Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987690 | KEH26078.1 | 89.198 | 324 | 26 | 2 | 1 | 319 | 1 | 320 | 0.0 | 595 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987690 | sp|Q8L3W1|VRN1_ARATH | 24.620 | 329 | 195 | 11 | 15 | 294 | 6 | 330 | 1.42e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987690 | A0A072UAG2 | 89.198 | 324 | 26 | 2 | 1 | 319 | 1 | 320 | 0.0 | 595 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0987690 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987690 | MtrunA17_Chr6g0467351 | 87.500 | 232 | 23 | 2 | 1 | 227 | 1 | 231 | 3.73e-147 | 413 |
| Msa0987690 | MtrunA17_Chr4g0067431 | 64.194 | 310 | 94 | 3 | 1 | 296 | 1 | 307 | 6.91e-138 | 393 |
| Msa0987690 | MtrunA17_Chr1g0163221 | 54.054 | 370 | 97 | 8 | 1 | 319 | 1 | 348 | 5.64e-118 | 344 |
| Msa0987690 | MtrunA17_Chr1g0163061 | 52.399 | 271 | 72 | 3 | 1 | 214 | 1 | 271 | 1.43e-72 | 225 |
| Msa0987690 | MtrunA17_Chr6g0467361 | 93.421 | 76 | 5 | 0 | 221 | 296 | 7 | 82 | 3.37e-48 | 156 |
| Msa0987690 | MtrunA17_Chr7g0233561 | 32.237 | 304 | 171 | 12 | 13 | 295 | 16 | 305 | 1.48e-27 | 109 |
| Msa0987690 | MtrunA17_Chr3g0131891 | 31.469 | 286 | 171 | 9 | 13 | 286 | 17 | 289 | 7.36e-27 | 107 |
| Msa0987690 | MtrunA17_Chr1g0163251 | 29.091 | 275 | 169 | 9 | 20 | 286 | 10 | 266 | 8.30e-25 | 103 |
| Msa0987690 | MtrunA17_Chr1g0163071 | 28.866 | 291 | 169 | 9 | 31 | 294 | 2 | 281 | 1.34e-23 | 98.6 |
| Msa0987690 | MtrunA17_Chr1g0163181 | 27.758 | 281 | 180 | 8 | 19 | 286 | 9 | 279 | 1.04e-22 | 97.8 |
| Msa0987690 | MtrunA17_Chr8g0390841 | 25.753 | 299 | 175 | 10 | 13 | 284 | 37 | 315 | 4.59e-22 | 96.3 |
| Msa0987690 | MtrunA17_Chr1g0163131 | 26.689 | 296 | 185 | 9 | 9 | 286 | 12 | 293 | 1.17e-21 | 93.2 |
| Msa0987690 | MtrunA17_Chr1g0163231 | 26.403 | 303 | 167 | 11 | 15 | 295 | 9 | 277 | 2.83e-21 | 92.0 |
| Msa0987690 | MtrunA17_Chr3g0103181 | 28.912 | 294 | 152 | 10 | 13 | 286 | 10 | 266 | 3.51e-21 | 91.3 |
| Msa0987690 | MtrunA17_Chr1g0163261 | 27.273 | 286 | 169 | 10 | 15 | 286 | 9 | 269 | 6.70e-21 | 90.9 |
| Msa0987690 | MtrunA17_Chr3g0103171 | 26.792 | 265 | 169 | 10 | 30 | 286 | 5 | 252 | 1.86e-20 | 89.0 |
| Msa0987690 | MtrunA17_Chr1g0163201 | 26.437 | 261 | 177 | 6 | 30 | 284 | 18 | 269 | 4.08e-20 | 90.1 |
| Msa0987690 | MtrunA17_Chr1g0171611 | 24.912 | 285 | 161 | 8 | 15 | 286 | 9 | 253 | 2.13e-19 | 86.7 |
| Msa0987690 | MtrunA17_Chr7g0233571 | 39.344 | 122 | 66 | 3 | 13 | 129 | 8 | 126 | 2.83e-19 | 84.7 |
| Msa0987690 | MtrunA17_Chr7g0233521 | 26.523 | 279 | 167 | 9 | 31 | 295 | 2 | 256 | 1.20e-18 | 84.3 |
