AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0988930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0988930 MtrunA17_Chr6g0470151 83.425 362 50 1 1 362 1 352 2.16e-164 472
Msa0988930 MtrunA17_Chr2g0289181 46.781 233 124 0 327 559 1 233 4.09e-69 222
Msa0988930 MtrunA17_Chr6g0470161 79.200 125 21 1 435 559 1 120 3.50e-62 200
Msa0988930 MtrunA17_Chr7g0266611 49.697 165 82 1 395 559 2 165 2.10e-35 130
Msa0988930 MtrunA17_Chr8g0366921 51.337 187 72 5 1 180 1 175 1.94e-29 118
Msa0988930 MtrunA17_Chr1g0202461 48.980 98 48 2 318 415 240 335 1.55e-24 105
Msa0988930 MtrunA17_Chr7g0266621 37.092 337 161 7 1 321 1 302 7.60e-23 99.4
Msa0988930 MtrunA17_Chr8g0348311 45.361 97 51 1 317 413 134 228 2.61e-21 95.5
Msa0988930 MtrunA17_Chr7g0248691 41.818 110 56 1 312 413 118 227 1.59e-20 92.8
Msa0988930 MtrunA17_Chr7g0270051 45.977 87 47 0 333 419 46 132 3.41e-20 90.5
Msa0988930 MtrunA17_Chr8g0387501 42.308 104 52 2 341 439 130 230 1.53e-17 83.2
Msa0988930 MtrunA17_Chr2g0293481 46.753 77 40 1 341 417 268 343 5.03e-17 84.0
Msa0988930 MtrunA17_Chr7g0238921 40.566 106 51 3 292 397 87 180 2.41e-16 80.1
Msa0988930 MtrunA17_Chr5g0401821 41.414 99 55 1 316 411 172 270 3.55e-16 79.0
Msa0988930 MtrunA17_Chr2g0293901 42.857 182 88 5 1 181 1 167 1.79e-15 75.5
Msa0988930 MtrunA17_Chr4g0042831 40.860 93 50 2 338 426 276 367 1.99e-15 78.2
Msa0988930 MtrunA17_Chr1g0184691 45.122 82 42 1 321 399 271 352 2.03e-15 78.2
Msa0988930 MtrunA17_Chr4g0071521 43.529 85 45 1 316 397 218 302 2.54e-15 77.0
Msa0988930 MtrunA17_Chr2g0319961 50.794 63 31 0 341 403 81 143 2.56e-15 76.3
Msa0988930 MtrunA17_Chr4g0053281 47.887 71 37 0 341 411 267 337 2.63e-15 77.4
Msa0988930 MtrunA17_Chr8g0379461 47.619 63 33 0 341 403 77 139 3.54e-15 75.5
Msa0988930 MtrunA17_Chr2g0284321 50.000 60 30 0 341 400 36 95 4.57e-15 74.7
Msa0988930 MtrunA17_Chr8g0387981 38.043 92 51 2 310 395 98 189 2.99e-14 74.3
Msa0988930 MtrunA17_Chr7g0218081 43.939 66 36 1 338 403 408 472 4.76e-14 74.7
Msa0988930 MtrunA17_Chr7g0218081 43.077 65 35 2 336 400 224 286 8.39e-11 64.7
Msa0988930 MtrunA17_Chr1g0147881 34.694 98 58 2 320 411 237 334 5.66e-14 73.6
Msa0988930 MtrunA17_Chr7g0228941 42.647 68 39 0 334 401 46 113 5.93e-14 68.9
Msa0988930 MtrunA17_Chr3g0139021 37.778 90 55 1 309 397 282 371 8.66e-14 73.6
Msa0988930 MtrunA17_Chr5g0418191 41.026 78 45 1 338 415 318 394 1.03e-13 73.6
Msa0988930 MtrunA17_Chr3g0136961 39.048 105 60 2 315 418 112 213 1.30e-12 68.6
Msa0988930 MtrunA17_Chr8g0368721 46.809 188 84 4 1 187 1 173 1.45e-12 68.9
Msa0988930 MtrunA17_Chr2g0302391 37.778 90 51 1 341 425 212 301 1.88e-12 69.3
Msa0988930 MtrunA17_Chr7g0249311 46.377 69 35 2 332 400 171 237 2.91e-12 69.3
Msa0988930 MtrunA17_Chr7g0249311 39.744 78 40 2 340 411 392 468 3.34e-12 69.3
Msa0988930 MtrunA17_Chr7g0263531 42.105 76 41 2 341 416 362 434 4.65e-12 68.2
Msa0988930 MtrunA17_Chr3g0129321 39.130 69 39 3 337 404 115 181 4.99e-12 65.5
Msa0988930 MtrunA17_Chr4g0051881 45.902 61 32 1 340 400 178 237 5.52e-12 67.4
Msa0988930 MtrunA17_Chr3g0079691 50.000 62 29 2 339 400 279 338 6.54e-12 68.6
Msa0988930 MtrunA17_Chr3g0079691 39.062 64 38 1 340 403 495 557 2.32e-11 66.6
Msa0988930 MtrunA17_Chr4g0074001 30.702 114 73 3 291 403 313 421 7.20e-12 67.8
Msa0988930 MtrunA17_Chr5g0443131 46.774 62 32 1 340 401 157 217 7.60e-12 66.6
Msa0988930 MtrunA17_Chr7g0243891 48.529 68 33 2 333 400 209 274 1.01e-11 67.4
Msa0988930 MtrunA17_Chr7g0249301 42.188 64 36 1 340 403 292 354 1.18e-11 66.6
Msa0988930 MtrunA17_Chr4g0001361 43.939 66 37 0 335 400 157 222 1.49e-11 65.9
Msa0988930 MtrunA17_Chr5g0445311 38.806 67 40 1 340 406 364 429 2.00e-11 66.6
Msa0988930 MtrunA17_Chr3g0101131 38.806 67 40 1 340 406 415 480 2.17e-11 66.6
Msa0988930 MtrunA17_Chr2g0288871 33.010 103 65 3 299 400 266 365 2.84e-11 66.2
Msa0988930 MtrunA17_Chr3g0099641 36.145 83 50 2 318 400 232 311 5.34e-11 65.1
Msa0988930 MtrunA17_Chr2g0333851 43.750 64 36 0 338 401 167 230 5.92e-11 63.9
Msa0988930 MtrunA17_Chr1g0194481 44.262 61 33 1 340 400 158 217 9.43e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0988930 AT5G52830.1 48.980 98 48 2 318 415 144 239 5.75e-23 100
Msa0988930 AT4G01250.1 35.099 151 92 2 284 430 74 222 3.18e-21 94.7
Msa0988930 AT4G23550.1 44.186 86 47 1 332 417 132 216 7.08e-18 85.1
Msa0988930 AT5G28650.1 41.304 92 51 1 311 399 230 321 3.28e-17 83.6
Msa0988930 AT3G04670.1 36.441 118 61 3 285 399 215 321 3.53e-17 83.6
Msa0988930 AT1G30650.1 34.667 150 94 1 294 443 175 320 7.35e-17 83.6
Msa0988930 AT5G45050.4 40.816 98 57 1 300 397 1002 1098 7.57e-17 85.1
