Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984640 | ACJ85805.1 | 80.000 | 65 | 12 | 1 | 63 | 126 | 29 | 93 | 5.48e-25 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984640 | sp|Q6R032|MB3R5_ARATH | 55.556 | 63 | 27 | 1 | 68 | 130 | 50 | 111 | 3.79e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984640 | B7FM22 | 80.000 | 65 | 12 | 1 | 63 | 126 | 29 | 93 | 2.62e-25 | 110 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0984640 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984640 | MtrunA17_Chr7g0238631 | 80.000 | 65 | 12 | 1 | 63 | 126 | 29 | 93 | 5.25e-29 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984640 | AT2G13960.1 | 55.556 | 63 | 27 | 1 | 68 | 130 | 50 | 111 | 2.18e-17 | 73.6 |
| Msa0984640 | AT5G02320.1 | 55.556 | 63 | 27 | 1 | 68 | 130 | 50 | 111 | 3.86e-16 | 73.9 |
| Msa0984640 | AT5G02320.2 | 55.556 | 63 | 27 | 1 | 68 | 130 | 50 | 111 | 3.86e-16 | 73.9 |
| Msa0984640 | AT3G09370.3 | 57.576 | 66 | 24 | 2 | 68 | 130 | 63 | 127 | 1.38e-15 | 72.4 |
| Msa0984640 | AT3G09370.2 | 57.576 | 66 | 24 | 2 | 68 | 130 | 55 | 119 | 1.46e-15 | 72.4 |
| Msa0984640 | AT3G09370.1 | 57.576 | 66 | 24 | 2 | 68 | 130 | 50 | 114 | 1.62e-15 | 72.0 |
| Msa0984640 | AT2G13960.2 | 65.116 | 43 | 15 | 0 | 84 | 126 | 30 | 72 | 9.91e-15 | 65.9 |
| Msa0984640 | AT5G02320.3 | 59.574 | 47 | 19 | 0 | 84 | 130 | 5 | 51 | 1.93e-13 | 66.2 |
Find 44 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCCTTAGCGTGCCTTAT+AGG | 0.202151 | 6_4:+30140548 | None:intergenic |
| TATTGTAGGATGAGACATTA+AGG | 0.293653 | 6_4:-30140347 | Msa0984640:intron |
| GGAAAACATTGGAAGAAAAT+AGG | 0.311225 | 6_4:-30140303 | Msa0984640:CDS |
| TTGTAATCATGTCTCATAAC+TGG | 0.356897 | 6_4:-30139807 | Msa0984640:three_prime_UTR |
| TGCCACTTCAATAGAAAGAT+TGG | 0.375619 | 6_4:+30140145 | None:intergenic |
| ATTGAAGTGGCAAGGATGAT+TGG | 0.406073 | 6_4:-30140134 | Msa0984640:three_prime_UTR |
| GGAGGAGAACAAGTCCTATA+AGG | 0.409948 | 6_4:-30140562 | Msa0984640:CDS |
| TTTGCCTCTGCACTTTGAGC+TGG | 0.415507 | 6_4:-30139857 | Msa0984640:three_prime_UTR |
| GTAATGTTTCATACATTTCA+AGG | 0.423379 | 6_4:+30139958 | None:intergenic |
| GATCTGACAAGTCAACTTCA+TGG | 0.425571 | 6_4:+30143888 | None:intergenic |
| CACGATTGTTCTTGCAGATG+TGG | 0.428879 | 6_4:-30144041 | Msa0984640:CDS |
| CAGATGTGGGTTATTTCAAA+AGG | 0.443333 | 6_4:-30144027 | Msa0984640:CDS |
| TGGCGGTGTGGATGTAGCCA+TGG | 0.456366 | 6_4:+30140795 | None:intergenic |
| AGTATAATTCAAAAGTCTCC+AGG | 0.458256 | 6_4:-30140829 | Msa0984640:CDS |
| TTTGTCAAATGCATTAGCTC+AGG | 0.463353 | 6_4:+30140270 | None:intergenic |
| GTCCAATCTTTCTATTGAAG+TGG | 0.468597 | 6_4:-30140147 | Msa0984640:three_prime_UTR |
| TAGGTGGATAGAAAAGTTCA+TGG | 0.470301 | 6_4:-30143978 | Msa0984640:CDS |
| GAACAATCGTGTTGAGATCA+AGG | 0.474187 | 6_4:+30144053 | None:intergenic |
| ACAAGAACGCTTTCAGAAGA+AGG | 0.494100 | 6_4:+30143935 | None:intergenic |
| GGCGGTGTGGATGTAGCCAT+GGG | 0.509222 | 6_4:+30140796 | None:intergenic |
| TCCACCTACTCTCATGCATA+AGG | 0.509672 | 6_4:+30143993 | None:intergenic |
| AAGTCCTATAAGGCACGCTA+AGG | 0.528953 | 6_4:-30140552 | Msa0984640:CDS |
| GATTATGAAGTAAAGACAAA+AGG | 0.537647 | 6_4:+30140107 | None:intergenic |
| CTACTCTCATGCATAAGGCT+TGG | 0.545068 | 6_4:+30143998 | None:intergenic |
| ATCTTTCTATTGAAGTGGCA+AGG | 0.545324 | 6_4:-30140142 | Msa0984640:three_prime_UTR |
| GCCATGGGGCTACATATCCC+TGG | 0.552664 | 6_4:+30140811 | None:intergenic |
| TAAGGCACGCTAAGGGTGGT+TGG | 0.562887 | 6_4:-30140544 | Msa0984640:CDS |
| GCCTTATGCATGAGAGTAGG+TGG | 0.581512 | 6_4:-30143994 | Msa0984640:CDS |
| ACGATTGTTCTTGCAGATGT+GGG | 0.581772 | 6_4:-30144040 | Msa0984640:CDS |
| GGGTGGTTGGACAGCAGAAG+AGG | 0.605706 | 6_4:-30140531 | Msa0984640:intron |
| CAAGAACGCTTTCAGAAGAA+GGG | 0.608549 | 6_4:+30143936 | None:intergenic |
