Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982450 | GAU43525.1 | 52.459 | 244 | 69 | 6 | 15 | 212 | 6 | 248 | 2.63e-68 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982450 | A0A2Z6P5U6 | 52.459 | 244 | 69 | 6 | 15 | 212 | 6 | 248 | 1.26e-68 | 219 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0982450 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982450 | MtrunA17_Chr3g0077451 | 48.523 | 237 | 84 | 5 | 13 | 212 | 5 | 240 | 5.71e-68 | 208 |
| Msa0982450 | MtrunA17_Chr5g0429931 | 48.133 | 241 | 80 | 5 | 17 | 212 | 8 | 248 | 1.40e-66 | 205 |
| Msa0982450 | MtrunA17_Chr3g0077431 | 53.403 | 191 | 70 | 3 | 40 | 212 | 12 | 201 | 5.99e-66 | 202 |
| Msa0982450 | MtrunA17_Chr3g0077421 | 53.158 | 190 | 69 | 3 | 40 | 210 | 12 | 200 | 9.96e-64 | 196 |
| Msa0982450 | MtrunA17_Chr3g0077441 | 53.158 | 190 | 69 | 3 | 40 | 210 | 12 | 200 | 9.96e-64 | 196 |
| Msa0982450 | MtrunA17_Chr3g0077411 | 43.725 | 247 | 86 | 4 | 19 | 212 | 277 | 523 | 2.21e-53 | 178 |
| Msa0982450 | MtrunA17_Chr3g0077411 | 40.686 | 204 | 99 | 6 | 19 | 200 | 40 | 243 | 6.37e-35 | 129 |
| Msa0982450 | MtrunA17_Chr3g0077461 | 42.466 | 219 | 90 | 8 | 19 | 204 | 252 | 467 | 1.02e-44 | 154 |
| Msa0982450 | MtrunA17_Chr3g0077461 | 42.918 | 233 | 103 | 8 | 4 | 211 | 3 | 230 | 6.65e-44 | 152 |
| Msa0982450 | MtrunA17_Chr3g0077361 | 39.640 | 222 | 88 | 6 | 19 | 212 | 304 | 507 | 6.64e-36 | 131 |
| Msa0982450 | MtrunA17_Chr3g0077361 | 41.429 | 210 | 98 | 6 | 19 | 203 | 55 | 264 | 1.49e-35 | 130 |
| Msa0982450 | MtrunA17_Chr4g0009491 | 42.000 | 200 | 91 | 7 | 10 | 185 | 3 | 201 | 6.33e-33 | 122 |
| Msa0982450 | MtrunA17_Chr4g0009491 | 39.791 | 191 | 69 | 4 | 19 | 164 | 240 | 429 | 3.68e-31 | 118 |
| Msa0982450 | MtrunA17_Chr3g0077381 | 42.077 | 183 | 69 | 4 | 19 | 164 | 262 | 444 | 3.40e-32 | 120 |
| Msa0982450 | MtrunA17_Chr3g0077381 | 38.636 | 220 | 90 | 7 | 8 | 203 | 24 | 222 | 3.99e-28 | 110 |
| Msa0982450 | MtrunA17_Chr5g0421921 | 48.837 | 86 | 42 | 2 | 128 | 212 | 30 | 114 | 4.38e-20 | 81.6 |
| Msa0982450 | MtrunA17_Chr5g0421731 | 48.837 | 86 | 42 | 2 | 128 | 212 | 30 | 114 | 4.38e-20 | 81.6 |
| Msa0982450 | MtrunA17_Chr5g0421851 | 48.837 | 86 | 42 | 2 | 128 | 212 | 105 | 189 | 6.93e-19 | 80.9 |
| Msa0982450 | MtrunA17_Chr1g0162441 | 42.353 | 85 | 46 | 2 | 128 | 211 | 315 | 397 | 3.07e-11 | 62.0 |
| Msa0982450 | MtrunA17_Chr4g0033961 | 42.857 | 84 | 43 | 3 | 128 | 209 | 311 | 391 | 4.99e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCTCTCCATGAGAATTT+TGG | 0.185651 | 6_4:-22112013 | None:intergenic |
| CATGAATTTATAACAAGATT+TGG | 0.235916 | 6_4:+22110601 | Msa0982450:CDS |
| CTTTATTTGCATTGTACCTT+TGG | 0.273221 | 6_4:-22112063 | None:intergenic |
| CTCAAAACTCCCAGTACTAA+TGG | 0.335837 | 6_4:+22110842 | Msa0982450:CDS |
| GCTTGGCTCTCCATTAGTAC+TGG | 0.344198 | 6_4:-22110852 | None:intergenic |
| TTGTTCCCGATGGTCAAGTA+TGG | 0.365062 | 6_4:+22110657 | Msa0982450:CDS |
| TGACATTCATGTGAAGCAAC+AGG | 0.412146 | 6_4:+22110919 | Msa0982450:CDS |
| TACTTGACTTTCAAATATGA+AGG | 0.430120 | 6_4:+22110761 | Msa0982450:CDS |
