Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989050 | GAU40839.1 | 48.518 | 371 | 86 | 9 | 218 | 497 | 469 | 825 | 4.09e-92 | 312 |
| Msa0989050 | GAU40839.1 | 61.607 | 224 | 70 | 3 | 8 | 217 | 30 | 251 | 6.07e-82 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989050 | sp|Q6NQJ7|FRS4_ARATH | 30.556 | 216 | 134 | 7 | 48 | 251 | 3 | 214 | 9.74e-19 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989050 | A0A2Z6P9Q3 | 48.518 | 371 | 86 | 9 | 218 | 497 | 469 | 825 | 1.95e-92 | 312 |
| Msa0989050 | A0A2Z6P9Q3 | 61.607 | 224 | 70 | 3 | 8 | 217 | 30 | 251 | 2.90e-82 | 285 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0989050 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989050 | MtrunA17_Chr2g0296781 | 70.811 | 185 | 40 | 2 | 48 | 218 | 3 | 187 | 1.25e-81 | 271 |
| Msa0989050 | MtrunA17_Chr2g0296781 | 45.687 | 313 | 80 | 10 | 218 | 441 | 404 | 715 | 5.81e-57 | 204 |
| Msa0989050 | MtrunA17_Chr6g0477261 | 45.070 | 355 | 95 | 8 | 218 | 473 | 293 | 646 | 5.08e-74 | 249 |
| Msa0989050 | MtrunA17_Chr6g0477261 | 86.301 | 73 | 10 | 0 | 146 | 218 | 4 | 76 | 8.41e-34 | 136 |
| Msa0989050 | MtrunA17_Chr1g0196541 | 39.130 | 368 | 102 | 9 | 218 | 503 | 404 | 731 | 9.60e-61 | 214 |
| Msa0989050 | MtrunA17_Chr1g0196541 | 53.552 | 183 | 71 | 2 | 48 | 216 | 3 | 185 | 7.56e-54 | 195 |
| Msa0989050 | MtrunA17_Chr6g0476441 | 44.737 | 266 | 88 | 6 | 273 | 480 | 25 | 289 | 2.40e-52 | 181 |
| Msa0989050 | MtrunA17_Chr6g0476431 | 58.140 | 86 | 31 | 1 | 48 | 128 | 3 | 88 | 5.80e-28 | 107 |
| Msa0989050 | MtrunA17_Chr5g0441581 | 34.653 | 202 | 118 | 6 | 28 | 217 | 15 | 214 | 8.23e-23 | 103 |
| Msa0989050 | MtrunA17_Chr5g0441581 | 49.296 | 71 | 36 | 0 | 218 | 288 | 432 | 502 | 1.89e-12 | 70.5 |
| Msa0989050 | MtrunA17_Chr6g0451441 | 30.693 | 202 | 112 | 8 | 10 | 189 | 52 | 247 | 6.21e-16 | 80.9 |
| Msa0989050 | MtrunA17_Chr2g0329031 | 27.542 | 236 | 146 | 6 | 48 | 272 | 20 | 241 | 1.64e-15 | 80.1 |
| Msa0989050 | MtrunA17_Chr1g0207551 | 27.074 | 229 | 149 | 5 | 39 | 251 | 31 | 257 | 1.01e-13 | 74.7 |
| Msa0989050 | MtrunA17_Chr2g0291581 | 27.189 | 217 | 144 | 6 | 42 | 250 | 71 | 281 | 1.51e-13 | 73.9 |
| Msa0989050 | MtrunA17_Chr3g0077731 | 46.296 | 108 | 45 | 4 | 346 | 441 | 1 | 107 | 7.60e-13 | 65.5 |
| Msa0989050 | MtrunA17_Chr7g0258861 | 25.100 | 251 | 156 | 8 | 39 | 262 | 7 | 252 | 1.35e-12 | 68.9 |
| Msa0989050 | MtrunA17_Chr8g0363841 | 25.980 | 204 | 129 | 5 | 38 | 219 | 10 | 213 | 6.41e-11 | 65.5 |
| Msa0989050 | MtrunA17_Chr5g0448761 | 26.733 | 202 | 124 | 7 | 39 | 217 | 57 | 257 | 6.72e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989050 | AT1G76320.1 | 30.556 | 216 | 134 | 7 | 48 | 251 | 3 | 214 | 9.91e-20 | 94.0 |
| Msa0989050 | AT1G76320.4 | 30.556 | 216 | 134 | 7 | 48 | 251 | 3 | 214 | 9.91e-20 | 94.0 |
| Msa0989050 | AT1G76320.2 | 30.556 | 216 | 134 | 7 | 48 | 251 | 3 | 214 | 1.07e-19 | 94.0 |
| Msa0989050 | AT1G76320.3 | 30.556 | 216 | 134 | 7 | 48 | 251 | 3 | 214 | 1.27e-19 | 93.6 |
| Msa0989050 | AT4G15090.1 | 27.660 | 235 | 143 | 9 | 39 | 251 | 48 | 277 | 2.42e-15 | 80.1 |
| Msa0989050 | AT4G15090.5 | 27.660 | 235 | 143 | 9 | 39 | 251 | 48 | 277 | 2.42e-15 | 80.1 |
| Msa0989050 | AT4G15090.3 | 27.660 | 235 | 143 | 9 | 39 | 251 | 48 | 277 | 2.42e-15 | 80.1 |
| Msa0989050 | AT4G15090.2 | 27.660 | 235 | 143 | 9 | 39 | 251 | 48 | 277 | 2.42e-15 | 80.1 |
| Msa0989050 | AT4G15090.4 | 27.660 | 235 | 143 | 9 | 39 | 251 | 48 | 277 | 2.42e-15 | 80.1 |
| Msa0989050 | AT4G38180.1 | 25.000 | 216 | 139 | 6 | 25 | 218 | 56 | 270 | 8.02e-11 | 65.5 |
Find 83 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCATTGGTGAATGCTTTC+TGG | 0.174694 | 6_4:-44250686 | None:intergenic |
| AAGGAAAACAACGCTGATTT+TGG | 0.179833 | 6_4:+44250609 | Msa0989050:CDS |
| TCACTCATAAGTATTGAATT+TGG | 0.202186 | 6_4:-44251690 | None:intergenic |
| ATAGCTTGTATAAGTCATTT+TGG | 0.235588 | 6_4:+44250648 | Msa0989050:CDS |
| CAAGAGTTATGCCCAATCTA+TGG | 0.242427 | 6_4:+44249381 | Msa0989050:CDS |
| AATGCATGTATTTCTTTAGA+TGG | 0.249459 | 6_4:+44249556 | Msa0989050:CDS |
| CTTTGTGTTCTTAAGTTAAC+AGG | 0.271995 | 6_4:+44250930 | Msa0989050:CDS |
| CTAAAATAGCGTGCTTTGTC+AGG | 0.272247 | 6_4:-44249628 | None:intergenic |
| CTAGTATTTCATGTTCCTTT+TGG | 0.276527 | 6_4:+44252656 | Msa0989050:CDS |
| CCTTTACTTCGAGTCGGTAT+AGG | 0.287148 | 6_4:-44251254 | None:intergenic |
| TATGCCCAATCTATGGGTTT+TGG | 0.292447 | 6_4:+44249388 | Msa0989050:CDS |