Msa0988930 AT5G45050.1 40.816 98 57 1 300 397 1141 1237 8.78e-17 84.7
Msa0988930 AT5G45050.2 40.816 98 57 1 300 397 1113 1209 9.60e-17 84.7
Msa0988930 AT2G34830.1 55.000 60 27 0 341 400 216 275 1.40e-16 82.8
Msa0988930 AT2G23320.1 43.529 85 45 1 316 397 213 297 1.43e-16 81.3
Msa0988930 AT2G34830.2 55.000 60 27 0 341 400 225 284 1.69e-16 82.4
Msa0988930 AT4G24240.1 40.860 93 52 1 308 397 246 338 2.26e-15 78.2
Msa0988930 AT4G31550.2 38.000 100 59 1 309 405 211 310 1.08e-14 75.9
Msa0988930 AT4G31550.1 38.710 93 54 1 316 405 219 311 1.71e-14 75.1
Msa0988930 AT3G58710.2 46.970 66 35 0 341 406 71 136 2.31e-14 73.9
Msa0988930 AT3G58710.1 46.970 66 35 0 341 406 72 137 2.32e-14 73.9
Msa0988930 AT2G24570.1 39.080 87 50 1 316 399 216 302 3.75e-14 74.3
Msa0988930 AT1G29280.1 48.333 60 31 0 341 400 75 134 5.82e-14 72.8
Msa0988930 AT2G03340.1 41.558 77 44 1 338 414 413 488 1.00e-13 74.3
Msa0988930 AT2G30590.1 39.080 87 50 1 316 399 286 372 2.31e-13 72.4
Msa0988930 AT1G80840.1 39.583 96 53 2 340 432 146 239 4.19e-13 70.9
Msa0988930 AT5G43290.1 41.096 73 42 1 325 397 99 170 8.81e-13 69.3
Msa0988930 AT3G01080.1 42.857 63 35 1 338 400 304 365 1.37e-12 70.1
Msa0988930 AT3G01080.2 36.559 93 48 2 318 400 312 403 1.41e-12 70.5
Msa0988930 AT4G26640.7 41.026 78 43 3 338 414 169 244 2.40e-12 69.7
Msa0988930 AT4G26640.5 41.026 78 43 3 338 414 33 108 2.66e-12 68.9
Msa0988930 AT4G26640.6 41.026 78 43 3 338 414 33 108 2.66e-12 68.9
Msa0988930 AT4G26640.4 41.026 78 43 3 338 414 33 108 2.66e-12 68.9
Msa0988930 AT4G26640.3 41.026 78 43 3 338 414 33 108 2.66e-12 68.9
Msa0988930 AT4G26640.1 41.026 78 43 3 338 414 137 212 2.73e-12 69.7
Msa0988930 AT4G26640.2 41.026 78 43 3 338 414 209 284 2.88e-12 69.7
Msa0988930 AT2G04880.2 44.444 63 34 1 341 403 284 345 3.78e-12 68.9
Msa0988930 AT2G04880.1 44.444 63 34 1 341 403 308 369 3.86e-12 69.3
Msa0988930 AT5G07100.1 46.970 66 34 1 335 400 112 176 4.29e-12 67.8
Msa0988930 AT5G07100.2 46.970 66 34 1 335 400 19 83 4.53e-12 66.2
Msa0988930 AT5G07100.4 46.970 66 34 1 335 400 19 83 4.53e-12 66.2
Msa0988930 AT5G07100.5 46.970 66 34 1 335 400 19 83 4.53e-12 66.2
Msa0988930 AT5G07100.3 46.970 66 34 1 335 400 19 83 4.53e-12 66.2
Msa0988930 AT5G45260.1 34.737 95 51 3 312 403 1187 1273 5.77e-12 69.3
Msa0988930 AT1G13960.1 42.857 63 35 1 338 400 407 468 8.66e-12 68.2
Msa0988930 AT1G13960.2 42.857 63 35 1 338 400 254 315 1.03e-11 67.0
Msa0988930 AT2G47260.1 38.636 88 52 2 313 400 148 233 1.35e-11 66.6
Msa0988930 AT4G18170.1 35.577 104 61 2 302 400 129 231 2.22e-11 65.9
Msa0988930 AT2G37260.1 37.037 81 46 2 321 397 326 405 3.25e-11 65.9
Msa0988930 AT2G37260.3 37.037 81 46 2 321 397 246 325 3.48e-11 65.5
Msa0988930 AT2G37260.2 37.037 81 46 2 321 397 244 323 3.69e-11 65.5
Msa0988930 AT1G29860.1 43.548 62 34 1 340 401 136 196 3.96e-11 64.7
Msa0988930 AT2G25000.2 45.902 61 33 0 340 400 103 163 5.23e-11 63.2
Msa0988930 AT2G25000.4 45.902 61 33 0 340 400 103 163 5.23e-11 63.2
Msa0988930 AT2G25000.3 45.902 61 33 0 340 400 125 185 5.44e-11 63.5
Msa0988930 AT2G21900.1 45.161 62 33 1 340 401 109 169 5.46e-11 62.8
Msa0988930 AT5G56270.1 39.062 64 38 1 340 403 487 549 5.69e-11 65.9
Msa0988930 AT2G46400.1 38.710 93 50 2 310 395 69 161 6.31e-11 63.9

Find 147 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGAATATTCCTGCTTTC+TGG 0.128706 6_4:+43804179 None:intergenic
CCTTCAGGAAACAAACTTAT+TGG 0.167476 6_4:-43803969 Msa0988930:CDS
TTTCTCTAGCAGCGGGTAAA+TGG 0.192922 6_4:+43804105 None:intergenic
TACCCGCTGTTGGAAATTTC+AGG 0.250971 6_4:-43804262 Msa0988930:CDS
AGTGGTGGTGGTTGGGATGG+GGG 0.259814 6_4:+43806260 None:intergenic
TGTGATTGATTGAGCTTTCT+TGG 0.276762 6_4:+43805694 None:intergenic
TTGAGGAGATATGACGTTAT+TGG 0.276825 6_4:+43806422 None:intergenic
TAGTGGTGGTGGTTGGGATG+GGG 0.282225 6_4:+43806259 None:intergenic
GGTGGGAGTATTGAAATTAT+TGG 0.287618 6_4:+43805996 None:intergenic
TGGTGGTCGTGGACAAAATA+TGG 0.290490 6_4:-43805430 Msa0988930:CDS
TAGTCTTTGATGACTTGTTC+TGG 0.291346 6_4:+43804288 None:intergenic
TATGTCAGAGGATTTCTTAT+TGG 0.311118 6_4:-43803901 Msa0988930:CDS
TGTAATGTGGGTTGGGATAG+TGG 0.316848 6_4:+43806242 None:intergenic
ATAGTGGTGGTGGTTGGGAT+GGG 0.318096 6_4:+43806258 None:intergenic
GTGGTGGTGCAGGGGCTAAT+AGG 0.332725 6_4:+43805874 None:intergenic
TTGGGATAGTGGTGGTGGTT+GGG 0.338841 6_4:+43806253 None:intergenic
AACATTATCACTAGTGTTCA+TGG 0.339452 6_4:-43805841 Msa0988930:CDS
GATAGTGGTGGTGGTTGGGA+TGG 0.340741 6_4:+43806257 None:intergenic
CTAAAACCATCAAAGTAAAA+TGG 0.342350 6_4:+43806390 None:intergenic
TTGGTAGGGGTGGGGTTAAC+AGG 0.344695 6_4:+43806015 None:intergenic
TAGTGGTTGTTGAAGGGGTT+TGG 0.351398 6_4:+43806190 None:intergenic