| GGATTATGACACTTTGTGCT+TGG | 0.453374 | 6_4:-22110869 | None:intergenic |
| CTTGGCTCTCCATTAGTACT+GGG | 0.477667 | 6_4:-22110851 | None:intergenic |
| ATTATTATACTATTGAAAAG+AGG | 0.493576 | 6_4:-22110547 | None:intergenic |
| AGGTACAATGCAAATAAAGA+AGG | 0.498583 | 6_4:+22112067 | Msa0982450:CDS |
| TATGGAGAAACGTGGTGGGC+AGG | 0.502150 | 6_4:+22110675 | Msa0982450:CDS |
| TTTCTCCATACTTGACCATC+GGG | 0.503280 | 6_4:-22110662 | None:intergenic |
| TTGGAACATTTGACTTCAGA+TGG | 0.505390 | 6_4:-22111983 | None:intergenic |
| AGATTATTGCGTGTTTGAGC+TGG | 0.505745 | 6_4:+22112130 | Msa0982450:CDS |
| ATAAAGCTCCAAAATTCTCA+TGG | 0.514793 | 6_4:+22112005 | Msa0982450:CDS |
| AGTGTCATAATCCTAGCAAA+AGG | 0.515842 | 6_4:+22110879 | Msa0982450:CDS |
| AGGGACAACAATATGTCAGC+TGG | 0.526202 | 6_4:+22112107 | Msa0982450:CDS |
| TAATCCTAGCAAAAGGATCA+AGG | 0.532746 | 6_4:+22110886 | Msa0982450:CDS |
| TTATTATACTATTGAAAAGA+GGG | 0.537451 | 6_4:-22110546 | None:intergenic |
| TGAGCTGGTCGAGAAGAATC+CGG | 0.538768 | 6_4:+22112145 | Msa0982450:CDS |
| GTTTCTCCATACTTGACCAT+CGG | 0.554283 | 6_4:-22110663 | None:intergenic |
| ACTTGACTTTCAAATATGAA+GGG | 0.557534 | 6_4:+22110762 | Msa0982450:CDS |
| GCTACAATTATTGTTCCCGA+TGG | 0.558463 | 6_4:+22110647 | Msa0982450:CDS |
| TGTGTATCTTATGATTCCAA+AGG | 0.564349 | 6_4:+22112047 | Msa0982450:CDS |
| GACATTCATGTGAAGCAACA+GGG | 0.566176 | 6_4:+22110920 | Msa0982450:CDS |
| AATCTTGTTATAAATTCATG+TGG | 0.574737 | 6_4:-22110598 | None:intergenic |
| AAATTCTCATGGAGAGCAGT+GGG | 0.586451 | 6_4:+22112016 | Msa0982450:CDS |
| GGTACAATGCAAATAAAGAA+GGG | 0.587793 | 6_4:+22112068 | Msa0982450:CDS |
| CAAGTATGGAGAAACGTGGT+GGG | 0.604544 | 6_4:+22110671 | Msa0982450:CDS |
| AAAATTCTCATGGAGAGCAG+TGG | 0.606270 | 6_4:+22112015 | Msa0982450:CDS |
| ACTATTCTATAGAATACGGT+CGG | 0.626032 | 6_4:+22110734 | Msa0982450:intron |
| AAGCATATCTGAAAGAGCAA+AGG | 0.626737 | 6_4:+22110946 | Msa0982450:CDS |
| TCAAGTATGGAGAAACGTGG+TGG | 0.659963 | 6_4:+22110670 | Msa0982450:CDS |
| ACATTCATGTGAAGCAACAG+GGG | 0.665285 | 6_4:+22110921 | Msa0982450:CDS |
| GCTGGTCGAGAAGAATCCGG+TGG | 0.731524 | 6_4:+22112148 | Msa0982450:CDS |
| TGGTCAAGTATGGAGAAACG+TGG | 0.754990 | 6_4:+22110667 | Msa0982450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAATTTTTAAGTTAATTT+AGG | - | chr6_4:22110475-22110494 | None:intergenic | 10.0% |
| !!! | CAAAATTTTTAAGTTAATTT+AGG | - | chr6_4:22110475-22110494 | None:intergenic | 10.0% |
| !! | TTATTATACTATTGAAAAGA+GGG | - | chr6_4:22110549-22110568 | None:intergenic | 15.0% |
| !! | ATTATTATACTATTGAAAAG+AGG | - | chr6_4:22110550-22110569 | None:intergenic | 15.0% |
| !!! | TTTATTTTACCTTTCAAAAA+AGG | + | chr6_4:22111062-22111081 | Msa0982450:intron | 15.0% |
| !! | ATAATTCTAATGTTATTGAA+GGG | - | chr6_4:22111165-22111184 | None:intergenic | 15.0% |
| !! | AATAATTCTAATGTTATTGA+AGG | - | chr6_4:22111166-22111185 | None:intergenic | 15.0% |
| !! | TTATCTTTATATCAATAGAT+TGG | + | chr6_4:22111265-22111284 | Msa0982450:intron | 15.0% |
| !! | TTATTATACTATTGAAAAGA+GGG | - | chr6_4:22110549-22110568 | None:intergenic | 15.0% |
| !! | ATTATTATACTATTGAAAAG+AGG | - | chr6_4:22110550-22110569 | None:intergenic | 15.0% |
