Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979350 | XP_039685680.1 | 83.980 | 799 | 108 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979350 | sp|Q9SZL8|FRS5_ARATH | 26.258 | 636 | 399 | 12 | 32 | 665 | 70 | 637 | 3.42e-65 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979350 | D3YBB9 | 75.836 | 807 | 178 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1277 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0979350 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979350 | MtrunA17_Chr2g0324011 | 30.866 | 635 | 363 | 13 | 36 | 665 | 8 | 571 | 1.33e-101 | 326 |
| Msa0979350 | MtrunA17_Chr3g0088371 | 82.065 | 184 | 30 | 1 | 618 | 798 | 1 | 184 | 1.86e-101 | 311 |
| Msa0979350 | MtrunA17_Chr3g0082121 | 31.548 | 691 | 385 | 19 | 41 | 727 | 49 | 655 | 1.14e-99 | 324 |
| Msa0979350 | MtrunA17_Chr1g0202341 | 29.226 | 633 | 371 | 16 | 34 | 662 | 50 | 609 | 6.63e-79 | 268 |
| Msa0979350 | MtrunA17_Chr8g0363841 | 28.571 | 630 | 375 | 15 | 40 | 665 | 22 | 580 | 4.97e-73 | 251 |
| Msa0979350 | MtrunA17_Chr1g0203721 | 26.075 | 721 | 435 | 17 | 40 | 739 | 68 | 711 | 2.71e-71 | 251 |
| Msa0979350 | MtrunA17_Chr2g0296781 | 27.844 | 668 | 397 | 20 | 39 | 698 | 1 | 591 | 6.99e-68 | 239 |
| Msa0979350 | MtrunA17_Chr6g0458391 | 26.582 | 632 | 357 | 15 | 41 | 662 | 231 | 765 | 6.84e-66 | 234 |
| Msa0979350 | MtrunA17_Chr5g0448761 | 24.894 | 707 | 452 | 15 | 31 | 728 | 56 | 692 | 2.29e-65 | 233 |
| Msa0979350 | MtrunA17_Chr1g0164591 | 35.625 | 320 | 191 | 4 | 131 | 448 | 1 | 307 | 1.84e-63 | 216 |
| Msa0979350 | MtrunA17_Chr6g0477261 | 28.571 | 525 | 318 | 13 | 180 | 698 | 7 | 480 | 1.97e-62 | 222 |
| Msa0979350 | MtrunA17_Chr2g0287651 | 26.172 | 661 | 405 | 16 | 9 | 662 | 48 | 632 | 2.57e-61 | 223 |
| Msa0979350 | MtrunA17_Chr5g0441581 | 24.901 | 759 | 458 | 22 | 32 | 773 | 26 | 689 | 2.27e-56 | 206 |
| Msa0979350 | MtrunA17_Chr7g0258861 | 35.621 | 306 | 173 | 6 | 36 | 336 | 8 | 294 | 1.10e-53 | 188 |
| Msa0979350 | MtrunA17_Chr1g0172971 | 78.632 | 117 | 24 | 1 | 1 | 116 | 1 | 117 | 1.63e-52 | 192 |
| Msa0979350 | MtrunA17_Chr1g0207551 | 24.390 | 697 | 433 | 17 | 31 | 718 | 30 | 641 | 2.81e-52 | 195 |
| Msa0979350 | MtrunA17_Chr5g0440451 | 24.011 | 708 | 431 | 18 | 34 | 721 | 42 | 662 | 8.22e-52 | 195 |
| Msa0979350 | MtrunA17_Chr2g0329031 | 25.348 | 647 | 381 | 18 | 23 | 658 | 2 | 557 | 1.75e-51 | 192 |
| Msa0979350 | MtrunA17_Chr1g0196541 | 23.722 | 763 | 491 | 21 | 39 | 797 | 1 | 676 | 1.81e-51 | 192 |
| Msa0979350 | MtrunA17_Chr1g0198761 | 26.646 | 653 | 381 | 21 | 26 | 660 | 38 | 610 | 2.87e-51 | 192 |
| Msa0979350 | MtrunA17_Chr3g0118611 | 27.038 | 503 | 307 | 11 | 221 | 719 | 111 | 557 | 1.88e-48 | 184 |
| Msa0979350 | MtrunA17_Chr3g0080351 | 23.724 | 725 | 449 | 16 | 34 | 752 | 75 | 701 | 4.82e-48 | 183 |
| Msa0979350 | MtrunA17_Chr1g0203051 | 22.581 | 589 | 389 | 8 | 50 | 637 | 94 | 616 | 2.80e-46 | 176 |
| Msa0979350 | MtrunA17_Chr2g0290391 | 25.389 | 642 | 376 | 19 | 38 | 660 | 54 | 611 | 3.15e-45 | 173 |
| Msa0979350 | MtrunA17_Chr2g0287061 | 23.916 | 669 | 378 | 20 | 41 | 694 | 189 | 741 | 2.38e-44 | 172 |
| Msa0979350 | MtrunA17_Chr2g0276841 | 25.629 | 636 | 375 | 22 | 49 | 669 | 84 | 636 | 6.70e-44 | 169 |
| Msa0979350 | MtrunA17_Chr5g0431001 | 27.716 | 451 | 281 | 12 | 40 | 473 | 66 | 488 | 2.44e-42 | 161 |
| Msa0979350 | MtrunA17_Chr2g0291591 | 26.611 | 481 | 290 | 13 | 37 | 499 | 66 | 501 | 7.98e-42 | 161 |
| Msa0979350 | MtrunA17_Chr2g0291581 | 23.089 | 628 | 400 | 13 | 38 | 662 | 74 | 621 | 2.86e-41 | 161 |
| Msa0979350 | MtrunA17_Chr6g0475591 | 90.411 | 73 | 7 | 0 | 188 | 260 | 1 | 73 | 1.52e-40 | 143 |
| Msa0979350 | MtrunA17_Chr5g0448511 | 24.779 | 452 | 286 | 9 | 216 | 665 | 1 | 400 | 6.89e-39 | 152 |
| Msa0979350 | MtrunA17_Chr2g0294841 | 27.669 | 459 | 285 | 14 | 41 | 482 | 51 | 479 | 1.29e-35 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979350 | AT4G38180.1 | 26.258 | 636 | 399 | 12 | 32 | 665 | 70 | 637 | 3.48e-66 | 235 |
| Msa0979350 | AT4G15090.1 | 24.460 | 695 | 440 | 14 | 50 | 741 | 66 | 678 | 7.92e-57 | 209 |
| Msa0979350 | AT4G15090.5 | 24.460 | 695 | 440 | 14 | 50 | 741 | 66 | 678 | 7.92e-57 | 209 |
| Msa0979350 | AT4G15090.3 | 24.460 | 695 | 440 | 14 | 50 | 741 | 66 | 678 | 7.92e-57 | 209 |
| Msa0979350 | AT4G15090.2 | 24.460 | 695 | 440 | 14 | 50 | 741 | 66 | 678 | 7.92e-57 | 209 |
| Msa0979350 | AT4G15090.4 | 24.460 | 695 | 440 | 14 | 50 | 741 | 66 | 678 | 7.92e-57 | 209 |