GTGATTGATTGAGCTTTCTT+GGG 0.361329 6_4:+43805695 None:intergenic
CAAATAAGCTTTCAGAAGAT+TGG 0.368905 6_4:-43805450 Msa0988930:CDS
AGTCTTTGATGACTTGTTCT+GGG 0.370924 6_4:+43804289 None:intergenic
AGTCAAGTTGGTGGTGGTGC+AGG 0.372354 6_4:+43805864 None:intergenic
GGTGGAAGGAGAAGTGAGGG+TGG 0.380802 6_4:+43805978 None:intergenic
GTTGGGATAGTGGTGGTGGT+TGG 0.384329 6_4:+43806252 None:intergenic
GGGTTTGGATAATAGTGATT+GGG 0.385706 6_4:+43806205 None:intergenic
AACACTTGATTGTCATTGTT+TGG 0.388067 6_4:+43805757 None:intergenic
TTGGTGTTTGAGATGGAGAC+GGG 0.398630 6_4:+43806469 None:intergenic
CCTTCAACAACCACTATTGC+CGG 0.402694 6_4:-43806183 Msa0988930:CDS
GAATCACAAATCCTGCCTTC+AGG 0.403451 6_4:-43803984 Msa0988930:CDS
AATTAACAACAAGGTAACTT+TGG 0.407679 6_4:-43805488 Msa0988930:CDS
ATGGAGAGAGGTGGTGGGAT+TGG 0.408785 6_4:+43806284 None:intergenic
AAGGAACAGGGTTATTGTCT+TGG 0.412589 6_4:+43806361 None:intergenic
TGAAATTATTGGTAGGGGTG+GGG 0.414985 6_4:+43806007 None:intergenic
GAGGTGGCGGTGAGAGTGGT+TGG 0.415920 6_4:+43806450 None:intergenic
GAACCCAGCTTTGAAATGTT+TGG 0.416902 6_4:+43804233 None:intergenic
GTGATTCACCGGAGTAAACC+TGG 0.417652 6_4:+43804000 None:intergenic
GATTACCCAACACCAGATCT+AGG 0.420153 6_4:-43805666 Msa0988930:CDS
CAAAACATAATTCAAGAATC+AGG 0.420705 6_4:-43805615 Msa0988930:intron
CAACAAGAAATGCAATCAAA+TGG 0.425635 6_4:-43806072 Msa0988930:CDS
TTCTCTAGCAGCGGGTAAAT+GGG 0.428823 6_4:+43804106 None:intergenic
CCGGCAATAGTGGTTGTTGA+AGG 0.431758 6_4:+43806183 None:intergenic
AGGAACAGGGTTATTGTCTT+GGG 0.439157 6_4:+43806362 None:intergenic
TCCAATGGACATTGACGATT+GGG 0.439428 6_4:-43806559 None:intergenic
GTCAAGTTGGTGGTGGTGCA+GGG 0.440160 6_4:+43805865 None:intergenic
CACAACAAAAGTGTCCTCTT+TGG 0.441667 6_4:+43804376 None:intergenic
GCAGGTAAATGGAACTCTAT+TGG 0.442204 6_4:-43804320 Msa0988930:CDS
CTAAGTTCAGTTTCTGAATG+AGG 0.443490 6_4:+43804134 None:intergenic
TTGAAATTATTGGTAGGGGT+GGG 0.444762 6_4:+43806006 None:intergenic
GTCACCAAACATTTCAAAGC+TGG 0.445873 6_4:-43804237 Msa0988930:CDS
ATTGCCGGCCACATAACATT+TGG 0.449722 6_4:-43806168 Msa0988930:CDS
GGTGGAGGTGGCGGTGAGAG+TGG 0.451570 6_4:+43806446 None:intergenic
GTCATGGCGGTAATTCTAGT+AGG 0.454681 6_4:+43805955 None:intergenic
GACGTTATTGGTGGTGGAGG+TGG 0.458710 6_4:+43806434 None:intergenic
TGATTGTTGTAATGTGGGTT+GGG 0.462715 6_4:+43806235 None:intergenic
AGTGATAATGTTAGTCAAGT+TGG 0.462717 6_4:+43805852 None:intergenic
CGGCAATAGTGGTTGTTGAA+GGG 0.467024 6_4:+43806184 None:intergenic
GGGGTTTGGATAATAGTGAT+TGG 0.471326 6_4:+43806204 None:intergenic
ATTAGGTAAAATCCTAGATC+TGG 0.473232 6_4:+43805654 None:intergenic
TAAGTTTGTTTCCTGAAGGC+AGG 0.474115 6_4:+43803973 None:intergenic
GGAGTATTGAAATTATTGGT+AGG 0.476280 6_4:+43806000 None:intergenic
CTCCAATGGACATTGACGAT+TGG 0.476413 6_4:-43806560 None:intergenic
TCTGACATATCAGTCATGTT+TGG 0.477660 6_4:+43803915 None:intergenic
ACCTGGGCATTGCTACTCAT+TGG 0.480044 6_4:+43804017 None:intergenic
ATAGAGTTCCATTTACCTGC+TGG 0.487185 6_4:+43804323 None:intergenic
GTGGGTTGGGATAGTGGTGG+TGG 0.487824 6_4:+43806248 None:intergenic
TGAAGTGATTGTTGTAATGT+GGG 0.489359 6_4:+43806230 None:intergenic
GAGTATTGAAATTATTGGTA+GGG 0.491396 6_4:+43806001 None:intergenic
TAGGGGTGGAAGGAGAAGTG+AGG 0.495500 6_4:+43805974 None:intergenic
TGAGGGATTTCTGATTGACT+AGG 0.496461 6_4:+43804152 None:intergenic
GTTAGCGAAGGCGTTGGTAG+TGG 0.498129 6_4:+43805933 None:intergenic
TGTTATGTGGCCGGCAATAG+TGG 0.498359 6_4:+43806173 None:intergenic
ATGAAGTGATTGTTGTAATG+TGG 0.498474 6_4:+43806229 None:intergenic
AGATATGACGTTATTGGTGG+TGG 0.499087 6_4:+43806428 None:intergenic
CTAATAGGTGCAGTGGTGGT+CGG 0.503498 6_4:+43805889 None:intergenic
AACAAGAAATGCAATCAAAT+GGG 0.503558 6_4:-43806071 Msa0988930:CDS
TAAGTTCAGTTTCTGAATGA+GGG 0.506377 6_4:+43804135 None:intergenic
GTTGGTGTTTGAGATGGAGA+CGG 0.511021 6_4:+43806468 None:intergenic
GTTATTGGTGGTGGAGGTGG+CGG 0.516325 6_4:+43806437 None:intergenic
TCTTGTTGTTCGATAAGTGT+TGG 0.517204 6_4:+43806087 None:intergenic
GATTCAATTTCTCTAGCAGC+GGG 0.517766 6_4:+43804098 None:intergenic
GGCAATAGTGGTTGTTGAAG+GGG 0.518375 6_4:+43806185 None:intergenic
TCACCAAACATTTCAAAGCT+GGG 0.518423 6_4:-43804236 Msa0988930:CDS
GTGATTGTTGTAATGTGGGT+TGG 0.519681 6_4:+43806234 None:intergenic
TCATGGCGGTAATTCTAGTA+GGG 0.520929 6_4:+43805956 None:intergenic
AGTATTGAAATTATTGGTAG+GGG 0.523845 6_4:+43806002 None:intergenic
AAAATCCTAGATCTGGTGTT+GGG 0.524682 6_4:+43805661 None:intergenic
AGGGGTGGAAGGAGAAGTGA+GGG 0.525895 6_4:+43805975 None:intergenic
AAGACTAGATTACCCGCTGT+TGG 0.528458 6_4:-43804272 Msa0988930:CDS
AGAGTGGTTGGTGTTTGAGA+TGG 0.528977 6_4:+43806462 None:intergenic