| AGGTGGATAGAAAAGTTCAT+GGG | 0.611466 | 6_4:-30143977 | Msa0984640:CDS |
| CCTATAAGGCACGCTAAGGG+TGG | 0.618742 | 6_4:-30140548 | Msa0984640:CDS |
| AGTCCTATAAGGCACGCTAA+GGG | 0.620051 | 6_4:-30140551 | Msa0984640:CDS |
| CAAGCCTTATGCATGAGAGT+AGG | 0.623848 | 6_4:-30143997 | Msa0984640:CDS |
| AACAAACATTACCGATGTGG+CGG | 0.629572 | 6_4:+30140778 | None:intergenic |
| ACAAACAAAATCAATAGCAG+AGG | 0.629915 | 6_4:+30139826 | None:intergenic |
| GTATAATTCAAAAGTCTCCA+GGG | 0.641290 | 6_4:-30140828 | Msa0984640:CDS |
| TCCAGGGATATGTAGCCCCA+TGG | 0.641883 | 6_4:-30140812 | Msa0984640:CDS |
| CATAACAAACATTACCGATG+TGG | 0.652260 | 6_4:+30140775 | None:intergenic |
| ATGTCCAGCTCAAAGTGCAG+AGG | 0.663657 | 6_4:+30139853 | None:intergenic |
| ACATTACCGATGTGGCGGTG+TGG | 0.672520 | 6_4:+30140783 | None:intergenic |
| CTACATCCACACCGCCACAT+CGG | 0.687858 | 6_4:-30140789 | Msa0984640:intron |
| GCGGTGTGGATGTAGCCATG+GGG | 0.754370 | 6_4:+30140797 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAATTTAAAATTTTA+GGG | + | chr6_4:30140882-30140901 | None:intergenic | 0.0% |
| !!! | ATATTTTAATTTAAAATTTT+AGG | + | chr6_4:30140883-30140902 | None:intergenic | 0.0% |
| !!! | GTTTTATTAGTAAAAAATTT+AGG | + | chr6_4:30140253-30140272 | None:intergenic | 10.0% |
| !! | AAATAATAAAAATAAACGAA+CGG | - | chr6_4:30140447-30140466 | Msa0984640:intron | 10.0% |
| !!! | AAGAAAATTTAAATATGTTT+TGG | + | chr6_4:30141046-30141065 | None:intergenic | 10.0% |
| !!! | TATTTTTTTATTTTTTTGTG+GGG | + | chr6_4:30141573-30141592 | None:intergenic | 10.0% |
| !! | AAATAATTAGTAATTAAAGA+TGG | + | chr6_4:30142492-30142511 | None:intergenic | 10.0% |
| !! | AACTAAGATCAATTATAATT+AGG | + | chr6_4:30140152-30140171 | None:intergenic | 15.0% |
| !!! | ATTTTTTACTAATAAAACCT+AGG | - | chr6_4:30140255-30140274 | Msa0984640:exon | 15.0% |
| !!! | TCTTTTTGTTTTTTCAATTT+AGG | + | chr6_4:30140481-30140500 | None:intergenic | 15.0% |
| !! | AAACAAAAAGAAATGAAAAA+TGG | - | chr6_4:30140490-30140509 | Msa0984640:intron | 15.0% |
| !!! | TTTAAATATGTTTTGGTTAT+TGG | + | chr6_4:30141039-30141058 | None:intergenic | 15.0% |
| !!! | AATAATAGAATTTCTAGATT+TGG | - | chr6_4:30141072-30141091 | Msa0984640:intron | 15.0% |
| !! | CATCAATTAATCAAATAAAT+TGG | + | chr6_4:30141276-30141295 | None:intergenic | 15.0% |
| !! | CTTCATTTAAAAAATTAAGA+TGG | + | chr6_4:30141784-30141803 | None:intergenic | 15.0% |
| !!! | TAAATGTGTGTTTTATATTT+AGG | - | chr6_4:30142580-30142599 | Msa0984640:intron | 15.0% |
| !!! | TCAAAAAACGTTTTTTTTAT+TGG | - | chr6_4:30142689-30142708 | Msa0984640:intron | 15.0% |
| !!! | TTTTTTTATTGGTTTTGTTT+TGG | - | chr6_4:30142700-30142719 | Msa0984640:intron | 15.0% |
| !!! | GATAAAGATTTTGTTTTTTT+GGG | - | chr6_4:30142722-30142741 | Msa0984640:intron | 15.0% |
| !!! | TTCTTGTCTTTGATTTTAAT+TGG | - | chr6_4:30139896-30139915 | Msa0984640:three_prime_UTR | 20.0% |
| !!! | CAATTAGTTTAAAATTAGAG+AGG | - | chr6_4:30140089-30140108 | Msa0984640:three_prime_UTR | 20.0% |
| !!! | GATAAAGTCTAGTTTTAATT+AGG | + | chr6_4:30140343-30140362 | None:intergenic | 20.0% |
| !!! | TTATTTTGCATTGCATTTTA+GGG | + | chr6_4:30140406-30140425 | None:intergenic | 20.0% |
| !!! | ATTATTTTGCATTGCATTTT+AGG | + | chr6_4:30140407-30140426 | None:intergenic | 20.0% |
| !!! | TATTTTTAGAGTCTTAGTTT+AGG | + | chr6_4:30140432-30140451 | None:intergenic | 20.0% |
| !! | GAAAACGTAAAAATAAAATG+CGG | - | chr6_4:30140659-30140678 | Msa0984640:intron | 20.0% |
| !! | ACTGTTAGTTATTTGATTAT+AGG | - | chr6_4:30141242-30141261 | Msa0984640:intron | 20.0% |
| !! | CTGTTAGTTATTTGATTATA+GGG | - | chr6_4:30141243-30141262 | Msa0984640:intron | 20.0% |
| !! | TGTTAGTTATTTGATTATAG+GGG | - | chr6_4:30141244-30141263 | Msa0984640:intron | 20.0% |
| !!! | AGATTGATAACAAATTGTAT+GGG | + | chr6_4:30141304-30141323 | None:intergenic | 20.0% |
| !!! | AATTTGTTATCAATCTCTTT+AGG | - | chr6_4:30141308-30141327 | Msa0984640:intron | 20.0% |