| Msa0979350 | AT2G27110.3 | 26.523 | 509 | 317 | 11 | 213 | 719 | 36 | 489 | 3.96e-49 | 185 |
| Msa0979350 | AT2G27110.2 | 24.028 | 720 | 435 | 19 | 4 | 719 | 23 | 634 | 7.89e-49 | 186 |
| Msa0979350 | AT2G27110.1 | 24.028 | 720 | 435 | 19 | 4 | 719 | 23 | 634 | 7.89e-49 | 186 |
| Msa0979350 | AT1G76320.3 | 24.668 | 677 | 414 | 19 | 50 | 720 | 12 | 598 | 2.05e-48 | 182 |
| Msa0979350 | AT3G06250.2 | 24.409 | 635 | 353 | 16 | 34 | 661 | 189 | 703 | 2.44e-48 | 184 |
| Msa0979350 | AT3G06250.1 | 24.409 | 635 | 353 | 16 | 34 | 661 | 189 | 703 | 2.44e-48 | 184 |
| Msa0979350 | AT3G06250.3 | 24.409 | 635 | 353 | 16 | 34 | 661 | 189 | 703 | 2.44e-48 | 184 |
| Msa0979350 | AT1G76320.2 | 24.668 | 677 | 414 | 19 | 50 | 720 | 12 | 598 | 5.08e-48 | 182 |
| Msa0979350 | AT1G76320.1 | 24.668 | 677 | 414 | 19 | 50 | 720 | 12 | 598 | 5.74e-48 | 182 |
| Msa0979350 | AT1G76320.4 | 24.668 | 677 | 414 | 19 | 50 | 720 | 12 | 598 | 5.74e-48 | 182 |
| Msa0979350 | AT3G22170.2 | 22.324 | 766 | 476 | 20 | 1 | 753 | 32 | 691 | 7.16e-46 | 177 |
| Msa0979350 | AT3G22170.1 | 22.324 | 766 | 476 | 20 | 1 | 753 | 32 | 691 | 7.16e-46 | 177 |
| Msa0979350 | AT5G18960.2 | 24.575 | 647 | 360 | 19 | 24 | 661 | 200 | 727 | 9.53e-44 | 170 |
| Msa0979350 | AT5G18960.1 | 24.575 | 647 | 360 | 19 | 24 | 661 | 200 | 727 | 9.53e-44 | 170 |
| Msa0979350 | AT4G38170.1 | 25.522 | 431 | 263 | 12 | 235 | 662 | 24 | 399 | 6.28e-41 | 159 |
| Msa0979350 | AT1G10240.2 | 25.119 | 629 | 367 | 22 | 49 | 659 | 62 | 604 | 1.38e-40 | 159 |
| Msa0979350 | AT1G10240.1 | 25.119 | 629 | 367 | 22 | 49 | 659 | 62 | 604 | 1.38e-40 | 159 |
| Msa0979350 | AT5G28530.1 | 24.383 | 648 | 375 | 22 | 40 | 660 | 60 | 619 | 5.58e-40 | 157 |
| Msa0979350 | AT5G28530.3 | 24.417 | 643 | 377 | 21 | 40 | 660 | 60 | 615 | 7.58e-40 | 157 |
| Msa0979350 | AT5G28530.2 | 24.417 | 643 | 377 | 21 | 40 | 660 | 60 | 615 | 7.58e-40 | 157 |
| Msa0979350 | AT2G32250.5 | 23.695 | 747 | 428 | 25 | 1 | 740 | 8 | 619 | 9.16e-38 | 152 |
| Msa0979350 | AT2G32250.6 | 23.695 | 747 | 428 | 25 | 1 | 740 | 8 | 619 | 1.49e-37 | 151 |
| Msa0979350 | AT2G32250.1 | 23.695 | 747 | 428 | 25 | 1 | 740 | 8 | 619 | 1.49e-37 | 151 |
| Msa0979350 | AT2G32250.3 | 23.695 | 747 | 428 | 25 | 1 | 740 | 8 | 619 | 1.49e-37 | 151 |
| Msa0979350 | AT2G32250.2 | 23.695 | 747 | 428 | 25 | 1 | 740 | 8 | 619 | 1.49e-37 | 151 |
| Msa0979350 | AT2G32250.4 | 23.695 | 747 | 428 | 25 | 1 | 740 | 8 | 619 | 1.49e-37 | 151 |
| Msa0979350 | AT2G32250.7 | 23.479 | 707 | 403 | 22 | 41 | 740 | 3 | 578 | 7.57e-37 | 149 |
| Msa0979350 | AT2G32250.8 | 23.496 | 698 | 396 | 22 | 50 | 740 | 12 | 578 | 8.43e-37 | 149 |
| Msa0979350 | AT1G80010.1 | 23.944 | 639 | 391 | 22 | 41 | 662 | 101 | 661 | 5.30e-36 | 146 |
| Msa0979350 | AT1G52520.1 | 22.436 | 624 | 406 | 16 | 41 | 662 | 91 | 638 | 9.90e-32 | 132 |
| Msa0979350 | AT4G19990.5 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 3.90e-27 | 118 |
| Msa0979350 | AT4G19990.5 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 1.15e-11 | 68.9 |
| Msa0979350 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 4.27e-27 | 118 |
| Msa0979350 | AT4G19990.1 | 34.586 | 133 | 73 | 3 | 591 | 721 | 438 | 558 | 1.08e-11 | 68.9 |
| Msa0979350 | AT4G19990.3 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 4.38e-27 | 118 |
| Msa0979350 | AT4G19990.3 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 1.09e-11 | 68.9 |
| Msa0979350 | AT4G19990.4 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 4.38e-27 | 118 |
| Msa0979350 | AT4G19990.4 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 1.09e-11 | 68.9 |
| Msa0979350 | AT4G19990.7 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 4.85e-27 | 118 |
| Msa0979350 | AT4G19990.7 | 34.586 | 133 | 73 | 3 | 591 | 721 | 509 | 629 | 1.21e-11 | 68.9 |
| Msa0979350 | AT4G19990.6 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 5.99e-27 | 118 |
| Msa0979350 | AT4G19990.6 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 1.05e-11 | 69.3 |
| Msa0979350 | AT4G19990.2 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 5.99e-27 | 118 |
| Msa0979350 | AT4G19990.2 | 34.586 | 133 | 73 | 3 | 591 | 721 | 495 | 615 | 1.05e-11 | 69.3 |
| Msa0979350 | AT5G28530.4 | 22.100 | 638 | 339 | 25 | 40 | 660 | 60 | 556 | 2.92e-21 | 99.4 |
| Msa0979350 | AT5G28530.5 | 22.117 | 633 | 341 | 24 | 40 | 660 | 60 | 552 | 5.14e-21 | 98.6 |
