Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984060 | KAF7843566.1 | 71.967 | 239 | 62 | 1 | 71 | 304 | 6 | 244 | 1.79e-103 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984060 | sp|Q9M2B4|ALFL3_ARATH | 61.017 | 236 | 85 | 3 | 72 | 304 | 8 | 239 | 1.84e-86 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984060 | A0A835CHP9 | 71.967 | 239 | 62 | 1 | 71 | 304 | 6 | 244 | 8.55e-104 | 313 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0984060 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984060 | MtrunA17_Chr8g0343441 | 71.967 | 239 | 62 | 2 | 71 | 304 | 6 | 244 | 4.10e-104 | 304 |
| Msa0984060 | MtrunA17_Chr2g0300241 | 59.919 | 247 | 85 | 4 | 65 | 304 | 3 | 242 | 6.05e-88 | 263 |
| Msa0984060 | MtrunA17_Chr2g0329821 | 60.515 | 233 | 88 | 1 | 76 | 304 | 7 | 239 | 1.15e-85 | 257 |
| Msa0984060 | MtrunA17_Chr4g0076771 | 60.944 | 233 | 87 | 2 | 76 | 304 | 12 | 244 | 1.53e-85 | 257 |
| Msa0984060 | MtrunA17_Chr1g0150821 | 60.081 | 248 | 87 | 1 | 69 | 304 | 5 | 252 | 1.72e-85 | 257 |
| Msa0984060 | MtrunA17_Chr4g0006381 | 53.617 | 235 | 91 | 7 | 76 | 304 | 9 | 231 | 4.13e-67 | 209 |
| Msa0984060 | MtrunA17_Chr7g0242511 | 50.638 | 235 | 98 | 6 | 76 | 304 | 9 | 231 | 5.94e-66 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984060 | AT3G42790.1 | 61.017 | 236 | 85 | 3 | 72 | 304 | 8 | 239 | 1.87e-87 | 262 |
| Msa0984060 | AT5G20510.1 | 57.787 | 244 | 92 | 3 | 71 | 304 | 7 | 249 | 1.12e-85 | 258 |
| Msa0984060 | AT1G14510.1 | 61.506 | 239 | 88 | 3 | 69 | 304 | 3 | 240 | 1.01e-83 | 253 |
| Msa0984060 | AT2G02470.1 | 58.025 | 243 | 95 | 3 | 69 | 304 | 3 | 245 | 3.50e-78 | 239 |
| Msa0984060 | AT2G02470.2 | 58.025 | 243 | 86 | 4 | 69 | 304 | 3 | 236 | 2.28e-76 | 234 |
| Msa0984060 | AT5G26210.1 | 60.581 | 241 | 90 | 1 | 69 | 304 | 4 | 244 | 5.30e-74 | 228 |
| Msa0984060 | AT5G05610.2 | 52.155 | 232 | 103 | 2 | 73 | 304 | 7 | 230 | 7.83e-73 | 224 |
| Msa0984060 | AT5G05610.1 | 52.155 | 232 | 103 | 2 | 73 | 304 | 7 | 230 | 7.83e-73 | 224 |
| Msa0984060 | AT3G11200.1 | 51.653 | 242 | 108 | 4 | 65 | 304 | 1 | 235 | 1.07e-67 | 211 |
| Msa0984060 | AT5G20510.2 | 55.340 | 206 | 81 | 3 | 109 | 304 | 4 | 208 | 5.29e-64 | 201 |
| Msa0984060 | AT5G20510.3 | 61.446 | 166 | 59 | 1 | 71 | 231 | 7 | 172 | 4.23e-62 | 195 |
| Msa0984060 | AT3G11200.2 | 52.525 | 198 | 85 | 4 | 109 | 304 | 32 | 222 | 6.34e-55 | 178 |
| Msa0984060 | AT2G02470.3 | 66.667 | 147 | 47 | 1 | 76 | 220 | 11 | 157 | 1.91e-54 | 178 |
Find 78 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAGTCAATTTACCTTCTA+AGG | 0.242496 | 6_4:+27752304 | Msa0984060:CDS |
| TTGCCATGGCACACTACTTT+GGG | 0.283032 | 6_4:+27752438 | Msa0984060:CDS |
| ACTTGGATTTGCTGCCATTA+TGG | 0.283479 | 6_4:-27752574 | None:intergenic |
| AGCATAGGCTCGGGAAGATC+TGG | 0.294522 | 6_4:-27752335 | None:intergenic |
| CTTCACAGCGAATCAATGTT+AGG | 0.296552 | 6_4:+27751852 | Msa0984060:CDS |
| TCAATATTTGAAGTTGTTAC+TGG | 0.298160 | 6_4:+27752524 | Msa0984060:CDS |
| AGCCACAGACTCTCCTTCTC+TGG | 0.311063 | 6_4:-27752257 | None:intergenic |
| GTATCAATCTCCTCATCTTT+AGG | 0.339662 | 6_4:-27752659 | None:intergenic |
| CAGAAAATCCAGAATTCATC+AGG | 0.361091 | 6_4:-27753118 | None:intergenic |
| AGATCTTCCCGAGCCTATGC+TGG | 0.365711 | 6_4:+27752337 | Msa0984060:CDS |
| CTGCACTTTCGAGTTGCACT+TGG | 0.379695 | 6_4:-27752591 | None:intergenic |
| GGTTAAGCAGACTAAGGCTT+TGG | 0.397675 | 6_4:+27752631 | Msa0984060:CDS |
| TGCTGGGATTTAACTTTGAA+AGG | 0.416022 | 6_4:+27752354 | Msa0984060:CDS |
| ATTGCCATGGCACACTACTT+TGG | 0.419300 | 6_4:+27752437 | Msa0984060:CDS |
| CGAGTAGCTTCAAGCCATAA+TGG | 0.426598 | 6_4:+27752560 | Msa0984060:CDS |
| AATATGACCCTGATGAATTC+TGG | 0.431299 | 6_4:+27753110 | Msa0984060:CDS |