| !!! | TTTATTTTACCTTTCAAAAA+AGG | + | chr6_4:22111062-22111081 | Msa0982450:intron | 15.0% |
| !! | ATAATTCTAATGTTATTGAA+GGG | - | chr6_4:22111165-22111184 | None:intergenic | 15.0% |
| !! | AATAATTCTAATGTTATTGA+AGG | - | chr6_4:22111166-22111185 | None:intergenic | 15.0% |
| !! | TTATCTTTATATCAATAGAT+TGG | + | chr6_4:22111265-22111284 | Msa0982450:intron | 15.0% |
| !!! | AATCTTGTTATAAATTCATG+TGG | - | chr6_4:22110601-22110620 | None:intergenic | 20.0% |
| !! | CATGAATTTATAACAAGATT+TGG | + | chr6_4:22110601-22110620 | Msa0982450:CDS | 20.0% |
| !! | GATTACTATTCTATAGAATA+CGG | + | chr6_4:22110730-22110749 | Msa0982450:intron | 20.0% |
| !! | TTTCACATTAAAATAGTAGA+TGG | + | chr6_4:22110993-22111012 | Msa0982450:intron | 20.0% |
| !!! | ATTTTAATGCCTTTTTTGAA+AGG | - | chr6_4:22111074-22111093 | None:intergenic | 20.0% |
| !!! | CTCGCATTTTTTTTTTTTTT+TGG | + | chr6_4:22111098-22111117 | Msa0982450:intron | 20.0% |
| !! | TCCTTTATCTTTATATCAAA+AGG | + | chr6_4:22111185-22111204 | Msa0982450:intron | 20.0% |
| !!! | ACCTTTTGATATAAAGATAA+AGG | - | chr6_4:22111189-22111208 | None:intergenic | 20.0% |
| !! | TTGATATAAAGATAATAACG+AGG | - | chr6_4:22111260-22111279 | None:intergenic | 20.0% |
| !! | AATAGTTTCTTAATTGAGAA+AGG | + | chr6_4:22111402-22111421 | Msa0982450:intron | 20.0% |
| !! | ACGTCAGTAAAAAAAAAAAA+GGG | - | chr6_4:22111445-22111464 | None:intergenic | 20.0% |
| !! | AACGTCAGTAAAAAAAAAAA+AGG | - | chr6_4:22111446-22111465 | None:intergenic | 20.0% |
| !!! | AAAGCAAAAGAAGTTTTTAT+GGG | - | chr6_4:22111661-22111680 | None:intergenic | 20.0% |
| !!! | AAAAGCAAAAGAAGTTTTTA+TGG | - | chr6_4:22111662-22111681 | None:intergenic | 20.0% |
| !!! | GAGTTTTACTTTATAGTTTT+TGG | + | chr6_4:22111872-22111891 | Msa0982450:intron | 20.0% |
| !!! | AATCTTGTTATAAATTCATG+TGG | - | chr6_4:22110601-22110620 | None:intergenic | 20.0% |
| !! | CATGAATTTATAACAAGATT+TGG | + | chr6_4:22110601-22110620 | Msa0982450:CDS | 20.0% |
| !! | GATTACTATTCTATAGAATA+CGG | + | chr6_4:22110730-22110749 | Msa0982450:intron | 20.0% |
| !! | TTTCACATTAAAATAGTAGA+TGG | + | chr6_4:22110993-22111012 | Msa0982450:intron | 20.0% |
| !!! | ATTTTAATGCCTTTTTTGAA+AGG | - | chr6_4:22111074-22111093 | None:intergenic | 20.0% |
| !!! | CTCGCATTTTTTTTTTTTTT+TGG | + | chr6_4:22111098-22111117 | Msa0982450:intron | 20.0% |
| !! | TCCTTTATCTTTATATCAAA+AGG | + | chr6_4:22111185-22111204 | Msa0982450:intron | 20.0% |
| !!! | ACCTTTTGATATAAAGATAA+AGG | - | chr6_4:22111189-22111208 | None:intergenic | 20.0% |
| !! | TTGATATAAAGATAATAACG+AGG | - | chr6_4:22111260-22111279 | None:intergenic | 20.0% |
| !! | AATAGTTTCTTAATTGAGAA+AGG | + | chr6_4:22111402-22111421 | Msa0982450:intron | 20.0% |
| !! | ACGTCAGTAAAAAAAAAAAA+GGG | - | chr6_4:22111445-22111464 | None:intergenic | 20.0% |
| !! | AACGTCAGTAAAAAAAAAAA+AGG | - | chr6_4:22111446-22111465 | None:intergenic | 20.0% |
| !!! | AAAGCAAAAGAAGTTTTTAT+GGG | - | chr6_4:22111661-22111680 | None:intergenic | 20.0% |
| !!! | AAAAGCAAAAGAAGTTTTTA+TGG | - | chr6_4:22111662-22111681 | None:intergenic | 20.0% |