Find 124 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGATTGAAAATTCAGTTAT+TGG | 0.134692 | 6_4:-16066777 | Msa0979350:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 6_4:-16065208 | Msa0979350:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 6_4:+16064073 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 6_4:-16064941 | Msa0979350:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 6_4:-16065489 | Msa0979350:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 6_4:-16066012 | Msa0979350:CDS |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 6_4:-16065456 | Msa0979350:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 6_4:+16065362 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 6_4:+16064079 | None:intergenic |
| TTCTCATACTCAACAAGAAT+TGG | 0.300636 | 6_4:+16066492 | None:intergenic |
| GGTTTCAAATGTTGATGTTT+TGG | 0.317051 | 6_4:-16064644 | Msa0979350:CDS |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 6_4:-16065167 | Msa0979350:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 6_4:-16064227 | Msa0979350:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 6_4:+16065344 | None:intergenic |
| AATAATAAATATCGGCCATT+AGG | 0.344394 | 6_4:-16065955 | Msa0979350:intron |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 6_4:-16063830 | Msa0979350:three_prime_UTR |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 6_4:-16064908 | Msa0979350:CDS |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.347776 | 6_4:+16064011 | None:intergenic |
| GCCGATATTTATTATTTGTT+CGG | 0.355120 | 6_4:+16065962 | None:intergenic |
| GTCTTTAGTGCCAACATTCA+TGG | 0.367086 | 6_4:+16064351 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 6_4:-16065067 | Msa0979350:CDS |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 6_4:-16063849 | Msa0979350:three_prime_UTR |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 6_4:-16064235 | Msa0979350:CDS |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 6_4:-16064899 | Msa0979350:CDS |
| ACCGAACAAATAATAAATAT+CGG | 0.389395 | 6_4:-16065963 | Msa0979350:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 6_4:-16066875 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 6_4:-16065068 | Msa0979350:CDS |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 6_4:-16064087 | Msa0979350:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 6_4:+16064097 | None:intergenic |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 6_4:-16064202 | Msa0979350:CDS |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 6_4:+16066731 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 6_4:-16066721 | Msa0979350:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 6_4:-16064519 | Msa0979350:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 6_4:+16064596 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 6_4:-16066650 | Msa0979350:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 6_4:-16064561 | Msa0979350:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 6_4:+16064595 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 6_4:-16066315 | Msa0979350:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 6_4:-16066433 | Msa0979350:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 6_4:-16066401 | Msa0979350:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 6_4:+16065351 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 6_4:-16066450 | Msa0979350:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 6_4:+16064418 | None:intergenic |
| ACAAAATATGAAATCGGATA+AGG | 0.448270 | 6_4:-16066601 | Msa0979350:CDS |
| CGTTATGCTTGTAATAAAGA+AGG | 0.449439 | 6_4:-16066567 | Msa0979350:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 6_4:-16066285 | Msa0979350:CDS |
| CTCCTCAAAATAGTATTTGA+AGG | 0.453936 | 6_4:+16064765 | None:intergenic |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 6_4:+16066345 | None:intergenic |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 6_4:-16064518 | Msa0979350:CDS |
| GGCCTACTTCAGACTTTAAG+TGG | 0.462107 | 6_4:-16065113 | Msa0979350:CDS |
| CGCAAACACTTGTAGAAAGC+TGG | 0.464466 | 6_4:+16064284 | None:intergenic |
| CAATTCACAAAATATGAAAT+CGG | 0.467278 | 6_4:-16066607 | Msa0979350:CDS |
| TTTGAGGAGGACACAACAAA+AGG | 0.469432 | 6_4:-16064751 | Msa0979350:CDS |
| AATAAAGAAGGTTTCAAGAA+GGG | 0.472567 | 6_4:-16066555 | Msa0979350:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.474278 | 6_4:-16065277 | Msa0979350:CDS |
