Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977960 | RHN50388.1 | 91.271 | 779 | 64 | 3 | 1 | 778 | 1 | 776 | 0.0 | 1465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977960 | sp|Q6YXY2|HACL1_ORYSJ | 47.724 | 769 | 348 | 13 | 46 | 775 | 904 | 1657 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977960 | A0A396HCL0 | 91.271 | 779 | 64 | 3 | 1 | 778 | 1 | 776 | 0.0 | 1465 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0977960 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977960 | MtrunA17_Chr6g0456861 | 91.271 | 779 | 64 | 3 | 1 | 778 | 1 | 776 | 0.0 | 1465 |
| Msa0977960 | MtrunA17_Chr5g0438991 | 83.983 | 718 | 100 | 7 | 58 | 765 | 246 | 958 | 0.0 | 1231 |
| Msa0977960 | MtrunA17_Chr3g0138411 | 70.889 | 821 | 173 | 11 | 22 | 778 | 388 | 1206 | 0.0 | 1169 |
| Msa0977960 | MtrunA17_Chr3g0133461 | 67.832 | 858 | 185 | 14 | 2 | 778 | 496 | 1343 | 0.0 | 1133 |
| Msa0977960 | MtrunA17_Chr4g0000031 | 46.617 | 798 | 336 | 15 | 55 | 775 | 913 | 1697 | 0.0 | 708 |
| Msa0977960 | MtrunA17_Chr6g0456851 | 63.747 | 491 | 152 | 9 | 59 | 529 | 349 | 833 | 0.0 | 611 |
| Msa0977960 | MtrunA17_Chr6g0456851 | 73.770 | 61 | 15 | 1 | 584 | 644 | 820 | 879 | 8.04e-19 | 91.7 |
| Msa0977960 | MtrunA17_Chr6g0456931 | 71.020 | 245 | 63 | 2 | 251 | 487 | 1 | 245 | 7.69e-120 | 360 |
| Msa0977960 | MtrunA17_Chr5g0401991 | 77.056 | 231 | 41 | 3 | 472 | 700 | 1 | 221 | 1.66e-114 | 345 |
| Msa0977960 | MtrunA17_Chr5g0402001 | 85.149 | 101 | 14 | 1 | 322 | 421 | 1 | 101 | 3.79e-53 | 179 |
| Msa0977960 | MtrunA17_Chr5g0439001 | 80.851 | 94 | 18 | 0 | 423 | 516 | 1 | 94 | 3.09e-44 | 155 |
| Msa0977960 | MtrunA17_Chr6g0456921 | 46.951 | 164 | 29 | 4 | 322 | 484 | 1 | 107 | 2.02e-33 | 131 |
| Msa0977960 | MtrunA17_Chr1g0169961 | 71.084 | 83 | 23 | 1 | 58 | 140 | 87 | 168 | 3.04e-31 | 120 |
| Msa0977960 | MtrunA17_Chr6g0456911 | 90.741 | 54 | 5 | 0 | 584 | 637 | 7 | 60 | 9.01e-27 | 103 |
| Msa0977960 | MtrunA17_Chr0c02g0489811 | 87.719 | 57 | 7 | 0 | 581 | 637 | 5 | 61 | 5.13e-26 | 102 |
| Msa0977960 | MtrunA17_Chr7g0229221 | 84.211 | 57 | 9 | 0 | 581 | 637 | 5 | 61 | 8.96e-25 | 98.6 |
| Msa0977960 | MtrunA17_Chr0c02g0489731 | 80.702 | 57 | 11 | 0 | 581 | 637 | 5 | 61 | 2.80e-23 | 94.4 |
| Msa0977960 | MtrunA17_Chr0c02g0489721 | 89.362 | 47 | 5 | 0 | 511 | 557 | 1 | 47 | 3.24e-23 | 93.2 |
| Msa0977960 | MtrunA17_Chr7g0229231 | 89.362 | 47 | 5 | 0 | 511 | 557 | 1 | 47 | 3.24e-23 | 93.2 |
| Msa0977960 | MtrunA17_Chr0c02g0489821 | 91.111 | 45 | 4 | 0 | 513 | 557 | 1 | 45 | 2.46e-22 | 90.5 |
| Msa0977960 | MtrunA17_Chr6g0456781 | 63.492 | 63 | 20 | 1 | 112 | 174 | 25 | 84 | 3.57e-17 | 79.0 |
| Msa0977960 | MtrunA17_Chr5g0402011 | 96.774 | 31 | 1 | 0 | 177 | 207 | 21 | 51 | 6.71e-15 | 70.5 |
| Msa0977960 | MtrunA17_Chr5g0401281 | 38.889 | 72 | 43 | 1 | 694 | 764 | 279 | 350 | 1.01e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0977960 | AT1G79000.1 | 46.106 | 796 | 345 | 14 | 54 | 775 | 900 | 1685 | 0.0 | 717 |
| Msa0977960 | AT1G79000.2 | 46.106 | 796 | 345 | 14 | 54 | 775 | 900 | 1685 | 0.0 | 717 |
| Msa0977960 | AT1G79000.3 | 46.106 | 796 | 345 | 14 | 54 | 775 | 876 | 1661 | 0.0 | 716 |
| Msa0977960 | AT1G16710.2 | 46.532 | 793 | 345 | 16 | 55 | 775 | 880 | 1665 | 0.0 | 702 |
| Msa0977960 | AT1G16710.3 | 46.532 | 793 | 345 | 16 | 55 | 775 | 883 | 1668 | 0.0 | 702 |
| Msa0977960 | AT1G16710.10 | 46.532 | 793 | 345 | 16 | 55 | 775 | 883 | 1668 | 0.0 | 702 |
| Msa0977960 | AT1G16710.8 | 46.532 | 793 | 345 | 16 | 55 | 775 | 883 | 1668 | 0.0 | 702 |
| Msa0977960 | AT1G16710.7 | 46.532 | 793 | 345 | 16 | 55 | 775 | 883 | 1668 | 0.0 | 702 |
| Msa0977960 | AT1G16710.6 | 46.532 | 793 | 345 | 16 | 55 | 775 | 844 | 1629 | 0.0 | 702 |
| Msa0977960 | AT1G16710.4 | 46.532 | 793 | 345 | 16 | 55 | 775 | 844 | 1629 | 0.0 | 702 |
| Msa0977960 | AT1G16710.1 | 46.532 | 793 | 345 | 16 | 55 | 775 | 909 | 1694 | 0.0 | 702 |
| Msa0977960 | AT1G16710.5 | 46.532 | 793 | 345 | 16 | 55 | 775 | 844 | 1629 | 0.0 | 702 |
| Msa0977960 | AT3G12980.1 | 45.663 | 784 | 349 | 16 | 58 | 775 | 885 | 1657 | 0.0 | 685 |
| Msa0977960 | AT3G12980.2 | 45.663 | 784 | 349 | 16 | 58 | 775 | 804 | 1576 | 0.0 | 684 |
| Msa0977960 | AT1G67220.1 | 42.950 | 773 | 358 | 17 | 56 | 756 | 602 | 1363 | 0.0 | 606 |
| Msa0977960 | AT1G55970.1 | 41.550 | 787 | 381 | 12 | 60 | 775 | 681 | 1459 | 0.0 | 602 |
| Msa0977960 | AT1G55970.2 | 41.677 | 787 | 366 | 13 | 60 | 775 | 681 | 1445 | 0.0 | 597 |
