Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987460 | XP_013452015.1 | 72.816 | 309 | 55 | 3 | 1 | 280 | 20 | 328 | 2.91e-158 | 454 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987460 | sp|Q94BZ5|HSFA5_ARATH | 55.217 | 230 | 94 | 2 | 4 | 224 | 24 | 253 | 2.33e-84 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987460 | A0A072UAD0 | 72.816 | 309 | 55 | 3 | 1 | 280 | 20 | 328 | 1.39e-158 | 454 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0987460 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987460 | MtrunA17_Chr6g0467041 | 72.816 | 309 | 55 | 3 | 1 | 280 | 20 | 328 | 2.68e-162 | 454 |
| Msa0987460 | MtrunA17_Chr8g0378061 | 76.259 | 278 | 23 | 2 | 4 | 238 | 23 | 300 | 9.00e-147 | 420 |
| Msa0987460 | MtrunA17_Chr8g0378061 | 86.364 | 44 | 6 | 0 | 238 | 281 | 414 | 457 | 2.89e-18 | 84.3 |
| Msa0987460 | MtrunA17_Chr2g0330821 | 54.196 | 286 | 110 | 6 | 2 | 279 | 78 | 350 | 3.79e-93 | 279 |
| Msa0987460 | MtrunA17_Chr2g0330841 | 53.361 | 238 | 61 | 4 | 45 | 238 | 29 | 260 | 2.44e-70 | 222 |
| Msa0987460 | MtrunA17_Chr5g0410881 | 50.237 | 211 | 91 | 4 | 3 | 199 | 32 | 242 | 1.30e-64 | 210 |
| Msa0987460 | MtrunA17_Chr8g0379701 | 48.020 | 202 | 95 | 3 | 1 | 197 | 10 | 206 | 1.78e-57 | 189 |
| Msa0987460 | MtrunA17_Chr4g0039891 | 44.498 | 209 | 104 | 3 | 1 | 197 | 10 | 218 | 1.59e-55 | 186 |
| Msa0987460 | MtrunA17_Chr1g0204741 | 45.320 | 203 | 99 | 5 | 3 | 196 | 40 | 239 | 1.61e-51 | 171 |
| Msa0987460 | MtrunA17_Chr3g0135831 | 43.284 | 201 | 108 | 3 | 3 | 198 | 46 | 245 | 1.05e-50 | 171 |
| Msa0987460 | MtrunA17_Chr7g0260331 | 45.854 | 205 | 99 | 5 | 3 | 196 | 49 | 252 | 1.29e-50 | 170 |
| Msa0987460 | MtrunA17_Chr1g0185131 | 40.724 | 221 | 111 | 4 | 3 | 214 | 32 | 241 | 1.92e-47 | 161 |
| Msa0987460 | MtrunA17_Chr4g0071051 | 43.716 | 183 | 99 | 2 | 3 | 184 | 101 | 280 | 5.18e-45 | 157 |
| Msa0987460 | MtrunA17_Chr8g0392001 | 47.692 | 195 | 89 | 6 | 1 | 182 | 20 | 214 | 6.20e-45 | 155 |
| Msa0987460 | MtrunA17_Chr3g0134031 | 70.968 | 93 | 27 | 0 | 2 | 94 | 23 | 115 | 9.98e-45 | 155 |
| Msa0987460 | MtrunA17_Chr5g0402291 | 63.725 | 102 | 37 | 0 | 2 | 103 | 8 | 109 | 1.33e-42 | 147 |
| Msa0987460 | MtrunA17_Chr6g0485571 | 41.176 | 204 | 113 | 2 | 1 | 200 | 9 | 209 | 1.36e-42 | 149 |
| Msa0987460 | MtrunA17_Chr5g0441531 | 67.742 | 93 | 30 | 0 | 2 | 94 | 24 | 116 | 5.15e-42 | 145 |
| Msa0987460 | MtrunA17_Chr5g0397881 | 65.217 | 92 | 32 | 0 | 3 | 94 | 24 | 115 | 2.63e-40 | 143 |
| Msa0987460 | MtrunA17_Chr2g0284481 | 60.000 | 100 | 40 | 0 | 1 | 100 | 13 | 112 | 7.49e-40 | 142 |
| Msa0987460 | MtrunA17_Chr7g0257331 | 59.574 | 94 | 38 | 0 | 2 | 95 | 21 | 114 | 1.32e-38 | 135 |
| Msa0987460 | MtrunA17_Chr6g0472421 | 63.441 | 93 | 34 | 0 | 2 | 94 | 32 | 124 | 1.59e-38 | 138 |
| Msa0987460 | MtrunA17_Chr1g0203601 | 61.053 | 95 | 37 | 0 | 2 | 96 | 17 | 111 | 9.69e-38 | 135 |
| Msa0987460 | MtrunA17_Chr4g0047421 | 56.701 | 97 | 38 | 1 | 2 | 94 | 32 | 128 | 2.51e-34 | 123 |
| Msa0987460 | MtrunA17_Chr8g0375041 | 56.989 | 93 | 40 | 0 | 2 | 94 | 8 | 100 | 7.27e-33 | 121 |
| Msa0987460 | MtrunA17_Chr1g0179321 | 64.516 | 62 | 22 | 0 | 1 | 62 | 47 | 108 | 6.35e-25 | 95.9 |
| Msa0987460 | MtrunA17_Chr4g0023771 | 65.517 | 58 | 20 | 0 | 3 | 60 | 15 | 72 | 3.63e-20 | 83.6 |
| Msa0987460 | MtrunA17_Chr1g0179311 | 29.016 | 193 | 114 | 6 | 42 | 224 | 1 | 180 | 8.36e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987460 | AT4G13980.1 | 55.217 | 230 | 94 | 2 | 4 | 224 | 24 | 253 | 2.37e-85 | 263 |
| Msa0987460 | AT4G17750.1 | 47.685 | 216 | 92 | 4 | 3 | 197 | 52 | 267 | 2.69e-59 | 196 |
| Msa0987460 | AT5G16820.1 | 48.341 | 211 | 94 | 5 | 1 | 197 | 25 | 234 | 9.21e-59 | 195 |
| Msa0987460 | AT5G16820.2 | 48.341 | 211 | 94 | 5 | 1 | 197 | 25 | 234 | 9.21e-59 | 195 |
| Msa0987460 | AT3G02990.1 | 44.796 | 221 | 109 | 4 | 1 | 209 | 21 | 240 | 3.64e-58 | 193 |
| Msa0987460 | AT1G32330.1 | 48.131 | 214 | 92 | 5 | 3 | 197 | 37 | 250 | 6.97e-58 | 192 |
| Msa0987460 | AT1G32330.2 | 48.131 | 214 | 92 | 5 | 3 | 197 | 37 | 250 | 7.51e-58 | 192 |
| Msa0987460 | AT5G45710.3 | 39.806 | 309 | 148 | 10 | 1 | 280 | 11 | 310 | 1.36e-54 | 180 |
| Msa0987460 | AT5G45710.1 | 39.806 | 309 | 148 | 10 | 1 | 280 | 11 | 310 | 1.36e-54 | 180 |
| Msa0987460 | AT4G18880.1 | 49.524 | 210 | 90 | 4 | 1 | 201 | 13 | 215 | 3.89e-53 | 178 |
| Msa0987460 | AT2G26150.1 | 42.009 | 219 | 119 | 3 | 3 | 213 | 44 | 262 | 4.67e-51 | 171 |
| Msa0987460 | AT2G26150.4 | 42.009 | 219 | 119 | 3 | 3 | 213 | 44 | 262 | 4.67e-51 | 171 |
| Msa0987460 | AT3G51910.1 | 41.706 | 211 | 106 | 5 | 3 | 207 | 29 | 228 | 7.77e-48 | 160 |
| Msa0987460 | AT3G22830.1 | 39.906 | 213 | 115 | 3 | 3 | 202 | 61 | 273 | 3.74e-47 | 162 |
| Msa0987460 | AT5G03720.2 | 43.137 | 204 | 104 | 4 | 1 | 194 | 53 | 254 | 2.00e-46 | 160 |