| GTCAAGTGCTTGACAAGTTT+TGG | 0.299935 | 6_4:+44252184 | Msa0989050:CDS |
| GCTGTCATGTGCTGGACTTT+TGG | 0.312340 | 6_4:+44252101 | Msa0989050:CDS |
| TATCTAACTAAAACAGTTCC+AGG | 0.321980 | 6_4:-44252767 | None:intergenic |
| CTGCTGCTGCTGTCATGTGC+TGG | 0.324880 | 6_4:+44252093 | Msa0989050:CDS |
| GCCAGGGGATGCTTCTTTAG+AGG | 0.353219 | 6_4:-44251183 | None:intergenic |
| TTTGGGCTTGTTGGCCTCCT+TGG | 0.358635 | 6_4:+44252124 | Msa0989050:CDS |
| TCAGCTAGAACTTGTTCATC+AGG | 0.360631 | 6_4:+44252694 | Msa0989050:CDS |
| CTTTACTTCGAGTCGGTATA+GGG | 0.362130 | 6_4:-44251253 | None:intergenic |
| TACCTGTAACAATTCAAAAT+AGG | 0.379552 | 6_4:-44251842 | None:intergenic |
| TTCATGACTTGAGAATAAAA+TGG | 0.385023 | 6_4:-44251808 | None:intergenic |
| TCTAGCTGACAACAATTTGC+AGG | 0.385340 | 6_4:-44252680 | None:intergenic |
| TAACTCCAAAACCCATAGAT+TGG | 0.409903 | 6_4:-44249393 | None:intergenic |
| AAGTGAGGAGACTACGACTT+GGG | 0.414907 | 6_4:+44249809 | Msa0989050:CDS |
| CATGAAAATAAGATTTCAAA+AGG | 0.415528 | 6_4:+44252740 | Msa0989050:CDS |
| AAGGGCGTCCTCCTTCAAAA+AGG | 0.415773 | 6_4:+44251273 | Msa0989050:CDS |
| ACTTATGAGTGAAGTAAATC+AGG | 0.421958 | 6_4:+44251701 | Msa0989050:CDS |
| TGGATCAAAGTATGCGAGTA+AGG | 0.423922 | 6_4:+44249477 | Msa0989050:CDS |
| AATTAAAGATATAGTGTTTG+AGG | 0.424835 | 6_4:+44250827 | Msa0989050:intron |
| CAACAATTTGCAGGCCCAAA+AGG | 0.437800 | 6_4:-44252671 | None:intergenic |
| TATTCTCAAGTCATGAATCA+TGG | 0.442758 | 6_4:+44251814 | Msa0989050:CDS |
| GTTGGCCTCCTTGGCAGCAA+AGG | 0.449561 | 6_4:+44252133 | Msa0989050:CDS |
| AAGTATTGAATTTGGATTGA+AGG | 0.452798 | 6_4:-44251682 | None:intergenic |
| CATTCAATCTAGCCTTGCAC+TGG | 0.454810 | 6_4:-44249537 | None:intergenic |
| AACTCCAAAACCCATAGATT+GGG | 0.455626 | 6_4:-44249392 | None:intergenic |
| GAATATGACATTTGGTGAAA+AGG | 0.456326 | 6_4:+44249765 | Msa0989050:CDS |
| GTTCAAGTAGTTGATGTAGT+TGG | 0.457215 | 6_4:+44251484 | Msa0989050:CDS |
| TTGGCCGTCATGTGCTTGAC+AGG | 0.462181 | 6_4:+44252208 | Msa0989050:CDS |
| GGCTATGAGAATATGACATT+TGG | 0.466582 | 6_4:+44249757 | Msa0989050:CDS |
| ACTTAAAACCTTTGCTGCCA+AGG | 0.468326 | 6_4:-44252141 | None:intergenic |
| AAGATTTCAAAAGGGAAGCC+TGG | 0.468615 | 6_4:+44252749 | Msa0989050:CDS |
| ATTGAGAGATAAAGTTGAAA+AGG | 0.468812 | 6_4:+44250590 | Msa0989050:CDS |
| CCACTGAGAGAAAATATAAG+AGG | 0.477796 | 6_4:-44250973 | None:intergenic |
| AGTATTGAATTTGGATTGAA+GGG | 0.484124 | 6_4:-44251681 | None:intergenic |
| GAACCATCTTCCACAATGCC+AGG | 0.487132 | 6_4:-44251200 | None:intergenic |
| CTATACCGACTCGAAGTAAA+GGG | 0.496353 | 6_4:+44251255 | Msa0989050:CDS |
| TCCCCTGGCATTGTGGAAGA+TGG | 0.500694 | 6_4:+44251197 | Msa0989050:CDS |
| AAGAGTTATGCCCAATCTAT+GGG | 0.502102 | 6_4:+44249382 | Msa0989050:CDS |
| CCTATACCGACTCGAAGTAA+AGG | 0.502755 | 6_4:+44251254 | Msa0989050:CDS |
| ACCTCTAAAGAAGCATCCCC+TGG | 0.505424 | 6_4:+44251182 | Msa0989050:CDS |
| AGGAGACTACGACTTGGGGC+TGG | 0.514634 | 6_4:+44249814 | Msa0989050:CDS |
| ATTTGTATCTTCTGATGAAG+AGG | 0.520293 | 6_4:+44249240 | Msa0989050:CDS |
| TCAATGGTTGTTGAAGCAAA+TGG | 0.534602 | 6_4:+44249736 | Msa0989050:CDS |
| CAGCTAGAACTTGTTCATCA+GGG | 0.536631 | 6_4:+44252695 | Msa0989050:CDS |
| ATTCAAAGAATTTCAAGTGG+AGG | 0.539575 | 6_4:+44250710 | Msa0989050:CDS |
| TAAAATAGCGTGCTTTGTCA+GGG | 0.562727 | 6_4:-44249627 | None:intergenic |
| TTAGAACTCAATGATCAAGC+TGG | 0.567016 | 6_4:+44249688 | Msa0989050:CDS |
| AACCATCTTCCACAATGCCA+GGG | 0.580735 | 6_4:-44251199 | None:intergenic |
| TGAGAGAAAATATAAGAGGA+TGG | 0.581159 | 6_4:-44250969 | None:intergenic |
| AGACATACCCTTGTTAAATG+TGG | 0.581997 | 6_4:+44251014 | Msa0989050:CDS |
| AGAAGCATCCCCTGGCATTG+TGG | 0.590947 | 6_4:+44251190 | Msa0989050:CDS |
| ATGAAAATAAGATTTCAAAA+GGG | 0.592167 | 6_4:+44252741 | Msa0989050:CDS |
| ATTCAATCTAGCCTTGCACT+GGG | 0.599186 | 6_4:-44249536 | None:intergenic |
| GATCAAAACCACATTTAACA+AGG | 0.611615 | 6_4:-44251022 | None:intergenic |
| GATGAAGAGGAAATCAGAGA+GGG | 0.625109 | 6_4:+44249253 | Msa0989050:CDS |
| ACTTGGGGCTGGAGATGATG+AGG | 0.638420 | 6_4:+44249825 | Msa0989050:CDS |
| AGTGAGGAGACTACGACTTG+GGG | 0.641932 | 6_4:+44249810 | Msa0989050:CDS |
| AAAATTCAAAGAATTTCAAG+TGG | 0.644675 | 6_4:+44250707 | Msa0989050:CDS |
| ATCAAAACCACATTTAACAA+GGG | 0.648419 | 6_4:-44251021 | None:intergenic |
| CTAAATATAGTTCCAACCTG+AGG | 0.648571 | 6_4:-44249331 | None:intergenic |
| AAAGTGAGGAGACTACGACT+TGG | 0.649574 | 6_4:+44249808 | Msa0989050:CDS |