| Msa0977960 | AT1G16710.9 | 50.929 | 538 | 237 | 10 | 55 | 567 | 883 | 1418 | 9.15e-177 | 546 |
| Msa0977960 | AT5G67480.1 | 39.080 | 87 | 51 | 2 | 692 | 777 | 271 | 356 | 3.88e-12 | 69.3 |
| Msa0977960 | AT5G67480.3 | 39.080 | 87 | 51 | 2 | 692 | 777 | 271 | 356 | 3.88e-12 | 69.3 |
| Msa0977960 | AT5G67480.2 | 39.080 | 87 | 51 | 2 | 692 | 777 | 282 | 367 | 3.90e-12 | 69.3 |
Find 119 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCGAGTCTTTGCAATTTC+TGG | 0.071145 | 6_4:-12868171 | None:intergenic |
| TACTAATATGTTCTTCTATT+TGG | 0.118199 | 6_4:-12864976 | None:intergenic |
| CTCTTGTAGGCAATATATTT+TGG | 0.161705 | 6_4:-12867247 | None:intergenic |
| ACACTTGCAACCTATGTAAA+AGG | 0.199149 | 6_4:+12865336 | Msa0977960:CDS |
| GAAAGTGAATAAGCAGTTTC+TGG | 0.202627 | 6_4:+12866129 | Msa0977960:CDS |
| TAACGTTTGCGTACCATTTC+AGG | 0.204389 | 6_4:-12864884 | None:intergenic |
| AGAGTGGATTGTTTGAAAAT+AGG | 0.213298 | 6_4:+12867667 | Msa0977960:CDS |
| TTGATTCCGTCAAGTATTTC+AGG | 0.217147 | 6_4:+12866399 | Msa0977960:CDS |
| TGCCGTGAAGTGATAGTTTC+TGG | 0.256762 | 6_4:+12867311 | Msa0977960:CDS |
| GAGTGGATTGTTTGAAAATA+GGG | 0.257007 | 6_4:+12867668 | Msa0977960:CDS |
| GCACCAAAGTTAGCAGCTTT+TGG | 0.260444 | 6_4:-12865820 | None:intergenic |
| ATCAAGGAAACAGCAACTTT+TGG | 0.262039 | 6_4:-12864935 | None:intergenic |
| AGCTCGAATTTCACACTTAC+TGG | 0.290061 | 6_4:-12868096 | None:intergenic |
| TTGCATCACCAGTATGTCTT+TGG | 0.314513 | 6_4:-12867128 | None:intergenic |
| CTTTGTTTACCATGAGATAT+TGG | 0.319700 | 6_4:+12866460 | Msa0977960:CDS |
| GGAATGTATGTCCAGGAGTT+TGG | 0.324631 | 6_4:+12866329 | Msa0977960:CDS |
| TCAGGAGTCAAATGAGAAAA+TGG | 0.324783 | 6_4:+12867866 | Msa0977960:CDS |
| CTATAACAAGAAAGCAGATT+TGG | 0.325291 | 6_4:+12865732 | Msa0977960:CDS |
| GTTTCTCAACTTGCTACATA+TGG | 0.342725 | 6_4:+12866619 | Msa0977960:CDS |
| TGATTCCCAGATTGATATAC+TGG | 0.360737 | 6_4:-12867846 | None:intergenic |
| TTGCCGTAGAGCTGAAGTTT+TGG | 0.363294 | 6_4:+12868427 | Msa0977960:CDS |
| CTTCTGTTTCAGAAAATTGA+AGG | 0.379117 | 6_4:+12866287 | Msa0977960:CDS |
| TCTCGTTTGCCATACTTTGA+TGG | 0.385478 | 6_4:+12866977 | Msa0977960:CDS |
| AGTATATCAATCTGGGAATC+AGG | 0.385611 | 6_4:+12867848 | Msa0977960:CDS |
| TGGCGTAGCTTATCTTTCTT+CGG | 0.388075 | 6_4:-12866705 | None:intergenic |
| CCTCTTTGCAAGATTTCTCT+TGG | 0.395307 | 6_4:-12865531 | None:intergenic |
| TCAACACCAGTATATCAATC+TGG | 0.396643 | 6_4:+12867840 | Msa0977960:CDS |
| ATATATTCACAAAGATTCAT+TGG | 0.399198 | 6_4:-12868463 | None:intergenic |
| CACCAGTCTCCATCAAAGTA+TGG | 0.407484 | 6_4:-12866986 | None:intergenic |
| CAGCATTACTTGCGCGGCGG+CGG | 0.411023 | 6_4:-12868022 | None:intergenic |
| TGATGAAGTAATTGAAGAAC+CGG | 0.418960 | 6_4:+12865559 | Msa0977960:CDS |
| TCAGTAGGGTAATTCTCCTC+TGG | 0.420217 | 6_4:-12866160 | None:intergenic |
| ACACATTAGGATTGTGTAGA+TGG | 0.424071 | 6_4:-12867776 | None:intergenic |
| CTGAATTCTCTTATAGATCA+AGG | 0.429818 | 6_4:+12866179 | Msa0977960:CDS |
| ATGTATACACATCGCTGATT+CGG | 0.437115 | 6_4:-12866368 | None:intergenic |
| GGTGAAGATGTCAAAATCAA+TGG | 0.439241 | 6_4:+12865497 | Msa0977960:CDS |
| CACAGTTCTTGTCAAGTCCT+TGG | 0.448380 | 6_4:-12865842 | None:intergenic |
| GTTCCAAAAGCTGCTAACTT+TGG | 0.449417 | 6_4:+12865817 | Msa0977960:CDS |
| CAAGCCTTCCAAAGACATAC+TGG | 0.466131 | 6_4:+12867120 | Msa0977960:CDS |
| CAAACGAGAAACTGTCATCT+TGG | 0.470209 | 6_4:-12866963 | None:intergenic |
| AGGATGATACCTCCAGTCCT+TGG | 0.470956 | 6_4:-12864864 | None:intergenic |
| CGAGGTGCATACACTTTGTC+AGG | 0.471850 | 6_4:+12867507 | Msa0977960:CDS |
| CAGTATGTCTTTGGAAGGCT+TGG | 0.474548 | 6_4:-12867119 | None:intergenic |
| TTCTTGATTTGAGAACAGTT+TGG | 0.474837 | 6_4:-12868059 | None:intergenic |
| TATATAGAGTGCACAATGAA+TGG | 0.474840 | 6_4:+12868481 | Msa0977960:three_prime_UTR |
| TTTAGGCCTGAAATACTTGA+CGG | 0.475542 | 6_4:-12866405 | None:intergenic |
| GATCATCATGGAGGAATACT+TGG | 0.481567 | 6_4:-12867748 | None:intergenic |
| GTGAAGATGTCAAAATCAAT+GGG | 0.484351 | 6_4:+12865498 | Msa0977960:CDS |
| TTTCTCAACTTGCTACATAT+GGG | 0.487718 | 6_4:+12866620 | Msa0977960:CDS |
| AATGAAGAAAATATTGTCGT+TGG | 0.489418 | 6_4:+12866890 | Msa0977960:CDS |
| GCCGTGAAGTGATAGTTTCT+GGG | 0.489549 | 6_4:+12867312 | Msa0977960:CDS |
| CAAACTGTAACTGAGACTTC+TGG | 0.491241 | 6_4:-12867710 | None:intergenic |
| TCTGAGAAAGGAATCTGATC+AGG | 0.491907 | 6_4:+12865000 | Msa0977960:CDS |
| CTGGAGGTATCATCCTGAAA+TGG | 0.495745 | 6_4:+12864871 | Msa0977960:CDS |