| TCTCCTTCTCTGGGTCAGAT+TGG | 0.447533 | 6_4:-27752247 | None:intergenic |
| TTCACAGCGAATCAATGTTA+GGG | 0.452573 | 6_4:+27751853 | Msa0984060:CDS |
| TCGATATGCTTAGCCCTAGC+AGG | 0.457819 | 6_4:-27753187 | None:intergenic |
| GCATAGGCTCGGGAAGATCT+GGG | 0.458847 | 6_4:-27752334 | None:intergenic |
| TTGACTTCCCACTGCTCACT+AGG | 0.465024 | 6_4:-27752290 | None:intergenic |
| ATTCGCTGTGAAGGAAAAGA+AGG | 0.468130 | 6_4:-27751842 | None:intergenic |
| AAAGTGCCGACAAGAAATAA+AGG | 0.470381 | 6_4:+27752037 | Msa0984060:intron |
| ATCGCATGCAAGAGAAAGAT+TGG | 0.476387 | 6_4:+27752378 | Msa0984060:CDS |
| GCTGGGATTTAACTTTGAAA+GGG | 0.477875 | 6_4:+27752355 | Msa0984060:CDS |
| ATCACTATGAACAGCAACTA+AGG | 0.486624 | 6_4:-27752405 | None:intergenic |
| GATTTCAATGGTCGTCGCGC+TGG | 0.486877 | 6_4:+27752182 | Msa0984060:CDS |
| TCCTGGCAAAACTTGTCAGC+AGG | 0.489793 | 6_4:+27751919 | Msa0984060:CDS |
| CACAGTATGGCTCACATCCC+TGG | 0.491734 | 6_4:-27752685 | None:intergenic |
| GTGTGAATATCACCCCTGCT+AGG | 0.500091 | 6_4:+27753173 | Msa0984060:CDS |
| ATCTCAGGTTAAGCAGACTA+AGG | 0.501344 | 6_4:+27752625 | Msa0984060:CDS |
| GCAGCGGGCTATGAAATCTC+AGG | 0.511013 | 6_4:+27752610 | Msa0984060:CDS |
| AAGGAAAGTCTTGTTTCTTG+AGG | 0.511017 | 6_4:+27752090 | Msa0984060:CDS |
| CACTACTTTGGGGCAAGATG+TGG | 0.517023 | 6_4:+27752449 | Msa0984060:CDS |
| GTTAAATCCCAGCATAGGCT+CGG | 0.523411 | 6_4:-27752345 | None:intergenic |
| GAGGTAGATGAAGATGAAGA+CGG | 0.534971 | 6_4:+27753058 | Msa0984060:intron |
| ACTGTATGCCGTTGTTTGAG+AGG | 0.538437 | 6_4:-27752127 | None:intergenic |
| GTGCAACTCGAAAGTGCAGC+GGG | 0.541434 | 6_4:+27752595 | Msa0984060:CDS |
| TTTGTGAGAGGTGGTTCCAT+GGG | 0.547613 | 6_4:+27753146 | Msa0984060:CDS |
| TATCATTTATCATATCGAAA+AGG | 0.550402 | 6_4:-27752496 | None:intergenic |
| AAATCCCGTGGAATTCGAGT+TGG | 0.554000 | 6_4:+27751881 | Msa0984060:CDS |
| GCCACAGACTCTCCTTCTCT+GGG | 0.561677 | 6_4:-27752256 | None:intergenic |
| TCAAAGTTAAATCCCAGCAT+AGG | 0.563679 | 6_4:-27752350 | None:intergenic |
| GATCTTCCCGAGCCTATGCT+GGG | 0.565149 | 6_4:+27752338 | Msa0984060:CDS |
| TTAAATCCCAGCATAGGCTC+GGG | 0.565590 | 6_4:-27752344 | None:intergenic |
| TGACTTCCCACTGCTCACTA+GGG | 0.565869 | 6_4:-27752289 | None:intergenic |
| TGAGGAGATTGATACGGACC+AGG | 0.567490 | 6_4:+27752667 | Msa0984060:CDS |
| TGTGAATATCACCCCTGCTA+GGG | 0.567860 | 6_4:+27753174 | Msa0984060:CDS |
| ATCTCTGAAAACTTCTTCGA+CGG | 0.569114 | 6_4:-27752162 | None:intergenic |
| CAGTTTCCCTAGTGAGCAGT+GGG | 0.569838 | 6_4:+27752283 | Msa0984060:CDS |
| CTAACATTGATTCGCTGTGA+AGG | 0.570338 | 6_4:-27751851 | None:intergenic |
| TCTGTGATATTTGTGAGAGG+TGG | 0.570412 | 6_4:+27753137 | Msa0984060:CDS |
| GTAACAACTTCAAATATTGA+CGG | 0.577921 | 6_4:-27752521 | None:intergenic |
| TGATATTCACACATTTCCCA+TGG | 0.578749 | 6_4:-27753162 | None:intergenic |
| CGATATGCTTAGCCCTAGCA+GGG | 0.578888 | 6_4:-27753186 | None:intergenic |
| CATAGGCTCGGGAAGATCTG+GGG | 0.581002 | 6_4:-27752333 | None:intergenic |
| ATTTGTGAGAGGTGGTTCCA+TGG | 0.592358 | 6_4:+27753145 | Msa0984060:CDS |
| CGAAAATGCCTCTCAAACAA+CGG | 0.596105 | 6_4:+27752119 | Msa0984060:CDS |
| TAAAGATGAGGAGATTGATA+CGG | 0.597767 | 6_4:+27752661 | Msa0984060:CDS |
| TGCCATGGCACACTACTTTG+GGG | 0.603166 | 6_4:+27752439 | Msa0984060:CDS |
| TTGCTGTTCATAGTGATGCA+TGG | 0.606640 | 6_4:+27752411 | Msa0984060:CDS |
| ATAGGCTCGGGAAGATCTGG+GGG | 0.607426 | 6_4:-27752332 | None:intergenic |
| TCACAGCGAATCAATGTTAG+GGG | 0.615098 | 6_4:+27751854 | Msa0984060:CDS |
| GTGGATTTGACAAATCTGAC+AGG | 0.615955 | 6_4:+27752468 | Msa0984060:CDS |
| TGCCCCAAAGTAGTGTGCCA+TGG | 0.618279 | 6_4:-27752441 | None:intergenic |
| TAACCAATCTGACCCAGAGA+AGG | 0.618594 | 6_4:+27752244 | Msa0984060:CDS |