| Msa0987460 | AT5G03720.1 | 43.137 | 204 | 104 | 4 | 1 | 194 | 53 | 254 | 2.00e-46 | 160 |
| Msa0987460 | AT3G24520.1 | 46.243 | 173 | 73 | 3 | 1 | 172 | 15 | 168 | 1.89e-44 | 154 |
| Msa0987460 | AT1G67970.1 | 45.833 | 192 | 91 | 5 | 1 | 182 | 17 | 205 | 2.34e-44 | 154 |
| Msa0987460 | AT1G46264.1 | 61.607 | 112 | 33 | 1 | 2 | 103 | 33 | 144 | 2.82e-44 | 154 |
| Msa0987460 | AT5G43840.1 | 41.176 | 187 | 98 | 3 | 2 | 186 | 18 | 194 | 9.46e-42 | 145 |
| Msa0987460 | AT5G54070.1 | 42.623 | 183 | 99 | 2 | 1 | 182 | 69 | 246 | 3.93e-41 | 145 |
| Msa0987460 | AT3G63350.1 | 31.673 | 281 | 158 | 8 | 2 | 278 | 27 | 277 | 1.20e-39 | 140 |
| Msa0987460 | AT4G11660.1 | 64.516 | 93 | 33 | 0 | 2 | 94 | 58 | 150 | 1.64e-38 | 139 |
| Msa0987460 | AT2G41690.1 | 53.043 | 115 | 54 | 0 | 3 | 117 | 40 | 154 | 7.36e-38 | 134 |
| Msa0987460 | AT4G36990.1 | 60.000 | 95 | 38 | 0 | 2 | 96 | 13 | 107 | 9.76e-38 | 135 |
| Msa0987460 | AT5G62020.1 | 56.122 | 98 | 43 | 0 | 2 | 99 | 22 | 119 | 2.99e-36 | 131 |
| Msa0987460 | AT4G18870.1 | 47.727 | 88 | 46 | 0 | 3 | 90 | 146 | 233 | 5.16e-23 | 96.3 |
| Msa0987460 | AT4G18870.1 | 47.778 | 90 | 46 | 1 | 1 | 90 | 11 | 99 | 1.45e-21 | 92.0 |
| Msa0987460 | AT1G77570.1 | 43.678 | 87 | 46 | 2 | 4 | 87 | 27 | 113 | 3.67e-17 | 77.0 |
| Msa0987460 | AT2G26150.3 | 32.020 | 203 | 123 | 6 | 21 | 213 | 10 | 207 | 1.20e-16 | 78.6 |
| Msa0987460 | AT2G26150.2 | 32.020 | 203 | 123 | 6 | 21 | 213 | 10 | 207 | 1.20e-16 | 78.6 |
| Msa0987460 | AT5G45710.4 | 30.493 | 223 | 117 | 10 | 87 | 280 | 1 | 214 | 2.22e-13 | 68.6 |
| Msa0987460 | AT5G45710.2 | 30.493 | 223 | 117 | 10 | 87 | 280 | 1 | 214 | 2.22e-13 | 68.6 |
| Msa0987460 | AT4G19630.1 | 34.375 | 96 | 60 | 1 | 1 | 93 | 9 | 104 | 1.26e-12 | 64.3 |
Find 66 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCAATGCTACCCTTTC+TGG | 0.001333 | 6_4:-37899367 | None:intergenic |
| CTTCTTTGAGAAGGCTCTTC+AGG | 0.202772 | 6_4:+37899534 | Msa0987460:CDS |
| ATAATTATAGCTTAGGAGTT+TGG | 0.257010 | 6_4:-37899431 | None:intergenic |
| CAAAATCGAATCCATGGATT+TGG | 0.330894 | 6_4:+37899585 | Msa0987460:CDS |
| CCACAGATGAGATCATTTCT+TGG | 0.343190 | 6_4:+37897735 | Msa0987460:CDS |
| ACGGAGTGAATGATGTGTTT+TGG | 0.356521 | 6_4:+37899806 | Msa0987460:CDS |
| ATAACAAAAGCTTCATCGTT+TGG | 0.362747 | 6_4:+37897765 | Msa0987460:CDS |
| AGAAGAACGCGAGAGAATTC+AGG | 0.373908 | 6_4:-37897794 | None:intergenic |
| ACGTTACCTGAAGCCTCCTT+TGG | 0.398346 | 6_4:-37899760 | None:intergenic |
| TAAGAAAAGGCGATTGTCTC+AGG | 0.414889 | 6_4:+37899618 | Msa0987460:CDS |
| ACCAAGCTACCTTCGGCAAC+AGG | 0.417714 | 6_4:-37899655 | None:intergenic |
| AGCTTAGGAGTTTGGATTGA+AGG | 0.419735 | 6_4:-37899423 | None:intergenic |
| TTGCTGTGTTTGAAATATGT+TGG | 0.421946 | 6_4:-37897818 | None:intergenic |
| TGCTGTGTTTGAAATATGTT+GGG | 0.444516 | 6_4:-37897817 | None:intergenic |
| TATCAAGATAATTATAGCTT+AGG | 0.451761 | 6_4:-37899438 | None:intergenic |
| TGGAAACTTATAATAAGAAA+AGG | 0.461564 | 6_4:+37899605 | Msa0987460:CDS |
| CCACAGTCATAGTCATCCTC+CGG | 0.469987 | 6_4:+37899330 | Msa0987460:CDS |
| GCCGAGCAGCTGCTTCGACT+TGG | 0.471786 | 6_4:-37899783 | None:intergenic |
| GCCTGTTGCCGAAGGTAGCT+TGG | 0.473073 | 6_4:+37899654 | Msa0987460:CDS |
| GAAAGCAGATCCTGATCGTT+GGG | 0.475772 | 6_4:+37899237 | Msa0987460:CDS |
| TTGGCAAACTCCCAACGATC+AGG | 0.478885 | 6_4:-37899247 | None:intergenic |
| GCTTAGGAGTTTGGATTGAA+GGG | 0.480417 | 6_4:-37899422 | None:intergenic |
| GGAAGACTTTCAGCGGCGAT+TGG | 0.481635 | 6_4:+37899477 | Msa0987460:CDS |
| ATTATAAGTTTCCAAATCCA+TGG | 0.481800 | 6_4:-37899596 | None:intergenic |
| GCTGATCCAAAGGAGGCTTC+AGG | 0.482903 | 6_4:+37899754 | Msa0987460:CDS |
| GAAGCCTCCTTTGGATCAGC+GGG | 0.484852 | 6_4:-37899751 | None:intergenic |
| TTTGCAAAACTTCTTTGAGA+AGG | 0.487416 | 6_4:+37899525 | Msa0987460:CDS |
| TGATACAGAAAAGCTTCAGC+TGG | 0.497298 | 6_4:+37899456 | Msa0987460:CDS |
| GACTTTCAGCGGCGATTGGA+TGG | 0.501769 | 6_4:+37899481 | Msa0987460:CDS |
| ATTGAGCTGACGGATGAAGC+TGG | 0.506271 | 6_4:-37897846 | None:intergenic |
| TTCTCTCAGAATCTTTCTGA+AGG | 0.510971 | 6_4:+37899697 | Msa0987460:CDS |
| TTCCCGCAAAATCGAATCCA+TGG | 0.512391 | 6_4:+37899579 | Msa0987460:CDS |
| AGATCCAGAAAGGGTAGCAT+TGG | 0.524292 | 6_4:+37899363 | Msa0987460:CDS |
| AACTGACCCCGCTGATCCAA+AGG | 0.526560 | 6_4:+37899744 | Msa0987460:CDS |
| CTTTCTGAAGGAGAACTGAC+AGG | 0.534056 | 6_4:+37899709 | Msa0987460:CDS |
| GAGAGAAAACATTGCTAGGA+AGG | 0.540423 | 6_4:-37899681 | None:intergenic |
| AACAGCATGGACTTTCAGTA+AGG | 0.541453 | 6_4:-37899837 | None:intergenic |
| GGAAAGCAGATCCTGATCGT+TGG | 0.545857 | 6_4:+37899236 | Msa0987460:CDS |
| GTCGAAGCAGCTGCTCGGCA+CGG | 0.548207 | 6_4:+37899787 | Msa0987460:CDS |
| TCCAAGTCGAAGCAGCTGCT+CGG | 0.549998 | 6_4:+37899782 | Msa0987460:CDS |
| CCGGAGGATGACTATGACTG+TGG | 0.551542 | 6_4:-37899330 | None:intergenic |