| TCCCAGAAACTATCACTTCA+CGG | 0.498199 | 6_4:-12867313 | None:intergenic |
| GATCTATAAGAGAATTCAGT+AGG | 0.499651 | 6_4:-12866175 | None:intergenic |
| TGCCATACTTTGATGGAGAC+TGG | 0.505154 | 6_4:+12866984 | Msa0977960:CDS |
| CACTTGCAACCTATGTAAAA+GGG | 0.507975 | 6_4:+12865337 | Msa0977960:CDS |
| CAGTAGGGTAATTCTCCTCT+GGG | 0.517758 | 6_4:-12866159 | None:intergenic |
| CACATTCCGAGCCAAACTCC+TGG | 0.518027 | 6_4:-12866340 | None:intergenic |
| TTTAACACAGATTACTTCTG+AGG | 0.518241 | 6_4:+12865292 | Msa0977960:intron |
| CTCCAGAAATTGCAAAGACT+CGG | 0.519317 | 6_4:+12868169 | Msa0977960:CDS |
| ACATATTAGTAGTCTGAGAA+AGG | 0.521580 | 6_4:+12864988 | Msa0977960:CDS |
| AGCTGCTAACTTTGGTGCCA+AGG | 0.523742 | 6_4:+12865825 | Msa0977960:CDS |
| TGATGAAGTATTCCCACCCT+TGG | 0.527385 | 6_4:-12864780 | None:intergenic |
| AGTATTTCAGGCCTAAAAGA+AGG | 0.532937 | 6_4:+12866411 | Msa0977960:CDS |
| CAGGAGTTTGGCTCGGAATG+TGG | 0.533156 | 6_4:+12866341 | Msa0977960:CDS |
| GATGAATTAAGCAATCAAGT+AGG | 0.536338 | 6_4:+12864836 | Msa0977960:CDS |
| AGTGTCAAATAGAACAGTAA+AGG | 0.538963 | 6_4:+12867084 | Msa0977960:CDS |
| AATGTAGAATACCACGCTGC+AGG | 0.540083 | 6_4:+12868192 | Msa0977960:CDS |
| TCATTACATTTAGTGTCGGA+AGG | 0.542457 | 6_4:-12867633 | None:intergenic |
| CAACACCAGTATATCAATCT+GGG | 0.542971 | 6_4:+12867841 | Msa0977960:CDS |
| AAGTAGGATTCTCCAAGGAC+TGG | 0.543459 | 6_4:+12864852 | Msa0977960:CDS |
| ATCACCAGTATGTCTTTGGA+AGG | 0.545017 | 6_4:-12867124 | None:intergenic |
| AATGCAATAAATGCAAAAGA+TGG | 0.545817 | 6_4:+12865689 | Msa0977960:CDS |
| CCAAGAGAAATCTTGCAAAG+AGG | 0.547222 | 6_4:+12865531 | Msa0977960:CDS |
| TGATAGTTTCTGGGAAGCGT+TGG | 0.550391 | 6_4:+12867321 | Msa0977960:CDS |
| CTTCCAAAACTTCAGCTCTA+CGG | 0.553582 | 6_4:-12868430 | None:intergenic |
| TAGGATTGTGTAGATGGTAG+AGG | 0.554657 | 6_4:-12867770 | None:intergenic |
| GAAAATCACACTTTAAAGAA+CGG | 0.556132 | 6_4:+12867484 | Msa0977960:CDS |
| ACGTCTGAACGAATCAATCA+AGG | 0.557899 | 6_4:-12864951 | None:intergenic |
| GAAGAAGAATTTGTTGCACA+AGG | 0.565082 | 6_4:+12865440 | Msa0977960:CDS |
| TTTCAAACAATCCACTCTCA+AGG | 0.566291 | 6_4:-12867662 | None:intergenic |
| TGAATTCTCTTATAGATCAA+GGG | 0.573900 | 6_4:+12866180 | Msa0977960:CDS |
| AACGAGAAGATGCTTGCCAA+GGG | 0.580333 | 6_4:+12864764 | None:intergenic |
| CCTAAAAGAAGGACAAAGAG+TGG | 0.582381 | 6_4:+12866422 | Msa0977960:CDS |
| GAACAGTTTGGATGAGAGCA+TGG | 0.587828 | 6_4:-12868047 | None:intergenic |
| AGAAGATGCTTGCCAAGGGT+GGG | 0.592844 | 6_4:+12864768 | None:intergenic |
| GATATCATTACATTTAGTGT+CGG | 0.593014 | 6_4:-12867637 | None:intergenic |
| CTGGTGGTGCGGTAATGCTA+TGG | 0.593172 | 6_4:+12867003 | Msa0977960:CDS |
| AAACGAGAAGATGCTTGCCA+AGG | 0.601647 | 6_4:+12864763 | None:intergenic |
| GAGAAGATGCTTGCCAAGGG+TGG | 0.602246 | 6_4:+12864767 | None:intergenic |
| CATTACATTTAGTGTCGGAA+GGG | 0.603073 | 6_4:-12867632 | None:intergenic |
| AATGATATCGTCCTTGAGAG+TGG | 0.608339 | 6_4:+12867651 | Msa0977960:CDS |
| GTATGTCCAGGAGTTTGGCT+CGG | 0.620509 | 6_4:+12866334 | Msa0977960:CDS |
| ATGGTAAACAAAGGTACGAA+GGG | 0.622204 | 6_4:-12866450 | None:intergenic |
| AGAAAGATAAGCTACGCCAC+TGG | 0.623293 | 6_4:+12866709 | Msa0977960:CDS |
| ATTACTTCTGAGGATCAAGC+GGG | 0.627163 | 6_4:+12865302 | Msa0977960:CDS |
| CAATATCTCATGGTAAACAA+AGG | 0.628488 | 6_4:-12866459 | None:intergenic |
| TAGGATTCTCCAAGGACTGG+AGG | 0.631301 | 6_4:+12864855 | Msa0977960:CDS |
| ATCTATAAGAGAATTCAGTA+GGG | 0.634140 | 6_4:-12866174 | None:intergenic |
| CAATCAAGTAGGATTCTCCA+AGG | 0.638743 | 6_4:+12864847 | Msa0977960:CDS |
| CATGGTAAACAAAGGTACGA+AGG | 0.641848 | 6_4:-12866451 | None:intergenic |
| GATTACTTCTGAGGATCAAG+CGG | 0.645033 | 6_4:+12865301 | Msa0977960:intron |
| AAATAGAACAGTAAAGGACA+TGG | 0.650828 | 6_4:+12867090 | Msa0977960:CDS |
| AATAGAACAGTAAAGGACAT+GGG | 0.660656 | 6_4:+12867091 | Msa0977960:CDS |
| TAGATGGTAGAGGATCATCA+TGG | 0.661036 | 6_4:-12867760 | None:intergenic |
| TGGAGGAATACTTGGCACGA+CGG | 0.668087 | 6_4:-12867740 | None:intergenic |
| ATGGCTCAGCATTACTTGCG+CGG | 0.676392 | 6_4:-12868028 | None:intergenic |
| TGTGAAATTCGAGCTAATCG+AGG | 0.677098 | 6_4:+12868104 | Msa0977960:CDS |
| AAAGAAATGATCATACACGT+TGG | 0.679280 | 6_4:-12866918 | None:intergenic |
| CATACTTTGATGGAGACTGG+TGG | 0.703400 | 6_4:+12866987 | Msa0977960:CDS |
| TTTGATGGAGACTGGTGGTG+CGG | 0.706712 | 6_4:+12866992 | Msa0977960:CDS |
| GCTCAGCATTACTTGCGCGG+CGG | 0.731289 | 6_4:-12868025 | None:intergenic |