| !!! | GAGTTTTACTTTATAGTTTT+TGG | + | chr6_4:22111872-22111891 | Msa0982450:intron | 20.0% |
| ! | TACTTGACTTTCAAATATGA+AGG | + | chr6_4:22110761-22110780 | Msa0982450:CDS | 25.0% |
| ! | ACTTGACTTTCAAATATGAA+GGG | + | chr6_4:22110762-22110781 | Msa0982450:CDS | 25.0% |
| !! | AATTTAACTCGCATTTTACT+TGG | + | chr6_4:22111126-22111145 | Msa0982450:intron | 25.0% |
| ! | CATATAATAACGCTCAAAAT+GGG | - | chr6_4:22111237-22111256 | None:intergenic | 25.0% |
| !!! | TACTAGCCTATTTGTTTTAT+CGG | + | chr6_4:22111307-22111326 | Msa0982450:intron | 25.0% |
| ! | GAATTTCCGATAAAACAAAT+AGG | - | chr6_4:22111316-22111335 | None:intergenic | 25.0% |
| ! | TATATAAAGTCCTTAAAGAG+TGG | - | chr6_4:22111355-22111374 | None:intergenic | 25.0% |
| ! | GTCAGTAAAAAAAAAAAAGG+GGG | - | chr6_4:22111443-22111462 | None:intergenic | 25.0% |
| ! | CGTCAGTAAAAAAAAAAAAG+GGG | - | chr6_4:22111444-22111463 | None:intergenic | 25.0% |
| ! | TATAAAGAATGTGAGATGAA+GGG | - | chr6_4:22111562-22111581 | None:intergenic | 25.0% |
| ! | ATATAAAGAATGTGAGATGA+AGG | - | chr6_4:22111563-22111582 | None:intergenic | 25.0% |
| ! | CAAATAAAGAATGTTAGCAA+TGG | - | chr6_4:22111586-22111605 | None:intergenic | 25.0% |
| ! | AGGAACAAAAAAGAAAGAAA+TGG | - | chr6_4:22111707-22111726 | None:intergenic | 25.0% |
| ! | AAATCATGTCTAAAAGAGTA+AGG | + | chr6_4:22111776-22111795 | Msa0982450:intron | 25.0% |
| ! | AATCATGTCTAAAAGAGTAA+GGG | + | chr6_4:22111777-22111796 | Msa0982450:intron | 25.0% |
| !!! | GAAAGGAAATAAGGATTTTT+TGG | - | chr6_4:22111823-22111842 | None:intergenic | 25.0% |
| !! | AGGGATTTTCTATATTTCAA+AGG | + | chr6_4:22112087-22112106 | Msa0982450:CDS | 25.0% |
| !! | GGGATTTTCTATATTTCAAA+GGG | + | chr6_4:22112088-22112107 | Msa0982450:CDS | 25.0% |
| ! | TACTTGACTTTCAAATATGA+AGG | + | chr6_4:22110761-22110780 | Msa0982450:CDS | 25.0% |
| ! | ACTTGACTTTCAAATATGAA+GGG | + | chr6_4:22110762-22110781 | Msa0982450:CDS | 25.0% |
| !! | AATTTAACTCGCATTTTACT+TGG | + | chr6_4:22111126-22111145 | Msa0982450:intron | 25.0% |
| ! | CATATAATAACGCTCAAAAT+GGG | - | chr6_4:22111237-22111256 | None:intergenic | 25.0% |
| !!! | TACTAGCCTATTTGTTTTAT+CGG | + | chr6_4:22111307-22111326 | Msa0982450:intron | 25.0% |
| ! | GAATTTCCGATAAAACAAAT+AGG | - | chr6_4:22111316-22111335 | None:intergenic | 25.0% |
| ! | TATATAAAGTCCTTAAAGAG+TGG | - | chr6_4:22111355-22111374 | None:intergenic | 25.0% |
| ! | GTCAGTAAAAAAAAAAAAGG+GGG | - | chr6_4:22111443-22111462 | None:intergenic | 25.0% |
| ! | CGTCAGTAAAAAAAAAAAAG+GGG | - | chr6_4:22111444-22111463 | None:intergenic | 25.0% |
| ! | TATAAAGAATGTGAGATGAA+GGG | - | chr6_4:22111562-22111581 | None:intergenic | 25.0% |
| ! | ATATAAAGAATGTGAGATGA+AGG | - | chr6_4:22111563-22111582 | None:intergenic | 25.0% |
| ! | CAAATAAAGAATGTTAGCAA+TGG | - | chr6_4:22111586-22111605 | None:intergenic | 25.0% |
| ! | AGGAACAAAAAAGAAAGAAA+TGG | - | chr6_4:22111707-22111726 | None:intergenic | 25.0% |
| ! | AAATCATGTCTAAAAGAGTA+AGG | + | chr6_4:22111776-22111795 | Msa0982450:intron | 25.0% |
| ! | AATCATGTCTAAAAGAGTAA+GGG | + | chr6_4:22111777-22111796 | Msa0982450:intron | 25.0% |