| Msa0987690 | MtrunA17_Chr3g0103151 | 45.161 | 93 | 48 | 2 | 13 | 105 | 10 | 99 | 1.35e-18 | 81.6 |
| Msa0987690 | MtrunA17_Chr1g0163101 | 32.121 | 165 | 93 | 6 | 12 | 168 | 14 | 167 | 1.59e-18 | 81.6 |
| Msa0987690 | MtrunA17_Chr1g0208771 | 23.264 | 288 | 199 | 7 | 19 | 291 | 1 | 281 | 1.67e-18 | 85.9 |
| Msa0987690 | MtrunA17_Chr7g0233541 | 26.667 | 285 | 176 | 12 | 31 | 295 | 2 | 273 | 1.56e-16 | 78.6 |
| Msa0987690 | MtrunA17_Chr7g0233531 | 27.178 | 287 | 155 | 9 | 31 | 295 | 2 | 256 | 3.69e-16 | 77.4 |
| Msa0987690 | MtrunA17_Chr1g0163081 | 32.877 | 146 | 80 | 6 | 31 | 171 | 6 | 138 | 7.90e-15 | 70.9 |
| Msa0987690 | MtrunA17_Chr3g0103191 | 27.132 | 258 | 140 | 10 | 13 | 253 | 10 | 236 | 1.88e-14 | 72.0 |
| Msa0987690 | MtrunA17_Chr6g0476181 | 44.048 | 84 | 38 | 4 | 31 | 109 | 2 | 81 | 2.19e-14 | 69.7 |
| Msa0987690 | MtrunA17_Chr1g0163121 | 43.590 | 78 | 40 | 3 | 29 | 106 | 9 | 82 | 1.34e-13 | 67.4 |
| Msa0987690 | MtrunA17_Chr5g0419201 | 36.449 | 107 | 66 | 2 | 1 | 106 | 1 | 106 | 3.40e-13 | 67.4 |
| Msa0987690 | MtrunA17_Chr5g0429931 | 26.296 | 270 | 151 | 10 | 30 | 294 | 10 | 236 | 3.74e-13 | 68.2 |
| Msa0987690 | MtrunA17_Chr1g0162161 | 43.421 | 76 | 39 | 3 | 31 | 106 | 4 | 75 | 3.81e-13 | 66.2 |
| Msa0987690 | MtrunA17_Chr3g0077411 | 24.555 | 281 | 170 | 10 | 12 | 286 | 259 | 503 | 5.53e-13 | 69.3 |
| Msa0987690 | MtrunA17_Chr3g0077461 | 31.788 | 151 | 84 | 4 | 14 | 159 | 236 | 372 | 6.76e-13 | 68.9 |
| Msa0987690 | MtrunA17_Chr1g0163141 | 43.590 | 78 | 40 | 3 | 29 | 106 | 9 | 82 | 1.35e-12 | 65.5 |
| Msa0987690 | MtrunA17_Chr1g0163191 | 33.333 | 114 | 68 | 3 | 20 | 128 | 10 | 120 | 3.94e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987690 | AT3G18990.2 | 24.620 | 329 | 195 | 11 | 15 | 294 | 6 | 330 | 1.43e-16 | 80.1 |
| Msa0987690 | AT3G18990.1 | 24.620 | 329 | 195 | 11 | 15 | 294 | 6 | 330 | 1.44e-16 | 79.7 |
| Msa0987690 | AT1G49475.1 | 38.261 | 115 | 64 | 3 | 15 | 124 | 34 | 146 | 4.94e-13 | 67.0 |
| Msa0987690 | AT4G31690.1 | 30.097 | 103 | 71 | 1 | 193 | 294 | 136 | 238 | 2.03e-11 | 63.9 |
| Msa0987690 | AT3G18960.1 | 31.373 | 102 | 64 | 2 | 15 | 111 | 30 | 130 | 2.07e-11 | 62.8 |
| Msa0987690 | AT3G18960.2 | 31.373 | 102 | 64 | 2 | 15 | 111 | 30 | 130 | 2.11e-11 | 62.8 |
Find 42 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCACAAGTTTCTCTTAA+AGG | 0.175780 | 6_4:-38823160 | None:intergenic |
| ACTTTCATTTGTGTCATATT+TGG | 0.209359 | 6_4:-38822971 | None:intergenic |
| GCTCACAATAATTTGAAATT+TGG | 0.213375 | 6_4:+38824173 | Msa0987690:CDS |