GAGTAATGCATAATCTGAAA+TGG 0.529216 6_4:+43805801 None:intergenic
ATTGAAATTATTGGTAGGGG+TGG 0.533722 6_4:+43806005 None:intergenic
AGGAGATATGACGTTATTGG+TGG 0.536868 6_4:+43806425 None:intergenic
TCCCAATCGTCAATGTCCAT+TGG 0.539210 6_4:+43806558 None:intergenic
GAAGGCGTTGGTAGTGGTCA+TGG 0.541151 6_4:+43805939 None:intergenic
CCAATAAGTTTGTTTCCTGA+AGG 0.543295 6_4:+43803969 None:intergenic
GAGGGATTTCTGATTGACTA+GGG 0.547273 6_4:+43804153 None:intergenic
AGGCAGGATTTGTGATTCAC+CGG 0.548075 6_4:+43803989 None:intergenic
GGTTTGGATAATAGTGATTG+GGG 0.549958 6_4:+43806206 None:intergenic
AAACCATCAAAGTAAAATGG+TGG 0.550726 6_4:+43806393 None:intergenic
ATCACTAACACTAGTGCTCA+TGG 0.555133 6_4:-43806141 Msa0988930:CDS
ATAAGCTTTCAGAAGATTGG+TGG 0.556521 6_4:-43805447 Msa0988930:CDS
GTGGAAGGAGAAGTGAGGGT+GGG 0.560411 6_4:+43805979 None:intergenic
GTAATTCTAGTAGGGGTGGA+AGG 0.560785 6_4:+43805964 None:intergenic
TCAAGTTGGTGGTGGTGCAG+GGG 0.561949 6_4:+43805866 None:intergenic
TGATTGATTGAGCTTTCTTG+GGG 0.561989 6_4:+43805696 None:intergenic
TAAAATCCTAGATCTGGTGT+TGG 0.562048 6_4:+43805660 None:intergenic
TATGACGTTATTGGTGGTGG+AGG 0.562705 6_4:+43806431 None:intergenic
GCCAATGAGTAGCAATGCCC+AGG 0.566515 6_4:-43804018 Msa0988930:CDS
CAGGGTTATTGTCTTGGGCA+AGG 0.568974 6_4:+43806367 None:intergenic
AAAAGAGGCGGGGTTAGTAA+AGG 0.569673 6_4:+43806500 None:intergenic
GGGGCATGGAGAGAGGTGGT+GGG 0.569845 6_4:+43806279 None:intergenic
TTTCAGAAGATTGGTGGTCG+TGG 0.572428 6_4:-43805441 Msa0988930:CDS
AGCAATGCCCAGGTTTACTC+CGG 0.575866 6_4:-43804008 Msa0988930:CDS
GCAGGGGCTAATAGGTGCAG+TGG 0.576808 6_4:+43805882 None:intergenic
ATGTGAAAAGACCTTGGATG+TGG 0.577521 6_4:+43805385 None:intergenic
AGCTTTGTTGCTATTGACAA+AGG 0.577889 6_4:+43806527 None:intergenic
GGCGGTAATTCTAGTAGGGG+TGG 0.578698 6_4:+43805960 None:intergenic
TGAAATGGTAGGATATTGAC+TGG 0.578765 6_4:+43805816 None:intergenic
ATGTCGATCATCCAGAAAGC+AGG 0.580169 6_4:-43804190 Msa0988930:CDS
AACCATCAAAGTAAAATGGT+GGG 0.584704 6_4:+43806394 None:intergenic
ATAGAAAACCATCATTGAAG+TGG 0.585500 6_4:+43803871 None:intergenic
AATGCATAATCTGAAATGGT+AGG 0.587445 6_4:+43805805 None:intergenic
TGTGGGGTTAGCGAAGGCGT+TGG 0.595580 6_4:+43805927 None:intergenic
TGATTGTACCAAATGTTATG+TGG 0.596955 6_4:+43806160 None:intergenic
AAAGCTTATTTGTTCTCACA+TGG 0.598586 6_4:+43805461 None:intergenic
GACCTGAAATTTCCAACAGC+GGG 0.604025 6_4:+43804260 None:intergenic
AGTTGTTGTGGGGTTAGCGA+AGG 0.605077 6_4:+43805921 None:intergenic
TGATTCAATTTCTCTAGCAG+CGG 0.608307 6_4:+43804097 None:intergenic
TGTACCAAATGTTATGTGGC+CGG 0.610476 6_4:+43806164 None:intergenic
CTTTGATGACTTGTTCTGGG+AGG 0.611922 6_4:+43804292 None:intergenic
TGATTCACCGGAGTAAACCT+GGG 0.612077 6_4:+43804001 None:intergenic
GGGGCTAATAGGTGCAGTGG+TGG 0.614826 6_4:+43805885 None:intergenic
TTAGCGGGTCCCCACATCCA+AGG 0.623038 6_4:-43805396 Msa0988930:intron
TGTGAAAAGACCTTGGATGT+GGG 0.630725 6_4:+43805386 None:intergenic
GATAATGTTAGTCAAGTTGG+TGG 0.636625 6_4:+43805855 None:intergenic
GTGAAAAGACCTTGGATGTG+GGG 0.637723 6_4:+43805387 None:intergenic
AATGTTAGTCAAGTTGGTGG+TGG 0.642962 6_4:+43805858 None:intergenic
TGGTGTTTGAGATGGAGACG+GGG 0.666275 6_4:+43806470 None:intergenic
CATGGCGGTAATTCTAGTAG+GGG 0.672579 6_4:+43805957 None:intergenic
AAACATGACTGATATGTCAG+AGG 0.673297 6_4:-43803913 Msa0988930:CDS
AATGTGGGTTGGGATAGTGG+TGG 0.673840 6_4:+43806245 None:intergenic
GATTGATTGAGCTTTCTTGG+GGG 0.688353 6_4:+43805697 None:intergenic
CGACCTGAAATTTCCAACAG+CGG 0.704425 6_4:+43804259 None:intergenic
GGCGTTGGTAGTGGTCATGG+CGG 0.717922 6_4:+43805942 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATAAATAAATTTTAT+GGG + chr6_4:43805468-43805487 None:intergenic 0.0%
!!! TTTAAAATAAATAAATTTTA+TGG + chr6_4:43805469-43805488 None:intergenic 0.0%
!!! TTAAATATTTTAATATAAAA+AGG - chr6_4:43805537-43805556 Msa0988930:intron 0.0%
!!! TATCAAAATTATTGTATTTT+TGG - chr6_4:43805324-43805343 Msa0988930:intron 10.0%
!! ACTAAAAATATATGTTTATT+GGG + chr6_4:43805882-43805901 None:intergenic 10.0%
!! TACTAAAAATATATGTTTAT+TGG + chr6_4:43805883-43805902 None:intergenic 10.0%
!!! ATATGTAAAAGTTAGATTTT+TGG + chr6_4:43805059-43805078 None:intergenic 15.0%
!!! ATTTTAGTCAATCATAAATA+AGG + chr6_4:43805518-43805537 None:intergenic 15.0%
!! AAATTTATTCATAGGATAAT+TGG + chr6_4:43805564-43805583 None:intergenic 15.0%
!! AAAAGAAAGATGTATTTATA+TGG - chr6_4:43805657-43805676 Msa0988930:CDS 15.0%
!!! CTAATGTTTAAATATGTTTT+TGG + chr6_4:43805684-43805703 None:intergenic 15.0%
!!! TGAAATCATTTTGTTTAAGT+GGG + chr6_4:43804087-43804106 None:intergenic 20.0%
!!! ATGAAATCATTTTGTTTAAG+TGG + chr6_4:43804088-43804107 None:intergenic 20.0%