| TTTGGAGTTACCTAAAGATG+AGG | 0.618663 | 6_4:+27752649 | Msa0984060:CDS |
| TGATGCATGGTTAATTGCCA+TGG | 0.631616 | 6_4:+27752424 | Msa0984060:CDS |
| ACCCAGAGAAGGAGAGTCTG+TGG | 0.633591 | 6_4:+27752255 | Msa0984060:CDS |
| ATAGAACTCTTCAACATCAG+TGG | 0.635056 | 6_4:-27752222 | None:intergenic |
| ACAGTTTCCCTAGTGAGCAG+TGG | 0.642804 | 6_4:+27752282 | Msa0984060:CDS |
| GAGGAGATTGATACGGACCA+GGG | 0.649556 | 6_4:+27752668 | Msa0984060:CDS |
| AGTGCAACTCGAAAGTGCAG+CGG | 0.657737 | 6_4:+27752594 | Msa0984060:CDS |
| GTTAGGGGAAAGAAATCCCG+TGG | 0.660372 | 6_4:+27751869 | Msa0984060:CDS |
| AGAAAATCCAGAATTCATCA+GGG | 0.682411 | 6_4:-27753117 | None:intergenic |
| GAAGACGGAGAGAACTCATG+TGG | 0.691398 | 6_4:+27753073 | Msa0984060:CDS |
| GAGAACTCATGTGGTGCATG+CGG | 0.697071 | 6_4:+27753082 | Msa0984060:CDS |
| GATATGCTTAGCCCTAGCAG+GGG | 0.740274 | 6_4:-27753185 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGACATAAAACATTAAA+TGG | - | chr6_4:27752768-27752787 | None:intergenic | 15.0% |
| !! | AAATGACATAAAACATTAAA+TGG | - | chr6_4:27752768-27752787 | None:intergenic | 15.0% |
| !! | TATCATTTATCATATCGAAA+AGG | - | chr6_4:27752499-27752518 | None:intergenic | 20.0% |
| !! | AATAATATTCCTTATGTCAT+TGG | - | chr6_4:27752895-27752914 | None:intergenic | 20.0% |
| !! | ATGACATAAGGAATATTATT+AGG | + | chr6_4:27752895-27752914 | Msa0984060:intron | 20.0% |
| !! | TATCATTTATCATATCGAAA+AGG | - | chr6_4:27752499-27752518 | None:intergenic | 20.0% |
| !! | AATAATATTCCTTATGTCAT+TGG | - | chr6_4:27752895-27752914 | None:intergenic | 20.0% |
| !! | ATGACATAAGGAATATTATT+AGG | + | chr6_4:27752895-27752914 | Msa0984060:intron | 20.0% |
| !! | CAAAAACCTTTATTTCTTGT+CGG | - | chr6_4:27752046-27752065 | None:intergenic | 25.0% |
| ! | ACAAGCAAAAATCTAAGAAA+AGG | + | chr6_4:27752071-27752090 | Msa0984060:CDS | 25.0% |
| ! | GTAACAACTTCAAATATTGA+CGG | - | chr6_4:27752524-27752543 | None:intergenic | 25.0% |
| !! | TCAATATTTGAAGTTGTTAC+TGG | + | chr6_4:27752524-27752543 | Msa0984060:CDS | 25.0% |
| ! | CTTCTTTGATAAAATTCTCA+AGG | - | chr6_4:27752944-27752963 | None:intergenic | 25.0% |
| ! | AATTTATGTTATAGGACAGA+AGG | - | chr6_4:27753002-27753021 | None:intergenic | 25.0% |
| !! | CAAAAACCTTTATTTCTTGT+CGG | - | chr6_4:27752046-27752065 | None:intergenic | 25.0% |
| ! | ACAAGCAAAAATCTAAGAAA+AGG | + | chr6_4:27752071-27752090 | Msa0984060:CDS | 25.0% |
| ! | GTAACAACTTCAAATATTGA+CGG | - | chr6_4:27752524-27752543 | None:intergenic | 25.0% |
| !! | TCAATATTTGAAGTTGTTAC+TGG | + | chr6_4:27752524-27752543 | Msa0984060:CDS | 25.0% |
| ! | CTTCTTTGATAAAATTCTCA+AGG | - | chr6_4:27752944-27752963 | None:intergenic | 25.0% |
| ! | AATTTATGTTATAGGACAGA+AGG | - | chr6_4:27753002-27753021 | None:intergenic | 25.0% |
| TAAAATACGTGCAATAGAGT+AGG | - | chr6_4:27751959-27751978 | None:intergenic | 30.0% | |
| ! | GAAGTTTTCAGAGATTTCAA+TGG | + | chr6_4:27752170-27752189 | Msa0984060:CDS | 30.0% |
| TAAAGATGAGGAGATTGATA+CGG | + | chr6_4:27752661-27752680 | Msa0984060:CDS | 30.0% | |
| ATAAAGTCCTTGAACTTCTT+AGG | - | chr6_4:27752743-27752762 | None:intergenic | 30.0% | |
| TGATGACTAATATGTCTGTT+AGG | + | chr6_4:27752844-27752863 | Msa0984060:intron | 30.0% | |
| AGAAATTGAGAGAGAGAAAA+GGG | - | chr6_4:27752972-27752991 | None:intergenic | 30.0% | |
| AAGAAATTGAGAGAGAGAAA+AGG | - | chr6_4:27752973-27752992 | None:intergenic | 30.0% | |
| GTGTGGTGAATTTATGTTAT+AGG | - | chr6_4:27753010-27753029 | None:intergenic | 30.0% | |
| AGAAAATCCAGAATTCATCA+GGG | - | chr6_4:27753120-27753139 | None:intergenic | 30.0% | |
| ! | TTTTCTGTGATATTTGTGAG+AGG | + | chr6_4:27753134-27753153 | Msa0984060:CDS | 30.0% |
| TAAAATACGTGCAATAGAGT+AGG | - | chr6_4:27751959-27751978 | None:intergenic | 30.0% | |