| AAGGTCGACCAAGCTACCTT+CGG | 0.554405 | 6_4:-37899662 | None:intergenic |
| CACAGTCATAGTCATCCTCC+GGG | 0.559092 | 6_4:+37899331 | Msa0987460:CDS |
| AGAAATGATCTCATCTGTGG+TGG | 0.567159 | 6_4:-37897732 | None:intergenic |
| TTCTGCTGTAGATCCAGAAA+GGG | 0.569736 | 6_4:+37899354 | Msa0987460:CDS |
| TTCTGAGAGAAAACATTGCT+AGG | 0.570976 | 6_4:-37899685 | None:intergenic |
| GACTGTGGATAGGTTTCTTG+CGG | 0.574041 | 6_4:-37899315 | None:intergenic |
| TCAGCGGCGATTGGATGGCA+TGG | 0.578102 | 6_4:+37899486 | Msa0987460:CDS |
| GTTCTGCTGTAGATCCAGAA+AGG | 0.579439 | 6_4:+37899353 | Msa0987460:CDS |
| GATTGGATGGCATGGAGAAG+AGG | 0.590608 | 6_4:+37899494 | Msa0987460:CDS |
| TGAAGCCTCCTTTGGATCAG+CGG | 0.591974 | 6_4:-37899752 | None:intergenic |
| CACATGCAGCCTGTTGCCGA+AGG | 0.596050 | 6_4:+37899646 | Msa0987460:CDS |
| TTACATAGGTATTGAGCTGA+CGG | 0.598207 | 6_4:-37897856 | None:intergenic |
| TCTGGATCTACAGCAGAACC+CGG | 0.614712 | 6_4:-37899349 | None:intergenic |
| GGATGACTATGACTGTGGAT+AGG | 0.617132 | 6_4:-37899325 | None:intergenic |
| TCTTCATTGTCTGAACAGCA+TGG | 0.622573 | 6_4:-37899850 | None:intergenic |
| GAAATGATCTCATCTGTGGT+GGG | 0.624254 | 6_4:-37897731 | None:intergenic |
| AGAACGCGAGAGAATTCAGG+AGG | 0.628084 | 6_4:-37897791 | None:intergenic |
| ATGCTGTTCAGACAATGAAG+AGG | 0.637659 | 6_4:+37899852 | Msa0987460:CDS |
| TTCAGCTGGAAGACTTTCAG+CGG | 0.655725 | 6_4:+37899470 | Msa0987460:CDS |
| CCAAGAAATGATCTCATCTG+TGG | 0.658293 | 6_4:-37897735 | None:intergenic |
| TGACCCCGCTGATCCAAAGG+AGG | 0.662370 | 6_4:+37899747 | Msa0987460:CDS |
| GAACGCGAGAGAATTCAGGA+GGG | 0.662504 | 6_4:-37897790 | None:intergenic |
| TCTTCAAAAGACATATGACA+TGG | 0.672721 | 6_4:+37897700 | Msa0987460:CDS |
| AAGCCTCCTTTGGATCAGCG+GGG | 0.731334 | 6_4:-37899750 | None:intergenic |
| GGATCTACAGCAGAACCCGG+AGG | 0.744225 | 6_4:-37899346 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCTTGTAAAAATTTAA+TGG | + | chr6_4:37899078-37899097 | Msa0987460:intron | 10.0% |
| !!! | ATCTTTTATAAATTTTTCAT+TGG | - | chr6_4:37899269-37899288 | None:intergenic | 10.0% |
| !! | ATATTCTTGTAAAAATTTAA+TGG | + | chr6_4:37899078-37899097 | Msa0987460:intron | 10.0% |
| !!! | ATCTTTTATAAATTTTTCAT+TGG | - | chr6_4:37899269-37899288 | None:intergenic | 10.0% |
| !!! | TTATCATATTTATTTAGTTC+AGG | - | chr6_4:37898541-37898560 | None:intergenic | 15.0% |
| !!! | AAGTATGTTTTAATTTGTTA+TGG | + | chr6_4:37899181-37899200 | Msa0987460:intron | 15.0% |
| !!! | TTATCATATTTATTTAGTTC+AGG | - | chr6_4:37898541-37898560 | None:intergenic | 15.0% |
| !!! | AAGTATGTTTTAATTTGTTA+TGG | + | chr6_4:37899181-37899200 | Msa0987460:intron | 15.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | + | chr6_4:37897971-37897990 | Msa0987460:intron | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | + | chr6_4:37898077-37898096 | Msa0987460:intron | 20.0% |
| !! | ATTATTTCATTGAGTTTAGT+TGG | + | chr6_4:37898117-37898136 | Msa0987460:intron | 20.0% |
| !! | ATACTAAATTATGTCATTGT+CGG | - | chr6_4:37898271-37898290 | None:intergenic | 20.0% |
| !! | TTTAGTATAATCATATGTGT+CGG | + | chr6_4:37898283-37898302 | Msa0987460:intron | 20.0% |
| !!! | ACTATTTATCATGTTTCTAT+AGG | + | chr6_4:37898682-37898701 | Msa0987460:intron | 20.0% |
| !!! | CTATTTATCATGTTTCTATA+GGG | + | chr6_4:37898683-37898702 | Msa0987460:intron | 20.0% |
| !! | AGGTAATATTTGTATAACTA+TGG | - | chr6_4:37898770-37898789 | None:intergenic | 20.0% |
| !! | ATGTGAAAGATTTGAAAATA+AGG | - | chr6_4:37898790-37898809 | None:intergenic | 20.0% |
| !!! | TTATTTTCAAATCTTTCACA+TGG | + | chr6_4:37898789-37898808 | Msa0987460:intron | 20.0% |
| !! | ATGGGAAAATTTAACATTTA+GGG | - | chr6_4:37898837-37898856 | None:intergenic | 20.0% |
| !! | AATGGGAAAATTTAACATTT+AGG | - | chr6_4:37898838-37898857 | None:intergenic | 20.0% |
| !! | GGATTAAACAATAAAAATCA+GGG | - | chr6_4:37898876-37898895 | None:intergenic | 20.0% |
| !! | AGGATTAAACAATAAAAATC+AGG | - | chr6_4:37898877-37898896 | None:intergenic | 20.0% |
| !! | GTATTCTTGTAAAGATTTAA+TGG | + | chr6_4:37899100-37899119 | Msa0987460:intron | 20.0% |
| !!! | ATTTATGTGTGCTTTTTATT+AGG | + | chr6_4:37899207-37899226 | Msa0987460:intron | 20.0% |
| !!! | TTTATGTGTGCTTTTTATTA+GGG | + | chr6_4:37899208-37899227 | Msa0987460:intron | 20.0% |
| !! | TATCAAGATAATTATAGCTT+AGG | - | chr6_4:37899441-37899460 | None:intergenic | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | + | chr6_4:37899605-37899624 | Msa0987460:CDS | 20.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | + | chr6_4:37897971-37897990 | Msa0987460:intron | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | + | chr6_4:37898077-37898096 | Msa0987460:intron | 20.0% |
| !! | ATTATTTCATTGAGTTTAGT+TGG | + | chr6_4:37898117-37898136 | Msa0987460:intron | 20.0% |
| !! | ATACTAAATTATGTCATTGT+CGG | - | chr6_4:37898271-37898290 | None:intergenic | 20.0% |