!! TTACAGAAAAATTAACAACA+AGG - chr6_4:43804921-43804940 Msa0988930:intron 20.0%
!!! TTTTTGGTTTAAGTACAAAA+TGG - chr6_4:43805340-43805359 Msa0988930:intron 20.0%
!!! TAACAATCAAAACTTTTACA+TGG + chr6_4:43805385-43805404 None:intergenic 20.0%
!! AACAAGTAGAAAAAACAAAA+AGG + chr6_4:43805432-43805451 None:intergenic 20.0%
!! TTCACTTTGTATTTATGATA+AGG - chr6_4:43805707-43805726 Msa0988930:CDS 20.0%
!! TCACTTTGTATTTATGATAA+GGG - chr6_4:43805708-43805727 Msa0988930:CDS 20.0%
!! AAATTAACCTTATCAAGTAT+TGG + chr6_4:43805742-43805761 None:intergenic 20.0%
!! GTATAAGATATTAGCTATTA+AGG - chr6_4:43805900-43805919 Msa0988930:CDS 20.0%
! CTAAAACCATCAAAGTAAAA+TGG + chr6_4:43804031-43804050 None:intergenic 25.0%
!!! GAAATCATTTTGTTTAAGTG+GGG + chr6_4:43804086-43804105 None:intergenic 25.0%
! AACAAGAAATGCAATCAAAT+GGG - chr6_4:43804347-43804366 Msa0988930:CDS 25.0%
!! AGTATTGAAATTATTGGTAG+GGG + chr6_4:43804419-43804438 None:intergenic 25.0%
!!! GAGTATTGAAATTATTGGTA+GGG + chr6_4:43804420-43804439 None:intergenic 25.0%
! CAAAACATAATTCAAGAATC+AGG - chr6_4:43804803-43804822 Msa0988930:intron 25.0%
! AATTAACAACAAGGTAACTT+TGG - chr6_4:43804930-43804949 Msa0988930:intron 25.0%
! TATGGACAAAAAAACATTAG+CGG - chr6_4:43805006-43805025 Msa0988930:intron 25.0%
! TTAATACAAACATGATACCT+AGG - chr6_4:43805114-43805133 Msa0988930:intron 25.0%
! TAATACAAACATGATACCTA+GGG - chr6_4:43805115-43805134 Msa0988930:intron 25.0%
!!! TTTCTACTTGTTGTTTGTTT+TGG - chr6_4:43805440-43805459 Msa0988930:CDS 25.0%
! TCTCTGCAAAATTTATTCAT+AGG + chr6_4:43805572-43805591 None:intergenic 25.0%
! ACAAATATATCACTCATTTC+AGG - chr6_4:43805820-43805839 Msa0988930:CDS 25.0%
!! CAATCAATGAATGATTTTTC+AGG - chr6_4:43805955-43805974 Msa0988930:CDS 25.0%
!! GAAAACAAGTTTTCAACATT+AGG + chr6_4:43806350-43806369 None:intergenic 25.0%
!! TAAAATGGTGGGATATTTTG+AGG + chr6_4:43804016-43804035 None:intergenic 30.0%
AACCATCAAAGTAAAATGGT+GGG + chr6_4:43804027-43804046 None:intergenic 30.0%
AAACCATCAAAGTAAAATGG+TGG + chr6_4:43804028-43804047 None:intergenic 30.0%
!! TTTTGTTTAAGTGGGGAAAA+AGG + chr6_4:43804079-43804098 None:intergenic 30.0%
TGAAGTGATTGTTGTAATGT+GGG + chr6_4:43804191-43804210 None:intergenic 30.0%
ATGAAGTGATTGTTGTAATG+TGG + chr6_4:43804192-43804211 None:intergenic 30.0%
TGATTGTACCAAATGTTATG+TGG + chr6_4:43804261-43804280 None:intergenic 30.0%
!! AAGTGTTGGACAATCAAAAA+AGG + chr6_4:43804320-43804339 None:intergenic 30.0%
CAACAAGAAATGCAATCAAA+TGG - chr6_4:43804346-43804365 Msa0988930:CDS 30.0%
!! GGAGTATTGAAATTATTGGT+AGG + chr6_4:43804421-43804440 None:intergenic 30.0%
! AGTGATAATGTTAGTCAAGT+TGG + chr6_4:43804569-43804588 None:intergenic 30.0%
AACATTATCACTAGTGTTCA+TGG - chr6_4:43804577-43804596 Msa0988930:intron 30.0%
! AATGCATAATCTGAAATGGT+AGG + chr6_4:43804616-43804635 None:intergenic 30.0%
GAGTAATGCATAATCTGAAA+TGG + chr6_4:43804620-43804639 None:intergenic 30.0%
AACACTTGATTGTCATTGTT+TGG + chr6_4:43804664-43804683 None:intergenic 30.0%
ATTAGGTAAAATCCTAGATC+TGG + chr6_4:43804767-43804786 None:intergenic 30.0%
! GCTTTTTGTGAATCTGAATT+AGG + chr6_4:43804784-43804803 None:intergenic 30.0%
AAAGCTTATTTGTTCTCACA+TGG + chr6_4:43804960-43804979 None:intergenic 30.0%
CAAATAAGCTTTCAGAAGAT+TGG - chr6_4:43804968-43804987 Msa0988930:intron 30.0%
ATGGACAAAAAAACATTAGC+GGG - chr6_4:43805007-43805026 Msa0988930:intron 30.0%
!!! ATACCTAGGGTTTTAAATAG+TGG - chr6_4:43805128-43805147 Msa0988930:intron 30.0%
!!! CATCTTTGTTTTCTATCTGT+TGG + chr6_4:43805595-43805614 None:intergenic 30.0%
ATTAAGGTGATACGATTTAG+AGG - chr6_4:43805916-43805935 Msa0988930:CDS 30.0%
TAAGTTCAGTTTCTGAATGA+GGG + chr6_4:43806286-43806305 None:intergenic 30.0%
TATGTCAGAGGATTTCTTAT+TGG - chr6_4:43806517-43806536 Msa0988930:CDS 30.0%
ATAGAAAACCATCATTGAAG+TGG + chr6_4:43806550-43806569 None:intergenic 30.0%
!! AGCTTTGTTGCTATTGACAA+AGG + chr6_4:43803894-43803913 None:intergenic 35.0%
TTGAGGAGATATGACGTTAT+TGG + chr6_4:43803999-43804018 None:intergenic 35.0%
! ATCCCACCATTTTACTTTGA+TGG - chr6_4:43804022-43804041 Msa0988930:CDS 35.0%
TGATTGTTGTAATGTGGGTT+GGG + chr6_4:43804186-43804205 None:intergenic 35.0%
GGTTTGGATAATAGTGATTG+GGG + chr6_4:43804215-43804234 None:intergenic 35.0%
GGGTTTGGATAATAGTGATT+GGG + chr6_4:43804216-43804235 None:intergenic 35.0%
GTTGGACAATCAAAAAAGGT+GGG + chr6_4:43804316-43804335 None:intergenic 35.0%
TGTTGGACAATCAAAAAAGG+TGG + chr6_4:43804317-43804336 None:intergenic 35.0%
!! TCTTGTTGTTCGATAAGTGT+TGG + chr6_4:43804334-43804353 None:intergenic 35.0%
TTGAAATTATTGGTAGGGGT+GGG + chr6_4:43804415-43804434 None:intergenic 35.0%
