AlfalfaGEDB | Msa0979350

M. sativa cultivar zhongmu-4 / Msa0979350

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0979350	XP_039685680.1	83.980	799	108	3	1	779	1	799	0.0	1373

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0979350	sp\|Q9SZL8\|FRS5_ARATH	26.258	636	399	12	32	665	70	637	3.42e-65	235

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0979350	D3YBB9	75.836	807	178	4	1	798	49	847	0.0	1277

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0979350	TF	FAR1

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0979350	MtrunA17_Chr2g0324011	30.866	635	363	13	36	665	8	571	1.33e-101	326
Msa0979350	MtrunA17_Chr3g0088371	82.065	184	30	1	618	798	1	184	1.86e-101	311
Msa0979350	MtrunA17_Chr3g0082121	31.548	691	385	19	41	727	49	655	1.14e-99	324
Msa0979350	MtrunA17_Chr1g0202341	29.226	633	371	16	34	662	50	609	6.63e-79	268
Msa0979350	MtrunA17_Chr8g0363841	28.571	630	375	15	40	665	22	580	4.97e-73	251
Msa0979350	MtrunA17_Chr1g0203721	26.075	721	435	17	40	739	68	711	2.71e-71	251
Msa0979350	MtrunA17_Chr2g0296781	27.844	668	397	20	39	698	1	591	6.99e-68	239
Msa0979350	MtrunA17_Chr6g0458391	26.582	632	357	15	41	662	231	765	6.84e-66	234
Msa0979350	MtrunA17_Chr5g0448761	24.894	707	452	15	31	728	56	692	2.29e-65	233
Msa0979350	MtrunA17_Chr1g0164591	35.625	320	191	4	131	448	1	307	1.84e-63	216

Showing 1 to 10 of 32 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0979350	AT4G38180.1	26.258	636	399	12	32	665	70	637	3.48e-66	235
Msa0979350	AT4G15090.1	24.460	695	440	14	50	741	66	678	7.92e-57	209
Msa0979350	AT4G15090.5	24.460	695	440	14	50	741	66	678	7.92e-57	209
Msa0979350	AT4G15090.3	24.460	695	440	14	50	741	66	678	7.92e-57	209
Msa0979350	AT4G15090.2	24.460	695	440	14	50	741	66	678	7.92e-57	209
Msa0979350	AT4G15090.4	24.460	695	440	14	50	741	66	678	7.92e-57	209
Msa0979350	AT2G27110.3	26.523	509	317	11	213	719	36	489	3.96e-49	185
Msa0979350	AT2G27110.2	24.028	720	435	19	4	719	23	634	7.89e-49	186
Msa0979350	AT2G27110.1	24.028	720	435	19	4	719	23	634	7.89e-49	186
Msa0979350	AT1G76320.3	24.668	677	414	19	50	720	12	598	2.05e-48	182

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Find 124 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCTCTGGTTTATGTAA+TGG	0.552634	6_4:+16066357	None:intergenic
AACTCGTCAAAAGGAGATGG+TGG	0.603142	6_4:-16066163	Msa0979350:CDS
AAGAAAGACCAAATCCAATT+AGG	0.397771	6_4:-16064087	Msa0979350:CDS
AAGTGTTTGCGCAGATGCGG+AGG	0.587269	6_4:-16064272	Msa0979350:CDS
AATAAAGAAGGTTTCAAGAA+GGG	0.472567	6_4:-16066555	Msa0979350:CDS
AATAATAAATATCGGCCATT+AGG	0.344394	6_4:-16065955	Msa0979350:intron
AATCAGATTTCGACTACAAT+TGG	0.318540	6_4:-16065167	Msa0979350:CDS
AATCGAACAAGTGAATGGTC+TGG	0.540971	6_4:+16064964	None:intergenic
AATTCTTGATTGTTATGTAT+TGG	0.372244	6_4:-16063849	Msa0979350:three_prime_UTR
ACAAAATATGAAATCGGATA+AGG	0.448270	6_4:-16066601	Msa0979350:CDS