| !! | TTTAGTATAATCATATGTGT+CGG | + | chr6_4:37898283-37898302 | Msa0987460:intron | 20.0% |
| !!! | ACTATTTATCATGTTTCTAT+AGG | + | chr6_4:37898682-37898701 | Msa0987460:intron | 20.0% |
| !!! | CTATTTATCATGTTTCTATA+GGG | + | chr6_4:37898683-37898702 | Msa0987460:intron | 20.0% |
| !! | AGGTAATATTTGTATAACTA+TGG | - | chr6_4:37898770-37898789 | None:intergenic | 20.0% |
| !! | ATGTGAAAGATTTGAAAATA+AGG | - | chr6_4:37898790-37898809 | None:intergenic | 20.0% |
| !!! | TTATTTTCAAATCTTTCACA+TGG | + | chr6_4:37898789-37898808 | Msa0987460:intron | 20.0% |
| !! | ATGGGAAAATTTAACATTTA+GGG | - | chr6_4:37898837-37898856 | None:intergenic | 20.0% |
| !! | AATGGGAAAATTTAACATTT+AGG | - | chr6_4:37898838-37898857 | None:intergenic | 20.0% |
| !! | GGATTAAACAATAAAAATCA+GGG | - | chr6_4:37898876-37898895 | None:intergenic | 20.0% |
| !! | AGGATTAAACAATAAAAATC+AGG | - | chr6_4:37898877-37898896 | None:intergenic | 20.0% |
| !! | GTATTCTTGTAAAGATTTAA+TGG | + | chr6_4:37899100-37899119 | Msa0987460:intron | 20.0% |
| !!! | ATTTATGTGTGCTTTTTATT+AGG | + | chr6_4:37899207-37899226 | Msa0987460:intron | 20.0% |
| !!! | TTTATGTGTGCTTTTTATTA+GGG | + | chr6_4:37899208-37899227 | Msa0987460:intron | 20.0% |
| !! | TATCAAGATAATTATAGCTT+AGG | - | chr6_4:37899441-37899460 | None:intergenic | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | + | chr6_4:37899605-37899624 | Msa0987460:CDS | 20.0% |
| !!! | TCATATGTCTTTTGAAGAAA+CGG | - | chr6_4:37897698-37897717 | None:intergenic | 25.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | + | chr6_4:37898094-37898113 | Msa0987460:intron | 25.0% |
| !!! | TGAGATATTATAGTCTTGTA+TGG | + | chr6_4:37898180-37898199 | Msa0987460:intron | 25.0% |
| !! | AAGAATATTTCTACAGCATT+TGG | + | chr6_4:37898434-37898453 | Msa0987460:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTCA+TGG | - | chr6_4:37898497-37898516 | None:intergenic | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | + | chr6_4:37898989-37899008 | Msa0987460:intron | 25.0% |
| ! | ATGGCAATGAAAAAAAACTA+AGG | + | chr6_4:37899008-37899027 | Msa0987460:intron | 25.0% |
| ! | AAATAAGTTTGCAGTTCTTA+TGG | + | chr6_4:37899133-37899152 | Msa0987460:intron | 25.0% |
| ! | ATAATTATAGCTTAGGAGTT+TGG | - | chr6_4:37899434-37899453 | None:intergenic | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | - | chr6_4:37899599-37899618 | None:intergenic | 25.0% |
| !!! | TCATATGTCTTTTGAAGAAA+CGG | - | chr6_4:37897698-37897717 | None:intergenic | 25.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | + | chr6_4:37898094-37898113 | Msa0987460:intron | 25.0% |
| !!! | TGAGATATTATAGTCTTGTA+TGG | + | chr6_4:37898180-37898199 | Msa0987460:intron | 25.0% |
| !! | AAGAATATTTCTACAGCATT+TGG | + | chr6_4:37898434-37898453 | Msa0987460:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTCA+TGG | - | chr6_4:37898497-37898516 | None:intergenic | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | + | chr6_4:37898989-37899008 | Msa0987460:intron | 25.0% |
| ! | ATGGCAATGAAAAAAAACTA+AGG | + | chr6_4:37899008-37899027 | Msa0987460:intron | 25.0% |
| ! | AAATAAGTTTGCAGTTCTTA+TGG | + | chr6_4:37899133-37899152 | Msa0987460:intron | 25.0% |
| ! | ATAATTATAGCTTAGGAGTT+TGG | - | chr6_4:37899434-37899453 | None:intergenic | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | - | chr6_4:37899599-37899618 | None:intergenic | 25.0% |
| TCTTCAAAAGACATATGACA+TGG | + | chr6_4:37897700-37897719 | Msa0987460:CDS | 30.0% | |
| ATAACAAAAGCTTCATCGTT+TGG | + | chr6_4:37897765-37897784 | Msa0987460:CDS | 30.0% | |
| ! | TGCTGTGTTTGAAATATGTT+GGG | - | chr6_4:37897820-37897839 | None:intergenic | 30.0% |
| ! | TTGCTGTGTTTGAAATATGT+TGG | - | chr6_4:37897821-37897840 | None:intergenic | 30.0% |
| ! | TAGCATGAATTGACTTACAT+AGG | - | chr6_4:37897873-37897892 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | + | chr6_4:37898005-37898024 | Msa0987460:intron | 30.0% | |
| AAATTAAGACATACGAAGCA+AGG | - | chr6_4:37898351-37898370 | None:intergenic | 30.0% | |
| ! | GCTTCGTATGTCTTAATTTT+CGG | + | chr6_4:37898352-37898371 | Msa0987460:intron | 30.0% |
| TCTGAATATCACACTATTTC+CGG | + | chr6_4:37898508-37898527 | Msa0987460:intron | 30.0% | |
| ! | ATTTAGTTCAGGAACTAAAC+CGG | - | chr6_4:37898530-37898549 | None:intergenic | 30.0% |
| ! | TTATCATGTTTCTATAGGGT+AGG | + | chr6_4:37898687-37898706 | Msa0987460:intron | 30.0% |
| ! | TATCATGTTTCTATAGGGTA+GGG | + | chr6_4:37898688-37898707 | Msa0987460:intron | 30.0% |
| ! | TGACTAACATGGGAAATTTT+GGG | - | chr6_4:37898736-37898755 | None:intergenic | 30.0% |
| ! | ATGACTAACATGGGAAATTT+TGG | - | chr6_4:37898737-37898756 | None:intergenic | 30.0% |
| AACAATAAAAATCAGGGTGT+TGG | - | chr6_4:37898870-37898889 | None:intergenic | 30.0% | |
| ATGACACACATAAAAACTTC+AGG | - | chr6_4:37899053-37899072 | None:intergenic | 30.0% | |