| GAAACTATATAGATAAAGTG+AGG | 0.649765 | 6_4:+44249794 | Msa0989050:CDS |
| TTTGGGAGGAATGGACATGG+TGG | 0.651520 | 6_4:+44251642 | Msa0989050:CDS |
| TTTACTCTAGCATGTAGTCG+TGG | 0.653028 | 6_4:+44249457 | Msa0989050:CDS |
| ACCATCTTCCACAATGCCAG+GGG | 0.654020 | 6_4:-44251198 | None:intergenic |
| GGACGCCCTTTACTTCGAGT+CGG | 0.664200 | 6_4:-44251260 | None:intergenic |
| ACAGAGTGGAAATCAACAAG+AGG | 0.665527 | 6_4:+44251361 | Msa0989050:CDS |
| CTGTTAACTTAAGAACACAA+AGG | 0.666537 | 6_4:-44250929 | None:intergenic |
| TAAAACCTTTGCTGCCAAGG+AGG | 0.671942 | 6_4:-44252138 | None:intergenic |
| CTTGTACTTTAGATGCACAC+AGG | 0.674948 | 6_4:-44251456 | None:intergenic |
| GAAACCTGTCAAGCACATGA+CGG | 0.675273 | 6_4:-44252212 | None:intergenic |
| TGATGAAGAGGAAATCAGAG+AGG | 0.679814 | 6_4:+44249252 | Msa0989050:CDS |
| ACGACGACAGATCATTCACA+TGG | 0.708827 | 6_4:-44251958 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGATTTATCATATAA+TGG | - | chr6_4:44249081-44249100 | None:intergenic | 10.0% |
| !!! | TTTTTAATTTATAGCATTAG+TGG | + | chr6_4:44249210-44249229 | Msa0989050:intron | 15.0% |
| !!! | TTTAATACGTATATGTTTTT+AGG | + | chr6_4:44251605-44251624 | Msa0989050:intron | 15.0% |
| !!! | TTAATACGTATATGTTTTTA+GGG | + | chr6_4:44251606-44251625 | Msa0989050:intron | 15.0% |
| !! | ATGAAAATAAGATTTCAAAA+GGG | + | chr6_4:44252741-44252760 | Msa0989050:CDS | 15.0% |
| !! | TAAGTTAACTACCTTAAATT+GGG | + | chr6_4:44249022-44249041 | Msa0989050:intron | 20.0% |
| !!! | TTTTGATATTGAAACTGATT+TGG | + | chr6_4:44249110-44249129 | Msa0989050:intron | 20.0% |
| !! | TAAGCATTAAATACAAAACT+AGG | - | chr6_4:44249141-44249160 | None:intergenic | 20.0% |
| !!! | AAATTCTTTGAATTTTGCAT+TGG | - | chr6_4:44250703-44250722 | None:intergenic | 20.0% |
| !! | AAAATTCAAAGAATTTCAAG+TGG | + | chr6_4:44250707-44250726 | Msa0989050:CDS | 20.0% |
| !! | AATTAAAGATATAGTGTTTG+AGG | + | chr6_4:44250827-44250846 | Msa0989050:intron | 20.0% |
| !!! | AATTCAAAGGTATTTTATGT+AGG | + | chr6_4:44250901-44250920 | Msa0989050:intron | 20.0% |
| !!! | CATTTTAAACAAATCATCAT+CGG | - | chr6_4:44251129-44251148 | None:intergenic | 20.0% |
| !!! | ATGATGATTTGTTTAAAATG+AGG | + | chr6_4:44251129-44251148 | Msa0989050:intron | 20.0% |
| !!! | ATTTGTTTAAAATGAGGAAT+TGG | + | chr6_4:44251135-44251154 | Msa0989050:intron | 20.0% |
| !!! | TTGAAATTTTCTTCACAATT+TGG | - | chr6_4:44251316-44251335 | None:intergenic | 20.0% |
| !! | GTCTAATATTCAATACTTAA+TGG | + | chr6_4:44251428-44251447 | Msa0989050:intron | 20.0% |
| !!! | TAATACGTATATGTTTTTAG+GGG | + | chr6_4:44251607-44251626 | Msa0989050:intron | 20.0% |
| !! | TTTCTGTAACATTAATATTG+TGG | + | chr6_4:44251753-44251772 | Msa0989050:intron | 20.0% |
| !!! | AAGTATTTTCCATGTTATTT+AGG | + | chr6_4:44251783-44251802 | Msa0989050:intron | 20.0% |
| !!! | ATTTTTAAATCTGCTATGTA+AGG | + | chr6_4:44252527-44252546 | Msa0989050:intron | 20.0% |
| !! | CATGAAAATAAGATTTCAAA+AGG | + | chr6_4:44252740-44252759 | Msa0989050:CDS | 20.0% |
| !! | TTTAAGGTAGTTAACTTACT+TGG | - | chr6_4:44249020-44249039 | None:intergenic | 25.0% |
| ! | GTAAGTTAACTACCTTAAAT+TGG | + | chr6_4:44249021-44249040 | Msa0989050:intron | 25.0% |
| ! | AGTAACAAAAATACAGATGA+TGG | + | chr6_4:44249424-44249443 | Msa0989050:intron | 25.0% |
| ! | GTAACAAAAATACAGATGAT+GGG | + | chr6_4:44249425-44249444 | Msa0989050:intron | 25.0% |
| ! | AATGCATGTATTTCTTTAGA+TGG | + | chr6_4:44249556-44249575 | Msa0989050:CDS | 25.0% |
| !!! | TTTTAGAAGTAGCAAGTTTT+TGG | + | chr6_4:44249645-44249664 | Msa0989050:intron | 25.0% |
| ! | GAAACTATATAGATAAAGTG+AGG | + | chr6_4:44249794-44249813 | Msa0989050:CDS | 25.0% |
| ! | TTTGTGGCATATAATGAAAA+AGG | + | chr6_4:44250251-44250270 | Msa0989050:intron | 25.0% |
| !! | TTGAACTTCATGATAATGAA+TGG | + | chr6_4:44250397-44250416 | Msa0989050:intron | 25.0% |
| ! | TATTTGATGAAAGAAATCGT+TGG | + | chr6_4:44250430-44250449 | Msa0989050:intron | 25.0% |
| ! | ATTTGATGAAAGAAATCGTT+GGG | + | chr6_4:44250431-44250450 | Msa0989050:intron | 25.0% |
| ! | ATTGAGAGATAAAGTTGAAA+AGG | + | chr6_4:44250590-44250609 | Msa0989050:CDS | 25.0% |
| !!! | ATAGCTTGTATAAGTCATTT+TGG | + | chr6_4:44250648-44250667 | Msa0989050:CDS | 25.0% |
| !! | TGTTGTTTGTTTCAATTCAA+AGG | + | chr6_4:44250888-44250907 | Msa0989050:intron | 25.0% |
| ! | ATCAAAACCACATTTAACAA+GGG | - | chr6_4:44251024-44251043 | None:intergenic | 25.0% |
| ! | AATATTCAATACTTAATGGC+AGG | + | chr6_4:44251432-44251451 | Msa0989050:intron | 25.0% |
