AlfalfaGEDB | Msa0988710

M. sativa cultivar zhongmu-4 / Msa0988710

KEGG: K07198
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007584 GO:0008150 GO:0008152 GO:0009593 GO:0009594 GO:0009605 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009756 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010050 GO:0010150 GO:0010182 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071704 GO:0080022 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0988710	XP_013452210.2	98.633	512	7	0	1	512	1	512	0.0	1050

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0988710	sp\|Q38997\|KIN10_ARATH	82.205	517	82	8	1	512	1	512	0.0	860

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0988710	A0A396HDX8	98.633	512	7	0	1	512	1	512	0.0	1050

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0988710	MtrunA17_Chr6g0468751	98.633	512	7	0	1	512	1	512	0.0	1050
Msa0988710	MtrunA17_Chr6g0453681	94.727	512	14	1	1	512	1	499	0.0	997
Msa0988710	MtrunA17_Chr3g0132671	73.222	478	95	2	1	448	1	475	0.0	721
Msa0988710	MtrunA17_Chr6g0453671	67.354	291	94	1	1	290	1	291	1.21e-140	410
Msa0988710	MtrunA17_Chr8g0346071	48.819	254	129	1	19	271	17	270	5.22e-86	272
Msa0988710	MtrunA17_Chr5g0428031	50.394	254	125	1	19	271	9	262	1.93e-85	271
Msa0988710	MtrunA17_Chr5g0441011	50.391	256	124	1	19	271	13	268	2.54e-85	270
Msa0988710	MtrunA17_Chr4g0063881	47.451	255	133	1	18	271	10	264	1.82e-84	268
Msa0988710	MtrunA17_Chr8g0346081	48.819	254	129	1	19	271	17	270	3.26e-84	267
Msa0988710	MtrunA17_Chr2g0304111	47.445	274	138	2	4	271	5	278	2.51e-83	266

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0988710	AT3G01090.2	82.205	517	82	8	1	512	24	535	0.0	862
Msa0988710	AT3G01090.3	82.205	517	82	8	1	512	1	512	0.0	860
Msa0988710	AT3G01090.1	82.205	517	82	8	1	512	1	512	0.0	860
Msa0988710	AT3G29160.1	75.922	515	118	4	1	512	1	512	0.0	797
Msa0988710	AT3G29160.2	75.922	515	118	4	1	512	1	512	0.0	797
Msa0988710	AT5G39440.1	62.718	515	168	5	1	512	1	494	0.0	643
Msa0988710	AT3G29160.3	84.571	350	53	1	1	349	1	350	0.0	615
Msa0988710	AT4G24400.2	51.765	255	122	1	19	272	9	263	1.95e-90	283
Msa0988710	AT5G21326.1	52.529	257	117	2	19	271	13	268	5.41e-90	283
Msa0988710	AT2G26980.1	51.953	256	120	1	19	271	14	269	8.61e-90	280

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Find 167 sgRNAs with CRISPR-Local