| !! | GTATATAAATTAGCATGAAT+GGG | + | chr6_4:30141374-30141393 | None:intergenic | 20.0% |
| !! | TAATTTATATACCTTTGACT+AGG | - | chr6_4:30141382-30141401 | Msa0984640:intron | 20.0% |
| !! | AATTTATATACCTTTGACTA+GGG | - | chr6_4:30141383-30141402 | Msa0984640:intron | 20.0% |
| !! | TAATTAAAGTGGAAATCAAT+GGG | + | chr6_4:30141423-30141442 | None:intergenic | 20.0% |
| !! | TTAATTAAAGTGGAAATCAA+TGG | + | chr6_4:30141424-30141443 | None:intergenic | 20.0% |
| !!! | GGATAAAGATTTTGTTTTTT+TGG | - | chr6_4:30142721-30142740 | Msa0984640:intron | 20.0% |
| !!! | TTTTTTTGGGAAAAAATTGA+AGG | - | chr6_4:30142735-30142754 | Msa0984640:intron | 20.0% |
| !!! | TGGATTTTTTTTTTATACTG+AGG | - | chr6_4:30142823-30142842 | Msa0984640:intron | 20.0% |
| !!! | TTTTTTTTTTATACTGAGGA+TGG | - | chr6_4:30142827-30142846 | Msa0984640:intron | 20.0% |
| !!! | TTTTTAGGGTTTTTTATGTT+TGG | - | chr6_4:30142850-30142869 | Msa0984640:intron | 20.0% |
| !!! | TGTTATGTTATTTACGTTTT+TGG | - | chr6_4:30143056-30143075 | Msa0984640:intron | 20.0% |
| !!! | CATTTTAATTAGAAAGATTG+AGG | - | chr6_4:30143745-30143764 | Msa0984640:intron | 20.0% |
| ! | GAAAAATGGTTAGTACTAAA+TGG | - | chr6_4:30140504-30140523 | Msa0984640:intron | 25.0% |
| ! | GCAAAACAGAAAAATAAACT+AGG | - | chr6_4:30140543-30140562 | Msa0984640:CDS | 25.0% |
| !! | CAACTATGACAACATATTTT+TGG | - | chr6_4:30140629-30140648 | Msa0984640:intron | 25.0% |
| ! | TGATTACTTGGTAAATGATT+TGG | + | chr6_4:30140803-30140822 | None:intergenic | 25.0% |
| ! | CTACTTATCATTTGATTACT+TGG | + | chr6_4:30140815-30140834 | None:intergenic | 25.0% |
| !! | CAACATATTACCTCTAATTT+TGG | + | chr6_4:30141146-30141165 | None:intergenic | 25.0% |
| ! | CAAAATTAGAGGTAATATGT+TGG | - | chr6_4:30141144-30141163 | Msa0984640:intron | 25.0% |
| ! | AAAAAAAAACCTAACAGTGT+TGG | + | chr6_4:30141207-30141226 | None:intergenic | 25.0% |
| !! | GAGATTGATAACAAATTGTA+TGG | + | chr6_4:30141305-30141324 | None:intergenic | 25.0% |
| ! | GGTATATAAATTAGCATGAA+TGG | + | chr6_4:30141375-30141394 | None:intergenic | 25.0% |
| ! | ATCAAGGGAATTAATTAAAG+TGG | + | chr6_4:30141434-30141453 | None:intergenic | 25.0% |
| ! | AAAAAATGTTGAGAGTTTGA+TGG | + | chr6_4:30141488-30141507 | None:intergenic | 25.0% |
| ! | GATAATGATTATGTAGTGAA+TGG | + | chr6_4:30141603-30141622 | None:intergenic | 25.0% |
| !!! | AGACTTATTTTGATGATCAA+AGG | + | chr6_4:30141630-30141649 | None:intergenic | 25.0% |
| !!! | AATTGCATAGGGTTTTTTTA+GGG | + | chr6_4:30141825-30141844 | None:intergenic | 25.0% |
| ! | TTTAACCTAAAATTTGCCTA+GGG | + | chr6_4:30141886-30141905 | None:intergenic | 25.0% |
| !! | TTTTAACCTAAAATTTGCCT+AGG | + | chr6_4:30141887-30141906 | None:intergenic | 25.0% |
| !! | GGATCATTTAAATTTGAGAT+AGG | - | chr6_4:30141964-30141983 | Msa0984640:intron | 25.0% |
| ! | AACATGTTTACACGTTTAAT+AGG | - | chr6_4:30141990-30142009 | Msa0984640:intron | 25.0% |
| ! | ACATGTTTACACGTTTAATA+GGG | - | chr6_4:30141991-30142010 | Msa0984640:intron | 25.0% |
| ! | TCTCTAATTGGTCAATTATT+TGG | + | chr6_4:30142057-30142076 | None:intergenic | 25.0% |
| ! | TCTTTCAAGATATGATTTGA+AGG | - | chr6_4:30142109-30142128 | Msa0984640:intron | 25.0% |
| ! | TCATCTTCAAATCATATCTA+GGG | - | chr6_4:30142403-30142422 | Msa0984640:intron | 25.0% |
| ! | TTGTAAAAGTAAATCCATTG+AGG | + | chr6_4:30142540-30142559 | None:intergenic | 25.0% |
| !! | TTTCAAGAGTTTTTGTGTTT+TGG | - | chr6_4:30142642-30142661 | Msa0984640:intron | 25.0% |
| !!! | AGTTTTTGTGTTTTGGATAA+AGG | - | chr6_4:30142649-30142668 | Msa0984640:intron | 25.0% |
| !!! | GTTTTTGTGTTTTGGATAAA+GGG | - | chr6_4:30142650-30142669 | Msa0984640:intron | 25.0% |
| !!! | TTTTTGTGTTTTGGATAAAG+GGG | - | chr6_4:30142651-30142670 | Msa0984640:intron | 25.0% |
| !!! | TGAAGGTTTTGATTTGATTA+TGG | - | chr6_4:30142752-30142771 | Msa0984640:intron | 25.0% |