| ! | GAAGTTTTCAGAGATTTCAA+TGG | + | chr6_4:27752170-27752189 | Msa0984060:CDS | 30.0% |
| TAAAGATGAGGAGATTGATA+CGG | + | chr6_4:27752661-27752680 | Msa0984060:CDS | 30.0% | |
| ATAAAGTCCTTGAACTTCTT+AGG | - | chr6_4:27752743-27752762 | None:intergenic | 30.0% | |
| TGATGACTAATATGTCTGTT+AGG | + | chr6_4:27752844-27752863 | Msa0984060:intron | 30.0% | |
| AGAAATTGAGAGAGAGAAAA+GGG | - | chr6_4:27752972-27752991 | None:intergenic | 30.0% | |
| AAGAAATTGAGAGAGAGAAA+AGG | - | chr6_4:27752973-27752992 | None:intergenic | 30.0% | |
| GTGTGGTGAATTTATGTTAT+AGG | - | chr6_4:27753010-27753029 | None:intergenic | 30.0% | |
| AGAAAATCCAGAATTCATCA+GGG | - | chr6_4:27753120-27753139 | None:intergenic | 30.0% | |
| ! | TTTTCTGTGATATTTGTGAG+AGG | + | chr6_4:27753134-27753153 | Msa0984060:CDS | 30.0% |
| TTCACAGCGAATCAATGTTA+GGG | + | chr6_4:27751853-27751872 | Msa0984060:CDS | 35.0% | |
| ! | TTTTTCCAACTCGAATTCCA+CGG | - | chr6_4:27751889-27751908 | None:intergenic | 35.0% |
| !! | AAAGTGCCGACAAGAAATAA+AGG | + | chr6_4:27752037-27752056 | Msa0984060:intron | 35.0% |
| !! | AAGGAAAGTCTTGTTTCTTG+AGG | + | chr6_4:27752090-27752109 | Msa0984060:CDS | 35.0% |
| ! | ATCTCTGAAAACTTCTTCGA+CGG | - | chr6_4:27752165-27752184 | None:intergenic | 35.0% |
| ATAGAACTCTTCAACATCAG+TGG | - | chr6_4:27752225-27752244 | None:intergenic | 35.0% | |
| GGAAGTCAATTTACCTTCTA+AGG | + | chr6_4:27752304-27752323 | Msa0984060:CDS | 35.0% | |
| TCAAAGTTAAATCCCAGCAT+AGG | - | chr6_4:27752353-27752372 | None:intergenic | 35.0% | |
| ! | TGCTGGGATTTAACTTTGAA+AGG | + | chr6_4:27752354-27752373 | Msa0984060:CDS | 35.0% |
| ! | GCTGGGATTTAACTTTGAAA+GGG | + | chr6_4:27752355-27752374 | Msa0984060:CDS | 35.0% |
| ATCACTATGAACAGCAACTA+AGG | - | chr6_4:27752408-27752427 | None:intergenic | 35.0% | |
| ! | TTTGGAGTTACCTAAAGATG+AGG | + | chr6_4:27752649-27752668 | Msa0984060:CDS | 35.0% |
| GTATCAATCTCCTCATCTTT+AGG | - | chr6_4:27752662-27752681 | None:intergenic | 35.0% | |
| CTAATATGTCTGTTAGGAGT+TGG | + | chr6_4:27752850-27752869 | Msa0984060:intron | 35.0% | |
| GAGATCAATCCAATGACATA+AGG | + | chr6_4:27752883-27752902 | Msa0984060:intron | 35.0% | |
| CTCTCTCTCAATTTCTTATG+AGG | + | chr6_4:27752976-27752995 | Msa0984060:intron | 35.0% | |
| AAAGTTCTTCCATCTCTGAT+GGG | - | chr6_4:27753036-27753055 | None:intergenic | 35.0% | |
| AAAAGTTCTTCCATCTCTGA+TGG | - | chr6_4:27753037-27753056 | None:intergenic | 35.0% | |
| ! | AGAGATGGAAGAACTTTTTG+AGG | + | chr6_4:27753039-27753058 | Msa0984060:intron | 35.0% |
| AATATGACCCTGATGAATTC+TGG | + | chr6_4:27753110-27753129 | Msa0984060:CDS | 35.0% | |
| CAGAAAATCCAGAATTCATC+AGG | - | chr6_4:27753121-27753140 | None:intergenic | 35.0% | |
| TGATATTCACACATTTCCCA+TGG | - | chr6_4:27753165-27753184 | None:intergenic | 35.0% | |
| TTCACAGCGAATCAATGTTA+GGG | + | chr6_4:27751853-27751872 | Msa0984060:CDS | 35.0% | |
| ! | TTTTTCCAACTCGAATTCCA+CGG | - | chr6_4:27751889-27751908 | None:intergenic | 35.0% |
| !! | AAAGTGCCGACAAGAAATAA+AGG | + | chr6_4:27752037-27752056 | Msa0984060:intron | 35.0% |
| !! | AAGGAAAGTCTTGTTTCTTG+AGG | + | chr6_4:27752090-27752109 | Msa0984060:CDS | 35.0% |
| ! | ATCTCTGAAAACTTCTTCGA+CGG | - | chr6_4:27752165-27752184 | None:intergenic | 35.0% |
| ATAGAACTCTTCAACATCAG+TGG | - | chr6_4:27752225-27752244 | None:intergenic | 35.0% | |
| GGAAGTCAATTTACCTTCTA+AGG | + | chr6_4:27752304-27752323 | Msa0984060:CDS | 35.0% | |
| TCAAAGTTAAATCCCAGCAT+AGG | - | chr6_4:27752353-27752372 | None:intergenic | 35.0% | |
| ! | TGCTGGGATTTAACTTTGAA+AGG | + | chr6_4:27752354-27752373 | Msa0984060:CDS | 35.0% |
| ! | GCTGGGATTTAACTTTGAAA+GGG | + | chr6_4:27752355-27752374 | Msa0984060:CDS | 35.0% |