ATTGAAATTATTGGTAGGGG+TGG + chr6_4:43804416-43804435 None:intergenic 35.0%
!! GGTGGGAGTATTGAAATTAT+TGG + chr6_4:43804425-43804444 None:intergenic 35.0%
GAGTGAAAAAAGTTGTTGTG+GGG + chr6_4:43804510-43804529 None:intergenic 35.0%
GGAGTGAAAAAAGTTGTTGT+GGG + chr6_4:43804511-43804530 None:intergenic 35.0%
!! GATAATGTTAGTCAAGTTGG+TGG + chr6_4:43804566-43804585 None:intergenic 35.0%
TGAAATGGTAGGATATTGAC+TGG + chr6_4:43804605-43804624 None:intergenic 35.0%
TGATTGATTGAGCTTTCTTG+GGG + chr6_4:43804725-43804744 None:intergenic 35.0%
GTGATTGATTGAGCTTTCTT+GGG + chr6_4:43804726-43804745 None:intergenic 35.0%
TGTGATTGATTGAGCTTTCT+TGG + chr6_4:43804727-43804746 None:intergenic 35.0%
AAAATCCTAGATCTGGTGTT+GGG + chr6_4:43804760-43804779 None:intergenic 35.0%
TAAAATCCTAGATCTGGTGT+TGG + chr6_4:43804761-43804780 None:intergenic 35.0%
ATAAGCTTTCAGAAGATTGG+TGG - chr6_4:43804971-43804990 Msa0988930:intron 35.0%
! TTTTGGATGTGAAAAGACCT+TGG + chr6_4:43805042-43805061 None:intergenic 35.0%
! AGACCACTATTTAAAACCCT+AGG + chr6_4:43805134-43805153 None:intergenic 35.0%
! CTGAATTGTGGTCTTAATCT+AGG - chr6_4:43805180-43805199 Msa0988930:intron 35.0%
AAACACGCCAATACTTGATA+AGG - chr6_4:43805732-43805751 Msa0988930:CDS 35.0%
ACAAAAAAGTGACACCAAAG+AGG - chr6_4:43806028-43806047 Msa0988930:CDS 35.0%
!! ACTTTTGTTGTGACGTTTGT+TGG - chr6_4:43806053-43806072 Msa0988930:CDS 35.0%
ATGAAAAACCAGCAGGTAAA+TGG - chr6_4:43806087-43806106 Msa0988930:CDS 35.0%
!! AGTCTTTGATGACTTGTTCT+GGG + chr6_4:43806132-43806151 None:intergenic 35.0%
!! TAGTCTTTGATGACTTGTTC+TGG + chr6_4:43806133-43806152 None:intergenic 35.0%
TCACCAAACATTTCAAAGCT+GGG - chr6_4:43806182-43806201 Msa0988930:CDS 35.0%
ACTTGAATATTCCTGCTTTC+TGG + chr6_4:43806242-43806261 None:intergenic 35.0%
CTAAGTTCAGTTTCTGAATG+AGG + chr6_4:43806287-43806306 None:intergenic 35.0%
TGATTCAATTTCTCTAGCAG+CGG + chr6_4:43806324-43806343 None:intergenic 35.0%
! CCAATAAGTTTGTTTCCTGA+AGG + chr6_4:43806452-43806471 None:intergenic 35.0%
CCTTCAGGAAACAAACTTAT+TGG - chr6_4:43806449-43806468 Msa0988930:CDS 35.0%
TCTGACATATCAGTCATGTT+TGG + chr6_4:43806506-43806525 None:intergenic 35.0%
AAACATGACTGATATGTCAG+AGG - chr6_4:43806505-43806524 Msa0988930:CDS 35.0%
!! GATTTTGACCACTTCAATGA+TGG - chr6_4:43806539-43806558 Msa0988930:CDS 35.0%
AGACGGGGTTTCAAAAAAAG+AGG + chr6_4:43803936-43803955 None:intergenic 40.0%
AGATATGACGTTATTGGTGG+TGG + chr6_4:43803993-43804012 None:intergenic 40.0%
AGGAGATATGACGTTATTGG+TGG + chr6_4:43803996-43804015 None:intergenic 40.0%
AGGAACAGGGTTATTGTCTT+GGG + chr6_4:43804059-43804078 None:intergenic 40.0%
AAGGAACAGGGTTATTGTCT+TGG + chr6_4:43804060-43804079 None:intergenic 40.0%
TAAGTGGGGAAAAAGGAACA+GGG + chr6_4:43804072-43804091 None:intergenic 40.0%
TTAAGTGGGGAAAAAGGAAC+AGG + chr6_4:43804073-43804092 None:intergenic 40.0%
GTGATTGTTGTAATGTGGGT+TGG + chr6_4:43804187-43804206 None:intergenic 40.0%
GGGGTTTGGATAATAGTGAT+TGG + chr6_4:43804217-43804236 None:intergenic 40.0%
TGTACCAAATGTTATGTGGC+CGG + chr6_4:43804257-43804276 None:intergenic 40.0%
ATCACTAACACTAGTGCTCA+TGG - chr6_4:43804277-43804296 Msa0988930:CDS 40.0%
TGAAATTATTGGTAGGGGTG+GGG + chr6_4:43804414-43804433 None:intergenic 40.0%
TCATGGCGGTAATTCTAGTA+GGG + chr6_4:43804465-43804484 None:intergenic 40.0%
CGGAGTGAAAAAAGTTGTTG+TGG + chr6_4:43804512-43804531 None:intergenic 40.0%
!! AATGTTAGTCAAGTTGGTGG+TGG + chr6_4:43804563-43804582 None:intergenic 40.0%
GATTGATTGAGCTTTCTTGG+GGG + chr6_4:43804724-43804743 None:intergenic 40.0%
TGTGAAAAGACCTTGGATGT+GGG + chr6_4:43805035-43805054 None:intergenic 40.0%
ATGTGAAAAGACCTTGGATG+TGG + chr6_4:43805036-43805055 None:intergenic 40.0%
ATTCAGTGCAATGTCAAGGA+TGG + chr6_4:43805166-43805185 None:intergenic 40.0%
CACAATTCAGTGCAATGTCA+AGG + chr6_4:43805170-43805189 None:intergenic 40.0%
CTTGACATTGCACTGAATTG+TGG - chr6_4:43805168-43805187 Msa0988930:intron 40.0%
! ACTCATTTCAGGTAGAGAGT+TGG - chr6_4:43805831-43805850 Msa0988930:CDS 40.0%
! CTCATTTCAGGTAGAGAGTT+GGG - chr6_4:43805832-43805851 Msa0988930:CDS 40.0%
!! CACAACAAAAGTGTCCTCTT+TGG + chr6_4:43806045-43806064 None:intergenic 40.0%
CACAATCATGAAAAACCAGC+AGG - chr6_4:43806080-43806099 Msa0988930:CDS 40.0%
ATAGAGTTCCATTTACCTGC+TGG + chr6_4:43806098-43806117 None:intergenic 40.0%
GCAGGTAAATGGAACTCTAT+TGG - chr6_4:43806098-43806117 Msa0988930:CDS 40.0%
GTCACCAAACATTTCAAAGC+TGG - chr6_4:43806181-43806200 Msa0988930:CDS 40.0%
!! GAACCCAGCTTTGAAATGTT+TGG + chr6_4:43806188-43806207 None:intergenic 40.0%
GAGGGATTTCTGATTGACTA+GGG + chr6_4:43806268-43806287 None:intergenic 40.0%
TGAGGGATTTCTGATTGACT+AGG + chr6_4:43806269-43806288 None:intergenic 40.0%