| !!! | TTTTTATGTTTGGTGATTGA+TGG | - | chr6_4:30142860-30142879 | Msa0984640:intron | 25.0% |
| !!! | TTTTATGTTTGGTGATTGAT+GGG | - | chr6_4:30142861-30142880 | Msa0984640:intron | 25.0% |
| ! | AATTAAACCAATAGCAGATT+TGG | + | chr6_4:30143143-30143162 | None:intergenic | 25.0% |
| !! | AATTGGGAATTTTGTTCATT+TGG | - | chr6_4:30143366-30143385 | Msa0984640:intron | 25.0% |
| ! | AATAACTTATATACATGCAG+AGG | + | chr6_4:30143419-30143438 | None:intergenic | 25.0% |
| ! | ATTGAAGAACACAATAAGAA+TGG | + | chr6_4:30143447-30143466 | None:intergenic | 25.0% |
| ! | TGTGTTCTTCAATTTATTGT+AGG | - | chr6_4:30143454-30143473 | Msa0984640:intron | 25.0% |
| ! | GATTATGAAGTAAAGACAAA+AGG | + | chr6_4:30143711-30143730 | None:intergenic | 25.0% |
| ! | GTAATGTTTCATACATTTCA+AGG | + | chr6_4:30143860-30143879 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTGTTGATTTTGT+TGG | - | chr6_4:30143927-30143946 | Msa0984640:CDS | 25.0% |
| GTGTTGTATTAACTTCTTGA+AGG | + | chr6_4:30140059-30140078 | None:intergenic | 30.0% | |
| AGTAATAGTCATAAAGTCCT+AGG | + | chr6_4:30140275-30140294 | None:intergenic | 30.0% | |
| !!! | AATTTTAGGGTGTTACAGTT+TGG | + | chr6_4:30140869-30140888 | None:intergenic | 30.0% |
| ATGAGATGTAGCTTATTGTT+AGG | - | chr6_4:30141007-30141026 | Msa0984640:intron | 30.0% | |
| AATACTAGAATTTGCCTACA+CGG | + | chr6_4:30141349-30141368 | None:intergenic | 30.0% | |
| GGAATACGTTACAAAATCAA+GGG | + | chr6_4:30141449-30141468 | None:intergenic | 30.0% | |
| AGGAATACGTTACAAAATCA+AGG | + | chr6_4:30141450-30141469 | None:intergenic | 30.0% | |
| CTACTCTTTAGTAAGTCTTA+AGG | - | chr6_4:30141659-30141678 | Msa0984640:intron | 30.0% | |
| AAGACTTGACATATGAACAA+CGG | + | chr6_4:30141715-30141734 | None:intergenic | 30.0% | |
| TAAGAGAATGTACACTCTAA+AGG | + | chr6_4:30141741-30141760 | None:intergenic | 30.0% | |
| !!! | GAATTGCATAGGGTTTTTTT+AGG | + | chr6_4:30141826-30141845 | None:intergenic | 30.0% |
| AAATTGGTTGGAATTGCATA+GGG | + | chr6_4:30141836-30141855 | None:intergenic | 30.0% | |
| CAAATTTAAATGATCCCAGT+TGG | + | chr6_4:30141960-30141979 | None:intergenic | 30.0% | |
| CATGTTTACACGTTTAATAG+GGG | - | chr6_4:30141992-30142011 | Msa0984640:intron | 30.0% | |
| ! | TTTTGCTTGTAGTCATGTTT+GGG | + | chr6_4:30142084-30142103 | None:intergenic | 30.0% |
| ! | TTTTTGCTTGTAGTCATGTT+TGG | + | chr6_4:30142085-30142104 | None:intergenic | 30.0% |
| GAAGGAAAGAAATGTTACAT+AGG | + | chr6_4:30142159-30142178 | None:intergenic | 30.0% | |
| !! | TTTTGAAAAGAGAGAAAGGA+AGG | + | chr6_4:30142177-30142196 | None:intergenic | 30.0% |
| ! | CCTTTCTCTCTTTTCAAAAT+CGG | - | chr6_4:30142178-30142197 | Msa0984640:intron | 30.0% |
| ! | TTGAAGGAGATTTTGTGAAT+CGG | + | chr6_4:30142340-30142359 | None:intergenic | 30.0% |
| CTCATCTTCAAATCATATCT+AGG | - | chr6_4:30142402-30142421 | Msa0984640:intron | 30.0% | |
| !!! | TAAAGGGGTTTGATTTGTTT+TGG | - | chr6_4:30142666-30142685 | Msa0984640:intron | 30.0% |
| !!! | TGATTATGGATTTTGAGATC+TGG | - | chr6_4:30142766-30142785 | Msa0984640:intron | 30.0% |
| !!! | GATTATGGATTTTGAGATCT+GGG | - | chr6_4:30142767-30142786 | Msa0984640:intron | 30.0% |
| ! | TGTGTAAAAGTGTGAAAGTT+TGG | - | chr6_4:30142803-30142822 | Msa0984640:intron | 30.0% |
| ! | TTATACTGAGGATGGTTTTT+AGG | - | chr6_4:30142835-30142854 | Msa0984640:intron | 30.0% |
| ! | TATACTGAGGATGGTTTTTA+GGG | - | chr6_4:30142836-30142855 | Msa0984640:intron | 30.0% |
| !! | TTTTTAGGGATTGAAGGTTT+TGG | - | chr6_4:30142884-30142903 | Msa0984640:intron | 30.0% |
| AGTATAATTCAAAAGTCTCC+AGG | - | chr6_4:30142986-30143005 | Msa0984640:intron | 30.0% | |
| GTATAATTCAAAAGTCTCCA+GGG | - | chr6_4:30142987-30143006 | Msa0984640:intron | 30.0% | |
| TTTGGTTGCAGTTGTAATTA+TGG | - | chr6_4:30143074-30143093 | Msa0984640:intron | 30.0% | |
| ! | TTTTATGCCAAATCTGCTAT+TGG | - | chr6_4:30143133-30143152 | Msa0984640:intron | 30.0% |