| ATTGTAACACACCTGCAGCG+TGG | 0.738381 | 6_4:-12868203 | None:intergenic |
| ATGGTAGAGGATCATCATGG+AGG | 0.740516 | 6_4:-12867757 | None:intergenic |
| GTTTCTGGACATCATCCCAG+AGG | 0.751856 | 6_4:+12866144 | Msa0977960:CDS |
| TCACACTTTAAAGAACGGCG+AGG | 0.754453 | 6_4:+12867489 | Msa0977960:CDS |
| AATATCGCAAGTGAGCAACG+AGG | 0.784334 | 6_4:-12867277 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAGAAAAAAATAAAAAT+TGG | - | chr6_4:12865157-12865176 | None:intergenic | 10.0% |
| !!! | TATTTTTTTAAAGAAACAAT+TGG | - | chr6_4:12866225-12866244 | None:intergenic | 10.0% |
| !! | TAATTGATATTAAAACTTAC+CGG | - | chr6_4:12865581-12865600 | None:intergenic | 15.0% |
| !!! | TATTTTCAATTTCTTTTAAG+CGG | - | chr6_4:12865789-12865808 | None:intergenic | 15.0% |
| !! | TTTATATTATTTATTTGTGC+AGG | + | chr6_4:12866843-12866862 | Msa0977960:intron | 15.0% |
| !!! | TTATTTTCGTAATTTTGATT+AGG | + | chr6_4:12867220-12867239 | Msa0977960:intron | 15.0% |
| !! | TACTAATATGTTCTTCTATT+TGG | - | chr6_4:12864979-12864998 | None:intergenic | 20.0% |
| !! | TATGCATATATGTATATTTC+AGG | - | chr6_4:12865222-12865241 | None:intergenic | 20.0% |
| !!! | AGTCAATAATTTTAATAGCA+TGG | - | chr6_4:12866001-12866020 | None:intergenic | 20.0% |
| !!! | TGCTATTAAAATTATTGACT+TGG | + | chr6_4:12866001-12866020 | Msa0977960:intron | 20.0% |
| !!! | TCTTTAAAAAAATATGTCTC+AGG | + | chr6_4:12866231-12866250 | Msa0977960:intron | 20.0% |
| !!! | GTTGATTTTATTAGTTCTAT+TGG | - | chr6_4:12866514-12866533 | None:intergenic | 20.0% |
| !!! | ATATAATCATCACCTTTTTT+TGG | - | chr6_4:12866654-12866673 | None:intergenic | 20.0% |
| !! | TAAACAAAGAAGATAAAAGA+AGG | - | chr6_4:12866827-12866846 | None:intergenic | 20.0% |
| !!! | TAGCATTGAATGAAATAAAA+AGG | + | chr6_4:12867414-12867433 | Msa0977960:intron | 20.0% |
| !!! | AGCATTGAATGAAATAAAAA+GGG | + | chr6_4:12867415-12867434 | Msa0977960:intron | 20.0% |
| !! | ACAATTATATGAAAAACATC+AGG | - | chr6_4:12867545-12867564 | None:intergenic | 20.0% |
| !! | ATAGAATATCCAAATTCTTT+AGG | - | chr6_4:12868245-12868264 | None:intergenic | 20.0% |
| !! | ATATATTCACAAAGATTCAT+TGG | - | chr6_4:12868466-12868485 | None:intergenic | 20.0% |
| ! | TAATTGAAATTACTAGAAGG+TGG | - | chr6_4:12865034-12865053 | None:intergenic | 25.0% |
| ! | AGGTAATTGAAATTACTAGA+AGG | - | chr6_4:12865037-12865056 | None:intergenic | 25.0% |
| ! | AGTTTCATATATAACATCCA+AGG | - | chr6_4:12865072-12865091 | None:intergenic | 25.0% |
| ! | CACAACATAAACAAAAAAGT+GGG | - | chr6_4:12865385-12865404 | None:intergenic | 25.0% |
| ! | AATGCAATAAATGCAAAAGA+TGG | + | chr6_4:12865689-12865708 | Msa0977960:CDS | 25.0% |
| ! | ATCTATAAGAGAATTCAGTA+GGG | - | chr6_4:12866177-12866196 | None:intergenic | 25.0% |
| ! | TGAATTCTCTTATAGATCAA+GGG | + | chr6_4:12866180-12866199 | Msa0977960:CDS | 25.0% |
| ! | AGAAAAATACCAATATCTCA+TGG | - | chr6_4:12866472-12866491 | None:intergenic | 25.0% |
| !! | TGGATATCTTGATTTTTGTA+AGG | + | chr6_4:12866590-12866609 | Msa0977960:CDS | 25.0% |
| !! | ATCTTGATTTTTGTAAGGAA+AGG | + | chr6_4:12866595-12866614 | Msa0977960:CDS | 25.0% |
| !! | TCTTGATTTTTGTAAGGAAA+GGG | + | chr6_4:12866596-12866615 | Msa0977960:CDS | 25.0% |
| ! | CATGAAAATTCTCAATGTAT+TGG | - | chr6_4:12866760-12866779 | None:intergenic | 25.0% |
| ! | GTATCTTTCAATGCTAAAAA+AGG | + | chr6_4:12866865-12866884 | Msa0977960:CDS | 25.0% |
| ! | AATGAAGAAAATATTGTCGT+TGG | + | chr6_4:12866890-12866909 | Msa0977960:CDS | 25.0% |
| !!! | TTTCGTAATTTTGATTAGGT+TGG | + | chr6_4:12867224-12867243 | Msa0977960:intron | 25.0% |
| !! | GAAAATCACACTTTAAAGAA+CGG | + | chr6_4:12867484-12867503 | Msa0977960:CDS | 25.0% |
| ! | ATATGAAAAACATCAGGTTT+AGG | - | chr6_4:12867539-12867558 | None:intergenic | 25.0% |
| ! | GATATCATTACATTTAGTGT+CGG | - | chr6_4:12867640-12867659 | None:intergenic | 25.0% |
| ! | AAAAATTACTCTGTTGTGAA+AGG | - | chr6_4:12868313-12868332 | None:intergenic | 25.0% |
| !!! | TTCACAACAGAGTAATTTTT+TGG | + | chr6_4:12868313-12868332 | Msa0977960:intron | 25.0% |
| GATGAATTAAGCAATCAAGT+AGG | + | chr6_4:12864836-12864855 | Msa0977960:CDS | 30.0% | |
| ACATATTAGTAGTCTGAGAA+AGG | + | chr6_4:12864988-12865007 | Msa0977960:CDS | 30.0% | |
| !! | TACCTTGATTTGTTAATCCT+TGG | + | chr6_4:12865052-12865071 | Msa0977960:intron | 30.0% |
| ATCCAAGGATTAACAAATCA+AGG | - | chr6_4:12865057-12865076 | None:intergenic | 30.0% | |
| TTTAACACAGATTACTTCTG+AGG | + | chr6_4:12865292-12865311 | Msa0977960:intron | 30.0% | |
| ! | AAAGTCTTTCCCTTTTACAT+AGG | - | chr6_4:12865349-12865368 | None:intergenic | 30.0% |
