AlfalfaGEDB | Msa0989050

M. sativa cultivar zhongmu-4 / Msa0989050

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989050	GAU40839.1	48.518	371	86	9	218	497	469	825	4.09e-92	312
Msa0989050	GAU40839.1	61.607	224	70	3	8	217	30	251	6.07e-82	285

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989050	sp\|Q6NQJ7\|FRS4_ARATH	30.556	216	134	7	48	251	3	214	9.74e-19	94.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989050	A0A2Z6P9Q3	48.518	371	86	9	218	497	469	825	1.95e-92	312
Msa0989050	A0A2Z6P9Q3	61.607	224	70	3	8	217	30	251	2.90e-82	285

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TFs/TRs:

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Gene ID	Type	Classification
Msa0989050	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989050	MtrunA17_Chr2g0296781	70.811	185	40	2	48	218	3	187	1.25e-81	271
Msa0989050	MtrunA17_Chr2g0296781	45.687	313	80	10	218	441	404	715	5.81e-57	204
Msa0989050	MtrunA17_Chr6g0477261	45.070	355	95	8	218	473	293	646	5.08e-74	249
Msa0989050	MtrunA17_Chr6g0477261	86.301	73	10	0	146	218	4	76	8.41e-34	136
Msa0989050	MtrunA17_Chr1g0196541	39.130	368	102	9	218	503	404	731	9.60e-61	214
Msa0989050	MtrunA17_Chr1g0196541	53.552	183	71	2	48	216	3	185	7.56e-54	195
Msa0989050	MtrunA17_Chr6g0476441	44.737	266	88	6	273	480	25	289	2.40e-52	181
Msa0989050	MtrunA17_Chr6g0476431	58.140	86	31	1	48	128	3	88	5.80e-28	107
Msa0989050	MtrunA17_Chr5g0441581	34.653	202	118	6	28	217	15	214	8.23e-23	103
Msa0989050	MtrunA17_Chr5g0441581	49.296	71	36	0	218	288	432	502	1.89e-12	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989050	AT1G76320.1	30.556	216	134	7	48	251	3	214	9.91e-20	94.0
Msa0989050	AT1G76320.4	30.556	216	134	7	48	251	3	214	9.91e-20	94.0
Msa0989050	AT1G76320.2	30.556	216	134	7	48	251	3	214	1.07e-19	94.0
Msa0989050	AT1G76320.3	30.556	216	134	7	48	251	3	214	1.27e-19	93.6
Msa0989050	AT4G15090.1	27.660	235	143	9	39	251	48	277	2.42e-15	80.1
Msa0989050	AT4G15090.5	27.660	235	143	9	39	251	48	277	2.42e-15	80.1
Msa0989050	AT4G15090.3	27.660	235	143	9	39	251	48	277	2.42e-15	80.1
Msa0989050	AT4G15090.2	27.660	235	143	9	39	251	48	277	2.42e-15	80.1
Msa0989050	AT4G15090.4	27.660	235	143	9	39	251	48	277	2.42e-15	80.1
Msa0989050	AT4G38180.1	25.000	216	139	6	25	218	56	270	8.02e-11	65.5