| ACTGCTTCTGAAGACTTAGA+AGG | 0.474504 | 6_4:+16064151 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 6_4:+16066456 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 6_4:-16066663 | Msa0979350:CDS |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 6_4:-16064126 | Msa0979350:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 6_4:-16066172 | Msa0979350:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 6_4:+16065476 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 6_4:-16065166 | Msa0979350:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 6_4:-16066159 | Msa0979350:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 6_4:-16064927 | Msa0979350:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 6_4:+16066067 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 6_4:-16064127 | Msa0979350:CDS |
| GACCACATAAGCTGACTGTT+GGG | 0.506733 | 6_4:+16064847 | None:intergenic |
| GAGGCTTTAACAATTTAAGC+AGG | 0.507220 | 6_4:-16063977 | Msa0979350:exon |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 6_4:-16065080 | Msa0979350:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 6_4:-16064582 | Msa0979350:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 6_4:+16066201 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 6_4:-16065062 | Msa0979350:CDS |
| ATCCCAACAGTCAGCTTATG+TGG | 0.513497 | 6_4:-16064849 | Msa0979350:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 6_4:+16064602 | None:intergenic |
| CAAAATAGTATTTGAAGGAA+AGG | 0.519540 | 6_4:+16064770 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 6_4:+16064959 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 6_4:-16066397 | Msa0979350:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 6_4:-16064581 | Msa0979350:CDS |
| TTGAGGAGGACACAACAAAA+GGG | 0.529908 | 6_4:-16064750 | Msa0979350:CDS |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 6_4:-16064021 | Msa0979350:CDS |
| CTGAAATCTACCATGAATGT+TGG | 0.534154 | 6_4:-16064361 | Msa0979350:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 6_4:+16064964 | None:intergenic |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 6_4:-16066731 | Msa0979350:CDS |
| GAGAACATCTTATGAAGTGA+TGG | 0.551307 | 6_4:-16066253 | Msa0979350:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 6_4:+16066357 | None:intergenic |
| TACAAGTGTTTGCGCAGATG+CGG | 0.554469 | 6_4:-16064275 | Msa0979350:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 6_4:+16065331 | None:intergenic |
| TAATAAAGAAGGTTTCAAGA+AGG | 0.561053 | 6_4:-16066556 | Msa0979350:CDS |
| AGAATTGGATTGTCACATGT+TGG | 0.564120 | 6_4:+16066507 | None:intergenic |
| GGGTGAAGGTGTTGGAGGCA+CGG | 0.565649 | 6_4:-16066232 | Msa0979350:CDS |
| GGACCACATAAGCTGACTGT+TGG | 0.579264 | 6_4:+16064846 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 6_4:+16064115 | None:intergenic |
| GAAGCAAAATAAAGATGATG+AGG | 0.585911 | 6_4:-16063996 | Msa0979350:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 6_4:+16064825 | None:intergenic |
| AAGTGTTTGCGCAGATGCGG+AGG | 0.587269 | 6_4:-16064272 | Msa0979350:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 6_4:-16064234 | Msa0979350:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 6_4:-16065345 | Msa0979350:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 6_4:-16064239 | Msa0979350:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 6_4:-16063934 | Msa0979350:three_prime_UTR |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 6_4:-16066166 | Msa0979350:CDS |
| TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 6_4:-16064612 | Msa0979350:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 6_4:+16064327 | None:intergenic |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 6_4:-16066163 | Msa0979350:CDS |
| GAAGTGATGGGTGAAGGTGT+TGG | 0.603704 | 6_4:-16066240 | Msa0979350:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.609132 | 6_4:-16064666 | Msa0979350:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 6_4:-16066807 | Msa0979350:CDS |
| TGAAAATTCAGTTATTGGTG+CGG | 0.616456 | 6_4:-16066772 | Msa0979350:CDS |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.617789 | 6_4:+16065111 | None:intergenic |
| TGTTGATAATGATAATGAGA+GGG | 0.618346 | 6_4:-16064665 | Msa0979350:CDS |