Showing 1 to 10 of 124 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAAAATTCAGTTATTGGTG+CGG	-	chr6_4:16063919-16063938	Msa0979350:three_prime_UTR	30.0%
CCATGATTCTTTATCACTAA+AGG	+	chr6_4:16063963-16063982	None:intergenic	30.0%
CCTTTAGTGATAAAGAATCA+TGG	-	chr6_4:16063960-16063979	Msa0979350:three_prime_UTR	30.0%
TAAAGAATCATGGAAGTCTT+TGG	-	chr6_4:16063970-16063989	Msa0979350:exon	30.0%
CGTTATGCTTGTAATAAAGA+AGG	-	chr6_4:16064124-16064143	Msa0979350:CDS	30.0%
GTCTGCTTAATCCTAAAAAT+AGG	-	chr6_4:16064161-16064180	Msa0979350:CDS	30.0%
TTCTCATACTCAACAAGAAT+TGG	+	chr6_4:16064202-16064221	None:intergenic	30.0%
TAAAGAAAAACCAGAGGAAA+GGG	-	chr6_4:16064225-16064244	Msa0979350:CDS	30.0%
AGAACATCTTATGAAGTGAT+GGG	-	chr6_4:16064439-16064458	Msa0979350:CDS	30.0%
TTTAAGTCCGAAAATCGAAA+AGG	+	chr6_4:16064493-16064512	None:intergenic	30.0%

Showing 1 to 10 of 174 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	16063830	16066883	16063830	ID=Msa0979350;Name=Msa0979350
chr6_4	mRNA	16063830	16066883	16063830	ID=Msa0979350-mRNA-1;Parent=Msa0979350;Name=Msa0979350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45\|1\|1\|1\|1\|1\|2\|152\|800
chr6_4	exon	16063830	16065501	16063830	ID=Msa0979350-mRNA-1:exon:5200;Parent=Msa0979350-mRNA-1
chr6_4	exon	16065956	16066883	16065956	ID=Msa0979350-mRNA-1:exon:5199;Parent=Msa0979350-mRNA-1
chr6_4	five_prime_UTR	16066839	16066883	16066839	ID=Msa0979350-mRNA-1:five_prime_utr;Parent=Msa0979350-mRNA-1
chr6_4	CDS	16065956	16066838	16065956	ID=Msa0979350-mRNA-1:cds;Parent=Msa0979350-mRNA-1
chr6_4	CDS	16063982	16065501	16063982	ID=Msa0979350-mRNA-1:cds;Parent=Msa0979350-mRNA-1
chr6_4	three_prime_UTR	16063830	16063981	16063830	ID=Msa0979350-mRNA-1:three_prime_utr;Parent=Msa0979350-mRNA-1