| CTCTCTCAATGTGTGTCTTC+TGG | 0.218908 | 6_4:-38823566 | None:intergenic |
| TGCCTCCACGCAAAACTTAT+TGG | 0.235307 | 6_4:-38822911 | None:intergenic |
| TTCTATCTTGATCAACAAAA+AGG | 0.293775 | 6_4:-38824079 | None:intergenic |
| CTTCATCATCACCTGGTAAA+AGG | 0.296364 | 6_4:+38823206 | Msa0987690:CDS |
| ACACATTGAGAGAGATCTTT+TGG | 0.323525 | 6_4:+38823575 | Msa0987690:CDS |
| CATCACAAGTTTCTCTTAAA+GGG | 0.327281 | 6_4:-38823159 | None:intergenic |
| TAGAACATGGAATGCTGATT+TGG | 0.353140 | 6_4:+38824097 | Msa0987690:CDS |
| TCTAATCGACCATCTTCAAT+AGG | 0.374130 | 6_4:-38824919 | None:intergenic |
| TTTGCGTGATTCACAACTTT+TGG | 0.378903 | 6_4:+38823066 | Msa0987690:CDS |
| TGTGTCTTCACAAATTCATT+TGG | 0.382410 | 6_4:-38824026 | None:intergenic |
| AAGCCAGTGATTATGATGTT+TGG | 0.402887 | 6_4:+38823005 | Msa0987690:CDS |
| TAACAAACCCAGTCACTCTA+AGG | 0.404015 | 6_4:+38822945 | Msa0987690:CDS |
| CTCTTTGATGTGATTGTACT+CGG | 0.404696 | 6_4:+38823112 | Msa0987690:CDS |
| CATCCTTCAAGAAGGAAAAC+TGG | 0.414285 | 6_4:+38822476 | Msa0987690:CDS |
| TTTGGAAGCCTTAGAGTGAC+TGG | 0.425843 | 6_4:-38822953 | None:intergenic |
| TGACACAAATGAAAGTTACT+TGG | 0.482529 | 6_4:+38822978 | Msa0987690:CDS |
| CATATGCACATGATGAAAGA+AGG | 0.522234 | 6_4:+38824047 | Msa0987690:CDS |
| AAACCAAACATCATAATCAC+TGG | 0.533630 | 6_4:-38823008 | None:intergenic |
| ATCTCCATCACCTTGTGTGA+AGG | 0.534503 | 6_4:+38823234 | Msa0987690:CDS |
| TAATAGTCATGATGATATCA+AGG | 0.538648 | 6_4:+38823470 | Msa0987690:CDS |
| GAAGGTGAAAATCAACCCTA+AGG | 0.560885 | 6_4:+38823264 | Msa0987690:CDS |
| AAACAATTTGCACTAACAAG+TGG | 0.561217 | 6_4:+38824134 | Msa0987690:CDS |
| GACACAAATGAAAGTTACTT+GGG | 0.564890 | 6_4:+38822979 | Msa0987690:CDS |
| TGATACTTGCCTATTGAAGA+TGG | 0.567074 | 6_4:+38824910 | Msa0987690:CDS |
| TTGTGTGAAGGTTTGTAAGA+AGG | 0.570655 | 6_4:+38823246 | Msa0987690:CDS |
| AATTTGCACTAACAAGTGGT+TGG | 0.572723 | 6_4:+38824138 | Msa0987690:CDS |
| CAAACCTTCACACAAGGTGA+TGG | 0.582575 | 6_4:-38823238 | None:intergenic |
| CATGCAAGCATCCTTCAAGA+AGG | 0.583347 | 6_4:+38822468 | Msa0987690:CDS |
| TTGGAAGCCTTAGAGTGACT+GGG | 0.587860 | 6_4:-38822952 | None:intergenic |
| AAGGATTGTTACTTCAAAGA+GGG | 0.588782 | 6_4:+38824887 | Msa0987690:CDS |
| CCTTTAAGAGAAACTTGTGA+TGG | 0.589265 | 6_4:+38823160 | Msa0987690:CDS |
| GAAGGATTGTTACTTCAAAG+AGG | 0.590696 | 6_4:+38824886 | Msa0987690:CDS |
| TTTGCGTGGAGGCATTGGCA+AGG | 0.601041 | 6_4:+38822920 | Msa0987690:CDS |
| TTGTTGATCAAGATAGAACA+TGG | 0.602629 | 6_4:+38824084 | Msa0987690:CDS |
| TTCTTACAAACCTTCACACA+AGG | 0.621821 | 6_4:-38823244 | None:intergenic |