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Find 83 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCAAAGAATTTCAAG+TGG	0.644675	6_4:+44250707	Msa0989050:CDS
AAAGTGAGGAGACTACGACT+TGG	0.649574	6_4:+44249808	Msa0989050:CDS
AACCATCTTCCACAATGCCA+GGG	0.580735	6_4:-44251199	None:intergenic
AACTCCAAAACCCATAGATT+GGG	0.455626	6_4:-44249392	None:intergenic
AAGAGTTATGCCCAATCTAT+GGG	0.502102	6_4:+44249382	Msa0989050:CDS
AAGATTTCAAAAGGGAAGCC+TGG	0.468615	6_4:+44252749	Msa0989050:CDS
AAGGAAAACAACGCTGATTT+TGG	0.179833	6_4:+44250609	Msa0989050:CDS
AAGGGCGTCCTCCTTCAAAA+AGG	0.415773	6_4:+44251273	Msa0989050:CDS
AAGTATTGAATTTGGATTGA+AGG	0.452798	6_4:-44251682	None:intergenic
AAGTGAGGAGACTACGACTT+GGG	0.414907	6_4:+44249809	Msa0989050:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGTATCTTCTGATGAAG+AGG	+	chr6_4:44249240-44249259	Msa0989050:CDS	30.0%
ATCCATGAAAAATGCAATTG+CGG	+	chr6_4:44250197-44250216	Msa0989050:intron	30.0%
TTTGAGTAAGAGTGATTTCA+TGG	+	chr6_4:44250347-44250366	Msa0989050:intron	30.0%
CTGTTAACTTAAGAACACAA+AGG	-	chr6_4:44250932-44250951	None:intergenic	30.0%
CTTTGTGTTCTTAAGTTAAC+AGG	+	chr6_4:44250930-44250949	Msa0989050:CDS	30.0%
TGAGAGAAAATATAAGAGGA+TGG	-	chr6_4:44250972-44250991	None:intergenic	30.0%
GATCAAAACCACATTTAACA+AGG	-	chr6_4:44251025-44251044	None:intergenic	30.0%
TAAAATGAGGAATTGGATCA+AGG	+	chr6_4:44251142-44251161	Msa0989050:intron	30.0%
ACTTATGAGTGAAGTAAATC+AGG	+	chr6_4:44251701-44251720	Msa0989050:CDS	30.0%
TATTCTCAAGTCATGAATCA+TGG	+	chr6_4:44251814-44251833	Msa0989050:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	44248999	44252790	44248999	ID=Msa0989050;Name=Msa0989050
chr6_4	mRNA	44248999	44252790	44248999	ID=Msa0989050-mRNA-1;Parent=Msa0989050;Name=Msa0989050-mRNA-1;_AED=0.33;_eAED=0.38;_QI=0\|0.35\|0.2\|0.8\|0.35\|0.33\|15\|0\|601
chr6_4	exon	44248999	44249020	44248999	ID=Msa0989050-mRNA-1:exon:10154;Parent=Msa0989050-mRNA-1
chr6_4	exon	44249230	44249424	44249230	ID=Msa0989050-mRNA-1:exon:10155;Parent=Msa0989050-mRNA-1
chr6_4	exon	44249440	44249659	44249440	ID=Msa0989050-mRNA-1:exon:10156;Parent=Msa0989050-mRNA-1
chr6_4	exon	44249687	44249900	44249687	ID=Msa0989050-mRNA-1:exon:10157;Parent=Msa0989050-mRNA-1
chr6_4	exon	44250552	44250731	44250552	ID=Msa0989050-mRNA-1:exon:10158;Parent=Msa0989050-mRNA-1
chr6_4	exon	44250841	44250848	44250841	ID=Msa0989050-mRNA-1:exon:10159;Parent=Msa0989050-mRNA-1
chr6_4	exon	44250923	44251115	44250923	ID=Msa0989050-mRNA-1:exon:10160;Parent=Msa0989050-mRNA-1
chr6_4	exon	44251164	44251382	44251164	ID=Msa0989050-mRNA-1:exon:10161;Parent=Msa0989050-mRNA-1
chr6_4	exon	44251454	44251525	44251454	ID=Msa0989050-mRNA-1:exon:10162;Parent=Msa0989050-mRNA-1
chr6_4	exon	44251627	44251722	44251627	ID=Msa0989050-mRNA-1:exon:10163;Parent=Msa0989050-mRNA-1
chr6_4	exon	44251805	44251861	44251805	ID=Msa0989050-mRNA-1:exon:10164;Parent=Msa0989050-mRNA-1
chr6_4	exon	44251950	44251992	44251950	ID=Msa0989050-mRNA-1:exon:10165;Parent=Msa0989050-mRNA-1
chr6_4	exon	44252089	44252229	44252089	ID=Msa0989050-mRNA-1:exon:10166;Parent=Msa0989050-mRNA-1
chr6_4	exon	44252549	44252556	44252549	ID=Msa0989050-mRNA-1:exon:10167;Parent=Msa0989050-mRNA-1
chr6_4	exon	44252653	44252790	44252653	ID=Msa0989050-mRNA-1:exon:10168;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44248999	44249020	44248999	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44249230	44249424	44249230	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44249440	44249659	44249440	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44249687	44249900	44249687	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44250552	44250731	44250552	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44250841	44250848	44250841	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44250923	44251115	44250923	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44251164	44251382	44251164	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44251454	44251525	44251454	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44251627	44251722	44251627	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44251805	44251861	44251805	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44251950	44251992	44251950	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44252089	44252229	44252089	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44252549	44252556	44252549	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1
chr6_4	CDS	44252653	44252790	44252653	ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1