| ACCATATGATATGTTTGTAC+AGG | - | chr6_4:30143232-30143251 | Msa0984640:intron | 30.0% | |
| TCCTGTACAAACATATCATA+TGG | + | chr6_4:30143236-30143255 | None:intergenic | 30.0% | |
| ATATGATATGTTTGTACAGG+AGG | - | chr6_4:30143235-30143254 | Msa0984640:intron | 30.0% | |
| AGAGGTTCATATTTGCTTAT+TGG | - | chr6_4:30143302-30143321 | Msa0984640:intron | 30.0% | |
| TATATACATGCAGAGGTAAA+TGG | + | chr6_4:30143412-30143431 | None:intergenic | 30.0% | |
| TATTGTAGGATGAGACATTA+AGG | - | chr6_4:30143468-30143487 | Msa0984640:intron | 30.0% | |
| ! | TTTTCCCTTAAAAGCTGTAA+CGG | + | chr6_4:30143498-30143517 | None:intergenic | 30.0% |
| GGAAAACATTGGAAGAAAAT+AGG | - | chr6_4:30143512-30143531 | Msa0984640:intron | 30.0% | |
| !!! | TTGTTGATTTTGTTGGCTAT+TGG | - | chr6_4:30143934-30143953 | Msa0984640:CDS | 30.0% |
| ACAAACAAAATCAATAGCAG+AGG | + | chr6_4:30143992-30144011 | None:intergenic | 30.0% | |
| TTGTAATCATGTCTCATAAC+TGG | - | chr6_4:30144008-30144027 | Msa0984640:CDS | 30.0% | |
| ! | CAGATGTGGGTTATTTCAAA+AGG | - | chr6_4:30139788-30139807 | Msa0984640:three_prime_UTR | 35.0% |
| TAGGTGGATAGAAAAGTTCA+TGG | - | chr6_4:30139837-30139856 | Msa0984640:three_prime_UTR | 35.0% | |
| AGGTGGATAGAAAAGTTCAT+GGG | - | chr6_4:30139838-30139857 | Msa0984640:three_prime_UTR | 35.0% | |
| AACAACAAGGAAAACAACAG+GGG | + | chr6_4:30139993-30140012 | None:intergenic | 35.0% | |
| GAACAACAAGGAAAACAACA+GGG | + | chr6_4:30139994-30140013 | None:intergenic | 35.0% | |
| TGACAACTAAACGAACAACA+AGG | + | chr6_4:30140006-30140025 | None:intergenic | 35.0% | |
| !! | TGAAGGTATCCAAACTGAAA+AGG | + | chr6_4:30140042-30140061 | None:intergenic | 35.0% |
| AAGAGTCAGTCAATAGCATT+AGG | + | chr6_4:30140308-30140327 | None:intergenic | 35.0% | |
| !! | TTTTGCATTGCATTTTAGGG+AGG | + | chr6_4:30140403-30140422 | None:intergenic | 35.0% |
| TCGAAAATATCAACAATCCC+CGG | - | chr6_4:30140736-30140755 | Msa0984640:intron | 35.0% | |
| ! | TAATCCGCACATCAAGTTTT+TGG | + | chr6_4:30140770-30140789 | None:intergenic | 35.0% |
| GCATGCATGCATATCATTAT+AGG | - | chr6_4:30141108-30141127 | Msa0984640:intron | 35.0% | |
| TGCATGCATATCATTATAGG+TGG | - | chr6_4:30141111-30141130 | Msa0984640:intron | 35.0% | |
| GCATGCATATCATTATAGGT+GGG | - | chr6_4:30141112-30141131 | Msa0984640:intron | 35.0% | |
| AATTTCCTTCCAACACTGTT+AGG | - | chr6_4:30141195-30141214 | Msa0984640:intron | 35.0% | |
| ! | AAAAACCTAACAGTGTTGGA+AGG | + | chr6_4:30141203-30141222 | None:intergenic | 35.0% |
| AAAATCTCATAGAACCGTGT+AGG | - | chr6_4:30141332-30141351 | Msa0984640:intron | 35.0% | |
| AAAGTAGTTACCCTAGTCAA+AGG | + | chr6_4:30141396-30141415 | None:intergenic | 35.0% | |
| ! | GATGGATGTAACTTGTAAGA+AGG | + | chr6_4:30141470-30141489 | None:intergenic | 35.0% |
| CTGATTGTTCTTGTGTAGAT+GGG | + | chr6_4:30141520-30141539 | None:intergenic | 35.0% | |
| ACTGATTGTTCTTGTGTAGA+TGG | + | chr6_4:30141521-30141540 | None:intergenic | 35.0% | |
| TCAGTAAGAGAAGAAAAGAG+AGG | - | chr6_4:30141536-30141555 | Msa0984640:intron | 35.0% | |
| AGACTTACTAAAGAGTAGAG+CGG | + | chr6_4:30141657-30141676 | None:intergenic | 35.0% | |
| TTGACATATGAACAACGGAA+TGG | + | chr6_4:30141710-30141729 | None:intergenic | 35.0% | |
| CAAATTGGTTGGAATTGCAT+AGG | + | chr6_4:30141837-30141856 | None:intergenic | 35.0% | |
| ! | GAAAACCCTAGGCAAATTTT+AGG | - | chr6_4:30141878-30141897 | Msa0984640:intron | 35.0% |
| AAAAGTCTGAATTACCCTTC+TGG | - | chr6_4:30141903-30141922 | Msa0984640:intron | 35.0% | |
| AGAAACTCAAAATGCCATAG+TGG | - | chr6_4:30141931-30141950 | Msa0984640:intron | 35.0% | |
| GAAACTCAAAATGCCATAGT+GGG | - | chr6_4:30141932-30141951 | Msa0984640:intron | 35.0% | |
| GAAATGTTACATAGGAAACG+TGG | + | chr6_4:30142151-30142170 | None:intergenic | 35.0% | |
| !! | CCGATTTTGAAAAGAGAGAA+AGG | + | chr6_4:30142181-30142200 | None:intergenic | 35.0% |