| ATCACTATGAACAGCAACTA+AGG | - | chr6_4:27752408-27752427 | None:intergenic | 35.0% | |
| ! | TTTGGAGTTACCTAAAGATG+AGG | + | chr6_4:27752649-27752668 | Msa0984060:CDS | 35.0% |
| GTATCAATCTCCTCATCTTT+AGG | - | chr6_4:27752662-27752681 | None:intergenic | 35.0% | |
| CTAATATGTCTGTTAGGAGT+TGG | + | chr6_4:27752850-27752869 | Msa0984060:intron | 35.0% | |
| GAGATCAATCCAATGACATA+AGG | + | chr6_4:27752883-27752902 | Msa0984060:intron | 35.0% | |
| CTCTCTCTCAATTTCTTATG+AGG | + | chr6_4:27752976-27752995 | Msa0984060:intron | 35.0% | |
| AAAGTTCTTCCATCTCTGAT+GGG | - | chr6_4:27753036-27753055 | None:intergenic | 35.0% | |
| AAAAGTTCTTCCATCTCTGA+TGG | - | chr6_4:27753037-27753056 | None:intergenic | 35.0% | |
| ! | AGAGATGGAAGAACTTTTTG+AGG | + | chr6_4:27753039-27753058 | Msa0984060:intron | 35.0% |
| AATATGACCCTGATGAATTC+TGG | + | chr6_4:27753110-27753129 | Msa0984060:CDS | 35.0% | |
| CAGAAAATCCAGAATTCATC+AGG | - | chr6_4:27753121-27753140 | None:intergenic | 35.0% | |
| TGATATTCACACATTTCCCA+TGG | - | chr6_4:27753165-27753184 | None:intergenic | 35.0% | |
| ATTCGCTGTGAAGGAAAAGA+AGG | - | chr6_4:27751845-27751864 | None:intergenic | 40.0% | |
| !! | CTAACATTGATTCGCTGTGA+AGG | - | chr6_4:27751854-27751873 | None:intergenic | 40.0% |
| CTTCACAGCGAATCAATGTT+AGG | + | chr6_4:27751852-27751871 | Msa0984060:CDS | 40.0% | |
| TCACAGCGAATCAATGTTAG+GGG | + | chr6_4:27751854-27751873 | Msa0984060:CDS | 40.0% | |
| ! | TTTTCCAACTCGAATTCCAC+GGG | - | chr6_4:27751888-27751907 | None:intergenic | 40.0% |
| GGAAAAAAAACACGTGTTCC+TGG | + | chr6_4:27751902-27751921 | Msa0984060:CDS | 40.0% | |
| !!! | CGTTGTTTGAGAGGCATTTT+CGG | - | chr6_4:27752121-27752140 | None:intergenic | 40.0% |
| CGAAAATGCCTCTCAAACAA+CGG | + | chr6_4:27752119-27752138 | Msa0984060:CDS | 40.0% | |
| ATCGCATGCAAGAGAAAGAT+TGG | + | chr6_4:27752378-27752397 | Msa0984060:CDS | 40.0% | |
| ! | TTGCTGTTCATAGTGATGCA+TGG | + | chr6_4:27752411-27752430 | Msa0984060:CDS | 40.0% |
| TGATGCATGGTTAATTGCCA+TGG | + | chr6_4:27752424-27752443 | Msa0984060:CDS | 40.0% | |
| GTGGATTTGACAAATCTGAC+AGG | + | chr6_4:27752468-27752487 | Msa0984060:CDS | 40.0% | |
| !! | ACTTGGATTTGCTGCCATTA+TGG | - | chr6_4:27752577-27752596 | None:intergenic | 40.0% |
| ATCTCAGGTTAAGCAGACTA+AGG | + | chr6_4:27752625-27752644 | Msa0984060:CDS | 40.0% | |
| CATGAAGCCTAAGAAGTTCA+AGG | + | chr6_4:27752733-27752752 | Msa0984060:intron | 40.0% | |
| TCTGTTAGGAGTTGGAAGAA+AGG | + | chr6_4:27752858-27752877 | Msa0984060:intron | 40.0% | |
| GAGGTAGATGAAGATGAAGA+CGG | + | chr6_4:27753058-27753077 | Msa0984060:intron | 40.0% | |
| TCTGTGATATTTGTGAGAGG+TGG | + | chr6_4:27753137-27753156 | Msa0984060:CDS | 40.0% | |
| ATTCGCTGTGAAGGAAAAGA+AGG | - | chr6_4:27751845-27751864 | None:intergenic | 40.0% | |
| !! | CTAACATTGATTCGCTGTGA+AGG | - | chr6_4:27751854-27751873 | None:intergenic | 40.0% |
| CTTCACAGCGAATCAATGTT+AGG | + | chr6_4:27751852-27751871 | Msa0984060:CDS | 40.0% | |
| TCACAGCGAATCAATGTTAG+GGG | + | chr6_4:27751854-27751873 | Msa0984060:CDS | 40.0% | |
| ! | TTTTCCAACTCGAATTCCAC+GGG | - | chr6_4:27751888-27751907 | None:intergenic | 40.0% |
| GGAAAAAAAACACGTGTTCC+TGG | + | chr6_4:27751902-27751921 | Msa0984060:CDS | 40.0% | |
| !!! | CGTTGTTTGAGAGGCATTTT+CGG | - | chr6_4:27752121-27752140 | None:intergenic | 40.0% |
| CGAAAATGCCTCTCAAACAA+CGG | + | chr6_4:27752119-27752138 | Msa0984060:CDS | 40.0% | |
| ATCGCATGCAAGAGAAAGAT+TGG | + | chr6_4:27752378-27752397 | Msa0984060:CDS | 40.0% | |
| ! | TTGCTGTTCATAGTGATGCA+TGG | + | chr6_4:27752411-27752430 | Msa0984060:CDS | 40.0% |
| TGATGCATGGTTAATTGCCA+TGG | + | chr6_4:27752424-27752443 | Msa0984060:CDS | 40.0% | |
| GTGGATTTGACAAATCTGAC+AGG | + | chr6_4:27752468-27752487 | Msa0984060:CDS | 40.0% | |