| CCACAACATAAACAAAAAAG+TGG | - | chr6_4:12865386-12865405 | None:intergenic | 30.0% | |
| !!! | CCACTTTTTTGTTTATGTTG+TGG | + | chr6_4:12865383-12865402 | Msa0977960:CDS | 30.0% |
| ! | GAGTGTTACAAGACTTTTAA+AGG | + | chr6_4:12865476-12865495 | Msa0977960:CDS | 30.0% |
| GTGAAGATGTCAAAATCAAT+GGG | + | chr6_4:12865498-12865517 | Msa0977960:CDS | 30.0% | |
| TGATGAAGTAATTGAAGAAC+CGG | + | chr6_4:12865559-12865578 | Msa0977960:CDS | 30.0% | |
| CTATAACAAGAAAGCAGATT+TGG | + | chr6_4:12865732-12865751 | Msa0977960:CDS | 30.0% | |
| ! | ATTTCTTTTAAGCGGCATAA+AGG | - | chr6_4:12865781-12865800 | None:intergenic | 30.0% |
| ! | TGAAAAGTCTTTTCTCTAAG+TGG | - | chr6_4:12865876-12865895 | None:intergenic | 30.0% |
| AAAAAACTGGGAAAAAGATG+AGG | + | chr6_4:12865915-12865934 | Msa0977960:CDS | 30.0% | |
| GATCTATAAGAGAATTCAGT+AGG | - | chr6_4:12866178-12866197 | None:intergenic | 30.0% | |
| CTGAATTCTCTTATAGATCA+AGG | + | chr6_4:12866179-12866198 | Msa0977960:CDS | 30.0% | |
| CTTCTGTTTCAGAAAATTGA+AGG | + | chr6_4:12866287-12866306 | Msa0977960:CDS | 30.0% | |
| CAATATCTCATGGTAAACAA+AGG | - | chr6_4:12866462-12866481 | None:intergenic | 30.0% | |
| ! | CTTTGTTTACCATGAGATAT+TGG | + | chr6_4:12866460-12866479 | Msa0977960:CDS | 30.0% |
| ! | AAAAGCATAAGCAGAAAGAA+TGG | - | chr6_4:12866548-12866567 | None:intergenic | 30.0% |
| TTTCTTGCTTATCATCAGAT+TGG | + | chr6_4:12866570-12866589 | Msa0977960:intron | 30.0% | |
| ! | CTTGATTTTTGTAAGGAAAG+GGG | + | chr6_4:12866597-12866616 | Msa0977960:CDS | 30.0% |
| !! | TTTCTCAACTTGCTACATAT+GGG | + | chr6_4:12866620-12866639 | Msa0977960:CDS | 30.0% |
| !!! | TAATCATCACCTTTTTTTGG+AGG | - | chr6_4:12866651-12866670 | None:intergenic | 30.0% |
| AAAGAAATGATCATACACGT+TGG | - | chr6_4:12866921-12866940 | None:intergenic | 30.0% | |
| TCTTTGTTCCTACTGAAAAA+AGG | + | chr6_4:12866936-12866955 | Msa0977960:CDS | 30.0% | |
| !!! | TTGGATTTCCTTTTTTCAGT+AGG | - | chr6_4:12866947-12866966 | None:intergenic | 30.0% |
| AGTGTCAAATAGAACAGTAA+AGG | + | chr6_4:12867084-12867103 | Msa0977960:CDS | 30.0% | |
| AAATAGAACAGTAAAGGACA+TGG | + | chr6_4:12867090-12867109 | Msa0977960:CDS | 30.0% | |
| AATAGAACAGTAAAGGACAT+GGG | + | chr6_4:12867091-12867110 | Msa0977960:CDS | 30.0% | |
| CATTTACTCGTGCATAAAAA+AGG | - | chr6_4:12867166-12867185 | None:intergenic | 30.0% | |
| ! | CTCTTGTAGGCAATATATTT+TGG | - | chr6_4:12867250-12867269 | None:intergenic | 30.0% |
| ! | TAGCATCTGAAATATGTGAA+TGG | - | chr6_4:12867457-12867476 | None:intergenic | 30.0% |
| !!! | TTGAATTATGTGCCATTTTC+AGG | + | chr6_4:12867593-12867612 | Msa0977960:intron | 30.0% |
| !! | AGAGTGGATTGTTTGAAAAT+AGG | + | chr6_4:12867667-12867686 | Msa0977960:CDS | 30.0% |
| !! | GAGTGGATTGTTTGAAAATA+GGG | + | chr6_4:12867668-12867687 | Msa0977960:CDS | 30.0% |
| !! | TCATTTTGAGTCAACACATT+AGG | - | chr6_4:12867792-12867811 | None:intergenic | 30.0% |
| !! | GATTACAATTTTGAGTCAAC+TGG | - | chr6_4:12867818-12867837 | None:intergenic | 30.0% |
| ! | TTCTTGATTTGAGAACAGTT+TGG | - | chr6_4:12868062-12868081 | None:intergenic | 30.0% |
| ! | ACCATATCTTTTTACAATGC+TGG | - | chr6_4:12868133-12868152 | None:intergenic | 30.0% |
| TATCCAAATTCTTTAGGTGA+TGG | - | chr6_4:12868239-12868258 | None:intergenic | 30.0% | |
| TATATAGAGTGCACAATGAA+TGG | + | chr6_4:12868481-12868500 | Msa0977960:three_prime_UTR | 30.0% | |
| ! | GAAAATTTTGCAAGTGATTG+CGG | - | chr6_4:12868525-12868544 | None:intergenic | 30.0% |
| ! | TCAAGGAAACAGCAACTTTT+GGG | - | chr6_4:12864937-12864956 | None:intergenic | 35.0% |
| ! | ATCAAGGAAACAGCAACTTT+TGG | - | chr6_4:12864938-12864957 | None:intergenic | 35.0% |
| ACACTTGCAACCTATGTAAA+AGG | + | chr6_4:12865336-12865355 | Msa0977960:CDS | 35.0% | |
| CACTTGCAACCTATGTAAAA+GGG | + | chr6_4:12865337-12865356 | Msa0977960:CDS | 35.0% | |
| !! | GAAGAAGAATTTGTTGCACA+AGG | + | chr6_4:12865440-12865459 | Msa0977960:CDS | 35.0% |
| GGTGAAGATGTCAAAATCAA+TGG | + | chr6_4:12865497-12865516 | Msa0977960:CDS | 35.0% | |
| TCATGCAAGAGAGAAAAAAC+TGG | + | chr6_4:12865902-12865921 | Msa0977960:CDS | 35.0% | |
| CATGCAAGAGAGAAAAAACT+GGG | + | chr6_4:12865903-12865922 | Msa0977960:CDS | 35.0% | |
| GAAGTTTATGTGCATACATG+CGG | - | chr6_4:12865955-12865974 | None:intergenic | 35.0% | |
| ! | TGCAATTTTGCAGTGATTCA+AGG | - | chr6_4:12866052-12866071 | None:intergenic | 35.0% |
| TTGAATCACTGCAAAATTGC+AGG | + | chr6_4:12866051-12866070 | Msa0977960:intron | 35.0% | |