| ATCAGGGTTTGGATTTATGT+TGG | + | chr6_4:30142227-30142246 | None:intergenic | 35.0% | |
| AGGGAAAGAAGATAAAGAAG+GGG | + | chr6_4:30142272-30142291 | None:intergenic | 35.0% | |
| GAGGGAAAGAAGATAAAGAA+GGG | + | chr6_4:30142273-30142292 | None:intergenic | 35.0% | |
| TGAGGGAAAGAAGATAAAGA+AGG | + | chr6_4:30142274-30142293 | None:intergenic | 35.0% | |
| TTTGTGAATCGGAGAAGAAA+GGG | + | chr6_4:30142329-30142348 | None:intergenic | 35.0% | |
| ! | TTTTGTGAATCGGAGAAGAA+AGG | + | chr6_4:30142330-30142349 | None:intergenic | 35.0% |
| ACAAAATCTCCTTCAAGATG+CGG | - | chr6_4:30142344-30142363 | Msa0984640:intron | 35.0% | |
| AATTGAAAACCGCATCTTGA+AGG | + | chr6_4:30142356-30142375 | None:intergenic | 35.0% | |
| ! | TCAAGATGCGGTTTTCAATT+CGG | - | chr6_4:30142356-30142375 | Msa0984640:intron | 35.0% |
| TGTTTGATTGAATGCCTCAA+TGG | - | chr6_4:30142523-30142542 | Msa0984640:intron | 35.0% | |
| !!! | TTGGTGATTGATGGGTTTTT+AGG | - | chr6_4:30142869-30142888 | Msa0984640:intron | 35.0% |
| !!! | TGGTGATTGATGGGTTTTTA+GGG | - | chr6_4:30142870-30142889 | Msa0984640:intron | 35.0% |
| !! | GGATATGGATGTTTGTTGTT+TGG | - | chr6_4:30142911-30142930 | Msa0984640:intron | 35.0% |
| CATAACAAACATTACCGATG+TGG | + | chr6_4:30143043-30143062 | None:intergenic | 35.0% | |
| GAATCAGCAACTAATGTAGA+AGG | + | chr6_4:30143169-30143188 | None:intergenic | 35.0% | |
| !! | ATTAGTTGCTGATTCACTTC+TGG | - | chr6_4:30143174-30143193 | Msa0984640:intron | 35.0% |
| !! | ATTCAATCCACTTTTCTGGA+AGG | + | chr6_4:30143349-30143368 | None:intergenic | 35.0% |
| !! | TCCAGAAAAGTGGATTGAAT+TGG | - | chr6_4:30143349-30143368 | Msa0984640:intron | 35.0% |
| !! | CCAGAAAAGTGGATTGAATT+GGG | - | chr6_4:30143350-30143369 | Msa0984640:intron | 35.0% |
| GTAAATGGTCATTGTCAAAG+AGG | + | chr6_4:30143397-30143416 | None:intergenic | 35.0% | |
| ! | AATGCCGTTACAGCTTTTAA+GGG | - | chr6_4:30143491-30143510 | Msa0984640:intron | 35.0% |
| !! | CAGCTTTTAAGGGAAAACAT+TGG | - | chr6_4:30143501-30143520 | Msa0984640:intron | 35.0% |
| TTTGTCAAATGCATTAGCTC+AGG | + | chr6_4:30143548-30143567 | None:intergenic | 35.0% | |
| GTCCAATCTTTCTATTGAAG+TGG | - | chr6_4:30143668-30143687 | Msa0984640:intron | 35.0% | |
| ! | TGCCACTTCAATAGAAAGAT+TGG | + | chr6_4:30143673-30143692 | None:intergenic | 35.0% |
| ATCTTTCTATTGAAGTGGCA+AGG | - | chr6_4:30143673-30143692 | Msa0984640:intron | 35.0% | |
| GAACAATCGTGTTGAGATCA+AGG | + | chr6_4:30139765-30139784 | None:intergenic | 40.0% | |
| ACGATTGTTCTTGCAGATGT+GGG | - | chr6_4:30139775-30139794 | Msa0984640:three_prime_UTR | 40.0% | |
| CAAGAACGCTTTCAGAAGAA+GGG | + | chr6_4:30139882-30139901 | None:intergenic | 40.0% | |
| ACAAGAACGCTTTCAGAAGA+AGG | + | chr6_4:30139883-30139902 | None:intergenic | 40.0% | |
| GATCTGACAAGTCAACTTCA+TGG | + | chr6_4:30139930-30139949 | None:intergenic | 40.0% | |
| ACAACAAGGAAAACAACAGG+GGG | + | chr6_4:30139992-30140011 | None:intergenic | 40.0% | |
| CGAACAACAAGGAAAACAAC+AGG | + | chr6_4:30139995-30140014 | None:intergenic | 40.0% | |
| ACTGAAAAGGACGATCAACT+TGG | + | chr6_4:30140029-30140048 | None:intergenic | 40.0% | |
| ! | GTTGATCGTCCTTTTCAGTT+TGG | - | chr6_4:30140030-30140049 | Msa0984640:three_prime_UTR | 40.0% |
| GACTCTATGTAATGCAGACT+CGG | - | chr6_4:30140202-30140221 | Msa0984640:three_prime_UTR | 40.0% | |
| GGACGAAATGACAATTTCTG+TGG | + | chr6_4:30140848-30140867 | None:intergenic | 40.0% | |
| TATGCATGCATGCAACATAG+AGG | + | chr6_4:30141101-30141120 | None:intergenic | 40.0% | |
| !! | GGAGTGTTGACCAAAATTAG+AGG | - | chr6_4:30141133-30141152 | Msa0984640:intron | 40.0% |
| TATGAACAACGGAATGGAAG+AGG | + | chr6_4:30141704-30141723 | None:intergenic | 40.0% | |
| TTCCAACCAATTTGTACTGC+AGG | - | chr6_4:30141843-30141862 | Msa0984640:intron | 40.0% | |
| AACCTGCAGTACAAATTGGT+TGG | + | chr6_4:30141848-30141867 | None:intergenic | 40.0% | |