| ! | ATATTCAATACTTAATGGCA+GGG | + | chr6_4:44251433-44251452 | Msa0989050:intron | 25.0% |
| !!! | AATACGTATATGTTTTTAGG+GGG | + | chr6_4:44251608-44251627 | Msa0989050:intron | 25.0% |
| !! | AGTATTGAATTTGGATTGAA+GGG | - | chr6_4:44251684-44251703 | None:intergenic | 25.0% |
| !!! | AAGTATTGAATTTGGATTGA+AGG | - | chr6_4:44251685-44251704 | None:intergenic | 25.0% |
| !!! | TCACTCATAAGTATTGAATT+TGG | - | chr6_4:44251693-44251712 | None:intergenic | 25.0% |
| ! | AAAATGGAACCTAAATAACA+TGG | - | chr6_4:44251795-44251814 | None:intergenic | 25.0% |
| ! | TTCATGACTTGAGAATAAAA+TGG | - | chr6_4:44251811-44251830 | None:intergenic | 25.0% |
| !!! | TTCCTATTTTGAATTGTTAC+AGG | + | chr6_4:44251840-44251859 | Msa0989050:CDS | 25.0% |
| ! | TACCTGTAACAATTCAAAAT+AGG | - | chr6_4:44251845-44251864 | None:intergenic | 25.0% |
| ! | TATGTCTAACGTTTAAGAAT+TGG | + | chr6_4:44252441-44252460 | Msa0989050:intron | 25.0% |
| !! | TAGTATTTCATGTTCCTTTT+GGG | + | chr6_4:44252657-44252676 | Msa0989050:CDS | 25.0% |
| ATTTGTATCTTCTGATGAAG+AGG | + | chr6_4:44249240-44249259 | Msa0989050:CDS | 30.0% | |
| ! | GGGTTTTTGTTAAAGGATTT+GGG | - | chr6_4:44249519-44249538 | None:intergenic | 30.0% |
| ! | TGGGTTTTTGTTAAAGGATT+TGG | - | chr6_4:44249520-44249539 | None:intergenic | 30.0% |
| ! | AAGCAGAAATTTTCGATCAA+TGG | + | chr6_4:44249720-44249739 | Msa0989050:CDS | 30.0% |
| ! | GAATATGACATTTGGTGAAA+AGG | + | chr6_4:44249765-44249784 | Msa0989050:CDS | 30.0% |
| !!! | TCGCTTACGAAATGTTTTTT+GGG | + | chr6_4:44249924-44249943 | Msa0989050:intron | 30.0% |
| ATCCATGAAAAATGCAATTG+CGG | + | chr6_4:44250197-44250216 | Msa0989050:intron | 30.0% | |
| !! | AAGTATCTACTTAGCTTTTC+TGG | - | chr6_4:44250279-44250298 | None:intergenic | 30.0% |
| TTTGAGTAAGAGTGATTTCA+TGG | + | chr6_4:44250347-44250366 | Msa0989050:intron | 30.0% | |
| ! | TCATGATAATGAATGGTTGA+AGG | + | chr6_4:44250404-44250423 | Msa0989050:intron | 30.0% |
| ! | CATGATAATGAATGGTTGAA+GGG | + | chr6_4:44250405-44250424 | Msa0989050:intron | 30.0% |
| ! | ATGATAATGAATGGTTGAAG+GGG | + | chr6_4:44250406-44250425 | Msa0989050:intron | 30.0% |
| !!! | AGTATGAACTCGTTTTTTGA+TGG | + | chr6_4:44250513-44250532 | Msa0989050:intron | 30.0% |
| ! | ATTCAAAGAATTTCAAGTGG+AGG | + | chr6_4:44250710-44250729 | Msa0989050:CDS | 30.0% |
| CTGTTAACTTAAGAACACAA+AGG | - | chr6_4:44250932-44250951 | None:intergenic | 30.0% | |
| CTTTGTGTTCTTAAGTTAAC+AGG | + | chr6_4:44250930-44250949 | Msa0989050:CDS | 30.0% | |
| TGAGAGAAAATATAAGAGGA+TGG | - | chr6_4:44250972-44250991 | None:intergenic | 30.0% | |
| GATCAAAACCACATTTAACA+AGG | - | chr6_4:44251025-44251044 | None:intergenic | 30.0% | |
| !!! | TGTGGTTTTGATCATTTAGT+TGG | + | chr6_4:44251032-44251051 | Msa0989050:CDS | 30.0% |
| TAAAATGAGGAATTGGATCA+AGG | + | chr6_4:44251142-44251161 | Msa0989050:intron | 30.0% | |
| ! | TTAGAAGACTTCCTTTTTGA+AGG | - | chr6_4:44251287-44251306 | None:intergenic | 30.0% |
| !!! | ACTCTGTTGACTTCTTTTTT+GGG | - | chr6_4:44251348-44251367 | None:intergenic | 30.0% |
| ACTTATGAGTGAAGTAAATC+AGG | + | chr6_4:44251701-44251720 | Msa0989050:CDS | 30.0% | |
| TATTCTCAAGTCATGAATCA+TGG | + | chr6_4:44251814-44251833 | Msa0989050:CDS | 30.0% | |
| ! | ACAACATAGACTTTTGCATT+AGG | + | chr6_4:44252259-44252278 | Msa0989050:intron | 30.0% |
| ! | CAACATAGACTTTTGCATTA+GGG | + | chr6_4:44252260-44252279 | Msa0989050:intron | 30.0% |
| ! | AACATAGACTTTTGCATTAG+GGG | + | chr6_4:44252261-44252280 | Msa0989050:intron | 30.0% |
| TAGTTACTGTTAGTAGTGTT+AGG | + | chr6_4:44252297-44252316 | Msa0989050:intron | 30.0% | |
| AGTTACTGTTAGTAGTGTTA+GGG | + | chr6_4:44252298-44252317 | Msa0989050:intron | 30.0% | |
| ! | TATATACGATACCTTGGTTT+TGG | + | chr6_4:44252355-44252374 | Msa0989050:intron | 30.0% |
| !!! | TTTCTGGTTTTATCATCTTG+TGG | + | chr6_4:44252625-44252644 | Msa0989050:intron | 30.0% |
| ! | GAACATGAAATACTAGTTTC+TGG | - | chr6_4:44252652-44252671 | None:intergenic | 30.0% |
| ! | CTAGTATTTCATGTTCCTTT+TGG | + | chr6_4:44252656-44252675 | Msa0989050:CDS | 30.0% |
| ! | CATCAGGGTTTTCATTTAAA+TGG | + | chr6_4:44252710-44252729 | Msa0989050:CDS | 30.0% |
| TATCTAACTAAAACAGTTCC+AGG | - | chr6_4:44252770-44252789 | None:intergenic | 30.0% | |
| ATGGGTGATTACCCAATTTA+AGG | - | chr6_4:44249036-44249055 | None:intergenic | 35.0% | |
| !! | GTAGTTTGATCAGTTGATGA+GGG | - | chr6_4:44249059-44249078 | None:intergenic | 35.0% |
| TCATGAAGATGAAAAACCTC+AGG | + | chr6_4:44249315-44249334 | Msa0989050:CDS | 35.0% | |