| GAAAGTGAATAAGCAGTTTC+TGG | + | chr6_4:12866129-12866148 | Msa0977960:CDS | 35.0% | |
| GGATTTAATAGAAGTTCCCT+TGG | + | chr6_4:12866252-12866271 | Msa0977960:intron | 35.0% | |
| GAAGTATAACCTGAAACCAA+GGG | - | chr6_4:12866271-12866290 | None:intergenic | 35.0% | |
| ! | AGAAGTATAACCTGAAACCA+AGG | - | chr6_4:12866272-12866291 | None:intergenic | 35.0% |
| ! | GGAGTAGATGTATGCATTTT+TGG | + | chr6_4:12866308-12866327 | Msa0977960:CDS | 35.0% |
| !!! | CATTTTTGGAATGTATGTCC+AGG | + | chr6_4:12866322-12866341 | Msa0977960:CDS | 35.0% |
| ! | ATGTATACACATCGCTGATT+CGG | - | chr6_4:12866371-12866390 | None:intergenic | 35.0% |
| TTGATTCCGTCAAGTATTTC+AGG | + | chr6_4:12866399-12866418 | Msa0977960:CDS | 35.0% | |
| TTTAGGCCTGAAATACTTGA+CGG | - | chr6_4:12866408-12866427 | None:intergenic | 35.0% | |
| AGTATTTCAGGCCTAAAAGA+AGG | + | chr6_4:12866411-12866430 | Msa0977960:CDS | 35.0% | |
| ! | ATGGTAAACAAAGGTACGAA+GGG | - | chr6_4:12866453-12866472 | None:intergenic | 35.0% |
| !! | GTTTCTCAACTTGCTACATA+TGG | + | chr6_4:12866619-12866638 | Msa0977960:CDS | 35.0% |
| CTCAATGTATTGGACACATA+AGG | - | chr6_4:12866750-12866769 | None:intergenic | 35.0% | |
| TACTCGTGCATAAAAAAGGA+TGG | - | chr6_4:12867162-12867181 | None:intergenic | 35.0% | |
| ! | CACTGAATGCAAGAATTTTC+AGG | + | chr6_4:12867349-12867368 | Msa0977960:CDS | 35.0% |
| !! | AGAATTTTCAGGAGTGTGAA+AGG | + | chr6_4:12867360-12867379 | Msa0977960:CDS | 35.0% |
| ! | CATCAACATTAGCCTGAAAA+TGG | - | chr6_4:12867608-12867627 | None:intergenic | 35.0% |
| ! | CATTACATTTAGTGTCGGAA+GGG | - | chr6_4:12867635-12867654 | None:intergenic | 35.0% |
| ! | TCATTACATTTAGTGTCGGA+AGG | - | chr6_4:12867636-12867655 | None:intergenic | 35.0% |
| TTTCAAACAATCCACTCTCA+AGG | - | chr6_4:12867665-12867684 | None:intergenic | 35.0% | |
| ACACATTAGGATTGTGTAGA+TGG | - | chr6_4:12867779-12867798 | None:intergenic | 35.0% | |
| TCAACACCAGTATATCAATC+TGG | + | chr6_4:12867840-12867859 | Msa0977960:CDS | 35.0% | |
| CAACACCAGTATATCAATCT+GGG | + | chr6_4:12867841-12867860 | Msa0977960:CDS | 35.0% | |
| TGATTCCCAGATTGATATAC+TGG | - | chr6_4:12867849-12867868 | None:intergenic | 35.0% | |
| AGTATATCAATCTGGGAATC+AGG | + | chr6_4:12867848-12867867 | Msa0977960:CDS | 35.0% | |
| TCAGGAGTCAAATGAGAAAA+TGG | + | chr6_4:12867866-12867885 | Msa0977960:CDS | 35.0% | |
| CTTACTGAATTACACACAGA+TGG | + | chr6_4:12867962-12867981 | Msa0977960:intron | 35.0% | |
| GCCAGCATTGTAAAAAGATA+TGG | + | chr6_4:12868129-12868148 | Msa0977960:CDS | 35.0% | |
| CTACCATCACCTAAAGAATT+TGG | + | chr6_4:12868233-12868252 | Msa0977960:intron | 35.0% | |
| CAATCAAGTAGGATTCTCCA+AGG | + | chr6_4:12864847-12864866 | Msa0977960:CDS | 40.0% | |
| TAACGTTTGCGTACCATTTC+AGG | - | chr6_4:12864887-12864906 | None:intergenic | 40.0% | |
| ! | AAGGAAACAGCAACTTTTGG+GGG | - | chr6_4:12864935-12864954 | None:intergenic | 40.0% |
| ! | CAAGGAAACAGCAACTTTTG+GGG | - | chr6_4:12864936-12864955 | None:intergenic | 40.0% |
| ACGTCTGAACGAATCAATCA+AGG | - | chr6_4:12864954-12864973 | None:intergenic | 40.0% | |
| TCTGAGAAAGGAATCTGATC+AGG | + | chr6_4:12865000-12865019 | Msa0977960:CDS | 40.0% | |
| AGAAAGGAATCTGATCAGGT+TGG | + | chr6_4:12865004-12865023 | Msa0977960:intron | 40.0% | |
| ! | GATTACTTCTGAGGATCAAG+CGG | + | chr6_4:12865301-12865320 | Msa0977960:intron | 40.0% |
| ! | ATTACTTCTGAGGATCAAGC+GGG | + | chr6_4:12865302-12865321 | Msa0977960:CDS | 40.0% |
| CCTCTTTGCAAGATTTCTCT+TGG | - | chr6_4:12865534-12865553 | None:intergenic | 40.0% | |
| CCAAGAGAAATCTTGCAAAG+AGG | + | chr6_4:12865531-12865550 | Msa0977960:CDS | 40.0% | |
| !! | ATGACTGTTGTTTCGTCTAG+TGG | + | chr6_4:12865662-12865681 | Msa0977960:intron | 40.0% |
| !! | TGACTGTTGTTTCGTCTAGT+GGG | + | chr6_4:12865663-12865682 | Msa0977960:intron | 40.0% |
| GTTCCAAAAGCTGCTAACTT+TGG | + | chr6_4:12865817-12865836 | Msa0977960:CDS | 40.0% | |
| TAGATCAAGGGTAAGTTCAG+TGG | + | chr6_4:12866192-12866211 | Msa0977960:intron | 40.0% | |
| ATAGAAGTTCCCTTGGTTTC+AGG | + | chr6_4:12866259-12866278 | Msa0977960:intron | 40.0% | |
| ! | CCACTCTTTGTCCTTCTTTT+AGG | - | chr6_4:12866425-12866444 | None:intergenic | 40.0% |
| CCTAAAAGAAGGACAAAGAG+TGG | + | chr6_4:12866422-12866441 | Msa0977960:CDS | 40.0% | |
| ! | CATGGTAAACAAAGGTACGA+AGG | - | chr6_4:12866454-12866473 | None:intergenic | 40.0% |
| GCATAAGCAGAAAGAATGGA+AGG | - | chr6_4:12866544-12866563 | None:intergenic | 40.0% | |
| !!! | ATCACCTTTTTTTGGAGGAC+AGG | - | chr6_4:12866646-12866665 | None:intergenic | 40.0% |