| ATGGAACCTGCAGTACAAAT+TGG | + | chr6_4:30141852-30141871 | None:intergenic | 40.0% | |
| ATTTGTACTGCAGGTTCCAT+TGG | - | chr6_4:30141852-30141871 | Msa0984640:intron | 40.0% | |
| TGAGTTTCTTTCCACCAGAA+GGG | + | chr6_4:30141920-30141939 | None:intergenic | 40.0% | |
| TTGAGTTTCTTTCCACCAGA+AGG | + | chr6_4:30141921-30141940 | None:intergenic | 40.0% | |
| !! | ATAGGGGCTAGCTATAATGA+TGG | - | chr6_4:30142008-30142027 | Msa0984640:intron | 40.0% |
| TGTTTGGGCTTCTCTCTAAT+TGG | + | chr6_4:30142069-30142088 | None:intergenic | 40.0% | |
| ! | GTTTGGATTTATGTTGGTGG+AGG | + | chr6_4:30142221-30142240 | None:intergenic | 40.0% |
| AGGGTTTGGATTTATGTTGG+TGG | + | chr6_4:30142224-30142243 | None:intergenic | 40.0% | |
| AGAAGGGGAAAATAGTGTGA+GGG | + | chr6_4:30142257-30142276 | None:intergenic | 40.0% | |
| AAGAAGGGGAAAATAGTGTG+AGG | + | chr6_4:30142258-30142277 | None:intergenic | 40.0% | |
| !! | GATGGGTTTTTAGGGATTGA+AGG | - | chr6_4:30142878-30142897 | Msa0984640:intron | 40.0% |
| !! | GAAGGTTTTGGTGAAGGATA+TGG | - | chr6_4:30142896-30142915 | Msa0984640:intron | 40.0% |
| AACAAACATTACCGATGTGG+CGG | + | chr6_4:30143040-30143059 | None:intergenic | 40.0% | |
| ! | TTTTCCTCCTTCCAGAAAAG+TGG | - | chr6_4:30143339-30143358 | Msa0984640:intron | 40.0% |
| !! | CCCAATTCAATCCACTTTTC+TGG | + | chr6_4:30143353-30143372 | None:intergenic | 40.0% |
| ! | GAATGCCGTTACAGCTTTTA+AGG | - | chr6_4:30143490-30143509 | Msa0984640:intron | 40.0% |
| ATTGAAGTGGCAAGGATGAT+TGG | - | chr6_4:30143681-30143700 | Msa0984640:intron | 40.0% | |
| CACGATTGTTCTTGCAGATG+TGG | - | chr6_4:30139774-30139793 | Msa0984640:three_prime_UTR | 45.0% | |
| CTACTCTCATGCATAAGGCT+TGG | + | chr6_4:30139820-30139839 | None:intergenic | 45.0% | |
| ! | CAAGCCTTATGCATGAGAGT+AGG | - | chr6_4:30139818-30139837 | Msa0984640:three_prime_UTR | 45.0% |
| TCCACCTACTCTCATGCATA+AGG | + | chr6_4:30139825-30139844 | None:intergenic | 45.0% | |
| ACTTTCTTCACCTCTCCCAT+TGG | - | chr6_4:30139962-30139981 | Msa0984640:three_prime_UTR | 45.0% | |
| AGCGCCAAAAACTTGATGTG+CGG | - | chr6_4:30140763-30140782 | Msa0984640:intron | 45.0% | |
| !! | TTAGGGTTTGCTAGCAGAAC+TGG | + | chr6_4:30141808-30141827 | None:intergenic | 45.0% |
| AGTCTGAATTACCCTTCTGG+TGG | - | chr6_4:30141906-30141925 | Msa0984640:intron | 45.0% | |
| ! | TGGATTTATGTTGGTGGAGG+TGG | + | chr6_4:30142218-30142237 | None:intergenic | 45.0% |
| AGGGAGAAGATATCAGGGTT+TGG | + | chr6_4:30142238-30142257 | None:intergenic | 45.0% | |
| GTGTGAGGGAGAAGATATCA+GGG | + | chr6_4:30142243-30142262 | None:intergenic | 45.0% | |
| AGTGTGAGGGAGAAGATATC+AGG | + | chr6_4:30142244-30142263 | None:intergenic | 45.0% | |
| ! | TGGCAAAGAGAAGCATGTGA+GGG | + | chr6_4:30142291-30142310 | None:intergenic | 45.0% |
| !! | GGGATTGAAGGTTTTGGTGA+AGG | - | chr6_4:30142890-30142909 | Msa0984640:intron | 45.0% |
| TCTTGCTCATCTGTGTCTGA+AGG | - | chr6_4:30142956-30142975 | Msa0984640:intron | 45.0% | |
| GGAGGAGAACAAGTCCTATA+AGG | - | chr6_4:30143253-30143272 | Msa0984640:intron | 45.0% | |
| AAGTCCTATAAGGCACGCTA+AGG | - | chr6_4:30143263-30143282 | Msa0984640:intron | 45.0% | |
| AGTCCTATAAGGCACGCTAA+GGG | - | chr6_4:30143264-30143283 | Msa0984640:intron | 45.0% | |
| !! | CAATCCACTTTTCTGGAAGG+AGG | + | chr6_4:30143346-30143365 | None:intergenic | 45.0% |
| !!! | TTATTTTTTTATTTTTTTGT+GGG | + | chr6_4:30141574-30141593 | None:intergenic | 5.0% |
| !!! | TTTATTTTTTTATTTTTTTG+TGG | + | chr6_4:30141575-30141594 | None:intergenic | 5.0% |
| GCCTTATGCATGAGAGTAGG+TGG | - | chr6_4:30139821-30139840 | Msa0984640:three_prime_UTR | 50.0% | |
| ACAACAGGGGGAAGACCAAT+GGG | + | chr6_4:30139980-30139999 | None:intergenic | 50.0% | |
| AACAACAGGGGGAAGACCAA+TGG | + | chr6_4:30139981-30140000 | None:intergenic | 50.0% | |
| !!! | AAGTTTTTGGCGCTGTTGCC+GGG | + | chr6_4:30140757-30140776 | None:intergenic | 50.0% |