GATTCAATTTCTCTAGCAGC+GGG + chr6_4:43806323-43806342 None:intergenic 40.0%
! TAAGTTTGTTTCCTGAAGGC+AGG + chr6_4:43806448-43806467 None:intergenic 40.0%
! AAAAGAGGCGGGGTTAGTAA+AGG + chr6_4:43803921-43803940 None:intergenic 45.0%
GGGTTTCAAAAAAAGAGGCG+GGG + chr6_4:43803931-43803950 None:intergenic 45.0%
GGGGTTTCAAAAAAAGAGGC+GGG + chr6_4:43803932-43803951 None:intergenic 45.0%
CGGGGTTTCAAAAAAAGAGG+CGG + chr6_4:43803933-43803952 None:intergenic 45.0%
! TTGGTGTTTGAGATGGAGAC+GGG + chr6_4:43803952-43803971 None:intergenic 45.0%
! GTTGGTGTTTGAGATGGAGA+CGG + chr6_4:43803953-43803972 None:intergenic 45.0%
! AGAGTGGTTGGTGTTTGAGA+TGG + chr6_4:43803959-43803978 None:intergenic 45.0%
!! TATGACGTTATTGGTGGTGG+AGG + chr6_4:43803990-43804009 None:intergenic 45.0%
!! TGTAATGTGGGTTGGGATAG+TGG + chr6_4:43804179-43804198 None:intergenic 45.0%
TAGTGGTTGTTGAAGGGGTT+TGG + chr6_4:43804231-43804250 None:intergenic 45.0%
GGCAATAGTGGTTGTTGAAG+GGG + chr6_4:43804236-43804255 None:intergenic 45.0%
CGGCAATAGTGGTTGTTGAA+GGG + chr6_4:43804237-43804256 None:intergenic 45.0%
CCTTCAACAACCACTATTGC+CGG - chr6_4:43804235-43804254 Msa0988930:CDS 45.0%
ATTGCCGGCCACATAACATT+TGG - chr6_4:43804250-43804269 Msa0988930:CDS 45.0%
GTAATTCTAGTAGGGGTGGA+AGG + chr6_4:43804457-43804476 None:intergenic 45.0%
CATGGCGGTAATTCTAGTAG+GGG + chr6_4:43804464-43804483 None:intergenic 45.0%
GTCATGGCGGTAATTCTAGT+AGG + chr6_4:43804466-43804485 None:intergenic 45.0%
GATTACCCAACACCAGATCT+AGG - chr6_4:43804752-43804771 Msa0988930:intron 45.0%
! TTTCAGAAGATTGGTGGTCG+TGG - chr6_4:43804977-43804996 Msa0988930:intron 45.0%
TGGTGGTCGTGGACAAAATA+TGG - chr6_4:43804988-43805007 Msa0988930:intron 45.0%
GTGAAAAGACCTTGGATGTG+GGG + chr6_4:43805034-43805053 None:intergenic 45.0%
!! CTTTGATGACTTGTTCTGGG+AGG + chr6_4:43806129-43806148 None:intergenic 45.0%
AAGACTAGATTACCCGCTGT+TGG - chr6_4:43806146-43806165 Msa0988930:CDS 45.0%
TACCCGCTGTTGGAAATTTC+AGG - chr6_4:43806156-43806175 Msa0988930:CDS 45.0%
GACCTGAAATTTCCAACAGC+GGG + chr6_4:43806161-43806180 None:intergenic 45.0%
CGACCTGAAATTTCCAACAG+CGG + chr6_4:43806162-43806181 None:intergenic 45.0%
ATGTCGATCATCCAGAAAGC+AGG - chr6_4:43806228-43806247 Msa0988930:CDS 45.0%
TTCTCTAGCAGCGGGTAAAT+GGG + chr6_4:43806315-43806334 None:intergenic 45.0%
TTTCTCTAGCAGCGGGTAAA+TGG + chr6_4:43806316-43806335 None:intergenic 45.0%
TGATTCACCGGAGTAAACCT+GGG + chr6_4:43806420-43806439 None:intergenic 45.0%
AGGCAGGATTTGTGATTCAC+CGG + chr6_4:43806432-43806451 None:intergenic 45.0%
GAATCACAAATCCTGCCTTC+AGG - chr6_4:43806434-43806453 Msa0988930:CDS 45.0%
! TGGTGTTTGAGATGGAGACG+GGG + chr6_4:43803951-43803970 None:intergenic 50.0%
CAGGGTTATTGTCTTGGGCA+AGG + chr6_4:43804054-43804073 None:intergenic 50.0%
!! ATAGTGGTGGTGGTTGGGAT+GGG + chr6_4:43804163-43804182 None:intergenic 50.0%
!! TTGGGATAGTGGTGGTGGTT+GGG + chr6_4:43804168-43804187 None:intergenic 50.0%
!! AATGTGGGTTGGGATAGTGG+TGG + chr6_4:43804176-43804195 None:intergenic 50.0%
CCGGCAATAGTGGTTGTTGA+AGG + chr6_4:43804238-43804257 None:intergenic 50.0%
TGTTATGTGGCCGGCAATAG+TGG + chr6_4:43804248-43804267 None:intergenic 50.0%
! AGTTGTTGTGGGGTTAGCGA+AGG + chr6_4:43804500-43804519 None:intergenic 50.0%
CTAATAGGTGCAGTGGTGGT+CGG + chr6_4:43804532-43804551 None:intergenic 50.0%
AGCTTTCTTGGGGGTTGTTG+TGG + chr6_4:43804715-43804734 None:intergenic 50.0%
! ACCTGGGCATTGCTACTCAT+TGG + chr6_4:43806404-43806423 None:intergenic 50.0%
AGCAATGCCCAGGTTTACTC+CGG - chr6_4:43806410-43806429 Msa0988930:CDS 50.0%
GTGATTCACCGGAGTAAACC+TGG + chr6_4:43806421-43806440 None:intergenic 50.0%
!! GTTATTGGTGGTGGAGGTGG+CGG + chr6_4:43803984-43804003 None:intergenic 55.0%
!! GACGTTATTGGTGGTGGAGG+TGG + chr6_4:43803987-43804006 None:intergenic 55.0%
!! ATGGAGAGAGGTGGTGGGAT+TGG + chr6_4:43804137-43804156 None:intergenic 55.0%
!! TAGTGGTGGTGGTTGGGATG+GGG + chr6_4:43804162-43804181 None:intergenic 55.0%
!! GATAGTGGTGGTGGTTGGGA+TGG + chr6_4:43804164-43804183 None:intergenic 55.0%
!! GTTGGGATAGTGGTGGTGGT+TGG + chr6_4:43804169-43804188 None:intergenic 55.0%
TTGGTAGGGGTGGGGTTAAC+AGG + chr6_4:43804406-43804425 None:intergenic 55.0%
GTGGAAGGAGAAGTGAGGGT+GGG + chr6_4:43804442-43804461 None:intergenic 55.0%
AGGGGTGGAAGGAGAAGTGA+GGG + chr6_4:43804446-43804465 None:intergenic 55.0%
TAGGGGTGGAAGGAGAAGTG+AGG + chr6_4:43804447-43804466 None:intergenic 55.0%
GGCGGTAATTCTAGTAGGGG+TGG + chr6_4:43804461-43804480 None:intergenic 55.0%
!! GAAGGCGTTGGTAGTGGTCA+TGG + chr6_4:43804482-43804501 None:intergenic 55.0%
!! GTTAGCGAAGGCGTTGGTAG+TGG + chr6_4:43804488-43804507 None:intergenic 55.0%
!! TCAAGTTGGTGGTGGTGCAG+GGG + chr6_4:43804555-43804574 None:intergenic 55.0%