| GTGATGGGTGAAGGTGTTGG+AGG | 0.621481 | 6_4:-16066237 | Msa0979350:CDS |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 6_4:+16064597 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 6_4:-16065276 | Msa0979350:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.643044 | 6_4:-16066252 | Msa0979350:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 6_4:-16064926 | Msa0979350:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 6_4:-16066398 | Msa0979350:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 6_4:+16064376 | None:intergenic |
| CATGTAGACATAAGAAACCC+CGG | 0.653675 | 6_4:+16064500 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 6_4:+16064805 | None:intergenic |
| TCTTATGAAGTGATGGGTGA+AGG | 0.656961 | 6_4:-16066246 | Msa0979350:CDS |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 6_4:-16064250 | Msa0979350:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.661239 | 6_4:+16064159 | None:intergenic |
| TGTGCCATGAGCAAAGACCA+TGG | 0.661258 | 6_4:+16065280 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 6_4:-16065349 | Msa0979350:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 6_4:-16064517 | Msa0979350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr6_4:16066744-16066763 | Msa0979350:CDS | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr6_4:16064028-16064047 | Msa0979350:CDS | 20.0% |
| !! | CAATTCACAAAATATGAAAT+CGG | - | chr6_4:16064084-16064103 | Msa0979350:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr6_4:16064290-16064309 | Msa0979350:CDS | 20.0% |
| !! | ACCGAACAAATAATAAATAT+CGG | - | chr6_4:16064728-16064747 | Msa0979350:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr6_4:16064883-16064902 | Msa0979350:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+TGG | - | chr6_4:16064911-16064930 | Msa0979350:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr6_4:16065553-16065572 | Msa0979350:intron | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | - | chr6_4:16066842-16066861 | Msa0979350:five_prime_UTR | 20.0% |
| ! | ACGATTGAAAATTCAGTTAT+TGG | - | chr6_4:16063914-16063933 | Msa0979350:three_prime_UTR | 25.0% |
| !! | CATATTTTGTGAATTGTTCT+TGG | + | chr6_4:16064080-16064099 | None:intergenic | 25.0% |
| ! | ACAAAATATGAAATCGGATA+AGG | - | chr6_4:16064090-16064109 | Msa0979350:CDS | 25.0% |
| ! | TAATAAAGAAGGTTTCAAGA+AGG | - | chr6_4:16064135-16064154 | Msa0979350:CDS | 25.0% |
| ! | AATAAAGAAGGTTTCAAGAA+GGG | - | chr6_4:16064136-16064155 | Msa0979350:CDS | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr6_4:16064293-16064312 | Msa0979350:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr6_4:16064294-16064313 | Msa0979350:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr6_4:16064406-16064425 | Msa0979350:CDS | 25.0% |
| ! | TGGATATCATAGTAAAAACT+TGG | + | chr6_4:16064607-16064626 | None:intergenic | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr6_4:16064641-16064660 | Msa0979350:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr6_4:16064642-16064661 | Msa0979350:CDS | 25.0% |
| ! | GCCGATATTTATTATTTGTT+CGG | + | chr6_4:16064732-16064751 | None:intergenic | 25.0% |
| ! | AATAATAAATATCGGCCATT+AGG | - | chr6_4:16064736-16064755 | Msa0979350:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr6_4:16064754-16064773 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr6_4:16064801-16064820 | Msa0979350:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr6_4:16064903-16064922 | Msa0979350:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr6_4:16065173-16065192 | Msa0979350:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr6_4:16065391-16065410 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr6_4:16065483-16065502 | Msa0979350:intron | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr6_4:16065557-16065576 | Msa0979350:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr6_4:16065750-16065769 | Msa0979350:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr6_4:16065889-16065908 | None:intergenic | 25.0% |
| ! | CAAAATAGTATTTGAAGGAA+AGG | + | chr6_4:16065924-16065943 | None:intergenic | 25.0% |
| !! | TTCCTTCAAATACTATTTTG+AGG | - | chr6_4:16065924-16065943 | Msa0979350:intron | 25.0% |
| !! | CAAAGTTTTTACAATTGAGA+AGG | - | chr6_4:16065984-16066003 | Msa0979350:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr6_4:16066025-16066044 | Msa0979350:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr6_4:16066026-16066045 | Msa0979350:CDS | 25.0% |
| !!! | TCTACATGTTTTCAAGATTT+TGG | - | chr6_4:16066206-16066225 | Msa0979350:CDS | 25.0% |