| CTAAATATAGTTCCAACCTG+AGG | - | chr6_4:44249334-44249353 | None:intergenic | 35.0% | |
| AAGAGTTATGCCCAATCTAT+GGG | + | chr6_4:44249382-44249401 | Msa0989050:CDS | 35.0% | |
| AACTCCAAAACCCATAGATT+GGG | - | chr6_4:44249395-44249414 | None:intergenic | 35.0% | |
| TAACTCCAAAACCCATAGAT+TGG | - | chr6_4:44249396-44249415 | None:intergenic | 35.0% | |
| ! | TTGCACTGGGTTTTTGTTAA+AGG | - | chr6_4:44249526-44249545 | None:intergenic | 35.0% |
| TTTAACAAAAACCCAGTGCA+AGG | + | chr6_4:44249525-44249544 | Msa0989050:CDS | 35.0% | |
| TAAAATAGCGTGCTTTGTCA+GGG | - | chr6_4:44249630-44249649 | None:intergenic | 35.0% | |
| ! | TTTTGGATCCTCGTTTGAAA+AGG | + | chr6_4:44249662-44249681 | Msa0989050:intron | 35.0% |
| TTAGAACTCAATGATCAAGC+TGG | + | chr6_4:44249688-44249707 | Msa0989050:CDS | 35.0% | |
| TCAATGGTTGTTGAAGCAAA+TGG | + | chr6_4:44249736-44249755 | Msa0989050:CDS | 35.0% | |
| GGCTATGAGAATATGACATT+TGG | + | chr6_4:44249757-44249776 | Msa0989050:CDS | 35.0% | |
| !!! | GTCGCTTACGAAATGTTTTT+TGG | + | chr6_4:44249923-44249942 | Msa0989050:intron | 35.0% |
| ! | AGGGCTGCATATGAATATTT+TGG | + | chr6_4:44249961-44249980 | Msa0989050:intron | 35.0% |
| ATGGTTTACTCCAACAAATG+GGG | - | chr6_4:44250043-44250062 | None:intergenic | 35.0% | |
| GATGGTTTACTCCAACAAAT+GGG | - | chr6_4:44250044-44250063 | None:intergenic | 35.0% | |
| TGATGGTTTACTCCAACAAA+TGG | - | chr6_4:44250045-44250064 | None:intergenic | 35.0% | |
| TTTGTTGGAGTAAACCATCA+TGG | + | chr6_4:44250045-44250064 | Msa0989050:intron | 35.0% | |
| AGGATACTAAGTCCTTTACT+TGG | + | chr6_4:44250106-44250125 | Msa0989050:intron | 35.0% | |
| TGGTTGGAATAACCAAGTAA+AGG | - | chr6_4:44250121-44250140 | None:intergenic | 35.0% | |
| TTACTTGGTTATTCCAACCA+TGG | + | chr6_4:44250121-44250140 | Msa0989050:intron | 35.0% | |
| TGATCGGTAATTATGGCATT+TGG | - | chr6_4:44250171-44250190 | None:intergenic | 35.0% | |
| TCTGTCTTGATCGGTAATTA+TGG | - | chr6_4:44250178-44250197 | None:intergenic | 35.0% | |
| TTTCATGGATCTGTCTTGAT+CGG | - | chr6_4:44250187-44250206 | None:intergenic | 35.0% | |
| ! | AACCGCAATTGCATTTTTCA+TGG | - | chr6_4:44250202-44250221 | None:intergenic | 35.0% |
| AGAGTGATTTCATGGAAAAG+TGG | + | chr6_4:44250355-44250374 | Msa0989050:intron | 35.0% | |
| GAGTGATTTCATGGAAAAGT+GGG | + | chr6_4:44250356-44250375 | Msa0989050:intron | 35.0% | |
| ! | ATATGTGAGAGACTCGTTTT+GGG | + | chr6_4:44250461-44250480 | Msa0989050:intron | 35.0% |
| !!! | AAGGAAAACAACGCTGATTT+TGG | + | chr6_4:44250609-44250628 | Msa0989050:CDS | 35.0% |
| !! | TCATACTTGCTTTGAGAGAT+TGG | + | chr6_4:44250752-44250771 | Msa0989050:intron | 35.0% |
| CTCAAAGTCTTTCTCATTGA+AGG | - | chr6_4:44250856-44250875 | None:intergenic | 35.0% | |
| CCACTGAGAGAAAATATAAG+AGG | - | chr6_4:44250976-44250995 | None:intergenic | 35.0% | |
| ! | CCTCTTATATTTTCTCTCAG+TGG | + | chr6_4:44250973-44250992 | Msa0989050:CDS | 35.0% |
| ! | CTTATATTTTCTCTCAGTGG+AGG | + | chr6_4:44250976-44250995 | Msa0989050:CDS | 35.0% |
| AGACATACCCTTGTTAAATG+TGG | + | chr6_4:44251014-44251033 | Msa0989050:CDS | 35.0% | |
| ! | CTTTTATGAAGTTGCTTCTG+AGG | + | chr6_4:44251094-44251113 | Msa0989050:CDS | 35.0% |
| !!! | CACTCTGTTGACTTCTTTTT+TGG | - | chr6_4:44251349-44251368 | None:intergenic | 35.0% |
| CAAAAAAGAAGTCAACAGAG+TGG | + | chr6_4:44251347-44251366 | Msa0989050:CDS | 35.0% | |
| ! | GTTCAAGTAGTTGATGTAGT+TGG | + | chr6_4:44251484-44251503 | Msa0989050:CDS | 35.0% |
| !! | TAGGGGGAACAAATTAGTTT+TGG | + | chr6_4:44251624-44251643 | Msa0989050:intron | 35.0% |
| !!! | AGGGGGAACAAATTAGTTTT+GGG | + | chr6_4:44251625-44251644 | Msa0989050:intron | 35.0% |
| !!! | CAAATTAGTTTTGGGAGGAA+TGG | + | chr6_4:44251633-44251652 | Msa0989050:CDS | 35.0% |
| ! | ATGTCGATTGTTCTCTTTGT+AGG | + | chr6_4:44251928-44251947 | Msa0989050:intron | 35.0% |
| ! | GTGAAGATTGTTCTTTTGCT+CGG | + | chr6_4:44252013-44252032 | Msa0989050:intron | 35.0% |
| ! | TTTCGTGTTTTTCCTTTGCT+AGG | + | chr6_4:44252067-44252086 | Msa0989050:intron | 35.0% |
| ! | TTCGTGTTTTTCCTTTGCTA+GGG | + | chr6_4:44252068-44252087 | Msa0989050:intron | 35.0% |
| AAAAGTCTATGTTGTCAAGG+AGG | - | chr6_4:44252254-44252273 | None:intergenic | 35.0% | |
| TGCAAAAGTCTATGTTGTCA+AGG | - | chr6_4:44252257-44252276 | None:intergenic | 35.0% | |
| ! | ACATAGACTTTTGCATTAGG+GGG | + | chr6_4:44252262-44252281 | Msa0989050:intron | 35.0% |
| !! | ACCAAGGTATCGTATATATG+CGG | - | chr6_4:44252353-44252372 | None:intergenic | 35.0% |