| !! | GTGCTTTTTATTAGGGATTT+CGG | + | chr6_4:37899215-37899234 | Msa0987460:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | + | chr6_4:37899285-37899304 | Msa0987460:CDS | 30.0% | |
| ! | TTTGCAAAACTTCTTTGAGA+AGG | + | chr6_4:37899525-37899544 | Msa0987460:CDS | 30.0% |
| TCTTCAAAAGACATATGACA+TGG | + | chr6_4:37897700-37897719 | Msa0987460:CDS | 30.0% | |
| ATAACAAAAGCTTCATCGTT+TGG | + | chr6_4:37897765-37897784 | Msa0987460:CDS | 30.0% | |
| ! | TGCTGTGTTTGAAATATGTT+GGG | - | chr6_4:37897820-37897839 | None:intergenic | 30.0% |
| ! | TTGCTGTGTTTGAAATATGT+TGG | - | chr6_4:37897821-37897840 | None:intergenic | 30.0% |
| ! | TAGCATGAATTGACTTACAT+AGG | - | chr6_4:37897873-37897892 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | + | chr6_4:37898005-37898024 | Msa0987460:intron | 30.0% | |
| AAATTAAGACATACGAAGCA+AGG | - | chr6_4:37898351-37898370 | None:intergenic | 30.0% | |
| ! | GCTTCGTATGTCTTAATTTT+CGG | + | chr6_4:37898352-37898371 | Msa0987460:intron | 30.0% |
| TCTGAATATCACACTATTTC+CGG | + | chr6_4:37898508-37898527 | Msa0987460:intron | 30.0% | |
| ! | ATTTAGTTCAGGAACTAAAC+CGG | - | chr6_4:37898530-37898549 | None:intergenic | 30.0% |
| ! | TTATCATGTTTCTATAGGGT+AGG | + | chr6_4:37898687-37898706 | Msa0987460:intron | 30.0% |
| ! | TATCATGTTTCTATAGGGTA+GGG | + | chr6_4:37898688-37898707 | Msa0987460:intron | 30.0% |
| ! | TGACTAACATGGGAAATTTT+GGG | - | chr6_4:37898736-37898755 | None:intergenic | 30.0% |
| ! | ATGACTAACATGGGAAATTT+TGG | - | chr6_4:37898737-37898756 | None:intergenic | 30.0% |
| AACAATAAAAATCAGGGTGT+TGG | - | chr6_4:37898870-37898889 | None:intergenic | 30.0% | |
| ATGACACACATAAAAACTTC+AGG | - | chr6_4:37899053-37899072 | None:intergenic | 30.0% | |
| !! | GTGCTTTTTATTAGGGATTT+CGG | + | chr6_4:37899215-37899234 | Msa0987460:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | + | chr6_4:37899285-37899304 | Msa0987460:CDS | 30.0% | |
| ! | TTTGCAAAACTTCTTTGAGA+AGG | + | chr6_4:37899525-37899544 | Msa0987460:CDS | 30.0% |
| !! | TTACATAGGTATTGAGCTGA+CGG | - | chr6_4:37897859-37897878 | None:intergenic | 35.0% |
| GACATGAGAATGTTGAAAGA+TGG | + | chr6_4:37898156-37898175 | Msa0987460:intron | 35.0% | |
| ! | ATAATCATATGTGTCGGTGT+CGG | + | chr6_4:37898289-37898308 | Msa0987460:intron | 35.0% |
| ! | GTATGTCTTAATTTTCGGTG+TGG | + | chr6_4:37898357-37898376 | Msa0987460:intron | 35.0% |
| TTTCTACAGCATTTGGATCT+TGG | + | chr6_4:37898441-37898460 | Msa0987460:intron | 35.0% | |
| TGACGCATTTCATATACTTC+AGG | - | chr6_4:37898570-37898589 | None:intergenic | 35.0% | |
| ! | GTAGGGACTAAATTTGAGAT+AGG | + | chr6_4:37898705-37898724 | Msa0987460:intron | 35.0% |
| AGACACATCATGACTAACAT+GGG | - | chr6_4:37898746-37898765 | None:intergenic | 35.0% | |
| AAAACTTCAGGAAGCAAATC+TGG | - | chr6_4:37899041-37899060 | None:intergenic | 35.0% | |
| ! | AATCCATGGATTCGATTTTG+CGG | - | chr6_4:37899585-37899604 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | + | chr6_4:37899585-37899604 | Msa0987460:CDS | 35.0% | |
| ! | TTCTGAGAGAAAACATTGCT+AGG | - | chr6_4:37899688-37899707 | None:intergenic | 35.0% |
| TTCTCTCAGAATCTTTCTGA+AGG | + | chr6_4:37899697-37899716 | Msa0987460:CDS | 35.0% | |
| !! | TTACATAGGTATTGAGCTGA+CGG | - | chr6_4:37897859-37897878 | None:intergenic | 35.0% |
| GACATGAGAATGTTGAAAGA+TGG | + | chr6_4:37898156-37898175 | Msa0987460:intron | 35.0% | |
| ! | ATAATCATATGTGTCGGTGT+CGG | + | chr6_4:37898289-37898308 | Msa0987460:intron | 35.0% |
| ! | GTATGTCTTAATTTTCGGTG+TGG | + | chr6_4:37898357-37898376 | Msa0987460:intron | 35.0% |
| TTTCTACAGCATTTGGATCT+TGG | + | chr6_4:37898441-37898460 | Msa0987460:intron | 35.0% | |
| TGACGCATTTCATATACTTC+AGG | - | chr6_4:37898570-37898589 | None:intergenic | 35.0% | |
| ! | GTAGGGACTAAATTTGAGAT+AGG | + | chr6_4:37898705-37898724 | Msa0987460:intron | 35.0% |
| AGACACATCATGACTAACAT+GGG | - | chr6_4:37898746-37898765 | None:intergenic | 35.0% | |
| AAAACTTCAGGAAGCAAATC+TGG | - | chr6_4:37899041-37899060 | None:intergenic | 35.0% | |
| ! | AATCCATGGATTCGATTTTG+CGG | - | chr6_4:37899585-37899604 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | + | chr6_4:37899585-37899604 | Msa0987460:CDS | 35.0% | |
| ! | TTCTGAGAGAAAACATTGCT+AGG | - | chr6_4:37899688-37899707 | None:intergenic | 35.0% |
| TTCTCTCAGAATCTTTCTGA+AGG | + | chr6_4:37899697-37899716 | Msa0987460:CDS | 35.0% | |
| GAAATGATCTCATCTGTGGT+GGG | - | chr6_4:37897734-37897753 | None:intergenic | 40.0% | |
| AGAAATGATCTCATCTGTGG+TGG | - | chr6_4:37897735-37897754 | None:intergenic | 40.0% | |
| CCAAGAAATGATCTCATCTG+TGG | - | chr6_4:37897738-37897757 | None:intergenic | 40.0% | |
| CCACAGATGAGATCATTTCT+TGG | + | chr6_4:37897735-37897754 | Msa0987460:CDS | 40.0% | |
| !! | TGTCTTAATTTTCGGTGTGG+AGG | + | chr6_4:37898360-37898379 | Msa0987460:intron | 40.0% |
