Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989160 | XP_039685680.1 | 84.731 | 799 | 102 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989160 | sp|Q9SZL8|FRS5_ARATH | 27.769 | 641 | 383 | 14 | 32 | 665 | 70 | 637 | 1.75e-68 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989160 | D3YBB9 | 76.332 | 807 | 174 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1282 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0989160 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989160 | MtrunA17_Chr3g0088371 | 83.696 | 184 | 27 | 1 | 618 | 798 | 1 | 184 | 2.34e-103 | 316 |
| Msa0989160 | MtrunA17_Chr2g0324011 | 30.551 | 635 | 365 | 12 | 36 | 665 | 8 | 571 | 1.61e-100 | 323 |
| Msa0989160 | MtrunA17_Chr3g0082121 | 31.548 | 691 | 385 | 17 | 41 | 727 | 49 | 655 | 8.91e-100 | 324 |
| Msa0989160 | MtrunA17_Chr1g0202341 | 29.449 | 635 | 367 | 17 | 34 | 662 | 50 | 609 | 9.98e-79 | 267 |
| Msa0989160 | MtrunA17_Chr8g0363841 | 28.617 | 629 | 376 | 13 | 40 | 665 | 22 | 580 | 7.03e-74 | 254 |
| Msa0989160 | MtrunA17_Chr1g0203721 | 26.154 | 780 | 451 | 21 | 1 | 739 | 16 | 711 | 2.64e-73 | 256 |
| Msa0989160 | MtrunA17_Chr2g0296781 | 27.541 | 679 | 406 | 20 | 39 | 708 | 1 | 602 | 6.83e-69 | 241 |
| Msa0989160 | MtrunA17_Chr5g0448761 | 25.177 | 707 | 450 | 14 | 31 | 728 | 56 | 692 | 1.56e-68 | 241 |
| Msa0989160 | MtrunA17_Chr6g0458391 | 26.825 | 630 | 358 | 15 | 41 | 662 | 231 | 765 | 1.76e-64 | 230 |
| Msa0989160 | MtrunA17_Chr6g0477261 | 28.843 | 527 | 317 | 14 | 180 | 699 | 7 | 482 | 1.27e-63 | 225 |
| Msa0989160 | MtrunA17_Chr1g0164591 | 35.000 | 320 | 193 | 4 | 131 | 448 | 1 | 307 | 2.46e-62 | 213 |
| Msa0989160 | MtrunA17_Chr5g0441581 | 24.703 | 757 | 462 | 21 | 32 | 773 | 26 | 689 | 2.63e-59 | 214 |
| Msa0989160 | MtrunA17_Chr2g0287651 | 25.437 | 629 | 389 | 13 | 39 | 662 | 79 | 632 | 1.96e-57 | 211 |
| Msa0989160 | MtrunA17_Chr1g0207551 | 24.821 | 697 | 430 | 17 | 31 | 718 | 30 | 641 | 5.27e-55 | 203 |
| Msa0989160 | MtrunA17_Chr5g0440451 | 24.095 | 718 | 418 | 18 | 34 | 721 | 42 | 662 | 3.88e-54 | 202 |
| Msa0989160 | MtrunA17_Chr1g0172971 | 81.197 | 117 | 21 | 1 | 1 | 116 | 1 | 117 | 1.57e-53 | 194 |
| Msa0989160 | MtrunA17_Chr7g0258861 | 35.621 | 306 | 173 | 6 | 36 | 336 | 8 | 294 | 3.77e-53 | 187 |
| Msa0989160 | MtrunA17_Chr1g0196541 | 25.040 | 627 | 396 | 16 | 39 | 662 | 1 | 556 | 6.72e-53 | 196 |
| Msa0989160 | MtrunA17_Chr2g0329031 | 25.156 | 640 | 391 | 16 | 23 | 658 | 2 | 557 | 1.53e-52 | 195 |
| Msa0989160 | MtrunA17_Chr3g0118611 | 27.435 | 503 | 305 | 10 | 221 | 719 | 111 | 557 | 6.67e-52 | 194 |