| CTAACGTTTAAGAATTGGAG+TGG | + | chr6_4:44252446-44252465 | Msa0989050:intron | 35.0% | |
| AGAATTGGAGTGGTATAATG+AGG | + | chr6_4:44252456-44252475 | Msa0989050:intron | 35.0% | |
| TCGATGAAATTTGTCTTCAC+AGG | + | chr6_4:44252494-44252513 | Msa0989050:intron | 35.0% | |
| CGATGAAATTTGTCTTCACA+GGG | + | chr6_4:44252495-44252514 | Msa0989050:intron | 35.0% | |
| TATGTAAGGCTGCATTGTAA+GGG | + | chr6_4:44252541-44252560 | Msa0989050:intron | 35.0% | |
| TCTGTACAATTCTCTGTTTC+TGG | + | chr6_4:44252609-44252628 | Msa0989050:intron | 35.0% | |
| !! | TTGATCAGTTGATGAGGGAT+GGG | - | chr6_4:44249054-44249073 | None:intergenic | 40.0% |
| !! | TTTGATCAGTTGATGAGGGA+TGG | - | chr6_4:44249055-44249074 | None:intergenic | 40.0% |
| ! | GGTAGTTTGATCAGTTGATG+AGG | - | chr6_4:44249060-44249079 | None:intergenic | 40.0% |
| TGATGAAGAGGAAATCAGAG+AGG | + | chr6_4:44249252-44249271 | Msa0989050:CDS | 40.0% | |
| GATGAAGAGGAAATCAGAGA+GGG | + | chr6_4:44249253-44249272 | Msa0989050:CDS | 40.0% | |
| GAAGATGAAAAACCTCAGGT+TGG | + | chr6_4:44249319-44249338 | Msa0989050:CDS | 40.0% | |
| CAAGAGTTATGCCCAATCTA+TGG | + | chr6_4:44249381-44249400 | Msa0989050:CDS | 40.0% | |
| ! | TATGCCCAATCTATGGGTTT+TGG | + | chr6_4:44249388-44249407 | Msa0989050:CDS | 40.0% |
| TTTACTCTAGCATGTAGTCG+TGG | + | chr6_4:44249457-44249476 | Msa0989050:CDS | 40.0% | |
| TGGATCAAAGTATGCGAGTA+AGG | + | chr6_4:44249477-44249496 | Msa0989050:CDS | 40.0% | |
| !! | ATTCAATCTAGCCTTGCACT+GGG | - | chr6_4:44249539-44249558 | None:intergenic | 40.0% |
| CTAAAATAGCGTGCTTTGTC+AGG | - | chr6_4:44249631-44249650 | None:intergenic | 40.0% | |
| ! | TCTAACCTCCTTTTCAAACG+AGG | - | chr6_4:44249673-44249692 | None:intergenic | 40.0% |
| ! | CATATGTGAGAGACTCGTTT+TGG | + | chr6_4:44250460-44250479 | Msa0989050:intron | 40.0% |
| ! | TTGCATTGGTGAATGCTTTC+TGG | - | chr6_4:44250689-44250708 | None:intergenic | 40.0% |
| !! | ACTTGCTTTGAGAGATTGGA+AGG | + | chr6_4:44250756-44250775 | Msa0989050:intron | 40.0% |
| ! | TATTTTCTCTCAGTGGAGGA+AGG | + | chr6_4:44250980-44250999 | Msa0989050:CDS | 40.0% |
| CTTTACTTCGAGTCGGTATA+GGG | - | chr6_4:44251256-44251275 | None:intergenic | 40.0% | |
| !! | CTATACCGACTCGAAGTAAA+GGG | + | chr6_4:44251255-44251274 | Msa0989050:CDS | 40.0% |
| !! | GAAGACTTCCTTTTTGAAGG+AGG | - | chr6_4:44251284-44251303 | None:intergenic | 40.0% |
| ACAGAGTGGAAATCAACAAG+AGG | + | chr6_4:44251361-44251380 | Msa0989050:CDS | 40.0% | |
| CTTGTACTTTAGATGCACAC+AGG | - | chr6_4:44251459-44251478 | None:intergenic | 40.0% | |
| !!! | GGGAACAAATTAGTTTTGGG+AGG | + | chr6_4:44251628-44251647 | Msa0989050:CDS | 40.0% |
| !!! | ATGTGCTGGACTTTTGGTTT+GGG | + | chr6_4:44252107-44252126 | Msa0989050:CDS | 40.0% |
| ACTTAAAACCTTTGCTGCCA+AGG | - | chr6_4:44252144-44252163 | None:intergenic | 40.0% | |
| !!! | GCAGCAAAGGTTTTAAGTCT+GGG | + | chr6_4:44252146-44252165 | Msa0989050:CDS | 40.0% |
| !!! | CAGCAAAGGTTTTAAGTCTG+GGG | + | chr6_4:44252147-44252166 | Msa0989050:CDS | 40.0% |
| !!! | AGCAAAGGTTTTAAGTCTGG+GGG | + | chr6_4:44252148-44252167 | Msa0989050:CDS | 40.0% |
| ! | GTCAAGTGCTTGACAAGTTT+TGG | + | chr6_4:44252184-44252203 | Msa0989050:CDS | 40.0% |
| !!! | GTGCTTGACAAGTTTTGGTT+TGG | + | chr6_4:44252189-44252208 | Msa0989050:CDS | 40.0% |
| GTGTTAGGGTGTATTCTGTT+TGG | + | chr6_4:44252312-44252331 | Msa0989050:intron | 40.0% | |
| CGTATATATGCGGCTACAAT+GGG | - | chr6_4:44252343-44252362 | None:intergenic | 40.0% | |
| TCGTATATATGCGGCTACAA+TGG | - | chr6_4:44252344-44252363 | None:intergenic | 40.0% | |
| ACACACGAAAACCAAAACCA+AGG | - | chr6_4:44252369-44252388 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGGTTTTCGTGTGT+TGG | + | chr6_4:44252369-44252388 | Msa0989050:intron | 40.0% |
| CTATGTAAGGCTGCATTGTA+AGG | + | chr6_4:44252540-44252559 | Msa0989050:intron | 40.0% | |
| TCATGCTACATGTTGAAGCT+TGG | + | chr6_4:44252565-44252584 | Msa0989050:intron | 40.0% | |
| ACATGTTGAAGCTTGGCATA+AGG | + | chr6_4:44252572-44252591 | Msa0989050:intron | 40.0% | |
| TCTAGCTGACAACAATTTGC+AGG | - | chr6_4:44252683-44252702 | None:intergenic | 40.0% | |
| ! | TCAGCTAGAACTTGTTCATC+AGG | + | chr6_4:44252694-44252713 | Msa0989050:CDS | 40.0% |
| ! | CAGCTAGAACTTGTTCATCA+GGG | + | chr6_4:44252695-44252714 | Msa0989050:CDS | 40.0% |
| AAGATTTCAAAAGGGAAGCC+TGG | + | chr6_4:44252749-44252768 | Msa0989050:CDS | 40.0% | |
| !! | CATTCAATCTAGCCTTGCAC+TGG | - | chr6_4:44249540-44249559 | None:intergenic | 45.0% |