| ! | AAAGTGATTATGAAAAAGCT+AGG | - | chr6_4:16066643-16066662 | Msa0979350:CDS | 25.0% |
| ! | AAGTGATTATGAAAAAGCTA+GGG | - | chr6_4:16066644-16066663 | Msa0979350:CDS | 25.0% |
| TGAAAATTCAGTTATTGGTG+CGG | - | chr6_4:16063919-16063938 | Msa0979350:three_prime_UTR | 30.0% | |
| CCATGATTCTTTATCACTAA+AGG | + | chr6_4:16063963-16063982 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr6_4:16063960-16063979 | Msa0979350:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr6_4:16063970-16063989 | Msa0979350:exon | 30.0% | |
| CGTTATGCTTGTAATAAAGA+AGG | - | chr6_4:16064124-16064143 | Msa0979350:CDS | 30.0% | |
| GTCTGCTTAATCCTAAAAAT+AGG | - | chr6_4:16064161-16064180 | Msa0979350:CDS | 30.0% | |
| TTCTCATACTCAACAAGAAT+TGG | + | chr6_4:16064202-16064221 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr6_4:16064225-16064244 | Msa0979350:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr6_4:16064258-16064277 | Msa0979350:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr6_4:16064337-16064356 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | chr6_4:16064439-16064458 | Msa0979350:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr6_4:16064483-16064502 | Msa0979350:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr6_4:16064493-16064512 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr6_4:16064679-16064698 | Msa0979350:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr6_4:16064815-16064834 | Msa0979350:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr6_4:16064840-16064859 | Msa0979350:CDS | 30.0% | |
| CACAAATTCTAAGTCAAGAT+AGG | + | chr6_4:16064941-16064960 | None:intergenic | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr6_4:16064974-16064993 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr6_4:16065132-16065151 | Msa0979350:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr6_4:16065218-16065237 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr6_4:16065332-16065351 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr6_4:16065382-16065401 | Msa0979350:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr6_4:16065439-16065458 | Msa0979350:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr6_4:16065524-16065543 | Msa0979350:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr6_4:16065525-16065544 | Msa0979350:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr6_4:16065735-16065754 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr6_4:16065869-16065888 | None:intergenic | 30.0% | |
| CTCCTCAAAATAGTATTTGA+AGG | + | chr6_4:16065929-16065948 | None:intergenic | 30.0% | |
| !! | CTTCAAATACTATTTTGAGG+AGG | - | chr6_4:16065927-16065946 | Msa0979350:intron | 30.0% |
| ! | GGTTTCAAATGTTGATGTTT+TGG | - | chr6_4:16066047-16066066 | Msa0979350:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr6_4:16066097-16066116 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr6_4:16066098-16066117 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr6_4:16066109-16066128 | Msa0979350:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr6_4:16066110-16066129 | Msa0979350:CDS | 30.0% |
| !!! | TTCAAGATTTTGGAGTTCTT+AGG | - | chr6_4:16066216-16066235 | Msa0979350:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr6_4:16066274-16066293 | Msa0979350:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr6_4:16066441-16066460 | Msa0979350:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr6_4:16066489-16066508 | Msa0979350:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr6_4:16066597-16066616 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr6_4:16066604-16066623 | Msa0979350:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr6_4:16066615-16066634 | None:intergenic | 30.0% | |
| GAAGCAAAATAAAGATGATG+AGG | - | chr6_4:16066695-16066714 | Msa0979350:CDS | 30.0% | |
| ATAAGTTAGGAAAGATGATG+AGG | - | chr6_4:16066757-16066776 | Msa0979350:CDS | 30.0% | |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | - | chr6_4:16066775-16066794 | Msa0979350:CDS | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | - | chr6_4:16063856-16063875 | Msa0979350:three_prime_UTR | 35.0% |
| ATATCAACTTCATCTGAGAG+TGG | - | chr6_4:16063884-16063903 | Msa0979350:three_prime_UTR | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr6_4:16064041-16064060 | Msa0979350:CDS | 35.0% | |
| !! | TCACATGTTGGCCTATTTTT+AGG | + | chr6_4:16064175-16064194 | None:intergenic | 35.0% |