| !!! | GAAAGGAAATAAGGATTTTT+TGG | - | chr6_4:22111823-22111842 | None:intergenic | 25.0% |
| !! | AGGGATTTTCTATATTTCAA+AGG | + | chr6_4:22112087-22112106 | Msa0982450:CDS | 25.0% |
| !! | GGGATTTTCTATATTTCAAA+GGG | + | chr6_4:22112088-22112107 | Msa0982450:CDS | 25.0% |
| ! | AGGTTTTCTTTTGCAACAAA+TGG | + | chr6_4:22110695-22110714 | Msa0982450:intron | 30.0% |
| ACTATTCTATAGAATACGGT+CGG | + | chr6_4:22110734-22110753 | Msa0982450:intron | 30.0% | |
| GCATATAATAACGCTCAAAA+TGG | - | chr6_4:22111238-22111257 | None:intergenic | 30.0% | |
| ! | CATTAATTTTGTGAACCGAT+GGG | + | chr6_4:22111473-22111492 | Msa0982450:intron | 30.0% |
| ACAAGATCAGTGTAAACATT+AGG | - | chr6_4:22111620-22111639 | None:intergenic | 30.0% | |
| TGACACTCATTTGTAACAAT+AGG | + | chr6_4:22111750-22111769 | Msa0982450:intron | 30.0% | |
| !!! | ATTTTTTGGCTTGAATGCTT+CGG | - | chr6_4:22111809-22111828 | None:intergenic | 30.0% |
| !! | GTGCATTTTGAAAGGAAATA+AGG | - | chr6_4:22111832-22111851 | None:intergenic | 30.0% |
| TTTCCTTTCAAAATGCACAA+AGG | + | chr6_4:22111834-22111853 | Msa0982450:intron | 30.0% | |
| TTCCTTTCAAAATGCACAAA+GGG | + | chr6_4:22111835-22111854 | Msa0982450:intron | 30.0% | |
| !!! | TGAGAATTTTGGAGCTTTAT+TGG | - | chr6_4:22112005-22112024 | None:intergenic | 30.0% |
| ATAAAGCTCCAAAATTCTCA+TGG | + | chr6_4:22112005-22112024 | Msa0982450:CDS | 30.0% | |
| TGTGTATCTTATGATTCCAA+AGG | + | chr6_4:22112047-22112066 | Msa0982450:CDS | 30.0% | |
| ! | CTTTATTTGCATTGTACCTT+TGG | - | chr6_4:22112066-22112085 | None:intergenic | 30.0% |
| AGGTACAATGCAAATAAAGA+AGG | + | chr6_4:22112067-22112086 | Msa0982450:CDS | 30.0% | |
| GGTACAATGCAAATAAAGAA+GGG | + | chr6_4:22112068-22112087 | Msa0982450:CDS | 30.0% | |
| ! | AGGTTTTCTTTTGCAACAAA+TGG | + | chr6_4:22110695-22110714 | Msa0982450:intron | 30.0% |
| ACTATTCTATAGAATACGGT+CGG | + | chr6_4:22110734-22110753 | Msa0982450:intron | 30.0% | |
| GCATATAATAACGCTCAAAA+TGG | - | chr6_4:22111238-22111257 | None:intergenic | 30.0% | |
| ! | CATTAATTTTGTGAACCGAT+GGG | + | chr6_4:22111473-22111492 | Msa0982450:intron | 30.0% |
| ACAAGATCAGTGTAAACATT+AGG | - | chr6_4:22111620-22111639 | None:intergenic | 30.0% | |
| TGACACTCATTTGTAACAAT+AGG | + | chr6_4:22111750-22111769 | Msa0982450:intron | 30.0% | |
| !!! | ATTTTTTGGCTTGAATGCTT+CGG | - | chr6_4:22111809-22111828 | None:intergenic | 30.0% |
| !! | GTGCATTTTGAAAGGAAATA+AGG | - | chr6_4:22111832-22111851 | None:intergenic | 30.0% |
| TTTCCTTTCAAAATGCACAA+AGG | + | chr6_4:22111834-22111853 | Msa0982450:intron | 30.0% | |
| TTCCTTTCAAAATGCACAAA+GGG | + | chr6_4:22111835-22111854 | Msa0982450:intron | 30.0% | |
| !!! | TGAGAATTTTGGAGCTTTAT+TGG | - | chr6_4:22112005-22112024 | None:intergenic | 30.0% |
| ATAAAGCTCCAAAATTCTCA+TGG | + | chr6_4:22112005-22112024 | Msa0982450:CDS | 30.0% | |
| TGTGTATCTTATGATTCCAA+AGG | + | chr6_4:22112047-22112066 | Msa0982450:CDS | 30.0% | |
| ! | CTTTATTTGCATTGTACCTT+TGG | - | chr6_4:22112066-22112085 | None:intergenic | 30.0% |
| AGGTACAATGCAAATAAAGA+AGG | + | chr6_4:22112067-22112086 | Msa0982450:CDS | 30.0% | |