Gene Sequence

>Msa0989050

ATGGAAACAGTGCAAAAACCAATGGAAGAAGTATTTGTATCTTCTGATGAAGAGGAAATCAGAGAGGGAAATAATAATTTTGATGATAGTTTAGAAGAAGATATTGTTCATGAAGATGAAAAACCTCAGGTTGGAACTATATTTAGCTCTAAAGATGAACTTTTTGAGTATTACAAGAGTTATGCCCAATCTATGGGTTTTGGAGTTACTAAACTTAATGATGGGAAAAAATACTTTACTCTAGCATGTAGTCGTGGATCAAAGTATGCGAGTAAGGCGAAGAAGCTTTTGAACCCAAATCCTTTAACAAAAACCCAGTGCAAGGCTAGATTGAATGCATGTATTTCTTTAGATGGAACAGTTACTATTACAAAACTTTTTCTCGAGCATAATCATGATCTAATCCCTGACAAAGCACGCTATTTTAGAAGTAGCAAGTTAGAACTCAATGATCAAGCTGGAATAAATGTAAGCAGAAATTTTCGATCAATGGTTGTTGAAGCAAATGGCTATGAGAATATGACATTTGGTGAAAAGGACTGCAGAAACTATATAGATAAAGTGAGGAGACTACGACTTGGGGCTGGAGATGATGAGGCTATTCAAAATTATTTCGTTAAAATGCAAAAGCAAAATAGTCAGTTCTATTATACAGCATTGAAGCAATTTGTTGAACAATATGACAATGCATTGAGAGATAAAGTTGAAAAGGAAAACAACGCTGATTTTGGTTCATTTAATACAATGATAGCTTGTATAAGTCATTTTGGCTTTGAGTTGCAATTCCAGAAAGCATTCACCAATGCAAAATTCAAAGAATTTCAAGTGGAGTGTTTGAGGCACATCCTTTGTGTTCTTAAGTTAACAGGAAAAACAGAGTCATTGCCATCCTCTTATATTTTCTCTCAGTGGAGGAAGGATATAAGACGAAGACATACCCTTGTTAAATGTGGTTTTGATCATTTAGTTGGAAATGCTAAATTGCAAAGAGTTGATAAAGCATGTGCTGACTTTTATGAAGTTGCTTCTGAGGAAGTAAAAAATGAGTTTACCTCTAAAGAAGCATCCCCTGGCATTGTGGAAGATGGTTCAGTTCAAAATCAAGTGATTAAAATTCTTGACCCTATACCGACTCGAAGTAAAGGGCGTCCTCCTTCAAAAAGGAAGTCTTCTAAAGTTGACCAAATTGTGAAGAAAATTTCAAAAAAAAAGACCCAAAAAAGAAGTCAACAGAGTGGAAATCAACAAGAGGGCCTGTGTGCATCTAAAGTACAAGAGAGTGTTCAAGTAGTTGATGTAGTTGGCACACAAGAGAGTGTTCAAGGGGAACAAATTAGTTTTGGGAGGAATGGACATGGTGGTGTAAATAATTTAGCTCCCTTCAATCCAAATTCAATACTTATGAGTGAAGTAAATCAGGTTCCATTTTATTCTCAAGTCATGAATCATGGTGTTTCCTATTTTGAATTGTTACAGGCACAACACCATGTGAATGATCTGTCGTCGTCATCAATAACACGGCACTGCTGCTGCTGTCATGTGCTGGACTTTTGGTTTGGGCTTGTTGGCCTCCTTGGCAGCAAAGGTTTTAAGTCTGGGGGAACTGCTGCATCTGTCAAGTGCTTGACAAGTTTTGGTTTGGCCGTCATGTGCTTGACAGGCTGCATTAAACTAGTATTTCATGTTCCTTTTGGGCCTGCAAATTGTTGTCAGCTAGAACTTGTTCATCAGGGTTTTCATTTAAATGGATTAAAACATGAAAATAAGATTTCAAAAGGGAAGCCTGGAACTGTTTTAGTTAGATAA

Protein sequence

>Msa0989050

METVQKPMEEVFVSSDEEEIREGNNNFDDSLEEDIVHEDEKPQVGTIFSSKDELFEYYKSYAQSMGFGVTKLNDGKKYFTLACSRGSKYASKAKKLLNPNPLTKTQCKARLNACISLDGTVTITKLFLEHNHDLIPDKARYFRSSKLELNDQAGINVSRNFRSMVVEANGYENMTFGEKDCRNYIDKVRRLRLGAGDDEAIQNYFVKMQKQNSQFYYTALKQFVEQYDNALRDKVEKENNADFGSFNTMIACISHFGFELQFQKAFTNAKFKEFQVECLRHILCVLKLTGKTESLPSSYIFSQWRKDIRRRHTLVKCGFDHLVGNAKLQRVDKACADFYEVASEEVKNEFTSKEASPGIVEDGSVQNQVIKILDPIPTRSKGRPPSKRKSSKVDQIVKKISKKKTQKRSQQSGNQQEGLCASKVQESVQVVDVVGTQESVQGEQISFGRNGHGGVNNLAPFNPNSILMSEVNQVPFYSQVMNHGVSYFELLQAQHHVNDLSSSSITRHCCCCHVLDFWFGLVGLLGSKGFKSGGTAASVKCLTSFGLAVMCLTGCIKLVFHVPFGPANCCQLELVHQGFHLNGLKHENKISKGKPGTVLVR*