| ! | TTCGGAGTCTTTTGCTCTTT+GGG | - | chr6_4:12866690-12866709 | None:intergenic | 40.0% |
| TGGCGTAGCTTATCTTTCTT+CGG | - | chr6_4:12866708-12866727 | None:intergenic | 40.0% | |
| CAAACGAGAAACTGTCATCT+TGG | - | chr6_4:12866966-12866985 | None:intergenic | 40.0% | |
| TCTCGTTTGCCATACTTTGA+TGG | + | chr6_4:12866977-12866996 | Msa0977960:CDS | 40.0% | |
| !!! | TGCTCTACTCTCTTTTTCGA+GGG | - | chr6_4:12867041-12867060 | None:intergenic | 40.0% |
| ATCACCAGTATGTCTTTGGA+AGG | - | chr6_4:12867127-12867146 | None:intergenic | 40.0% | |
| TTGCATCACCAGTATGTCTT+TGG | - | chr6_4:12867131-12867150 | None:intergenic | 40.0% | |
| ! | ACGAGGAAGTTTTCTCTTGT+AGG | - | chr6_4:12867263-12867282 | None:intergenic | 40.0% |
| TCCCAGAAACTATCACTTCA+CGG | - | chr6_4:12867316-12867335 | None:intergenic | 40.0% | |
| AATGATATCGTCCTTGAGAG+TGG | + | chr6_4:12867651-12867670 | Msa0977960:CDS | 40.0% | |
| CAAACTGTAACTGAGACTTC+TGG | - | chr6_4:12867713-12867732 | None:intergenic | 40.0% | |
| GATCATCATGGAGGAATACT+TGG | - | chr6_4:12867751-12867770 | None:intergenic | 40.0% | |
| TAGATGGTAGAGGATCATCA+TGG | - | chr6_4:12867763-12867782 | None:intergenic | 40.0% | |
| TAGGATTGTGTAGATGGTAG+AGG | - | chr6_4:12867773-12867792 | None:intergenic | 40.0% | |
| AGCTCGAATTTCACACTTAC+TGG | - | chr6_4:12868099-12868118 | None:intergenic | 40.0% | |
| TGTGAAATTCGAGCTAATCG+AGG | + | chr6_4:12868104-12868123 | Msa0977960:CDS | 40.0% | |
| CTCCAGAAATTGCAAAGACT+CGG | + | chr6_4:12868169-12868188 | Msa0977960:CDS | 40.0% | |
| TTCCGAGTCTTTGCAATTTC+TGG | - | chr6_4:12868174-12868193 | None:intergenic | 40.0% | |
| CTTCCAAAACTTCAGCTCTA+CGG | - | chr6_4:12868433-12868452 | None:intergenic | 40.0% | |
| !!! | GAAGTTTTGGAAGCAGTCAT+TGG | + | chr6_4:12868440-12868459 | Msa0977960:CDS | 40.0% |
| ! | TGATGAAGTATTCCCACCCT+TGG | - | chr6_4:12864783-12864802 | None:intergenic | 45.0% |
| AAGTAGGATTCTCCAAGGAC+TGG | + | chr6_4:12864852-12864871 | Msa0977960:CDS | 45.0% | |
| !! | CTGGAGGTATCATCCTGAAA+TGG | + | chr6_4:12864871-12864890 | Msa0977960:CDS | 45.0% |
| ! | GCACCAAAGTTAGCAGCTTT+TGG | - | chr6_4:12865823-12865842 | None:intergenic | 45.0% |
| CACAGTTCTTGTCAAGTCCT+TGG | - | chr6_4:12865845-12865864 | None:intergenic | 45.0% | |
| CAGTAGGGTAATTCTCCTCT+GGG | - | chr6_4:12866162-12866181 | None:intergenic | 45.0% | |
| TCAGTAGGGTAATTCTCCTC+TGG | - | chr6_4:12866163-12866182 | None:intergenic | 45.0% | |
| GGAATGTATGTCCAGGAGTT+TGG | + | chr6_4:12866329-12866348 | Msa0977960:CDS | 45.0% | |
| !! | GAGTCTTTTGCTCTTTGGGA+TGG | - | chr6_4:12866686-12866705 | None:intergenic | 45.0% |
| ! | CTTCGGAGTCTTTTGCTCTT+TGG | - | chr6_4:12866691-12866710 | None:intergenic | 45.0% |
| AGAAAGATAAGCTACGCCAC+TGG | + | chr6_4:12866709-12866728 | Msa0977960:CDS | 45.0% | |
| GAGAAAGTAAGACTGACCAG+TGG | - | chr6_4:12866728-12866747 | None:intergenic | 45.0% | |
| TGCCATACTTTGATGGAGAC+TGG | + | chr6_4:12866984-12867003 | Msa0977960:CDS | 45.0% | |
| CACCAGTCTCCATCAAAGTA+TGG | - | chr6_4:12866989-12867008 | None:intergenic | 45.0% | |
| CATACTTTGATGGAGACTGG+TGG | + | chr6_4:12866987-12867006 | Msa0977960:CDS | 45.0% | |
| !! | CTGCTCTACTCTCTTTTTCG+AGG | - | chr6_4:12867042-12867061 | None:intergenic | 45.0% |
| ! | CAGTATGTCTTTGGAAGGCT+TGG | - | chr6_4:12867122-12867141 | None:intergenic | 45.0% |
| CAAGCCTTCCAAAGACATAC+TGG | + | chr6_4:12867120-12867139 | Msa0977960:CDS | 45.0% | |
| AATATCGCAAGTGAGCAACG+AGG | - | chr6_4:12867280-12867299 | None:intergenic | 45.0% | |
| TGCCGTGAAGTGATAGTTTC+TGG | + | chr6_4:12867311-12867330 | Msa0977960:CDS | 45.0% | |
| GCCGTGAAGTGATAGTTTCT+GGG | + | chr6_4:12867312-12867331 | Msa0977960:CDS | 45.0% | |
| ! | TGATAGTTTCTGGGAAGCGT+TGG | + | chr6_4:12867321-12867340 | Msa0977960:CDS | 45.0% |
| ! | TCACACTTTAAAGAACGGCG+AGG | + | chr6_4:12867489-12867508 | Msa0977960:CDS | 45.0% |
| ATGGTAGAGGATCATCATGG+AGG | - | chr6_4:12867760-12867779 | None:intergenic | 45.0% | |
| GAACAGTTTGGATGAGAGCA+TGG | - | chr6_4:12868050-12868069 | None:intergenic | 45.0% | |
| AATGTAGAATACCACGCTGC+AGG | + | chr6_4:12868192-12868211 | Msa0977960:CDS | 45.0% | |
| ! | TTGCCGTAGAGCTGAAGTTT+TGG | + | chr6_4:12868427-12868446 | Msa0977960:CDS | 45.0% |
| TAGGATTCTCCAAGGACTGG+AGG | + | chr6_4:12864855-12864874 | Msa0977960:CDS | 50.0% | |
| AGGATGATACCTCCAGTCCT+TGG | - | chr6_4:12864867-12864886 | None:intergenic | 50.0% | |
| !! | AGCTGCTAACTTTGGTGCCA+AGG | + | chr6_4:12865825-12865844 | Msa0977960:CDS | 50.0% |