| TGGATCCTCGTTTGAAAAGG+AGG | + | chr6_4:44249665-44249684 | Msa0989050:intron | 45.0% | |
| AAAGTGAGGAGACTACGACT+TGG | + | chr6_4:44249808-44249827 | Msa0989050:CDS | 45.0% | |
| AAGTGAGGAGACTACGACTT+GGG | + | chr6_4:44249809-44249828 | Msa0989050:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCATTTGT+TGG | + | chr6_4:44250030-44250049 | Msa0989050:intron | 45.0% |
| ACTCCAACAAATGGGGCAAA+AGG | - | chr6_4:44250036-44250055 | None:intergenic | 45.0% | |
| ! | ACAACACAGATTGGCCATGA+TGG | - | chr6_4:44250062-44250081 | None:intergenic | 45.0% |
| TCATGGCCAATCTGTGTTGT+TGG | + | chr6_4:44250062-44250081 | Msa0989050:intron | 45.0% | |
| ! | CATGGCCAATCTGTGTTGTT+GGG | + | chr6_4:44250063-44250082 | Msa0989050:intron | 45.0% |
| ! | CTGTGCTTTATTGTCGAAGG+AGG | + | chr6_4:44250086-44250105 | Msa0989050:intron | 45.0% |
| ! | ACCATCGATGACGAGCTTTT+GGG | - | chr6_4:44250230-44250249 | None:intergenic | 45.0% |
| AACGAGTCTCTCACATATGC+AGG | - | chr6_4:44250459-44250478 | None:intergenic | 45.0% | |
| AACCATCTTCCACAATGCCA+GGG | - | chr6_4:44251202-44251221 | None:intergenic | 45.0% | |
| CCTTTACTTCGAGTCGGTAT+AGG | - | chr6_4:44251257-44251276 | None:intergenic | 45.0% | |
| !! | CCTATACCGACTCGAAGTAA+AGG | + | chr6_4:44251254-44251273 | Msa0989050:CDS | 45.0% |
| !!! | AGTTTTGGGAGGAATGGACA+TGG | + | chr6_4:44251639-44251658 | Msa0989050:CDS | 45.0% |
| ACGACGACAGATCATTCACA+TGG | - | chr6_4:44251961-44251980 | None:intergenic | 45.0% | |
| !! | CATGTGCTGGACTTTTGGTT+TGG | + | chr6_4:44252106-44252125 | Msa0989050:CDS | 45.0% |
| !!! | GACTTTTGGTTTGGGCTTGT+TGG | + | chr6_4:44252115-44252134 | Msa0989050:CDS | 45.0% |
| TAAAACCTTTGCTGCCAAGG+AGG | - | chr6_4:44252141-44252160 | None:intergenic | 45.0% | |
| !!! | GGCAGCAAAGGTTTTAAGTC+TGG | + | chr6_4:44252145-44252164 | Msa0989050:CDS | 45.0% |
| GAAACCTGTCAAGCACATGA+CGG | - | chr6_4:44252215-44252234 | None:intergenic | 45.0% | |
| GTCATGTGCTTGACAGGTTT+CGG | + | chr6_4:44252214-44252233 | Msa0989050:intron | 45.0% | |
| GCCGCATATATACGATACCT+TGG | + | chr6_4:44252349-44252368 | Msa0989050:intron | 45.0% | |
| AAGACGTAACAGTTGTGGCT+AGG | - | chr6_4:44252398-44252417 | None:intergenic | 45.0% | |
| CGTACAAGACGTAACAGTTG+TGG | - | chr6_4:44252403-44252422 | None:intergenic | 45.0% | |
| CAACAATTTGCAGGCCCAAA+AGG | - | chr6_4:44252674-44252693 | None:intergenic | 45.0% | |
| AGTGAGGAGACTACGACTTG+GGG | + | chr6_4:44249810-44249829 | Msa0989050:CDS | 50.0% | |
| TTTGGGCAGATGCGAGATGT+AGG | + | chr6_4:44249941-44249960 | Msa0989050:intron | 50.0% | |
| TTGGGCAGATGCGAGATGTA+GGG | + | chr6_4:44249942-44249961 | Msa0989050:intron | 50.0% | |
| CACAGCCCAACAACACAGAT+TGG | - | chr6_4:44250071-44250090 | None:intergenic | 50.0% | |
| ! | GGGCTGTGCTTTATTGTCGA+AGG | + | chr6_4:44250083-44250102 | Msa0989050:intron | 50.0% |
| GCATGCACTCTAACCATGGT+TGG | - | chr6_4:44250137-44250156 | None:intergenic | 50.0% | |
| CCATGCATGCACTCTAACCA+TGG | - | chr6_4:44250141-44250160 | None:intergenic | 50.0% | |
| CCATGGTTAGAGTGCATGCA+TGG | + | chr6_4:44250138-44250157 | Msa0989050:intron | 50.0% | |
| TCCCAAAAGCTCGTCATCGA+TGG | + | chr6_4:44250226-44250245 | Msa0989050:intron | 50.0% | |
| ! | CACCATCGATGACGAGCTTT+TGG | - | chr6_4:44250231-44250250 | None:intergenic | 50.0% |
| CTCGTCATCGATGGTGTTTG+TGG | + | chr6_4:44250235-44250254 | Msa0989050:intron | 50.0% | |
| !! | TGTGAGAGACTCGTTTTGGG+CGG | + | chr6_4:44250464-44250483 | Msa0989050:intron | 50.0% |
| !! | ACCTCTAAAGAAGCATCCCC+TGG | + | chr6_4:44251182-44251201 | Msa0989050:CDS | 50.0% |
| ACCATCTTCCACAATGCCAG+GGG | - | chr6_4:44251201-44251220 | None:intergenic | 50.0% | |
| GAACCATCTTCCACAATGCC+AGG | - | chr6_4:44251203-44251222 | None:intergenic | 50.0% | |
| !! | AAGGGCGTCCTCCTTCAAAA+AGG | + | chr6_4:44251273-44251292 | Msa0989050:CDS | 50.0% |
| TTTGGGAGGAATGGACATGG+TGG | + | chr6_4:44251642-44251661 | Msa0989050:CDS | 50.0% | |
| ! | GCTGTCATGTGCTGGACTTT+TGG | + | chr6_4:44252101-44252120 | Msa0989050:CDS | 50.0% |
| TGCTTGACAGGTTTCGGTCT+GGG | + | chr6_4:44252220-44252239 | Msa0989050:intron | 50.0% | |
| ACTTGGGGCTGGAGATGATG+AGG | + | chr6_4:44249825-44249844 | Msa0989050:CDS | 55.0% | |
| !! | GTGAGAGACTCGTTTTGGGC+GGG | + | chr6_4:44250465-44250484 | Msa0989050:intron | 55.0% |
| GCCAGGGGATGCTTCTTTAG+AGG | - | chr6_4:44251186-44251205 | None:intergenic | 55.0% | |
| !! | AGAAGCATCCCCTGGCATTG+TGG | + | chr6_4:44251190-44251209 | Msa0989050:CDS | 55.0% |