| ! | TGTGAATTGGTGGGTGATTT+AGG | + | chr6_4:37898383-37898402 | Msa0987460:intron | 40.0% |
| CAGACACATCATGACTAACA+TGG | - | chr6_4:37898747-37898766 | None:intergenic | 40.0% | |
| TCTTTCACATGGCAAACCTA+TGG | + | chr6_4:37898800-37898819 | Msa0987460:intron | 40.0% | |
| CTTTCACATGGCAAACCTAT+GGG | + | chr6_4:37898801-37898820 | Msa0987460:intron | 40.0% | |
| !! | GGTGTTGGTATGCACTTAAT+GGG | - | chr6_4:37898855-37898874 | None:intergenic | 40.0% |
| CTACGATGTAGAAGAGAAGT+AGG | - | chr6_4:37898897-37898916 | None:intergenic | 40.0% | |
| TTCTGCTGTAGATCCAGAAA+GGG | + | chr6_4:37899354-37899373 | Msa0987460:CDS | 40.0% | |
| GCTTAGGAGTTTGGATTGAA+GGG | - | chr6_4:37899425-37899444 | None:intergenic | 40.0% | |
| AGCTTAGGAGTTTGGATTGA+AGG | - | chr6_4:37899426-37899445 | None:intergenic | 40.0% | |
| TGATACAGAAAAGCTTCAGC+TGG | + | chr6_4:37899456-37899475 | Msa0987460:CDS | 40.0% | |
| ! | ATCCATGGATTCGATTTTGC+GGG | - | chr6_4:37899584-37899603 | None:intergenic | 40.0% |
| TAAGAAAAGGCGATTGTCTC+AGG | + | chr6_4:37899618-37899637 | Msa0987460:CDS | 40.0% | |
| GAGAGAAAACATTGCTAGGA+AGG | - | chr6_4:37899684-37899703 | None:intergenic | 40.0% | |
| ! | ACGGAGTGAATGATGTGTTT+TGG | + | chr6_4:37899806-37899825 | Msa0987460:CDS | 40.0% |
| ! | CGGAGTGAATGATGTGTTTT+GGG | + | chr6_4:37899807-37899826 | Msa0987460:CDS | 40.0% |
| AACAGCATGGACTTTCAGTA+AGG | - | chr6_4:37899840-37899859 | None:intergenic | 40.0% | |
| TCTTCATTGTCTGAACAGCA+TGG | - | chr6_4:37899853-37899872 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | + | chr6_4:37899852-37899871 | Msa0987460:CDS | 40.0% | |
| GAAATGATCTCATCTGTGGT+GGG | - | chr6_4:37897734-37897753 | None:intergenic | 40.0% | |
| AGAAATGATCTCATCTGTGG+TGG | - | chr6_4:37897735-37897754 | None:intergenic | 40.0% | |
| CCAAGAAATGATCTCATCTG+TGG | - | chr6_4:37897738-37897757 | None:intergenic | 40.0% | |
| CCACAGATGAGATCATTTCT+TGG | + | chr6_4:37897735-37897754 | Msa0987460:CDS | 40.0% | |
| !! | TGTCTTAATTTTCGGTGTGG+AGG | + | chr6_4:37898360-37898379 | Msa0987460:intron | 40.0% |
| ! | TGTGAATTGGTGGGTGATTT+AGG | + | chr6_4:37898383-37898402 | Msa0987460:intron | 40.0% |
| CAGACACATCATGACTAACA+TGG | - | chr6_4:37898747-37898766 | None:intergenic | 40.0% | |
| TCTTTCACATGGCAAACCTA+TGG | + | chr6_4:37898800-37898819 | Msa0987460:intron | 40.0% | |
| CTTTCACATGGCAAACCTAT+GGG | + | chr6_4:37898801-37898820 | Msa0987460:intron | 40.0% | |
| !! | GGTGTTGGTATGCACTTAAT+GGG | - | chr6_4:37898855-37898874 | None:intergenic | 40.0% |
| CTACGATGTAGAAGAGAAGT+AGG | - | chr6_4:37898897-37898916 | None:intergenic | 40.0% | |
| TTCTGCTGTAGATCCAGAAA+GGG | + | chr6_4:37899354-37899373 | Msa0987460:CDS | 40.0% | |
| GCTTAGGAGTTTGGATTGAA+GGG | - | chr6_4:37899425-37899444 | None:intergenic | 40.0% | |
| AGCTTAGGAGTTTGGATTGA+AGG | - | chr6_4:37899426-37899445 | None:intergenic | 40.0% | |
| TGATACAGAAAAGCTTCAGC+TGG | + | chr6_4:37899456-37899475 | Msa0987460:CDS | 40.0% | |
| ! | ATCCATGGATTCGATTTTGC+GGG | - | chr6_4:37899584-37899603 | None:intergenic | 40.0% |
| TAAGAAAAGGCGATTGTCTC+AGG | + | chr6_4:37899618-37899637 | Msa0987460:CDS | 40.0% | |
| GAGAGAAAACATTGCTAGGA+AGG | - | chr6_4:37899684-37899703 | None:intergenic | 40.0% | |
| ! | ACGGAGTGAATGATGTGTTT+TGG | + | chr6_4:37899806-37899825 | Msa0987460:CDS | 40.0% |
| ! | CGGAGTGAATGATGTGTTTT+GGG | + | chr6_4:37899807-37899826 | Msa0987460:CDS | 40.0% |
| AACAGCATGGACTTTCAGTA+AGG | - | chr6_4:37899840-37899859 | None:intergenic | 40.0% | |
| TCTTCATTGTCTGAACAGCA+TGG | - | chr6_4:37899853-37899872 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | + | chr6_4:37899852-37899871 | Msa0987460:CDS | 40.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | - | chr6_4:37897797-37897816 | None:intergenic | 45.0% | |
| ! | TGGCAAACCTATGGGTGTTT+TGG | + | chr6_4:37898809-37898828 | Msa0987460:intron | 45.0% |
| TAGGGTTCCAAAACACCCAT+AGG | - | chr6_4:37898819-37898838 | None:intergenic | 45.0% | |
| !! | GGGTGTTGGTATGCACTTAA+TGG | - | chr6_4:37898856-37898875 | None:intergenic | 45.0% |
| CGTAGACATCTCAAGCATCT+AGG | + | chr6_4:37898912-37898931 | Msa0987460:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+TGG | - | chr6_4:37899038-37899057 | None:intergenic | 45.0% | |
| GAAAGCAGATCCTGATCGTT+GGG | + | chr6_4:37899237-37899256 | Msa0987460:CDS | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | - | chr6_4:37899318-37899337 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | - | chr6_4:37899328-37899347 | None:intergenic | 45.0% | |
| GTTCTGCTGTAGATCCAGAA+AGG | + | chr6_4:37899353-37899372 | Msa0987460:CDS | 45.0% | |
| AGATCCAGAAAGGGTAGCAT+TGG | + | chr6_4:37899363-37899382 | Msa0987460:CDS | 45.0% | |
| TTCTCCAATGCTACCCTTTC+TGG | - | chr6_4:37899370-37899389 | None:intergenic | 45.0% | |