| !! | ACTTGGATTTGCTGCCATTA+TGG | - | chr6_4:27752577-27752596 | None:intergenic | 40.0% |
| ATCTCAGGTTAAGCAGACTA+AGG | + | chr6_4:27752625-27752644 | Msa0984060:CDS | 40.0% | |
| CATGAAGCCTAAGAAGTTCA+AGG | + | chr6_4:27752733-27752752 | Msa0984060:intron | 40.0% | |
| TCTGTTAGGAGTTGGAAGAA+AGG | + | chr6_4:27752858-27752877 | Msa0984060:intron | 40.0% | |
| GAGGTAGATGAAGATGAAGA+CGG | + | chr6_4:27753058-27753077 | Msa0984060:intron | 40.0% | |
| TCTGTGATATTTGTGAGAGG+TGG | + | chr6_4:27753137-27753156 | Msa0984060:CDS | 40.0% | |
| AAATCCCGTGGAATTCGAGT+TGG | + | chr6_4:27751881-27751900 | Msa0984060:CDS | 45.0% | |
| ACTGTATGCCGTTGTTTGAG+AGG | - | chr6_4:27752130-27752149 | None:intergenic | 45.0% | |
| TAACCAATCTGACCCAGAGA+AGG | + | chr6_4:27752244-27752263 | Msa0984060:CDS | 45.0% | |
| TTAAATCCCAGCATAGGCTC+GGG | - | chr6_4:27752347-27752366 | None:intergenic | 45.0% | |
| GTTAAATCCCAGCATAGGCT+CGG | - | chr6_4:27752348-27752367 | None:intergenic | 45.0% | |
| ATTGCCATGGCACACTACTT+TGG | + | chr6_4:27752437-27752456 | Msa0984060:CDS | 45.0% | |
| TTGCCATGGCACACTACTTT+GGG | + | chr6_4:27752438-27752457 | Msa0984060:CDS | 45.0% | |
| CGAGTAGCTTCAAGCCATAA+TGG | + | chr6_4:27752560-27752579 | Msa0984060:CDS | 45.0% | |
| GGTTAAGCAGACTAAGGCTT+TGG | + | chr6_4:27752631-27752650 | Msa0984060:CDS | 45.0% | |
| AGCCATACTGTGTGCTGAAA+AGG | + | chr6_4:27752696-27752715 | Msa0984060:intron | 45.0% | |
| GGCTTCATGATGTCTCTCTT+GGG | - | chr6_4:27752722-27752741 | None:intergenic | 45.0% | |
| AGGCTTCATGATGTCTCTCT+TGG | - | chr6_4:27752723-27752742 | None:intergenic | 45.0% | |
| ATTTGTGAGAGGTGGTTCCA+TGG | + | chr6_4:27753145-27753164 | Msa0984060:CDS | 45.0% | |
| TTTGTGAGAGGTGGTTCCAT+GGG | + | chr6_4:27753146-27753165 | Msa0984060:CDS | 45.0% | |
| TGTGAATATCACCCCTGCTA+GGG | + | chr6_4:27753174-27753193 | Msa0984060:CDS | 45.0% | |
| AAATCCCGTGGAATTCGAGT+TGG | + | chr6_4:27751881-27751900 | Msa0984060:CDS | 45.0% | |
| ACTGTATGCCGTTGTTTGAG+AGG | - | chr6_4:27752130-27752149 | None:intergenic | 45.0% | |
| TAACCAATCTGACCCAGAGA+AGG | + | chr6_4:27752244-27752263 | Msa0984060:CDS | 45.0% | |
| TTAAATCCCAGCATAGGCTC+GGG | - | chr6_4:27752347-27752366 | None:intergenic | 45.0% | |
| GTTAAATCCCAGCATAGGCT+CGG | - | chr6_4:27752348-27752367 | None:intergenic | 45.0% | |
| ATTGCCATGGCACACTACTT+TGG | + | chr6_4:27752437-27752456 | Msa0984060:CDS | 45.0% | |
| TTGCCATGGCACACTACTTT+GGG | + | chr6_4:27752438-27752457 | Msa0984060:CDS | 45.0% | |
| CGAGTAGCTTCAAGCCATAA+TGG | + | chr6_4:27752560-27752579 | Msa0984060:CDS | 45.0% | |
| GGTTAAGCAGACTAAGGCTT+TGG | + | chr6_4:27752631-27752650 | Msa0984060:CDS | 45.0% | |
| AGCCATACTGTGTGCTGAAA+AGG | + | chr6_4:27752696-27752715 | Msa0984060:intron | 45.0% | |
| GGCTTCATGATGTCTCTCTT+GGG | - | chr6_4:27752722-27752741 | None:intergenic | 45.0% | |
| AGGCTTCATGATGTCTCTCT+TGG | - | chr6_4:27752723-27752742 | None:intergenic | 45.0% | |
| ATTTGTGAGAGGTGGTTCCA+TGG | + | chr6_4:27753145-27753164 | Msa0984060:CDS | 45.0% | |
| TTTGTGAGAGGTGGTTCCAT+GGG | + | chr6_4:27753146-27753165 | Msa0984060:CDS | 45.0% | |
| TGTGAATATCACCCCTGCTA+GGG | + | chr6_4:27753174-27753193 | Msa0984060:CDS | 45.0% | |
| GTTAGGGGAAAGAAATCCCG+TGG | + | chr6_4:27751869-27751888 | Msa0984060:CDS | 50.0% | |
| TCCTGGCAAAACTTGTCAGC+AGG | + | chr6_4:27751919-27751938 | Msa0984060:CDS | 50.0% | |
| ! | ACCTGCTGACAAGTTTTGCC+AGG | - | chr6_4:27751923-27751942 | None:intergenic | 50.0% |
| TCTCCTTCTCTGGGTCAGAT+TGG | - | chr6_4:27752250-27752269 | None:intergenic | 50.0% | |
| ACAGTTTCCCTAGTGAGCAG+TGG | + | chr6_4:27752282-27752301 | Msa0984060:CDS | 50.0% | |