| TCCCCTGGCATTGTGGAAGA+TGG | + | chr6_4:44251197-44251216 | Msa0989050:CDS | 55.0% | |
| GGACGCCCTTTACTTCGAGT+CGG | - | chr6_4:44251263-44251282 | None:intergenic | 55.0% | |
| !! | TTTGGGCTTGTTGGCCTCCT+TGG | + | chr6_4:44252124-44252143 | Msa0989050:CDS | 55.0% |
| TTGGCCGTCATGTGCTTGAC+AGG | + | chr6_4:44252208-44252227 | Msa0989050:CDS | 55.0% | |
| GTGCTTGACAGGTTTCGGTC+TGG | + | chr6_4:44252219-44252238 | Msa0989050:intron | 55.0% | |
| !! | AGGTTTCGGTCTGGGCTAGT+TGG | + | chr6_4:44252228-44252247 | Msa0989050:intron | 55.0% |
| ! | AGGAGACTACGACTTGGGGC+TGG | + | chr6_4:44249814-44249833 | Msa0989050:CDS | 60.0% |
| TCGGACACTGCTGCTGCGTT+AGG | + | chr6_4:44252032-44252051 | Msa0989050:intron | 60.0% | |
| GACACTGCTGCTGCGTTAGG+TGG | + | chr6_4:44252035-44252054 | Msa0989050:intron | 60.0% | |
| CAGCAGCAGTGCCCTAGCAA+AGG | - | chr6_4:44252082-44252101 | None:intergenic | 60.0% | |
| CTGCTGCTGCTGTCATGTGC+TGG | + | chr6_4:44252093-44252112 | Msa0989050:CDS | 60.0% | |
| ! | GTTGGCCTCCTTGGCAGCAA+AGG | + | chr6_4:44252133-44252152 | Msa0989050:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 44248999 | 44252790 | 44248999 | ID=Msa0989050;Name=Msa0989050 |
| chr6_4 | mRNA | 44248999 | 44252790 | 44248999 | ID=Msa0989050-mRNA-1;Parent=Msa0989050;Name=Msa0989050-mRNA-1;_AED=0.33;_eAED=0.38;_QI=0|0.35|0.2|0.8|0.35|0.33|15|0|601 |
| chr6_4 | exon | 44248999 | 44249020 | 44248999 | ID=Msa0989050-mRNA-1:exon:10154;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44249230 | 44249424 | 44249230 | ID=Msa0989050-mRNA-1:exon:10155;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44249440 | 44249659 | 44249440 | ID=Msa0989050-mRNA-1:exon:10156;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44249687 | 44249900 | 44249687 | ID=Msa0989050-mRNA-1:exon:10157;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44250552 | 44250731 | 44250552 | ID=Msa0989050-mRNA-1:exon:10158;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44250841 | 44250848 | 44250841 | ID=Msa0989050-mRNA-1:exon:10159;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44250923 | 44251115 | 44250923 | ID=Msa0989050-mRNA-1:exon:10160;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44251164 | 44251382 | 44251164 | ID=Msa0989050-mRNA-1:exon:10161;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44251454 | 44251525 | 44251454 | ID=Msa0989050-mRNA-1:exon:10162;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44251627 | 44251722 | 44251627 | ID=Msa0989050-mRNA-1:exon:10163;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44251805 | 44251861 | 44251805 | ID=Msa0989050-mRNA-1:exon:10164;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44251950 | 44251992 | 44251950 | ID=Msa0989050-mRNA-1:exon:10165;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44252089 | 44252229 | 44252089 | ID=Msa0989050-mRNA-1:exon:10166;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44252549 | 44252556 | 44252549 | ID=Msa0989050-mRNA-1:exon:10167;Parent=Msa0989050-mRNA-1 |
| chr6_4 | exon | 44252653 | 44252790 | 44252653 | ID=Msa0989050-mRNA-1:exon:10168;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44248999 | 44249020 | 44248999 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44249230 | 44249424 | 44249230 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44249440 | 44249659 | 44249440 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44249687 | 44249900 | 44249687 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44250552 | 44250731 | 44250552 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44250841 | 44250848 | 44250841 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44250923 | 44251115 | 44250923 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44251164 | 44251382 | 44251164 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44251454 | 44251525 | 44251454 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44251627 | 44251722 | 44251627 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44251805 | 44251861 | 44251805 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44251950 | 44251992 | 44251950 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44252089 | 44252229 | 44252089 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44252549 | 44252556 | 44252549 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| chr6_4 | CDS | 44252653 | 44252790 | 44252653 | ID=Msa0989050-mRNA-1:cds;Parent=Msa0989050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