!! GTCAAGTTGGTGGTGGTGCA+GGG + chr6_4:43804556-43804575 None:intergenic 55.0%
!! AGTCAAGTTGGTGGTGGTGC+AGG + chr6_4:43804557-43804576 None:intergenic 55.0%
GCCAATGAGTAGCAATGCCC+AGG - chr6_4:43806400-43806419 Msa0988930:CDS 55.0%
!! AGTGGTGGTGGTTGGGATGG+GGG + chr6_4:43804161-43804180 None:intergenic 60.0%
!! GTGGGTTGGGATAGTGGTGG+TGG + chr6_4:43804173-43804192 None:intergenic 60.0%
GGTGGAAGGAGAAGTGAGGG+TGG + chr6_4:43804443-43804462 None:intergenic 60.0%
!! GGCGTTGGTAGTGGTCATGG+CGG + chr6_4:43804479-43804498 None:intergenic 60.0%
! TGTGGGGTTAGCGAAGGCGT+TGG + chr6_4:43804494-43804513 None:intergenic 60.0%
GGGGCTAATAGGTGCAGTGG+TGG + chr6_4:43804536-43804555 None:intergenic 60.0%
GCAGGGGCTAATAGGTGCAG+TGG + chr6_4:43804539-43804558 None:intergenic 60.0%
! GTGGTGGTGCAGGGGCTAAT+AGG + chr6_4:43804547-43804566 None:intergenic 60.0%
! TTAGCGGGTCCCCACATCCA+AGG - chr6_4:43805022-43805041 Msa0988930:intron 60.0%
! GAGGTGGCGGTGAGAGTGGT+TGG + chr6_4:43803971-43803990 None:intergenic 65.0%
GGGGCATGGAGAGAGGTGGT+GGG + chr6_4:43804142-43804161 None:intergenic 65.0%
! GATGGGGGCATGGAGAGAGG+TGG + chr6_4:43804146-43804165 None:intergenic 65.0%
! TGGGATGGGGGCATGGAGAG+AGG + chr6_4:43804149-43804168 None:intergenic 65.0%
TGGTGGTTGGGATGGGGGCA+TGG + chr6_4:43804156-43804175 None:intergenic 65.0%
! GGTGGAGGTGGCGGTGAGAG+TGG + chr6_4:43803975-43803994 None:intergenic 70.0%
! GGGGGCATGGAGAGAGGTGG+TGG + chr6_4:43804143-43804162 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 43803863 43806577 43803863 ID=Msa0988930;Name=Msa0988930
chr6_4 mRNA 43803863 43806577 43803863 ID=Msa0988930-mRNA-1;Parent=Msa0988930;Name=Msa0988930-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|559
chr6_4 exon 43805616 43806577 43805616 ID=Msa0988930-mRNA-1:exon:10103;Parent=Msa0988930-mRNA-1
chr6_4 exon 43805397 43805513 43805397 ID=Msa0988930-mRNA-1:exon:10102;Parent=Msa0988930-mRNA-1
chr6_4 exon 43803863 43804463 43803863 ID=Msa0988930-mRNA-1:exon:10101;Parent=Msa0988930-mRNA-1
chr6_4 CDS 43805616 43806577 43805616 ID=Msa0988930-mRNA-1:cds;Parent=Msa0988930-mRNA-1
chr6_4 CDS 43805397 43805513 43805397 ID=Msa0988930-mRNA-1:cds;Parent=Msa0988930-mRNA-1
chr6_4 CDS 43803863 43804463 43803863 ID=Msa0988930-mRNA-1:cds;Parent=Msa0988930-mRNA-1
Gene Sequence

>Msa0988930

ATGGACATTGACGATTGGGATCTCTTTTCCTTTGTCAATAGCAACAAAGCTACAACCTTTACTAACCCCGCCTCTTTTTTTGAAACCCCGTCTCCATCTCAAACACCAACCACTCTCACCGCCACCTCCACCACCAATAACGTCATATCTCCTCAAAATATCCCACCATTTTACTTTGATGGTTTTAGCCTTGCCCAAGACAATAACCCTGTTCCTTTTTCCCCACTTAAACAAAATGATTTCATAGATCTAGACAAATTGAAAATCAATTCCAATCCCACCACCTCTCTCCATGCCCCCATCCCAACCACCACCACTATCCCAACCCACATTACAACAATCACTTCATCCCCAATCACTATTATCCAAACCCCTTCAACAACCACTATTGCCGGCCACATAACATTTGGTACAATCACTAACACTAGTGCTCATGGTTTCAATAAAAAACCCACCTTTTTTGATTGTCCAACACTTATCGAACAACAAGAAATGCAATCAAATGGGCACGAGCTAAATAAATTTATACTCAACAAAAATCCTGTTAACCCCACCCCTACCAATAATTTCAATACTCCCACCCTCACTTCTCCTTCCACCCCTACTAGAATTACCGCCATGACCACTACCAACGCCTTCGCTAACCCCACAACAACTTTTTTCACTCCGACCACCACTGCACCTATTAGCCCCTGCACCACCACCAACTTGACTAACATTATCACTAGTGTTCATGGAACCAGTCAATATCCTACCATTTCAGATTATGCATTACTCATCAAACAACAACAAATTCAACCAAACAATGACAATCAAGTGTTTGATCATGCATACAACTATTCATTTGTTCCACAACAACCCCCAAGAAAGCTCAATCAATCACAAATTCGATTACCCAACACCAGATCTAGGATTTTACCTAATTCAGATTCACAAAAAGCAAAACATAATTCAAGAATCAGAAAAATTAACAACAAGGTAACTTTGGAATGCCATGTGAGAACAAATAAGCTTTCAGAAGATTGGTGGTCGTGGACAAAATATGGACAAAAAAACATTAGCGGGTCCCCACATCCAAGGAGCTACTTTAAATGTAGCAGTTCTAAAGATTGTTCAGCAAAAAAACTAGTACAAAAAAGTGACACCAAAGAGGACACTTTTGTTGTGACGTTTGTTGGAGCACACAATCATGAAAAACCAGCAGGTAAATGGAACTCTATTGGTCTGACCTCCCAGAACAAGTCATCAAAGACTAGATTACCCGCTGTTGGAAATTTCAGGTCGTCACCAAACATTTCAAAGCTGGGTTCTCAAAATGTGACGATGATGCATGTCGATCATCCAGAAAGCAGGAATATTCAAGTTCTCCCTAGTCAATCAGAAATCCCTCATTCAGAAACTGAACTTAGAGAGACCCATTTACCCGCTGCTAGAGAAATTGAATCATCTCCTAATGTTGAAAACTTGTTTTCATATGATGTGACGATGCTACAGTTTGATGAGCCAATGAGTAGCAATGCCCAGGTTTACTCCGGTGAATCACAAATCCTGCCTTCAGGAAACAAACTTATTGGAAACTCTGATGACGATGAAGAAATTATGTTACCAAACATGACTGATATGTCAGAGGATTTCTTATTGGATTTTGACCACTTCAATGATGGTTTTCTATTTCCTTAG
Protein sequence

>Msa0988930

MDIDDWDLFSFVNSNKATTFTNPASFFETPSPSQTPTTLTATSTTNNVISPQNIPPFYFDGFSLAQDNNPVPFSPLKQNDFIDLDKLKINSNPTTSLHAPIPTTTTIPTHITTITSSPITIIQTPSTTTIAGHITFGTITNTSAHGFNKKPTFFDCPTLIEQQEMQSNGHELNKFILNKNPVNPTPTNNFNTPTLTSPSTPTRITAMTTTNAFANPTTTFFTPTTTAPISPCTTTNLTNIITSVHGTSQYPTISDYALLIKQQQIQPNNDNQVFDHAYNYSFVPQQPPRKLNQSQIRLPNTRSRILPNSDSQKAKHNSRIRKINNKVTLECHVRTNKLSEDWWSWTKYGQKNISGSPHPRSYFKCSSSKDCSAKKLVQKSDTKEDTFVVTFVGAHNHEKPAGKWNSIGLTSQNKSSKTRLPAVGNFRSSPNISKLGSQNVTMMHVDHPESRNIQVLPSQSEIPHSETELRETHLPAAREIESSPNVENLFSYDVTMLQFDEPMSSNAQVYSGESQILPSGNKLIGNSDDDEEIMLPNMTDMSEDFLLDFDHFNDGFLFP*