| !!! | CAAGTTTTTGGCGCTGTTGC+CGG | + | chr6_4:30140758-30140777 | None:intergenic | 50.0% |
| TGTACTGCAGGTTCCATTGG+CGG | - | chr6_4:30141855-30141874 | Msa0984640:intron | 50.0% | |
| ! | GTGGCAAAGAGAAGCATGTG+AGG | + | chr6_4:30142292-30142311 | None:intergenic | 50.0% |
| AGAAAGGGAGGAGGTTCAGA+TGG | + | chr6_4:30142314-30142333 | None:intergenic | 50.0% | |
| AATCGGAGAAGAAAGGGAGG+AGG | + | chr6_4:30142323-30142342 | None:intergenic | 50.0% | |
| GTGAATCGGAGAAGAAAGGG+AGG | + | chr6_4:30142326-30142345 | None:intergenic | 50.0% | |
| TTTGCCTCTGCACTTTGAGC+TGG | - | chr6_4:30143958-30143977 | Msa0984640:CDS | 50.0% | |
| ATGTCCAGCTCAAAGTGCAG+AGG | + | chr6_4:30143965-30143984 | None:intergenic | 50.0% | |
| !!! | AGTTTTTGGCGCTGTTGCCG+GGG | + | chr6_4:30140756-30140775 | None:intergenic | 55.0% |
| GTACTGCAGGTTCCATTGGC+GGG | - | chr6_4:30141856-30141875 | Msa0984640:intron | 55.0% | |
| TCCATTGGCGGGAAAACCCT+AGG | - | chr6_4:30141867-30141886 | Msa0984640:intron | 55.0% | |
| AAGGGAGGAGGTTCAGATGG+TGG | + | chr6_4:30142311-30142330 | None:intergenic | 55.0% | |
| TCCAGGGATATGTAGCCCCA+TGG | - | chr6_4:30143003-30143022 | Msa0984640:intron | 55.0% | |
| CTACATCCACACCGCCACAT+CGG | - | chr6_4:30143026-30143045 | Msa0984640:intron | 55.0% | |
| ACATTACCGATGTGGCGGTG+TGG | + | chr6_4:30143035-30143054 | None:intergenic | 55.0% | |
| CCACCCTTAGCGTGCCTTAT+AGG | + | chr6_4:30143270-30143289 | None:intergenic | 55.0% | |
| CCTATAAGGCACGCTAAGGG+TGG | - | chr6_4:30143267-30143286 | Msa0984640:intron | 55.0% | |
| TAAGGCACGCTAAGGGTGGT+TGG | - | chr6_4:30143271-30143290 | Msa0984640:intron | 55.0% | |
| AGGGGGAAGACCAATGGGAG+AGG | + | chr6_4:30139975-30139994 | None:intergenic | 60.0% | |
| ! | GCCTAGGGTTTTCCCGCCAA+TGG | + | chr6_4:30141871-30141890 | None:intergenic | 60.0% |
| !! | ATGCCATAGTGGGCGCCAAC+TGG | - | chr6_4:30141942-30141961 | Msa0984640:intron | 60.0% |
| !! | TGCCATAGTGGGCGCCAACT+GGG | - | chr6_4:30141943-30141962 | Msa0984640:intron | 60.0% |
| ATCCCAGTTGGCGCCCACTA+TGG | + | chr6_4:30141948-30141967 | None:intergenic | 60.0% | |
| GCCATGGGGCTACATATCCC+TGG | + | chr6_4:30143007-30143026 | None:intergenic | 60.0% | |
| GCGGTGTGGATGTAGCCATG+GGG | + | chr6_4:30143021-30143040 | None:intergenic | 60.0% | |
| GGCGGTGTGGATGTAGCCAT+GGG | + | chr6_4:30143022-30143041 | None:intergenic | 60.0% | |
| TGGCGGTGTGGATGTAGCCA+TGG | + | chr6_4:30143023-30143042 | None:intergenic | 60.0% | |
| GGGTGGTTGGACAGCAGAAG+AGG | - | chr6_4:30143284-30143303 | Msa0984640:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 30139757 | 30144080 | 30139757 | ID=Msa0984640;Name=Msa0984640 |
| chr6_4 | mRNA | 30139757 | 30144080 | 30139757 | ID=Msa0984640-mRNA-1;Parent=Msa0984640;Name=Msa0984640-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0.66|0.5|0.75|1|1|4|509|132 |
| chr6_4 | exon | 30139757 | 30140361 | 30139757 | ID=Msa0984640-mRNA-1:exon:8108;Parent=Msa0984640-mRNA-1 |
| chr6_4 | exon | 30140532 | 30140583 | 30140532 | ID=Msa0984640-mRNA-1:exon:8107;Parent=Msa0984640-mRNA-1 |
| chr6_4 | exon | 30140790 | 30140855 | 30140790 | ID=Msa0984640-mRNA-1:exon:8106;Parent=Msa0984640-mRNA-1 |
| chr6_4 | exon | 30143896 | 30144080 | 30143896 | ID=Msa0984640-mRNA-1:exon:8105;Parent=Msa0984640-mRNA-1 |
| chr6_4 | CDS | 30143896 | 30144080 | 30143896 | ID=Msa0984640-mRNA-1:cds;Parent=Msa0984640-mRNA-1 |
| chr6_4 | CDS | 30140790 | 30140855 | 30140790 | ID=Msa0984640-mRNA-1:cds;Parent=Msa0984640-mRNA-1 |
| chr6_4 | CDS | 30140532 | 30140583 | 30140532 | ID=Msa0984640-mRNA-1:cds;Parent=Msa0984640-mRNA-1 |
| chr6_4 | CDS | 30140266 | 30140361 | 30140266 | ID=Msa0984640-mRNA-1:cds;Parent=Msa0984640-mRNA-1 |
| chr6_4 | three_prime_UTR | 30139757 | 30140265 | 30139757 | ID=Msa0984640-mRNA-1:three_prime_utr;Parent=Msa0984640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