| CAGTTTCCCTAGTGAGCAGT+GGG | + | chr6_4:27752283-27752302 | Msa0984060:CDS | 50.0% | |
| TGACTTCCCACTGCTCACTA+GGG | - | chr6_4:27752292-27752311 | None:intergenic | 50.0% | |
| TTGACTTCCCACTGCTCACT+AGG | - | chr6_4:27752293-27752312 | None:intergenic | 50.0% | |
| TCTGGGGGAACTTCCTTAGA+AGG | - | chr6_4:27752320-27752339 | None:intergenic | 50.0% | |
| TGCCATGGCACACTACTTTG+GGG | + | chr6_4:27752439-27752458 | Msa0984060:CDS | 50.0% | |
| !! | CACTACTTTGGGGCAAGATG+TGG | + | chr6_4:27752449-27752468 | Msa0984060:CDS | 50.0% |
| !! | CTGCACTTTCGAGTTGCACT+TGG | - | chr6_4:27752594-27752613 | None:intergenic | 50.0% |
| ! | AGTGCAACTCGAAAGTGCAG+CGG | + | chr6_4:27752594-27752613 | Msa0984060:CDS | 50.0% |
| TGAGGAGATTGATACGGACC+AGG | + | chr6_4:27752667-27752686 | Msa0984060:CDS | 50.0% | |
| GAGGAGATTGATACGGACCA+GGG | + | chr6_4:27752668-27752687 | Msa0984060:CDS | 50.0% | |
| ! | GGCCTTTTCAGCACACAGTA+TGG | - | chr6_4:27752701-27752720 | None:intergenic | 50.0% |
| GAAGACGGAGAGAACTCATG+TGG | + | chr6_4:27753073-27753092 | Msa0984060:CDS | 50.0% | |
| GAGAACTCATGTGGTGCATG+CGG | + | chr6_4:27753082-27753101 | Msa0984060:CDS | 50.0% | |
| GTGTGAATATCACCCCTGCT+AGG | + | chr6_4:27753173-27753192 | Msa0984060:CDS | 50.0% | |
| GATATGCTTAGCCCTAGCAG+GGG | - | chr6_4:27753188-27753207 | None:intergenic | 50.0% | |
| CGATATGCTTAGCCCTAGCA+GGG | - | chr6_4:27753189-27753208 | None:intergenic | 50.0% | |
| TCGATATGCTTAGCCCTAGC+AGG | - | chr6_4:27753190-27753209 | None:intergenic | 50.0% | |
| GTTAGGGGAAAGAAATCCCG+TGG | + | chr6_4:27751869-27751888 | Msa0984060:CDS | 50.0% | |
| TCCTGGCAAAACTTGTCAGC+AGG | + | chr6_4:27751919-27751938 | Msa0984060:CDS | 50.0% | |
| ! | ACCTGCTGACAAGTTTTGCC+AGG | - | chr6_4:27751923-27751942 | None:intergenic | 50.0% |
| TCTCCTTCTCTGGGTCAGAT+TGG | - | chr6_4:27752250-27752269 | None:intergenic | 50.0% | |
| ACAGTTTCCCTAGTGAGCAG+TGG | + | chr6_4:27752282-27752301 | Msa0984060:CDS | 50.0% | |
| CAGTTTCCCTAGTGAGCAGT+GGG | + | chr6_4:27752283-27752302 | Msa0984060:CDS | 50.0% | |
| TGACTTCCCACTGCTCACTA+GGG | - | chr6_4:27752292-27752311 | None:intergenic | 50.0% | |
| TTGACTTCCCACTGCTCACT+AGG | - | chr6_4:27752293-27752312 | None:intergenic | 50.0% | |
| TCTGGGGGAACTTCCTTAGA+AGG | - | chr6_4:27752320-27752339 | None:intergenic | 50.0% | |
| TGCCATGGCACACTACTTTG+GGG | + | chr6_4:27752439-27752458 | Msa0984060:CDS | 50.0% | |
| !! | CACTACTTTGGGGCAAGATG+TGG | + | chr6_4:27752449-27752468 | Msa0984060:CDS | 50.0% |
| !! | CTGCACTTTCGAGTTGCACT+TGG | - | chr6_4:27752594-27752613 | None:intergenic | 50.0% |
| ! | AGTGCAACTCGAAAGTGCAG+CGG | + | chr6_4:27752594-27752613 | Msa0984060:CDS | 50.0% |
| TGAGGAGATTGATACGGACC+AGG | + | chr6_4:27752667-27752686 | Msa0984060:CDS | 50.0% | |
| GAGGAGATTGATACGGACCA+GGG | + | chr6_4:27752668-27752687 | Msa0984060:CDS | 50.0% | |
| ! | GGCCTTTTCAGCACACAGTA+TGG | - | chr6_4:27752701-27752720 | None:intergenic | 50.0% |
| GAAGACGGAGAGAACTCATG+TGG | + | chr6_4:27753073-27753092 | Msa0984060:CDS | 50.0% | |
| GAGAACTCATGTGGTGCATG+CGG | + | chr6_4:27753082-27753101 | Msa0984060:CDS | 50.0% | |
| GTGTGAATATCACCCCTGCT+AGG | + | chr6_4:27753173-27753192 | Msa0984060:CDS | 50.0% | |
| GATATGCTTAGCCCTAGCAG+GGG | - | chr6_4:27753188-27753207 | None:intergenic | 50.0% | |
| CGATATGCTTAGCCCTAGCA+GGG | - | chr6_4:27753189-27753208 | None:intergenic | 50.0% | |
| TCGATATGCTTAGCCCTAGC+AGG | - | chr6_4:27753190-27753209 | None:intergenic | 50.0% | |
| GATTTCAATGGTCGTCGCGC+TGG | + | chr6_4:27752182-27752201 | Msa0984060:CDS | 55.0% | |
| ACCCAGAGAAGGAGAGTCTG+TGG | + | chr6_4:27752255-27752274 | Msa0984060:CDS | 55.0% | |
| GCCACAGACTCTCCTTCTCT+GGG | - | chr6_4:27752259-27752278 | None:intergenic | 55.0% | |