| AGAATTGGATTGTCACATGT+TGG | + | chr6_4:16064187-16064206 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr6_4:16064219-16064238 | Msa0979350:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr6_4:16064224-16064243 | Msa0979350:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr6_4:16064376-16064395 | Msa0979350:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr6_4:16064438-16064457 | Msa0979350:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr6_4:16064519-16064538 | Msa0979350:CDS | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr6_4:16065235-16065254 | Msa0979350:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr6_4:16065278-16065297 | Msa0979350:CDS | 35.0% |
| !!! | GTTTTTCAAGGTGTTTTCCA+TGG | - | chr6_4:16065394-16065413 | Msa0979350:CDS | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr6_4:16065611-16065630 | Msa0979350:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr6_4:16065624-16065643 | Msa0979350:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr6_4:16065694-16065713 | Msa0979350:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr6_4:16065764-16065783 | Msa0979350:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr6_4:16065765-16065784 | Msa0979350:intron | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | + | chr6_4:16066099-16066118 | None:intergenic | 35.0% | |
| !!! | AAGATTTTGGAGTTCTTAGG+TGG | - | chr6_4:16066219-16066238 | Msa0979350:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr6_4:16066276-16066295 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr6_4:16066277-16066296 | Msa0979350:CDS | 35.0% |
| CTGAAATCTACCATGAATGT+TGG | - | chr6_4:16066330-16066349 | Msa0979350:CDS | 35.0% | |
| GACAGAAATTCCTTATAGCT+CGG | - | chr6_4:16066670-16066689 | Msa0979350:CDS | 35.0% | |
| ! | GAGGCTTTAACAATTTAAGC+AGG | - | chr6_4:16066714-16066733 | Msa0979350:CDS | 35.0% |
| !! | TCTTATGAAGTGATGGGTGA+AGG | - | chr6_4:16064445-16064464 | Msa0979350:CDS | 40.0% |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr6_4:16064649-16064668 | Msa0979350:CDS | 40.0% |
| ! | TGGTTTAGAATTGAAGGCTC+TGG | - | chr6_4:16064821-16064840 | Msa0979350:CDS | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr6_4:16065068-16065087 | Msa0979350:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr6_4:16065072-16065091 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr6_4:16065202-16065221 | Msa0979350:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr6_4:16065343-16065362 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr6_4:16065342-16065361 | Msa0979350:CDS | 40.0% | |
| ! | TTTTCCATGGTCTTTGCTCA+TGG | - | chr6_4:16065407-16065426 | Msa0979350:CDS | 40.0% |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | + | chr6_4:16065583-16065602 | None:intergenic | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr6_4:16065623-16065642 | Msa0979350:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr6_4:16065730-16065749 | None:intergenic | 40.0% | |
| ! | GAGGGATAATCATGCTGATT+TGG | - | chr6_4:16065783-16065802 | Msa0979350:intron | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | - | chr6_4:16065792-16065811 | Msa0979350:intron | 40.0% |
| TTTGAGGAGGACACAACAAA+AGG | - | chr6_4:16065940-16065959 | Msa0979350:intron | 40.0% | |
| TTGAGGAGGACACAACAAAA+GGG | - | chr6_4:16065941-16065960 | Msa0979350:intron | 40.0% | |
| !! | GTTTTGGATGCAGAACTTGA+AGG | - | chr6_4:16066063-16066082 | Msa0979350:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr6_4:16066172-16066191 | Msa0979350:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr6_4:16066173-16066192 | Msa0979350:CDS | 40.0% | |
| CATGTAGACATAAGAAACCC+CGG | + | chr6_4:16066194-16066213 | None:intergenic | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | + | chr6_4:16066318-16066337 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr6_4:16066343-16066362 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr6_4:16066367-16066386 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr6_4:16066452-16066471 | Msa0979350:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr6_4:16066535-16066554 | None:intergenic | 40.0% |