| GGGTTGGCTAGAATTTGTGA+AGG | 0.624634 | 6_4:+38824868 | Msa0987690:intron |
| GAGGATCCTTCATCATCACC+TGG | 0.627758 | 6_4:+38823199 | Msa0987690:CDS |
| GAACTTGAACATCAGAACAA+TGG | 0.632266 | 6_4:+38822423 | Msa0987690:CDS |
| TGGTTCTTTGAAAGTTACTG+AGG | 0.635859 | 6_4:+38823180 | Msa0987690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATGAATTTAAGAATT+AGG | + | chr6_4:38822532-38822551 | Msa0987690:intron | 10.0% |
| !!! | AAAATACAATTATTTTGAAT+AGG | - | chr6_4:38822610-38822629 | None:intergenic | 10.0% |
| !!! | ATTTTTTTGTCTTATTTTTT+AGG | + | chr6_4:38823413-38823432 | Msa0987690:intron | 10.0% |
| !!! | TTTTTTTGTCTTATTTTTTA+GGG | + | chr6_4:38823414-38823433 | Msa0987690:intron | 10.0% |
| !!! | TGAAAATTTCTTAATTTTAA+AGG | + | chr6_4:38824276-38824295 | Msa0987690:intron | 10.0% |
| !! | TAAATTATATTGATAAGAAA+AGG | - | chr6_4:38824832-38824851 | None:intergenic | 10.0% |
| !!! | TTAGGAGTATAATAAAATAA+CGG | + | chr6_4:38822550-38822569 | Msa0987690:intron | 15.0% |
| !!! | AATTGTATTTTACACTTTTA+AGG | + | chr6_4:38822619-38822638 | Msa0987690:intron | 15.0% |
| !!! | ATTGTATTTTACACTTTTAA+GGG | + | chr6_4:38822620-38822639 | Msa0987690:intron | 15.0% |
| !! | ATATTAAATTTGATTGATTG+TGG | + | chr6_4:38822873-38822892 | Msa0987690:intron | 15.0% |
| !! | TATTAAATTTGATTGATTGT+GGG | + | chr6_4:38822874-38822893 | Msa0987690:intron | 15.0% |
| !!! | AGCAAAATTTCATAATTTTA+AGG | + | chr6_4:38823330-38823349 | Msa0987690:CDS | 15.0% |
| !!! | TTTTTTGTCTTATTTTTTAG+GGG | + | chr6_4:38823415-38823434 | Msa0987690:intron | 15.0% |
| !! | TAAAATCAATAATTCAAAAC+AGG | + | chr6_4:38823998-38824017 | Msa0987690:intron | 15.0% |
| !! | AAAAATCATAAAATCAACAA+TGG | - | chr6_4:38824490-38824509 | None:intergenic | 15.0% |
| !!! | CATGAATAATTTTGAAAAAG+TGG | - | chr6_4:38822452-38822471 | None:intergenic | 20.0% |
| !!! | ATTTTCAGAAAATTGAGAAA+TGG | - | chr6_4:38822764-38822783 | None:intergenic | 20.0% |
| !!! | AATTTTAAGGATATGAACAA+TGG | + | chr6_4:38823343-38823362 | Msa0987690:CDS | 20.0% |
| !! | TAGTAATAATTAACCCTAAA+GGG | + | chr6_4:38823625-38823644 | Msa0987690:intron | 20.0% |
| !!! | ATTCACGTCTATATTTTTAA+GGG | - | chr6_4:38823750-38823769 | None:intergenic | 20.0% |
| !!! | TATTCACGTCTATATTTTTA+AGG | - | chr6_4:38823751-38823770 | None:intergenic | 20.0% |
| !! | TTTCATTATCTATTCTTTCA+TGG | + | chr6_4:38823794-38823813 | Msa0987690:intron | 20.0% |
| !! | TTCATTATCTATTCTTTCAT+GGG | + | chr6_4:38823795-38823814 | Msa0987690:intron | 20.0% |
| !!! | TTATTAAAGTACCTAGATTA+TGG | + | chr6_4:38823894-38823913 | Msa0987690:intron | 20.0% |