| AGCCACAGACTCTCCTTCTC+TGG | - | chr6_4:27752260-27752279 | None:intergenic | 55.0% | |
| ATAGGCTCGGGAAGATCTGG+GGG | - | chr6_4:27752335-27752354 | None:intergenic | 55.0% | |
| CATAGGCTCGGGAAGATCTG+GGG | - | chr6_4:27752336-27752355 | None:intergenic | 55.0% | |
| GCATAGGCTCGGGAAGATCT+GGG | - | chr6_4:27752337-27752356 | None:intergenic | 55.0% | |
| AGCATAGGCTCGGGAAGATC+TGG | - | chr6_4:27752338-27752357 | None:intergenic | 55.0% | |
| AGATCTTCCCGAGCCTATGC+TGG | + | chr6_4:27752337-27752356 | Msa0984060:CDS | 55.0% | |
| GATCTTCCCGAGCCTATGCT+GGG | + | chr6_4:27752338-27752357 | Msa0984060:CDS | 55.0% | |
| TGCCCCAAAGTAGTGTGCCA+TGG | - | chr6_4:27752444-27752463 | None:intergenic | 55.0% | |
| ! | GTGCAACTCGAAAGTGCAGC+GGG | + | chr6_4:27752595-27752614 | Msa0984060:CDS | 55.0% |
| !! | GCAGCGGGCTATGAAATCTC+AGG | + | chr6_4:27752610-27752629 | Msa0984060:CDS | 55.0% |
| CACAGTATGGCTCACATCCC+TGG | - | chr6_4:27752688-27752707 | None:intergenic | 55.0% | |
| GATTTCAATGGTCGTCGCGC+TGG | + | chr6_4:27752182-27752201 | Msa0984060:CDS | 55.0% | |
| ACCCAGAGAAGGAGAGTCTG+TGG | + | chr6_4:27752255-27752274 | Msa0984060:CDS | 55.0% | |
| GCCACAGACTCTCCTTCTCT+GGG | - | chr6_4:27752259-27752278 | None:intergenic | 55.0% | |
| AGCCACAGACTCTCCTTCTC+TGG | - | chr6_4:27752260-27752279 | None:intergenic | 55.0% | |
| ATAGGCTCGGGAAGATCTGG+GGG | - | chr6_4:27752335-27752354 | None:intergenic | 55.0% | |
| CATAGGCTCGGGAAGATCTG+GGG | - | chr6_4:27752336-27752355 | None:intergenic | 55.0% | |
| GCATAGGCTCGGGAAGATCT+GGG | - | chr6_4:27752337-27752356 | None:intergenic | 55.0% | |
| AGCATAGGCTCGGGAAGATC+TGG | - | chr6_4:27752338-27752357 | None:intergenic | 55.0% | |
| AGATCTTCCCGAGCCTATGC+TGG | + | chr6_4:27752337-27752356 | Msa0984060:CDS | 55.0% | |
| GATCTTCCCGAGCCTATGCT+GGG | + | chr6_4:27752338-27752357 | Msa0984060:CDS | 55.0% | |
| TGCCCCAAAGTAGTGTGCCA+TGG | - | chr6_4:27752444-27752463 | None:intergenic | 55.0% | |
| ! | GTGCAACTCGAAAGTGCAGC+GGG | + | chr6_4:27752595-27752614 | Msa0984060:CDS | 55.0% |
| !! | GCAGCGGGCTATGAAATCTC+AGG | + | chr6_4:27752610-27752629 | Msa0984060:CDS | 55.0% |
| CACAGTATGGCTCACATCCC+TGG | - | chr6_4:27752688-27752707 | None:intergenic | 55.0% | |
| ! | TCGTCGCGCTGGTCTCATCA+AGG | + | chr6_4:27752193-27752212 | Msa0984060:CDS | 60.0% |
| ! | CCATCTCTGATGGGCGTGTG+TGG | - | chr6_4:27753027-27753046 | None:intergenic | 60.0% |
| CCACACACGCCCATCAGAGA+TGG | + | chr6_4:27753024-27753043 | Msa0984060:intron | 60.0% | |
| ! | TCGTCGCGCTGGTCTCATCA+AGG | + | chr6_4:27752193-27752212 | Msa0984060:CDS | 60.0% |
| ! | CCATCTCTGATGGGCGTGTG+TGG | - | chr6_4:27753027-27753046 | None:intergenic | 60.0% |
| CCACACACGCCCATCAGAGA+TGG | + | chr6_4:27753024-27753043 | Msa0984060:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 27751836 | 27753222 | 27751836 | ID=Msa0984060;Name=Msa0984060 |
| chr6_4 | mRNA | 27751836 | 27753222 | 27751836 | ID=Msa0984060-mRNA-1;Parent=Msa0984060;Name=Msa0984060-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|0.66|0.5|0.33|3|0|304 |
| chr6_4 | exon | 27751836 | 27751940 | 27751836 | ID=Msa0984060-mRNA-1:exon:7823;Parent=Msa0984060-mRNA-1 |
| chr6_4 | exon | 27752041 | 27752692 | 27752041 | ID=Msa0984060-mRNA-1:exon:7824;Parent=Msa0984060-mRNA-1 |
| chr6_4 | exon | 27753065 | 27753222 | 27753065 | ID=Msa0984060-mRNA-1:exon:7825;Parent=Msa0984060-mRNA-1 |
| chr6_4 | CDS | 27751836 | 27751940 | 27751836 | ID=Msa0984060-mRNA-1:cds;Parent=Msa0984060-mRNA-1 |
| chr6_4 | CDS | 27752041 | 27752692 | 27752041 | ID=Msa0984060-mRNA-1:cds;Parent=Msa0984060-mRNA-1 |
| chr6_4 | CDS | 27753065 | 27753222 | 27753065 | ID=Msa0984060-mRNA-1:cds;Parent=Msa0984060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