| GGTACAATGCAAATAAAGAA+GGG | + | chr6_4:22112068-22112087 | Msa0982450:CDS | 30.0% | |
| AGTGTCATAATCCTAGCAAA+AGG | + | chr6_4:22110879-22110898 | Msa0982450:CDS | 35.0% | |
| TAATCCTAGCAAAAGGATCA+AGG | + | chr6_4:22110886-22110905 | Msa0982450:CDS | 35.0% | |
| AAGCATATCTGAAAGAGCAA+AGG | + | chr6_4:22110946-22110965 | Msa0982450:CDS | 35.0% | |
| ! | GCATTAATTTTGTGAACCGA+TGG | + | chr6_4:22111472-22111491 | Msa0982450:intron | 35.0% |
| AAAAGTTGTCCAATTCCCAT+CGG | - | chr6_4:22111491-22111510 | None:intergenic | 35.0% | |
| ! | GAAGTTTTTATGGGAAAGAG+AGG | - | chr6_4:22111652-22111671 | None:intergenic | 35.0% |
| !! | TACAAATGAGTGTCACTTGA+CGG | - | chr6_4:22111745-22111764 | None:intergenic | 35.0% |
| ! | TTCCCTTTGTGCATTTTGAA+AGG | - | chr6_4:22111840-22111859 | None:intergenic | 35.0% |
| ATGCACAAAGGGAAATTAAG+CGG | + | chr6_4:22111846-22111865 | Msa0982450:intron | 35.0% | |
| AGAAGTAACATACTGCACAA+TGG | - | chr6_4:22111949-22111968 | None:intergenic | 35.0% | |
| ! | TTGGAACATTTGACTTCAGA+TGG | - | chr6_4:22111986-22112005 | None:intergenic | 35.0% |
| AGTGTCATAATCCTAGCAAA+AGG | + | chr6_4:22110879-22110898 | Msa0982450:CDS | 35.0% | |
| TAATCCTAGCAAAAGGATCA+AGG | + | chr6_4:22110886-22110905 | Msa0982450:CDS | 35.0% | |
| AAGCATATCTGAAAGAGCAA+AGG | + | chr6_4:22110946-22110965 | Msa0982450:CDS | 35.0% | |
| ! | GCATTAATTTTGTGAACCGA+TGG | + | chr6_4:22111472-22111491 | Msa0982450:intron | 35.0% |
| AAAAGTTGTCCAATTCCCAT+CGG | - | chr6_4:22111491-22111510 | None:intergenic | 35.0% | |
| ! | GAAGTTTTTATGGGAAAGAG+AGG | - | chr6_4:22111652-22111671 | None:intergenic | 35.0% |
| !! | TACAAATGAGTGTCACTTGA+CGG | - | chr6_4:22111745-22111764 | None:intergenic | 35.0% |
| ! | TTCCCTTTGTGCATTTTGAA+AGG | - | chr6_4:22111840-22111859 | None:intergenic | 35.0% |
| ATGCACAAAGGGAAATTAAG+CGG | + | chr6_4:22111846-22111865 | Msa0982450:intron | 35.0% | |
| AGAAGTAACATACTGCACAA+TGG | - | chr6_4:22111949-22111968 | None:intergenic | 35.0% | |
| ! | TTGGAACATTTGACTTCAGA+TGG | - | chr6_4:22111986-22112005 | None:intergenic | 35.0% |
| GCTACAATTATTGTTCCCGA+TGG | + | chr6_4:22110647-22110666 | Msa0982450:CDS | 40.0% | |
| TTTCTCCATACTTGACCATC+GGG | - | chr6_4:22110665-22110684 | None:intergenic | 40.0% | |
| GTTTCTCCATACTTGACCAT+CGG | - | chr6_4:22110666-22110685 | None:intergenic | 40.0% | |
| !!! | TTAGTACTGGGAGTTTTGAG+AGG | - | chr6_4:22110842-22110861 | None:intergenic | 40.0% |
| CTCAAAACTCCCAGTACTAA+TGG | + | chr6_4:22110842-22110861 | Msa0982450:CDS | 40.0% | |
| GGATTATGACACTTTGTGCT+TGG | - | chr6_4:22110872-22110891 | None:intergenic | 40.0% | |
| ! | TCAACCTTGATCCTTTTGCT+AGG | - | chr6_4:22110893-22110912 | None:intergenic | 40.0% |
| TGACATTCATGTGAAGCAAC+AGG | + | chr6_4:22110919-22110938 | Msa0982450:CDS | 40.0% | |
| GACATTCATGTGAAGCAACA+GGG | + | chr6_4:22110920-22110939 | Msa0982450:CDS | 40.0% | |
| ACATTCATGTGAAGCAACAG+GGG | + | chr6_4:22110921-22110940 | Msa0982450:CDS | 40.0% | |
| AGTCCTTAAAGAGTGGCTTA+GGG | - | chr6_4:22111348-22111367 | None:intergenic | 40.0% | |
| AAGTCCTTAAAGAGTGGCTT+AGG | - | chr6_4:22111349-22111368 | None:intergenic | 40.0% | |
