356542-7356561 | Msa0974360:intron | 40.0% |
| ! | GCCAATTGCATTTTTCTCTC+AGG | + | chr6_4:7356644-7356663 | None:intergenic | 40.0% |
| TGCAATTGGCTAAAGCTTTG+GGG | - | chr6_4:7356654-7356673 | Msa0974360:intron | 40.0% | |
| GGTTCCAAAATAGAAGAGCA+AGG | - | chr6_4:7356702-7356721 | Msa0974360:intron | 40.0% | |
| TCCAAAATAGAAGAGCAAGG+TGG | - | chr6_4:7356705-7356724 | Msa0974360:intron | 40.0% | |
| ! | TCCACCTTGCTCTTCTATTT+TGG | + | chr6_4:7356709-7356728 | None:intergenic | 40.0% |
| ! | GGCTGATAATGACACACTTA+AGG | - | chr6_4:7356787-7356806 | Msa0974360:intron | 40.0% |
| TGATTAAAACCTTCAGTGGC+AGG | + | chr6_4:7357374-7357393 | None:intergenic | 40.0% | |
| AATGAAGGTTCTTGGAGCAA+TGG | - | chr6_4:7358365-7358384 | Msa0974360:intron | 40.0% | |
| !! | CTGATCTTGAAGAGCATTGA+AGG | + | chr6_4:7358469-7358488 | None:intergenic | 40.0% |
| TTGATGAGCAGCAGAGTTTA+TGG | - | chr6_4:7358528-7358547 | Msa0974360:intron | 40.0% | |
| TCATCGAGTCTTAACGGAAT+TGG | + | chr6_4:7358577-7358596 | None:intergenic | 40.0% | |
| TTCCGTTAAGACTCGATGAA+AGG | - | chr6_4:7358578-7358597 | Msa0974360:intron | 40.0% | |
| CACATTCGAAATATCGATGG+TGG | + | chr6_4:7358859-7358878 | None:intergenic | 40.0% | |
| CTATTTGAGTCATGAAGAGG+TGG | - | chr6_4:7359028-7359047 | Msa0974360:five_prime_UTR | 40.0% | |
| TATTCAGAAAGAGGGATGGC+TGG | + | chr6_4:7355703-7355722 | None:intergenic | 45.0% | |
| ATGAGAAGGTGGAAAAGCCA+TGG | + | chr6_4:7355960-7355979 | None:intergenic | 45.0% | |
| ATGAGGTGGAAAGGAAGGAT+AGG | + | chr6_4:7356056-7356075 | None:intergenic | 45.0% | |
| ! | TGTTGATGAGGTGGAAAGGA+AGG | + | chr6_4:7356061-7356080 | None:intergenic | 45.0% |
| !! | CCTTGAAAGTGTTGATGAGG+TGG | + | chr6_4:7356070-7356089 | None:intergenic | 45.0% |
| CCACCTCATCAACACTTTCA+AGG | - | chr6_4:7356067-7356086 | Msa0974360:three_prime_UTR | 45.0% | |
| !! | GTAGGTAGTGGAAGTAATGG+TGG | - | chr6_4:7356407-7356426 | Msa0974360:CDS | 45.0% |
| ! | ACAAGTTTTCCTGCCACTGA+AGG | - | chr6_4:7357362-7357381 | Msa0974360:intron | 45.0% |
| !! | AGTTCTGGATTCTGACACAC+TGG | + | chr6_4:7357718-7357737 | None:intergenic | 45.0% |
| GTCCACATGGATGCATATGA+AGG | - | chr6_4:7357848-7357867 | Msa0974360:intron | 45.0% | |
| CACCTTCATATGCATCCATG+TGG | + | chr6_4:7357853-7357872 | None:intergenic | 45.0% | |
| CACATGGATGCATATGAAGG+TGG | - | chr6_4:7357851-7357870 | Msa0974360:intron | 45.0% | |
| CTCTCGTAGCATCACAATTG+CGG | + | chr6_4:7357989-7358008 | None:intergenic | 45.0% | |
| AGGAGCTGTGTCATACTTGT+AGG | + | chr6_4:7358449-7358468 | None:intergenic | 45.0% | |
| TGTTGCTGATGATCAGTCCA+AGG | + | chr6_4:7358554-7358573 | None:intergenic | 45.0% | |
| GAAAGGATTTCGATCAGACG+CGG | - | chr6_4:7358595-7358614 | Msa0974360:intron | 45.0% | |
| ATTTCTGACTGCAGGAGAGT+CGG | + | chr6_4:7358703-7358722 | None:intergenic | 45.0% | |
| TCGCTTTCACTCACTCAATC+AGG | - | chr6_4:7358726-7358745 | Msa0974360:CDS | 45.0% | |
| !!! | TTAAAAATTTCATTTTAAAT+CGG | + | chr6_4:7358623-7358642 | None:intergenic | 5.0% |
| !! | GAGTTTGGCTCTCACTCTCA+TGG | + | chr6_4:7355734-7355753 | None:intergenic | 50.0% |
| AGCAGCAGAGTTTATGGCCT+TGG | - | chr6_4:7358534-7358553 | Msa0974360:intron | 50.0% | |
| !! | AGCGAGCTATTTCTGACTGC+AGG | + | chr6_4:7358711-7358730 | None:intergenic | 50.0% |
| GAGAGACGATGCCGTTGTCA+TGG | + | chr6_4:7356269-7356288 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 7355623 | 7359122 | 7355623 | ID=Msa0974360;Name=Msa0974360 |
| chr6_4 | mRNA | 7355623 | 7359122 | 7355623 | ID=Msa0974360-mRNA-1;Parent=Msa0974360;Name=Msa0974360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=336|1|1|1|1|1|3|536|278 |
| chr6_4 | exon | 7355623 | 7356440 | 7355623 | ID=Msa0974360-mRNA-1:exon:2875;Parent=Msa0974360-mRNA-1 |
| chr6_4 | exon | 7357910 | 7358334 | 7357910 | ID=Msa0974360-mRNA-1:exon:2874;Parent=Msa0974360-mRNA-1 |
| chr6_4 | exon | 7358657 | 7359122 | 7358657 | ID=Msa0974360-mRNA-1:exon:2873;Parent=Msa0974360-mRNA-1 |
| chr6_4 | five_prime_UTR | 7358787 | 7359122 | 7358787 | ID=Msa0974360-mRNA-1:five_prime_utr;Parent=Msa0974360-mRNA-1 |
| chr6_4 | CDS | 7358657 | 7358786 | 7358657 | ID=Msa0974360-mRNA-1:cds;Parent=Msa0974360-mRNA-1 |
| chr6_4 | CDS | 7357910 | 7358334 | 7357910 | ID=Msa0974360-mRNA-1:cds;Parent=Msa0974360-mRNA-1 |
| chr6_4 | CDS | 7356159 | 7356440 | 7356159 | ID=Msa0974360-mRNA-1:cds;Parent=Msa0974360-mRNA-1 |
| chr6_4 | three_prime_UTR | 7355623 | 7356158 | 7355623 | ID=Msa0974360-mRNA-1:three_prime_utr;Parent=Msa0974360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