| TTCAGCTGGAAGACTTTCAG+CGG | + | chr6_4:37899470-37899489 | Msa0987460:CDS | 45.0% | |
| ! | CTTCTTTGAGAAGGCTCTTC+AGG | + | chr6_4:37899534-37899553 | Msa0987460:CDS | 45.0% |
| TTCCCGCAAAATCGAATCCA+TGG | + | chr6_4:37899579-37899598 | Msa0987460:CDS | 45.0% | |
| ! | CTTTCTGAAGGAGAACTGAC+AGG | + | chr6_4:37899709-37899728 | Msa0987460:CDS | 45.0% |
| AGAAGAACGCGAGAGAATTC+AGG | - | chr6_4:37897797-37897816 | None:intergenic | 45.0% | |
| ! | TGGCAAACCTATGGGTGTTT+TGG | + | chr6_4:37898809-37898828 | Msa0987460:intron | 45.0% |
| TAGGGTTCCAAAACACCCAT+AGG | - | chr6_4:37898819-37898838 | None:intergenic | 45.0% | |
| !! | GGGTGTTGGTATGCACTTAA+TGG | - | chr6_4:37898856-37898875 | None:intergenic | 45.0% |
| CGTAGACATCTCAAGCATCT+AGG | + | chr6_4:37898912-37898931 | Msa0987460:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+TGG | - | chr6_4:37899038-37899057 | None:intergenic | 45.0% | |
| GAAAGCAGATCCTGATCGTT+GGG | + | chr6_4:37899237-37899256 | Msa0987460:CDS | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | - | chr6_4:37899318-37899337 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | - | chr6_4:37899328-37899347 | None:intergenic | 45.0% | |
| GTTCTGCTGTAGATCCAGAA+AGG | + | chr6_4:37899353-37899372 | Msa0987460:CDS | 45.0% | |
| AGATCCAGAAAGGGTAGCAT+TGG | + | chr6_4:37899363-37899382 | Msa0987460:CDS | 45.0% | |
| TTCTCCAATGCTACCCTTTC+TGG | - | chr6_4:37899370-37899389 | None:intergenic | 45.0% | |
| TTCAGCTGGAAGACTTTCAG+CGG | + | chr6_4:37899470-37899489 | Msa0987460:CDS | 45.0% | |
| ! | CTTCTTTGAGAAGGCTCTTC+AGG | + | chr6_4:37899534-37899553 | Msa0987460:CDS | 45.0% |
| TTCCCGCAAAATCGAATCCA+TGG | + | chr6_4:37899579-37899598 | Msa0987460:CDS | 45.0% | |
| ! | CTTTCTGAAGGAGAACTGAC+AGG | + | chr6_4:37899709-37899728 | Msa0987460:CDS | 45.0% |
| GAACGCGAGAGAATTCAGGA+GGG | - | chr6_4:37897793-37897812 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | - | chr6_4:37897794-37897813 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | - | chr6_4:37897849-37897868 | None:intergenic | 50.0% |
| TACGAAGCAAGGACACTCCT+CGG | - | chr6_4:37898340-37898359 | None:intergenic | 50.0% | |
| ! | TTCGGTGTGGAGGTGTGAAT+TGG | + | chr6_4:37898370-37898389 | Msa0987460:intron | 50.0% |
| ! | GTGTGGAGGTGTGAATTGGT+GGG | + | chr6_4:37898374-37898393 | Msa0987460:intron | 50.0% |
| CAGGAAGCAAATCTGGTGGT+GGG | - | chr6_4:37899034-37899053 | None:intergenic | 50.0% | |
| TCAGGAAGCAAATCTGGTGG+TGG | - | chr6_4:37899035-37899054 | None:intergenic | 50.0% | |
| GGAAAGCAGATCCTGATCGT+TGG | + | chr6_4:37899236-37899255 | Msa0987460:CDS | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | - | chr6_4:37899250-37899269 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | + | chr6_4:37899330-37899349 | Msa0987460:CDS | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | + | chr6_4:37899331-37899350 | Msa0987460:CDS | 50.0% | |
| TCTGGATCTACAGCAGAACC+CGG | - | chr6_4:37899352-37899371 | None:intergenic | 50.0% | |
| GATTGGATGGCATGGAGAAG+AGG | + | chr6_4:37899494-37899513 | Msa0987460:CDS | 50.0% | |
| AAGGTCGACCAAGCTACCTT+CGG | - | chr6_4:37899665-37899684 | None:intergenic | 50.0% | |
| TGAAGCCTCCTTTGGATCAG+CGG | - | chr6_4:37899755-37899774 | None:intergenic | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | - | chr6_4:37899763-37899782 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | - | chr6_4:37897793-37897812 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | - | chr6_4:37897794-37897813 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | - | chr6_4:37897849-37897868 | None:intergenic | 50.0% |
| TACGAAGCAAGGACACTCCT+CGG | - | chr6_4:37898340-37898359 | None:intergenic | 50.0% | |
| ! | TTCGGTGTGGAGGTGTGAAT+TGG | + | chr6_4:37898370-37898389 | Msa0987460:intron | 50.0% |
| ! | GTGTGGAGGTGTGAATTGGT+GGG | + | chr6_4:37898374-37898393 | Msa0987460:intron | 50.0% |
| CAGGAAGCAAATCTGGTGGT+GGG | - | chr6_4:37899034-37899053 | None:intergenic | 50.0% | |
| TCAGGAAGCAAATCTGGTGG+TGG | - | chr6_4:37899035-37899054 | None:intergenic | 50.0% | |
| GGAAAGCAGATCCTGATCGT+TGG | + | chr6_4:37899236-37899255 | Msa0987460:CDS | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | - | chr6_4:37899250-37899269 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | + | chr6_4:37899330-37899349 | Msa0987460:CDS | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | + | chr6_4:37899331-37899350 | Msa0987460:CDS | 50.0% | |
| TCTGGATCTACAGCAGAACC+CGG | - | chr6_4:37899352-37899371 | None:intergenic | 50.0% | |
| GATTGGATGGCATGGAGAAG+AGG | + | chr6_4:37899494-37899513 | Msa0987460:CDS | 50.0% | |
| AAGGTCGACCAAGCTACCTT+CGG | - | chr6_4:37899665-37899684 | None:intergenic | 50.0% | |
| TGAAGCCTCCTTTGGATCAG+CGG | - | chr6_4:37899755-37899774 | None:intergenic | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | - | chr6_4:37899763-37899782 | None:intergenic | 50.0% | |