Find 506 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGGCCCTTGGACTTC+AGG	0.312446	6_4:+43160810	Msa0988710:CDS
AAACTCAGCTCCAAGATAGC+CGG	0.581044	6_4:-43160320	None:intergenic
AAACTTCGCAATAATGTCAT+GGG	0.545623	6_4:-43162455	None:intergenic
AAAGATAGTGCACACACATG+GGG	0.620790	6_4:+43162116	Msa0988710:three_prime_UTR
AAAGATCCAAGAAAAGAAAC+TGG	0.384531	6_4:-43162055	None:intergenic
AAATAGTCAGTTGCAACATT+AGG	0.327523	6_4:-43162351	None:intergenic
AAATCCCCTATCAGAATTGG+TGG	0.526311	6_4:+43162169	Msa0988710:three_prime_UTR
AACATGGACATGGAAGAAAA+AGG	0.425723	6_4:+43157965	Msa0988710:CDS
AACCCCAACCGACATTTATG+TGG	0.563208	6_4:+43158310	Msa0988710:CDS
AACCGACATTTATGTGGTGA+TGG	0.584552	6_4:+43158316	Msa0988710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAATTGAAGAAGATCCAA+GGG	-	chr6_4:43155904-43155923	None:intergenic	30.0%
AATGAATTGAAGAAGATCCA+AGG	-	chr6_4:43155905-43155924	None:intergenic	30.0%
TATTCAATGTACCTAGAAAG+TGG	-	chr6_4:43156181-43156200	None:intergenic	30.0%
CTGATTTAAACTCTTAACGA+AGG	-	chr6_4:43156322-43156341	None:intergenic	30.0%
TTACACCACAATAACAACAA+GGG	-	chr6_4:43156364-43156383	None:intergenic	30.0%
TTTACACCACAATAACAACA+AGG	-	chr6_4:43156365-43156384	None:intergenic	30.0%
GTTATTGTGGTGTAAAGAAA+TGG	+	chr6_4:43156369-43156388	Msa0988710:intron	30.0%
TCTCCGGTTCTTTAAATAAA+TGG	+	chr6_4:43156611-43156630	Msa0988710:intron	30.0%
CTCCGGTTCTTTAAATAAAT+GGG	+	chr6_4:43156612-43156631	Msa0988710:intron	30.0%
TCCGGTTCTTTAAATAAATG+GGG	+	chr6_4:43156613-43156632	Msa0988710:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	43155724	43162474	43155724	ID=Msa0988710;Name=Msa0988710
chr6_4	mRNA	43155724	43162474	43155724	ID=Msa0988710-mRNA-1;Parent=Msa0988710;Name=Msa0988710-mRNA-1;_AED=0.15;_eAED=0.15;_QI=118\|1\|1\|1\|0.9\|0.81\|11\|362\|512
chr6_4	exon	43155724	43155832	43155724	ID=Msa0988710-mRNA-1:exon:10031;Parent=Msa0988710-mRNA-1
chr6_4	exon	43157788	43157986	43157788	ID=Msa0988710-mRNA-1:exon:10032;Parent=Msa0988710-mRNA-1
chr6_4	exon	43158240	43158424	43158240	ID=Msa0988710-mRNA-1:exon:10033;Parent=Msa0988710-mRNA-1
chr6_4	exon	43158504	43158686	43158504	ID=Msa0988710-mRNA-1:exon:10034;Parent=Msa0988710-mRNA-1
chr6_4	exon	43158775	43158906	43158775	ID=Msa0988710-mRNA-1:exon:10035;Parent=Msa0988710-mRNA-1
chr6_4	exon	43159718	43159903	43159718	ID=Msa0988710-mRNA-1:exon:10036;Parent=Msa0988710-mRNA-1
chr6_4	exon	43160110	43160199	43160110	ID=Msa0988710-mRNA-1:exon:10037;Parent=Msa0988710-mRNA-1
chr6_4	exon	43160271	43160354	43160271	ID=Msa0988710-mRNA-1:exon:10038;Parent=Msa0988710-mRNA-1
chr6_4	exon	43160691	43160831	43160691	ID=Msa0988710-mRNA-1:exon:10039;Parent=Msa0988710-mRNA-1
chr6_4	exon	43161075	43161311	43161075	ID=Msa0988710-mRNA-1:exon:10040;Parent=Msa0988710-mRNA-1
chr6_4	exon	43162002	43162474	43162002	ID=Msa0988710-mRNA-1:exon:10041;Parent=Msa0988710-mRNA-1
chr6_4	five_prime_UTR	43155724	43155832	43155724	ID=Msa0988710-mRNA-1:five_prime_utr;Parent=Msa0988710-mRNA-1
chr6_4	five_prime_UTR	43157788	43157796	43157788	ID=Msa0988710-mRNA-1:five_prime_utr;Parent=Msa0988710-mRNA-1
chr6_4	CDS	43157797	43157986	43157797	ID=Msa0988710-mRNA-1:cds;Parent=Msa0988710-mRNA-1
chr6_4	CDS	43158240	43158424	43158240	ID=Msa0988710-mRNA-1:cds;Parent=Msa0988710-mRNA-1
chr6_4	CDS	43158504	43158686	43158504	ID=Msa0988710-mRNA-1:cds;Parent=Msa0988710-mRNA-1
chr6_4	CDS	43158775	43158906	43158775	ID=Msa0988710-mRNA-1:cds;Parent=Msa0988710-mRNA-1
chr6_4	CDS	43159718	43159903	43159718	ID=Msa0988710-mRNA-1:cds;Parent=Msa0988710-mRNA-1
chr6_4	CDS	43160110	43160199	43160110	ID=Msa0988710-mRNA-1:cds;Parent=Msa0988710-mRNA-1
chr6_4	CDS	43160271	43160354	43160271	ID=Msa0988710-mRNA-1:cds;Parent=Msa0988710-mRNA-1
chr6_4	CDS	43160691	43160831	43160691	ID=Msa0988710-mRNA-1:cds;Parent=Msa0988710-mRNA-1
chr6_4	CDS	43161075	43161311	43161075	ID=Msa0988710-mRNA-1:cds;Parent=Msa0988710-mRNA-1
chr6_4	CDS	43162002	43162112	43162002	ID=Msa0988710-mRNA-1:cds;Parent=Msa0988710-mRNA-1
chr6_4	three_prime_UTR	43162113	43162474	43162113	ID=Msa0988710-mRNA-1:three_prime_utr;Parent=Msa0988710-mRNA-1