| !!! | TTTTTAAAAGTTTCACATGA+AGG | + | chr6_4:38824668-38824687 | Msa0987690:intron | 20.0% |
| !! | AATTTCCTAATGTAGTTTAT+TGG | - | chr6_4:38824748-38824767 | None:intergenic | 20.0% |
| !!! | AGGAAATTCATTTTAGAAAA+TGG | + | chr6_4:38824760-38824779 | Msa0987690:intron | 20.0% |
| ! | GATTAATATGTGTGTCAAAT+TGG | - | chr6_4:38822650-38822669 | None:intergenic | 25.0% |
| ! | ACTTTCATTTGTGTCATATT+TGG | - | chr6_4:38822974-38822993 | None:intergenic | 25.0% |
| !! | TAGATTCTTTTTGATCCTTA+GGG | - | chr6_4:38823282-38823301 | None:intergenic | 25.0% |
| !! | TTAGATTCTTTTTGATCCTT+AGG | - | chr6_4:38823283-38823302 | None:intergenic | 25.0% |
| !! | TATGAAATTTTGCTTGAGAT+TGG | - | chr6_4:38823324-38823343 | None:intergenic | 25.0% |
| ! | TAATAGTCATGATGATATCA+AGG | + | chr6_4:38823470-38823489 | Msa0987690:CDS | 25.0% |
| ! | CTAGTAATAATTAACCCTAA+AGG | + | chr6_4:38823624-38823643 | Msa0987690:intron | 25.0% |
| !!! | TAAAATTTTAGGTCCCTTTA+GGG | - | chr6_4:38823641-38823660 | None:intergenic | 25.0% |
| !! | TAAAGGGACCTAAAATTTTA+GGG | + | chr6_4:38823641-38823660 | Msa0987690:intron | 25.0% |
| !!! | GTCTATATTCTTTAGGTTTT+TGG | - | chr6_4:38823669-38823688 | None:intergenic | 25.0% |
| ! | ATGTTTCGTCTATATTCTTT+AGG | - | chr6_4:38823676-38823695 | None:intergenic | 25.0% |
| !!! | TGATCACTGTTGAATTTTTT+AGG | + | chr6_4:38823705-38823724 | Msa0987690:intron | 25.0% |
| !!! | GATCACTGTTGAATTTTTTA+GGG | + | chr6_4:38823706-38823725 | Msa0987690:intron | 25.0% |
| !!! | ATCACTGTTGAATTTTTTAG+GGG | + | chr6_4:38823707-38823726 | Msa0987690:intron | 25.0% |
| ! | TCAATCGAATTATACCATAA+TGG | + | chr6_4:38823846-38823865 | Msa0987690:intron | 25.0% |
| ! | CAATCGAATTATACCATAAT+GGG | + | chr6_4:38823847-38823866 | Msa0987690:intron | 25.0% |
| ! | AATATAACAAAGTCCCATTA+TGG | - | chr6_4:38823863-38823882 | None:intergenic | 25.0% |
| ! | AGTTATGTATAGCATACTAA+TGG | + | chr6_4:38823944-38823963 | Msa0987690:intron | 25.0% |
| ! | TTCTATCTTGATCAACAAAA+AGG | - | chr6_4:38824082-38824101 | None:intergenic | 25.0% |
| !! | GCTCACAATAATTTGAAATT+TGG | + | chr6_4:38824173-38824192 | Msa0987690:CDS | 25.0% |
| !! | CAAAACTTTTGTACTCAATT+AGG | + | chr6_4:38824456-38824475 | Msa0987690:intron | 25.0% |
| !! | TTATGAGTCTTGTATATAGA+CGG | - | chr6_4:38824525-38824544 | None:intergenic | 25.0% |
| ! | AATTATATTCCAAAATCGCA+AGG | - | chr6_4:38824797-38824816 | None:intergenic | 25.0% |
| TTCAAAACACACAAAAGACA+TGG | - | chr6_4:38822675-38822694 | None:intergenic | 30.0% | |
| TGACACAAATGAAAGTTACT+TGG | + | chr6_4:38822978-38822997 | Msa0987690:CDS | 30.0% | |