| GATTAGGTGCGTCCTGGTGT+CGG | - | chr6_4:37898318-37898337 | None:intergenic | 55.0% | |
| GCAAGGACACTCCTCGGATT+AGG | - | chr6_4:37898334-37898353 | None:intergenic | 55.0% | |
| ! | GGTGTGGAGGTGTGAATTGG+TGG | + | chr6_4:37898373-37898392 | Msa0987460:intron | 55.0% |
| CCGGAGGATGACTATGACTG+TGG | - | chr6_4:37899333-37899352 | None:intergenic | 55.0% | |
| GGAAGACTTTCAGCGGCGAT+TGG | + | chr6_4:37899477-37899496 | Msa0987460:CDS | 55.0% | |
| GACTTTCAGCGGCGATTGGA+TGG | + | chr6_4:37899481-37899500 | Msa0987460:CDS | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | - | chr6_4:37899658-37899677 | None:intergenic | 55.0% | |
| AACTGACCCCGCTGATCCAA+AGG | + | chr6_4:37899744-37899763 | Msa0987460:CDS | 55.0% | |
| AAGCCTCCTTTGGATCAGCG+GGG | - | chr6_4:37899753-37899772 | None:intergenic | 55.0% | |
| GAAGCCTCCTTTGGATCAGC+GGG | - | chr6_4:37899754-37899773 | None:intergenic | 55.0% | |
| GCTGATCCAAAGGAGGCTTC+AGG | + | chr6_4:37899754-37899773 | Msa0987460:CDS | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | + | chr6_4:37899782-37899801 | Msa0987460:CDS | 55.0% | |
| GATTAGGTGCGTCCTGGTGT+CGG | - | chr6_4:37898318-37898337 | None:intergenic | 55.0% | |
| GCAAGGACACTCCTCGGATT+AGG | - | chr6_4:37898334-37898353 | None:intergenic | 55.0% | |
| ! | GGTGTGGAGGTGTGAATTGG+TGG | + | chr6_4:37898373-37898392 | Msa0987460:intron | 55.0% |
| CCGGAGGATGACTATGACTG+TGG | - | chr6_4:37899333-37899352 | None:intergenic | 55.0% | |
| GGAAGACTTTCAGCGGCGAT+TGG | + | chr6_4:37899477-37899496 | Msa0987460:CDS | 55.0% | |
| GACTTTCAGCGGCGATTGGA+TGG | + | chr6_4:37899481-37899500 | Msa0987460:CDS | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | - | chr6_4:37899658-37899677 | None:intergenic | 55.0% | |
| AACTGACCCCGCTGATCCAA+AGG | + | chr6_4:37899744-37899763 | Msa0987460:CDS | 55.0% | |
| AAGCCTCCTTTGGATCAGCG+GGG | - | chr6_4:37899753-37899772 | None:intergenic | 55.0% | |
| GAAGCCTCCTTTGGATCAGC+GGG | - | chr6_4:37899754-37899773 | None:intergenic | 55.0% | |
| GCTGATCCAAAGGAGGCTTC+AGG | + | chr6_4:37899754-37899773 | Msa0987460:CDS | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | + | chr6_4:37899782-37899801 | Msa0987460:CDS | 55.0% | |
| ACCAGGACGCACCTAATCCG+AGG | + | chr6_4:37898320-37898339 | Msa0987460:intron | 60.0% | |
| ! | TCCTCGGATTAGGTGCGTCC+TGG | - | chr6_4:37898324-37898343 | None:intergenic | 60.0% |
| GGATCTACAGCAGAACCCGG+AGG | - | chr6_4:37899349-37899368 | None:intergenic | 60.0% | |
| TCAGCGGCGATTGGATGGCA+TGG | + | chr6_4:37899486-37899505 | Msa0987460:CDS | 60.0% | |
| CACATGCAGCCTGTTGCCGA+AGG | + | chr6_4:37899646-37899665 | Msa0987460:CDS | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | + | chr6_4:37899654-37899673 | Msa0987460:CDS | 60.0% | |
| TGACCCCGCTGATCCAAAGG+AGG | + | chr6_4:37899747-37899766 | Msa0987460:CDS | 60.0% | |
| ACCAGGACGCACCTAATCCG+AGG | + | chr6_4:37898320-37898339 | Msa0987460:intron | 60.0% | |
| ! | TCCTCGGATTAGGTGCGTCC+TGG | - | chr6_4:37898324-37898343 | None:intergenic | 60.0% |
| GGATCTACAGCAGAACCCGG+AGG | - | chr6_4:37899349-37899368 | None:intergenic | 60.0% | |
| TCAGCGGCGATTGGATGGCA+TGG | + | chr6_4:37899486-37899505 | Msa0987460:CDS | 60.0% | |
| CACATGCAGCCTGTTGCCGA+AGG | + | chr6_4:37899646-37899665 | Msa0987460:CDS | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | + | chr6_4:37899654-37899673 | Msa0987460:CDS | 60.0% | |
| TGACCCCGCTGATCCAAAGG+AGG | + | chr6_4:37899747-37899766 | Msa0987460:CDS | 60.0% | |
| GCCGAGCAGCTGCTTCGACT+TGG | - | chr6_4:37899786-37899805 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+CGG | + | chr6_4:37899787-37899806 | Msa0987460:CDS | 65.0% | |
| GCCGAGCAGCTGCTTCGACT+TGG | - | chr6_4:37899786-37899805 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+CGG | + | chr6_4:37899787-37899806 | Msa0987460:CDS | 65.0% | |
| ! | CGGTGTCGGACACCGACACC+AGG | + | chr6_4:37898303-37898322 | Msa0987460:intron | 70.0% |
| ! | CGGTGTCGGACACCGACACC+AGG | + | chr6_4:37898303-37898322 | Msa0987460:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 37897689 | 37899888 | 37897689 | ID=Msa0987460;Name=Msa0987460 |
| chr6_4 | mRNA | 37897689 | 37899888 | 37897689 | ID=Msa0987460-mRNA-1;Parent=Msa0987460;Name=Msa0987460-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|281 |
| chr6_4 | exon | 37897689 | 37897874 | 37897689 | ID=Msa0987460-mRNA-1:exon:9407;Parent=Msa0987460-mRNA-1 |
| chr6_4 | exon | 37899229 | 37899888 | 37899229 | ID=Msa0987460-mRNA-1:exon:9408;Parent=Msa0987460-mRNA-1 |
| chr6_4 | CDS | 37897689 | 37897874 | 37897689 | ID=Msa0987460-mRNA-1:cds;Parent=Msa0987460-mRNA-1 |
| chr6_4 | CDS | 37899229 | 37899888 | 37899229 | ID=Msa0987460-mRNA-1:cds;Parent=Msa0987460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