| ! | ACTGCTTCTGAAGACTTAGA+AGG | + | chr6_4:16066543-16066562 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr6_4:16066621-16066640 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr6_4:16066683-16066702 | None:intergenic | 40.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr6_4:16064229-16064248 | Msa0979350:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr6_4:16064238-16064257 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr6_4:16064241-16064260 | Msa0979350:CDS | 45.0% |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr6_4:16064525-16064544 | Msa0979350:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr6_4:16064528-16064547 | Msa0979350:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr6_4:16064627-16064646 | None:intergenic | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | - | chr6_4:16064954-16064973 | Msa0979350:CDS | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | - | chr6_4:16065578-16065597 | Msa0979350:intron | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr6_4:16065629-16065648 | Msa0979350:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr6_4:16065646-16065665 | Msa0979350:intron | 45.0% |
| ATCCCAACAGTCAGCTTATG+TGG | - | chr6_4:16065842-16065861 | Msa0979350:intron | 45.0% | |
| GACCACATAAGCTGACTGTT+GGG | + | chr6_4:16065847-16065866 | None:intergenic | 45.0% | |
| TTGAAGGAAACCTTTCCCCA+AGG | - | chr6_4:16066079-16066098 | Msa0979350:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr6_4:16066092-16066111 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr6_4:16066174-16066193 | Msa0979350:CDS | 45.0% | |
| CGCAAACACTTGTAGAAAGC+TGG | + | chr6_4:16066410-16066429 | None:intergenic | 45.0% | |
| TACAAGTGTTTGCGCAGATG+CGG | - | chr6_4:16066416-16066435 | Msa0979350:CDS | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr6_4:16066464-16066483 | Msa0979350:CDS | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | - | chr6_4:16066565-16066584 | Msa0979350:CDS | 45.0% | |
| CTCAAGTAGCGCAAATGCTC+TGG | + | chr6_4:16064349-16064368 | None:intergenic | 50.0% | |
| !! | GAAGTGATGGGTGAAGGTGT+TGG | - | chr6_4:16064451-16064470 | Msa0979350:CDS | 50.0% |
| ACCATATACACAGACCAGGC+TGG | - | chr6_4:16065346-16065365 | Msa0979350:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr6_4:16065350-16065369 | None:intergenic | 50.0% | |
| TGTGCCATGAGCAAAGACCA+TGG | + | chr6_4:16065414-16065433 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr6_4:16065414-16065433 | Msa0979350:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr6_4:16065415-16065434 | Msa0979350:CDS | 50.0% | |
| GGACCACATAAGCTGACTGT+TGG | + | chr6_4:16065848-16065867 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | - | chr6_4:16066130-16066149 | Msa0979350:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr6_4:16066457-16066476 | Msa0979350:CDS | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | - | chr6_4:16066564-16066583 | Msa0979350:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr6_4:16066579-16066598 | None:intergenic | 50.0% |
| !! | GTGATGGGTGAAGGTGTTGG+AGG | - | chr6_4:16064454-16064473 | Msa0979350:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr6_4:16064532-16064551 | Msa0979350:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr6_4:16065363-16065382 | None:intergenic | 55.0% | |
| AAGTGTTTGCGCAGATGCGG+AGG | - | chr6_4:16066419-16066438 | Msa0979350:CDS | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr6_4:16066456-16066475 | Msa0979350:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr6_4:16066470-16066489 | Msa0979350:CDS | 55.0% | |
| !! | GGGTGAAGGTGTTGGAGGCA+CGG | - | chr6_4:16064459-16064478 | Msa0979350:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 16063830 | 16066883 | 16063830 | ID=Msa0979350;Name=Msa0979350 |
| chr6_4 | mRNA | 16063830 | 16066883 | 16063830 | ID=Msa0979350-mRNA-1;Parent=Msa0979350;Name=Msa0979350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|152|800 |
| chr6_4 | exon | 16063830 | 16065501 | 16063830 | ID=Msa0979350-mRNA-1:exon:5200;Parent=Msa0979350-mRNA-1 |
| chr6_4 | exon | 16065956 | 16066883 | 16065956 | ID=Msa0979350-mRNA-1:exon:5199;Parent=Msa0979350-mRNA-1 |
| chr6_4 | five_prime_UTR | 16066839 | 16066883 | 16066839 | ID=Msa0979350-mRNA-1:five_prime_utr;Parent=Msa0979350-mRNA-1 |
| chr6_4 | CDS | 16065956 | 16066838 | 16065956 | ID=Msa0979350-mRNA-1:cds;Parent=Msa0979350-mRNA-1 |
| chr6_4 | CDS | 16063982 | 16065501 | 16063982 | ID=Msa0979350-mRNA-1:cds;Parent=Msa0979350-mRNA-1 |
| chr6_4 | three_prime_UTR | 16063830 | 16063981 | 16063830 | ID=Msa0979350-mRNA-1:three_prime_utr;Parent=Msa0979350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