| GACACAAATGAAAGTTACTT+GGG | + | chr6_4:38822979-38822998 | Msa0987690:CDS | 30.0% | |
| AAACCAAACATCATAATCAC+TGG | - | chr6_4:38823011-38823030 | None:intergenic | 30.0% | |
| !!! | TATGATGTTTGGTTTTGCAA+TGG | + | chr6_4:38823016-38823035 | Msa0987690:CDS | 30.0% |
| CATCACAAGTTTCTCTTAAA+GGG | - | chr6_4:38823162-38823181 | None:intergenic | 30.0% | |
| TTAAGGATATGAACAATGGT+TGG | + | chr6_4:38823347-38823366 | Msa0987690:intron | 30.0% | |
| !! | CTAAAATTTTAGGTCCCTTT+AGG | - | chr6_4:38823642-38823661 | None:intergenic | 30.0% |
| ! | CTAAAGGGACCTAAAATTTT+AGG | + | chr6_4:38823640-38823659 | Msa0987690:intron | 30.0% |
| ! | AAAGGGACCTAAAATTTTAG+GGG | + | chr6_4:38823642-38823661 | Msa0987690:intron | 30.0% |
| ! | TTTTGGTCCCCTAAAATTTT+AGG | - | chr6_4:38823652-38823671 | None:intergenic | 30.0% |
| !!! | TCACTGTTGAATTTTTTAGG+GGG | + | chr6_4:38823708-38823727 | Msa0987690:intron | 30.0% |
| CCAATCAAAATCCATAATCT+AGG | - | chr6_4:38823908-38823927 | None:intergenic | 30.0% | |
| !! | CCTAGATTATGGATTTTGAT+TGG | + | chr6_4:38823905-38823924 | Msa0987690:intron | 30.0% |
| TGTGTCTTCACAAATTCATT+TGG | - | chr6_4:38824029-38824048 | None:intergenic | 30.0% | |
| TTGTTGATCAAGATAGAACA+TGG | + | chr6_4:38824084-38824103 | Msa0987690:CDS | 30.0% | |
| AAACAATTTGCACTAACAAG+TGG | + | chr6_4:38824134-38824153 | Msa0987690:CDS | 30.0% | |
| ! | AACTTTTGTACTCAATTAGG+TGG | + | chr6_4:38824459-38824478 | Msa0987690:intron | 30.0% |
| TCGATAAAAAGATGCTTGAT+AGG | - | chr6_4:38824600-38824619 | None:intergenic | 30.0% | |
| GTCTACCAATAAACTACATT+AGG | + | chr6_4:38824740-38824759 | Msa0987690:intron | 30.0% | |
| ! | AAGGATTGTTACTTCAAAGA+GGG | + | chr6_4:38824887-38824906 | Msa0987690:CDS | 30.0% |
| GAACTTGAACATCAGAACAA+TGG | + | chr6_4:38822423-38822442 | Msa0987690:CDS | 35.0% | |
| ! | TTACCAGTTTTCCTTCTTGA+AGG | - | chr6_4:38822482-38822501 | None:intergenic | 35.0% |
| AAGCCAGTGATTATGATGTT+TGG | + | chr6_4:38823005-38823024 | Msa0987690:CDS | 35.0% | |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | + | chr6_4:38823020-38823039 | Msa0987690:CDS | 35.0% |
| ! | TTTGCGTGATTCACAACTTT+TGG | + | chr6_4:38823066-38823085 | Msa0987690:CDS | 35.0% |
| CTCTTTGATGTGATTGTACT+CGG | + | chr6_4:38823112-38823131 | Msa0987690:CDS | 35.0% | |
| CCATCACAAGTTTCTCTTAA+AGG | - | chr6_4:38823163-38823182 | None:intergenic | 35.0% | |
| ! | CCTTTAAGAGAAACTTGTGA+TGG | + | chr6_4:38823160-38823179 | Msa0987690:CDS | 35.0% |
| ! | TGGTTCTTTGAAAGTTACTG+AGG | + | chr6_4:38823180-38823199 | Msa0987690:CDS | 35.0% |