| ! | TTTTGTGAACCGATGGGAAT+TGG | + | chr6_4:22111479-22111498 | Msa0982450:intron | 40.0% |
| !! | ACAAATGAGTGTCACTTGAC+GGG | - | chr6_4:22111744-22111763 | None:intergenic | 40.0% |
| CATGTCTAAAAGAGTAAGGG+AGG | + | chr6_4:22111780-22111799 | Msa0982450:intron | 40.0% | |
| ! | ACTGCTCTCCATGAGAATTT+TGG | - | chr6_4:22112016-22112035 | None:intergenic | 40.0% |
| AAAATTCTCATGGAGAGCAG+TGG | + | chr6_4:22112015-22112034 | Msa0982450:CDS | 40.0% | |
| AAATTCTCATGGAGAGCAGT+GGG | + | chr6_4:22112016-22112035 | Msa0982450:CDS | 40.0% | |
| AGATTATTGCGTGTTTGAGC+TGG | + | chr6_4:22112130-22112149 | Msa0982450:CDS | 40.0% | |
| ! | ATTGTGACTTTTAGCACCAC+CGG | - | chr6_4:22112167-22112186 | None:intergenic | 40.0% |
| GCTACAATTATTGTTCCCGA+TGG | + | chr6_4:22110647-22110666 | Msa0982450:CDS | 40.0% | |
| TTTCTCCATACTTGACCATC+GGG | - | chr6_4:22110665-22110684 | None:intergenic | 40.0% | |
| GTTTCTCCATACTTGACCAT+CGG | - | chr6_4:22110666-22110685 | None:intergenic | 40.0% | |
| !!! | TTAGTACTGGGAGTTTTGAG+AGG | - | chr6_4:22110842-22110861 | None:intergenic | 40.0% |
| CTCAAAACTCCCAGTACTAA+TGG | + | chr6_4:22110842-22110861 | Msa0982450:CDS | 40.0% | |
| GGATTATGACACTTTGTGCT+TGG | - | chr6_4:22110872-22110891 | None:intergenic | 40.0% | |
| ! | TCAACCTTGATCCTTTTGCT+AGG | - | chr6_4:22110893-22110912 | None:intergenic | 40.0% |
| TGACATTCATGTGAAGCAAC+AGG | + | chr6_4:22110919-22110938 | Msa0982450:CDS | 40.0% | |
| GACATTCATGTGAAGCAACA+GGG | + | chr6_4:22110920-22110939 | Msa0982450:CDS | 40.0% | |
| ACATTCATGTGAAGCAACAG+GGG | + | chr6_4:22110921-22110940 | Msa0982450:CDS | 40.0% | |
| AGTCCTTAAAGAGTGGCTTA+GGG | - | chr6_4:22111348-22111367 | None:intergenic | 40.0% | |
| AAGTCCTTAAAGAGTGGCTT+AGG | - | chr6_4:22111349-22111368 | None:intergenic | 40.0% | |
| ! | TTTTGTGAACCGATGGGAAT+TGG | + | chr6_4:22111479-22111498 | Msa0982450:intron | 40.0% |
| !! | ACAAATGAGTGTCACTTGAC+GGG | - | chr6_4:22111744-22111763 | None:intergenic | 40.0% |
| CATGTCTAAAAGAGTAAGGG+AGG | + | chr6_4:22111780-22111799 | Msa0982450:intron | 40.0% | |
| ! | ACTGCTCTCCATGAGAATTT+TGG | - | chr6_4:22112016-22112035 | None:intergenic | 40.0% |
| AAAATTCTCATGGAGAGCAG+TGG | + | chr6_4:22112015-22112034 | Msa0982450:CDS | 40.0% | |
| AAATTCTCATGGAGAGCAGT+GGG | + | chr6_4:22112016-22112035 | Msa0982450:CDS | 40.0% | |
| AGATTATTGCGTGTTTGAGC+TGG | + | chr6_4:22112130-22112149 | Msa0982450:CDS | 40.0% | |
| ! | ATTGTGACTTTTAGCACCAC+CGG | - | chr6_4:22112167-22112186 | None:intergenic | 40.0% |
| TTGTTCCCGATGGTCAAGTA+TGG | + | chr6_4:22110657-22110676 | Msa0982450:CDS | 45.0% | |
| TGGTCAAGTATGGAGAAACG+TGG | + | chr6_4:22110667-22110686 | Msa0982450:CDS | 45.0% | |
| TCAAGTATGGAGAAACGTGG+TGG | + | chr6_4:22110670-22110689 | Msa0982450:CDS | 45.0% | |
| CAAGTATGGAGAAACGTGGT+GGG | + | chr6_4:22110671-22110690 | Msa0982450:CDS | 45.0% | |
| ! | CTTGGCTCTCCATTAGTACT+GGG | - | chr6_4:22110854-22110873 | None:intergenic | 45.0% |
| ATGCCCTAAGCCACTCTTTA+AGG | + | chr6_4:22111342-22111361 | Msa0982450:intron | 45.0% | |
| AGGGACAACAATATGTCAGC+TGG | + | chr6_4:22112107-22112126 | Msa0982450:CDS | 45.0% | |