| GTGCATACATGCGGAGTTCT+CGG | - | chr6_4:12865946-12865965 | None:intergenic | 50.0% | |
| ! | GTTTCTGGACATCATCCCAG+AGG | + | chr6_4:12866144-12866163 | Msa0977960:CDS | 50.0% |
| GTATGTCCAGGAGTTTGGCT+CGG | + | chr6_4:12866334-12866353 | Msa0977960:CDS | 50.0% | |
| TGGGCCTGTCCTCCAAAAAA+AGG | + | chr6_4:12866639-12866658 | Msa0977960:CDS | 50.0% | |
| ! | TTTGATGGAGACTGGTGGTG+CGG | + | chr6_4:12866992-12867011 | Msa0977960:CDS | 50.0% |
| CGAGGTGCATACACTTTGTC+AGG | + | chr6_4:12867507-12867526 | Msa0977960:CDS | 50.0% | |
| TGGAGGAATACTTGGCACGA+CGG | - | chr6_4:12867743-12867762 | None:intergenic | 50.0% | |
| ATGGCTCAGCATTACTTGCG+CGG | - | chr6_4:12868031-12868050 | None:intergenic | 50.0% | |
| ATTGTAACACACCTGCAGCG+TGG | - | chr6_4:12868206-12868225 | None:intergenic | 50.0% | |
| CACATTCCGAGCCAAACTCC+TGG | - | chr6_4:12866343-12866362 | None:intergenic | 55.0% | |
| !! | CAGGAGTTTGGCTCGGAATG+TGG | + | chr6_4:12866341-12866360 | Msa0977960:CDS | 55.0% |
| ! | CTGGTGGTGCGGTAATGCTA+TGG | + | chr6_4:12867003-12867022 | Msa0977960:CDS | 55.0% |
| GCTCAGCATTACTTGCGCGG+CGG | - | chr6_4:12868028-12868047 | None:intergenic | 60.0% | |
| CAGCATTACTTGCGCGGCGG+CGG | - | chr6_4:12868025-12868044 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 12864773 | 12868579 | 12864773 | ID=Msa0977960;Name=Msa0977960 |
| chr6_4 | mRNA | 12864773 | 12868579 | 12864773 | ID=Msa0977960-mRNA-1;Parent=Msa0977960;Name=Msa0977960-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.46|1|0.91|0.84|13|86|778 |
| chr6_4 | exon | 12864773 | 12865021 | 12864773 | ID=Msa0977960-mRNA-1:exon:4451;Parent=Msa0977960-mRNA-1 |
| chr6_4 | exon | 12865302 | 12865580 | 12865302 | ID=Msa0977960-mRNA-1:exon:4452;Parent=Msa0977960-mRNA-1 |
| chr6_4 | exon | 12865682 | 12865936 | 12865682 | ID=Msa0977960-mRNA-1:exon:4453;Parent=Msa0977960-mRNA-1 |
| chr6_4 | exon | 12866073 | 12866201 | 12866073 | ID=Msa0977960-mRNA-1:exon:4454;Parent=Msa0977960-mRNA-1 |
| chr6_4 | exon | 12866281 | 12866481 | 12866281 | ID=Msa0977960-mRNA-1:exon:4455;Parent=Msa0977960-mRNA-1 |
| chr6_4 | exon | 12866588 | 12866730 | 12866588 | ID=Msa0977960-mRNA-1:exon:4456;Parent=Msa0977960-mRNA-1 |
| chr6_4 | exon | 12866865 | 12867153 | 12866865 | ID=Msa0977960-mRNA-1:exon:4457;Parent=Msa0977960-mRNA-1 |
| chr6_4 | exon | 12867242 | 12867381 | 12867242 | ID=Msa0977960-mRNA-1:exon:4458;Parent=Msa0977960-mRNA-1 |
| chr6_4 | exon | 12867471 | 12867528 | 12867471 | ID=Msa0977960-mRNA-1:exon:4459;Parent=Msa0977960-mRNA-1 |
| chr6_4 | exon | 12867615 | 12867887 | 12867615 | ID=Msa0977960-mRNA-1:exon:4460;Parent=Msa0977960-mRNA-1 |
| chr6_4 | exon | 12867981 | 12868213 | 12867981 | ID=Msa0977960-mRNA-1:exon:4461;Parent=Msa0977960-mRNA-1 |
| chr6_4 | exon | 12868382 | 12868502 | 12868382 | ID=Msa0977960-mRNA-1:exon:4462;Parent=Msa0977960-mRNA-1 |
| chr6_4 | exon | 12868527 | 12868579 | 12868527 | ID=Msa0977960-mRNA-1:exon:4463;Parent=Msa0977960-mRNA-1 |
| chr6_4 | CDS | 12864773 | 12865021 | 12864773 | ID=Msa0977960-mRNA-1:cds;Parent=Msa0977960-mRNA-1 |
| chr6_4 | CDS | 12865302 | 12865580 | 12865302 | ID=Msa0977960-mRNA-1:cds;Parent=Msa0977960-mRNA-1 |
| chr6_4 | CDS | 12865682 | 12865936 | 12865682 | ID=Msa0977960-mRNA-1:cds;Parent=Msa0977960-mRNA-1 |
| chr6_4 | CDS | 12866073 | 12866201 | 12866073 | ID=Msa0977960-mRNA-1:cds;Parent=Msa0977960-mRNA-1 |
| chr6_4 | CDS | 12866281 | 12866481 | 12866281 | ID=Msa0977960-mRNA-1:cds;Parent=Msa0977960-mRNA-1 |
| chr6_4 | CDS | 12866588 | 12866730 | 12866588 | ID=Msa0977960-mRNA-1:cds;Parent=Msa0977960-mRNA-1 |
| chr6_4 | CDS | 12866865 | 12867153 | 12866865 | ID=Msa0977960-mRNA-1:cds;Parent=Msa0977960-mRNA-1 |
| chr6_4 | CDS | 12867242 | 12867381 | 12867242 | ID=Msa0977960-mRNA-1:cds;Parent=Msa0977960-mRNA-1 |
| chr6_4 | CDS | 12867471 | 12867528 | 12867471 | ID=Msa0977960-mRNA-1:cds;Parent=Msa0977960-mRNA-1 |
| chr6_4 | CDS | 12867615 | 12867887 | 12867615 | ID=Msa0977960-mRNA-1:cds;Parent=Msa0977960-mRNA-1 |
| chr6_4 | CDS | 12867981 | 12868213 | 12867981 | ID=Msa0977960-mRNA-1:cds;Parent=Msa0977960-mRNA-1 |
| chr6_4 | CDS | 12868382 | 12868469 | 12868382 | ID=Msa0977960-mRNA-1:cds;Parent=Msa0977960-mRNA-1 |
| chr6_4 | three_prime_UTR | 12868470 | 12868502 | 12868470 | ID=Msa0977960-mRNA-1:three_prime_utr;Parent=Msa0977960-mRNA-1 |
| chr6_4 | three_prime_UTR | 12868527 | 12868579 | 12868527 | ID=Msa0977960-mRNA-1:three_prime_utr;Parent=Msa0977960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