| TTCTTACAAACCTTCACACA+AGG | - | chr6_4:38823247-38823266 | None:intergenic | 35.0% | |
| TTGTGTGAAGGTTTGTAAGA+AGG | + | chr6_4:38823246-38823265 | Msa0987690:CDS | 35.0% | |
| !!! | TTCGTGCTTAGCTTTTTTTG+TGG | + | chr6_4:38823438-38823457 | Msa0987690:intron | 35.0% |
| ATGCAAAAAAGTCCTTGTCA+TGG | - | chr6_4:38823539-38823558 | None:intergenic | 35.0% | |
| ! | ACACATTGAGAGAGATCTTT+TGG | + | chr6_4:38823575-38823594 | Msa0987690:CDS | 35.0% |
| CATATGCACATGATGAAAGA+AGG | + | chr6_4:38824047-38824066 | Msa0987690:CDS | 35.0% | |
| ! | TAGAACATGGAATGCTGATT+TGG | + | chr6_4:38824097-38824116 | Msa0987690:CDS | 35.0% |
| AATTTGCACTAACAAGTGGT+TGG | + | chr6_4:38824138-38824157 | Msa0987690:CDS | 35.0% | |
| !!! | TGCTATTTTCTCTCTTGAAG+AGG | + | chr6_4:38824250-38824269 | Msa0987690:intron | 35.0% |
| ! | AAATTGTGACCTTGCGATTT+TGG | + | chr6_4:38824785-38824804 | Msa0987690:intron | 35.0% |
| ATTTATGTGTGAACTCTCTC+AGG | + | chr6_4:38824847-38824866 | Msa0987690:intron | 35.0% | |
| TTTATGTGTGAACTCTCTCA+GGG | + | chr6_4:38824848-38824867 | Msa0987690:intron | 35.0% | |
| ! | GAAGGATTGTTACTTCAAAG+AGG | + | chr6_4:38824886-38824905 | Msa0987690:CDS | 35.0% |
| TGATACTTGCCTATTGAAGA+TGG | + | chr6_4:38824910-38824929 | Msa0987690:CDS | 35.0% | |
| CATCCTTCAAGAAGGAAAAC+TGG | + | chr6_4:38822476-38822495 | Msa0987690:CDS | 40.0% | |
| ! | AAGTGCCAATAAGTTTTGCG+TGG | + | chr6_4:38822906-38822925 | Msa0987690:CDS | 40.0% |
| TAACAAACCCAGTCACTCTA+AGG | + | chr6_4:38822945-38822964 | Msa0987690:CDS | 40.0% | |
| GTGATTGTACTCGGTAAATG+CGG | + | chr6_4:38823121-38823140 | Msa0987690:intron | 40.0% | |
| !! | CTTTTACCAGGTGATGATGA+AGG | - | chr6_4:38823208-38823227 | None:intergenic | 40.0% |
| CTTCATCATCACCTGGTAAA+AGG | + | chr6_4:38823206-38823225 | Msa0987690:CDS | 40.0% | |
| !! | GGAGATTTTAGCCTTTTACC+AGG | - | chr6_4:38823220-38823239 | None:intergenic | 40.0% |
| GAAGGTGAAAATCAACCCTA+AGG | + | chr6_4:38823264-38823283 | Msa0987690:CDS | 40.0% | |
| !!! | AGCTTTTTTTGTGGTGTAGC+AGG | + | chr6_4:38823447-38823466 | Msa0987690:intron | 40.0% |
| CGAAAAATTCAGCCATGACA+AGG | + | chr6_4:38823524-38823543 | Msa0987690:CDS | 40.0% | |
| ! | GCTGAAGTACTCGATTAAAG+CGG | - | chr6_4:38824578-38824597 | None:intergenic | 40.0% |
| CATGCAAGCATCCTTCAAGA+AGG | + | chr6_4:38822468-38822487 | Msa0987690:CDS | 45.0% | |
| ! | TGCCAATAAGTTTTGCGTGG+AGG | + | chr6_4:38822909-38822928 | Msa0987690:CDS | 45.0% |
| TGCCTCCACGCAAAACTTAT+TGG | - | chr6_4:38822914-38822933 | None:intergenic | 45.0% | |