Gene Sequence

>Msa0988710

ATGGATGGATCAGCTGGCCCTGGTGGTGGAAATGTGAACGCGTTTCTACGGAATTACAAAATGGGGAAAACTCTTGGTATTGGGTCGTTTGGCAAAGTGAAAATTGCCGAGCACGTACTGACGGGTCATAAAGTCGCCATTAAGATTCTCAATCGCCGAAAAATAAAGAACATGGACATGGAAGAAAAAGTTAGAAGAGAAATAAAAATTTTAAGATTGTTCATGCATCACCACATTATACGCCTTTATGAGGTTGTAGAAACCCCAACCGACATTTATGTGGTGATGGAGTATGTGAAATCTGGAGAACTTTTCGATTACATAGTAGAAAAGGGTAGGCTTCAAGAAGATGAAGCTCGCAGTTTCTTCCAGCAGATAATCTCTGGCGTGGAGTACTGTCACAGGAATATGGTAGTTCATAGAGACCTGAAACCCGAAAATTTACTTTTGGACTCAAAATGGAGTGTCAAGATTGCTGATTTTGGCCTGAGCAACATCATGCGTGATGGTCACTTTCTTAAGACAAGTTGCGGAAGCCCCAACTATGCAGCTCCAGAGGTTATCTCTGGGAAATTATATGCTGGACCTGAAGTAGATGTTTGGAGCTGTGGTGTAATTTTATATGCACTTCTCTGTGGCACTCTTCCTTTTGATGATGAAAATATTCCCAACCTCTTCAAAAAAATAAAGGGTGGGATATATACTCTTCCAAGCCATCTATCTCCTGGTGCCAGAGATTTGATACCAAGGCTGCTTGTGGTGGATCCCATGAAAAGGATGACCATACCAGAGATACGCCAACACCCATGGTTCCTACTTCATCTGCCTCGATATTTGGCGGTGCCACCACCAGATACACTTCAACAGGCCAAAAAGATTGATGAGGAGATTCTTCAGGAGGTGGTTAATAGGGGATTTGAAAGGGAGCCATTGGTTGAATCCCTTAAGAACAGGATACAAAACGAGGGTACTGTAACTTACTATTTGTTATTGGACAATCGGTATCGTGTTTCCACCGGCTATCTTGGAGCTGAGTTTCAAGAGACGATGGATTCTGGTTTGAGCCGTATCCACTCCGGTGAAGTTGCTCCTCCAGTCGGTGGACATCGCTTTCCAGGATATATGGATTATCAAGGAGTAGGAATGAGGCAACAGTTCCCTGCTGAGAGAAAATGGGCCCTTGGACTTCAGTCTCGAGCCCAACCTCGTGAAATAATGACCGAAGTCCTCAAAGCACTGCAAGAATTGAGCGTTTGTTGGAAAAAAATTGGACCCTATAACATGAAGTGCAGATGGGCTGTTGTCATCCCTGGTCATCATGGAGGAATGGATAACAATTCTGTGCATAGTAATAATTACCTTGGAAATGACAGCATTATTGAGAATGAAGTTGTTCCTAATTCAACTGTAGTCAAGTTTGAACTGCAGCTGTACAAAACTCAGGAGAAATATCTGCTTGATCTTCAAAGGCTTGAGGGACCCCAGTTTCTTTTCTTGGATCTTTGTGCCGCCTTCCTTGCGCAGCTTCGCGTTCTCTAG

Protein sequence

>Msa0988710

MDGSAGPGGGNVNAFLRNYKMGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMDMEEKVRREIKILRLFMHHHIIRLYEVVETPTDIYVVMEYVKSGELFDYIVEKGRLQEDEARSFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKWSVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRLLVVDPMKRMTIPEIRQHPWFLLHLPRYLAVPPPDTLQQAKKIDEEILQEVVNRGFEREPLVESLKNRIQNEGTVTYYLLLDNRYRVSTGYLGAEFQETMDSGLSRIHSGEVAPPVGGHRFPGYMDYQGVGMRQQFPAERKWALGLQSRAQPREIMTEVLKALQELSVCWKKIGPYNMKCRWAVVIPGHHGGMDNNSVHSNNYLGNDSIIENEVVPNSTVVKFELQLYKTQEKYLLDLQRLEGPQFLFLDLCAAFLAQLRVL*