Gene Sequence

>Msa0979350

ATGGATTTGATATCAACTTCATCTGAGAGTGGACAATTGACGATTGAAAATTCAGTTATTGGTGCGGATAGTTCTCAATGTTACTCCTTTAGTGATAAAGAATCATGGAAGTCTTTGGTCTTTAAATCTATAAAAGAGATTGAAGATTTTTATTTTAATTATGCATATAACACTGGATTCTCTGTTAGGAGTATGTTGAAGTCCAAGAACAATTCACAAAATATGAAATCGGATAAGGTACATTATGTGCGTTATGCTTGTAATAAAGAAGGTTTCAAGAAGGGAAGTCTGCTTAATCCTAAAAATAGGCCAACATGTGACAATCCAATTCTTGTTGAGTATGAGAAAGCTAAAGAAAAACCAGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGTTGGATGAAGCGTTGAATGTCTATAAGATATATAGGTGGGAAGTTGATCACTGTCATCCATTACATAAACCAGAGCATTTGCGCTACTTGAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTTGCTTTAATAAATTCTAAAGCTGGAATGTCGATGAGAACATCTTATGAAGTGATGGGTGAAGGTGTTGGAGGCACGGAGAATCTTCCTTTTCGATTTTCGGACTTAAAGAACTATCTAATGACAACTCGTCAAAAGGAGATGGTGGCTGGTGAAGCAACTATTATTCAAGAATTCTTTAGAAATGAAGCTCTCTCGAAACCAAGTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCTAGTATTTTTTGGGCAGATGGAATTATGCAACAAGATTATGCTCTATTTGGTGATGTTGTCAGTTTTGATACAACTTACCGAACAAATAATAAATATCGGCCATTAGCTGCCTTTCTTGGTTTTGACAATCATCGTAAGAGTGTGTTATTTGGTGCTGCGCTACTGTATGATGAGACATCAGCTACTTTTGATTGGTTGTTTACAACTTTTTTGAAGTGTATGTCCAATAAGAAACCTCAAACCATATACACAGACCAGGCTGGTGCGTTGTTGAAGTCAATTCCGAATGTTTTTCAAGGTGTTTTCCATGGTCTTTGCTCATGGCACATGGGAGAGAATGCAAAGAAAAATCTCGGCTCTCGTGCAAACAGTGCATTTTTCGATGAGTTAACTAATTTGGTTTCAAATGTCGAAGATGAATCAGATTTCGACTACAATTGGGATCAGATGATGAAAAACTGTTTTAATGGAAGGCCTACTTCAGACTTTAAGTGGCTTGTTCAAACTCATTCAAATCGTATGCATTGGTCTTCAGTTTGGGTGAGGTCACATTTTACAGCTGGTTTGAAAACGACTCAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTTTTCAGCCAGACCATTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGGGATAATCATGCTGATTTGGACTTCAAGGCTGCAAACACTAGAACAAAAAATAATTATCCCAACAGTCAGCTTATGTGGTCCGTAGTAAACAAGTATACACCATCTTGCTTTTCATTTATTCACAGTCAGTATGACCTTTCCTTCAAATACTATTTTGAGGAGGACACAACAAAAGGGTCTGAATTGAACAAGTTCTTCAAAGTTTTTACAATTGAGAAGGTTGATTATAATTACGACGATGTTGATAATGATAATGAGAGGGTTTCAAATGTTGATGTTTTGGATGCAGAACTTGAAGGAAACCTTTCCCCAAGGTTTGAAGATCATAATCGACTTGATGAAAGGGTTGTCACAGTCGACATTAGGAGCAAAAGTTTTACTTGTTCATGTCGTATGTTTGAGAACCGGGGTTTCTTATGTCTACATGTTTTCAAGATTTTGGAGTTCTTAGGTGGTCATGTGCAATATCATTTTTTGAAGACTATACCTGCACAATATGTTTTAAAGCGGTGGACTAGAGATGTGCGTCCGTCTGTCGATAAGCTGAAATCTACCATGAATGTTGGCACTAAAGACACCACTCAAGCACAACGATATCAACAAATTTGTGCTGTTACAGTCCAGCTTTCTACAAGTGTTTGCGCAGATGCGGAGGCATCTGAAATATTTCTCAACGGTGTTCTTGAGGCAGGGAAAAAGGCAGAGGAGTTTCTTATTTCTAAAGGTATTCATACAGATCGATCATCCGTTACGCCTTCTAAGTCTTCAGAAGCAGTTGCTGTCTGTGAACCATCTGTTGGGACTGCACCAAAGTTCAAAGAAAGACCAAATCCAATTAGGTCAAAGAAGCGACTTAAAAGTGATTATGAAAAAGCTAGGGCAAGACAGAAATTCCTTATAGCTCGGAAGAAGCAAAATAAAGATGATGAGGCTTTAACAATTTAA

Protein sequence

>Msa0979350

MDLISTSSESGQLTIENSVIGADSSQCYSFSDKESWKSLVFKSIKEIEDFYFNYAYNTGFSVRSMLKSKNNSQNMKSDKVHYVRYACNKEGFKKGSLLNPKNRPTCDNPILVEYEKAKEKPEERVGCKAGIYLKLDEALNVYKIYRWEVDHCHPLHKPEHLRYLRSFREVNEVQGQLALINSKAGMSMRTSYEVMGEGVGGTENLPFRFSDLKNYLMTTRQKEMVAGEATIIQEFFRNEALSKPSFYYDIQVDAAEDIASIFWADGIMQQDYALFGDVVSFDTTYRTNNKYRPLAAFLGFDNHRKSVLFGAALLYDETSATFDWLFTTFLKCMSNKKPQTIYTDQAGALLKSIPNVFQGVFHGLCSWHMGENAKKNLGSRANSAFFDELTNLVSNVEDESDFDYNWDQMMKNCFNGRPTSDFKWLVQTHSNRMHWSSVWVRSHFTAGLKTTQLSESFNAFLRGFFQPDHSLVRFFSHFNIMVQRMRDNHADLDFKAANTRTKNNYPNSQLMWSVVNKYTPSCFSFIHSQYDLSFKYYFEEDTTKGSELNKFFKVFTIEKVDYNYDDVDNDNERVSNVDVLDAELEGNLSPRFEDHNRLDERVVTVDIRSKSFTCSCRMFENRGFLCLHVFKILEFLGGHVQYHFLKTIPAQYVLKRWTRDVRPSVDKLKSTMNVGTKDTTQAQRYQQICAVTVQLSTSVCADAEASEIFLNGVLEAGKKAEEFLISKGIHTDRSSVTPSKSSEAVAVCEPSVGTAPKFKERPNPIRSKKRLKSDYEKARARQKFLIARKKQNKDDEALTI*