| TTGTTCCCGATGGTCAAGTA+TGG | + | chr6_4:22110657-22110676 | Msa0982450:CDS | 45.0% | |
| TGGTCAAGTATGGAGAAACG+TGG | + | chr6_4:22110667-22110686 | Msa0982450:CDS | 45.0% | |
| TCAAGTATGGAGAAACGTGG+TGG | + | chr6_4:22110670-22110689 | Msa0982450:CDS | 45.0% | |
| CAAGTATGGAGAAACGTGGT+GGG | + | chr6_4:22110671-22110690 | Msa0982450:CDS | 45.0% | |
| ! | CTTGGCTCTCCATTAGTACT+GGG | - | chr6_4:22110854-22110873 | None:intergenic | 45.0% |
| ATGCCCTAAGCCACTCTTTA+AGG | + | chr6_4:22111342-22111361 | Msa0982450:intron | 45.0% | |
| AGGGACAACAATATGTCAGC+TGG | + | chr6_4:22112107-22112126 | Msa0982450:CDS | 45.0% | |
| !!! | AAAATTTTTAAGTTAATTTA+GGG | - | chr6_4:22110474-22110493 | None:intergenic | 5.0% |
| !!! | AAAATTTTTAAGTTAATTTA+GGG | - | chr6_4:22110474-22110493 | None:intergenic | 5.0% |
| ! | GCTTGGCTCTCCATTAGTAC+TGG | - | chr6_4:22110855-22110874 | None:intergenic | 50.0% |
| GACGGGAAGGATAAGAGTCA+AGG | - | chr6_4:22111727-22111746 | None:intergenic | 50.0% | |
| !! | ATGAGTGTCACTTGACGGGA+AGG | - | chr6_4:22111740-22111759 | None:intergenic | 50.0% |
| TGAGCTGGTCGAGAAGAATC+CGG | + | chr6_4:22112145-22112164 | Msa0982450:CDS | 50.0% | |
| ! | GCTTGGCTCTCCATTAGTAC+TGG | - | chr6_4:22110855-22110874 | None:intergenic | 50.0% |
| GACGGGAAGGATAAGAGTCA+AGG | - | chr6_4:22111727-22111746 | None:intergenic | 50.0% | |
| !! | ATGAGTGTCACTTGACGGGA+AGG | - | chr6_4:22111740-22111759 | None:intergenic | 50.0% |
| TGAGCTGGTCGAGAAGAATC+CGG | + | chr6_4:22112145-22112164 | Msa0982450:CDS | 50.0% | |
| !! | TATGGAGAAACGTGGTGGGC+AGG | + | chr6_4:22110675-22110694 | Msa0982450:CDS | 55.0% |
| !! | TATGGAGAAACGTGGTGGGC+AGG | + | chr6_4:22110675-22110694 | Msa0982450:CDS | 55.0% |
| GCTGGTCGAGAAGAATCCGG+TGG | + | chr6_4:22112148-22112167 | Msa0982450:CDS | 60.0% | |
| GCTGGTCGAGAAGAATCCGG+TGG | + | chr6_4:22112148-22112167 | Msa0982450:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 22110446 | 22112214 | 22110446 | ID=Msa0982450;Name=Msa0982450 |
| chr6_4 | mRNA | 22110446 | 22112214 | 22110446 | ID=Msa0982450-mRNA-1;Parent=Msa0982450;Name=Msa0982450-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.75|0.66|0.5|4|0|212 |
| chr6_4 | exon | 22110446 | 22110451 | 22110446 | ID=Msa0982450-mRNA-1:exon:6966;Parent=Msa0982450-mRNA-1 |
| chr6_4 | exon | 22110544 | 22110696 | 22110544 | ID=Msa0982450-mRNA-1:exon:6967;Parent=Msa0982450-mRNA-1 |
| chr6_4 | exon | 22110746 | 22110967 | 22110746 | ID=Msa0982450-mRNA-1:exon:6968;Parent=Msa0982450-mRNA-1 |
| chr6_4 | exon | 22111957 | 22112214 | 22111957 | ID=Msa0982450-mRNA-1:exon:6969;Parent=Msa0982450-mRNA-1 |
| chr6_4 | CDS | 22110446 | 22110451 | 22110446 | ID=Msa0982450-mRNA-1:cds;Parent=Msa0982450-mRNA-1 |
| chr6_4 | CDS | 22110544 | 22110696 | 22110544 | ID=Msa0982450-mRNA-1:cds;Parent=Msa0982450-mRNA-1 |
| chr6_4 | CDS | 22110746 | 22110967 | 22110746 | ID=Msa0982450-mRNA-1:cds;Parent=Msa0982450-mRNA-1 |
| chr6_4 | CDS | 22111957 | 22112214 | 22111957 | ID=Msa0982450-mRNA-1:cds;Parent=Msa0982450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