| !! | TAAGTTTTGCGTGGAGGCAT+TGG | + | chr6_4:38822915-38822934 | Msa0987690:CDS | 45.0% |
| TTGGAAGCCTTAGAGTGACT+GGG | - | chr6_4:38822955-38822974 | None:intergenic | 45.0% | |
| TTTGGAAGCCTTAGAGTGAC+TGG | - | chr6_4:38822956-38822975 | None:intergenic | 45.0% | |
| ATCTCCATCACCTTGTGTGA+AGG | + | chr6_4:38823234-38823253 | Msa0987690:CDS | 45.0% | |
| CAAACCTTCACACAAGGTGA+TGG | - | chr6_4:38823241-38823260 | None:intergenic | 45.0% | |
| CTCTCTCAATGTGTGTCTTC+TGG | - | chr6_4:38823569-38823588 | None:intergenic | 45.0% | |
| GTCGTACAAAGAGTCTAGAG+AGG | - | chr6_4:38824396-38824415 | None:intergenic | 45.0% | |
| !! | GGGTTGGCTAGAATTTGTGA+AGG | + | chr6_4:38824868-38824887 | Msa0987690:intron | 45.0% |
| GAGGATCCTTCATCATCACC+TGG | + | chr6_4:38823199-38823218 | Msa0987690:CDS | 50.0% | |
| TGTGTGAACTCTCTCAGGGT+TGG | + | chr6_4:38824852-38824871 | Msa0987690:intron | 50.0% | |
| !! | TTTGCGTGGAGGCATTGGCA+AGG | + | chr6_4:38822920-38822939 | Msa0987690:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 38822411 | 38824940 | 38822411 | ID=Msa0987690;Name=Msa0987690 |
| chr6_4 | mRNA | 38822411 | 38824940 | 38822411 | ID=Msa0987690-mRNA-1;Parent=Msa0987690;Name=Msa0987690-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|0.4|0.33|6|0|319 |
| chr6_4 | exon | 38822411 | 38822497 | 38822411 | ID=Msa0987690-mRNA-1:exon:9589;Parent=Msa0987690-mRNA-1 |
| chr6_4 | exon | 38822905 | 38823133 | 38822905 | ID=Msa0987690-mRNA-1:exon:9590;Parent=Msa0987690-mRNA-1 |
| chr6_4 | exon | 38823149 | 38823364 | 38823149 | ID=Msa0987690-mRNA-1:exon:9591;Parent=Msa0987690-mRNA-1 |
| chr6_4 | exon | 38823469 | 38823596 | 38823469 | ID=Msa0987690-mRNA-1:exon:9592;Parent=Msa0987690-mRNA-1 |
| chr6_4 | exon | 38824020 | 38824247 | 38824020 | ID=Msa0987690-mRNA-1:exon:9593;Parent=Msa0987690-mRNA-1 |
| chr6_4 | exon | 38824869 | 38824940 | 38824869 | ID=Msa0987690-mRNA-1:exon:9594;Parent=Msa0987690-mRNA-1 |
| chr6_4 | CDS | 38822411 | 38822497 | 38822411 | ID=Msa0987690-mRNA-1:cds;Parent=Msa0987690-mRNA-1 |
| chr6_4 | CDS | 38822905 | 38823133 | 38822905 | ID=Msa0987690-mRNA-1:cds;Parent=Msa0987690-mRNA-1 |
| chr6_4 | CDS | 38823149 | 38823364 | 38823149 | ID=Msa0987690-mRNA-1:cds;Parent=Msa0987690-mRNA-1 |
| chr6_4 | CDS | 38823469 | 38823596 | 38823469 | ID=Msa0987690-mRNA-1:cds;Parent=Msa0987690-mRNA-1 |
| chr6_4 | CDS | 38824020 | 38824247 | 38824020 | ID=Msa0987690-mRNA-1:cds;Parent=Msa0987690-mRNA-1 |
| chr6_4 | CDS | 38824869 | 38824940 | 38824869 | ID=Msa0987690-mRNA-1:cds;Parent=Msa0987690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