| Msa0989160 | MtrunA17_Chr1g0198761 | 26.799 | 653 | 380 | 20 | 26 | 660 | 38 | 610 | 3.36e-51 | 191 |
| Msa0989160 | MtrunA17_Chr3g0080351 | 24.552 | 725 | 443 | 18 | 34 | 752 | 75 | 701 | 2.16e-48 | 184 |
| Msa0989160 | MtrunA17_Chr2g0287061 | 23.767 | 669 | 379 | 19 | 41 | 694 | 189 | 741 | 1.59e-46 | 178 |
| Msa0989160 | MtrunA17_Chr2g0290391 | 25.701 | 642 | 374 | 19 | 38 | 660 | 54 | 611 | 1.77e-46 | 177 |
| Msa0989160 | MtrunA17_Chr1g0203051 | 22.203 | 590 | 390 | 8 | 50 | 637 | 94 | 616 | 1.05e-45 | 174 |
| Msa0989160 | MtrunA17_Chr2g0276841 | 25.943 | 636 | 375 | 21 | 49 | 670 | 84 | 637 | 3.81e-44 | 170 |
| Msa0989160 | MtrunA17_Chr5g0448511 | 25.664 | 452 | 282 | 10 | 216 | 665 | 1 | 400 | 2.15e-43 | 165 |
| Msa0989160 | MtrunA17_Chr2g0291581 | 23.923 | 627 | 396 | 14 | 38 | 662 | 74 | 621 | 6.06e-41 | 160 |
| Msa0989160 | MtrunA17_Chr5g0431001 | 27.494 | 451 | 282 | 12 | 40 | 473 | 66 | 488 | 8.61e-41 | 157 |
| Msa0989160 | MtrunA17_Chr2g0291591 | 25.251 | 499 | 317 | 13 | 16 | 499 | 44 | 501 | 2.35e-40 | 157 |
| Msa0989160 | MtrunA17_Chr6g0475591 | 90.411 | 73 | 7 | 0 | 188 | 260 | 1 | 73 | 5.48e-40 | 141 |
| Msa0989160 | MtrunA17_Chr2g0294841 | 26.441 | 503 | 317 | 15 | 3 | 482 | 7 | 479 | 5.81e-35 | 142 |
| Msa0989160 | MtrunA17_Chr1g0149131 | 32.203 | 118 | 70 | 3 | 333 | 446 | 1 | 112 | 5.69e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0989160 | AT4G38180.1 | 27.769 | 641 | 383 | 14 | 32 | 665 | 70 | 637 | 1.78e-69 | 244 |
| Msa0989160 | AT4G15090.1 | 24.688 | 721 | 449 | 16 | 50 | 753 | 66 | 709 | 2.09e-59 | 217 |
| Msa0989160 | AT4G15090.5 | 24.688 | 721 | 449 | 16 | 50 | 753 | 66 | 709 | 2.09e-59 | 217 |
| Msa0989160 | AT4G15090.3 | 24.688 | 721 | 449 | 16 | 50 | 753 | 66 | 709 | 2.09e-59 | 217 |
| Msa0989160 | AT4G15090.2 | 24.688 | 721 | 449 | 16 | 50 | 753 | 66 | 709 | 2.09e-59 | 217 |
| Msa0989160 | AT4G15090.4 | 24.688 | 721 | 449 | 16 | 50 | 753 | 66 | 709 | 2.09e-59 | 217 |
| Msa0989160 | AT2G27110.2 | 26.298 | 597 | 366 | 15 | 127 | 719 | 108 | 634 | 2.53e-53 | 199 |
| Msa0989160 | AT2G27110.1 | 26.298 | 597 | 366 | 15 | 127 | 719 | 108 | 634 | 2.53e-53 | 199 |
| Msa0989160 | AT2G27110.3 | 26.753 | 542 | 326 | 13 | 180 | 719 | 17 | 489 | 1.47e-52 | 195 |
| Msa0989160 | AT3G06250.2 | 24.961 | 633 | 352 | 16 | 34 | 661 | 189 | 703 | 1.13e-50 | 191 |
| Msa0989160 | AT3G06250.1 | 24.961 | 633 | 352 | 16 | 34 | 661 | 189 | 703 | 1.13e-50 | 191 |
| Msa0989160 | AT3G06250.3 | 24.961 | 633 | 352 | 16 | 34 | 661 | 189 | 703 | 1.13e-50 | 191 |
| Msa0989160 | AT1G76320.3 | 24.520 | 677 | 415 | 19 | 50 | 720 | 12 | 598 | 5.13e-49 | 184 |
| Msa0989160 | AT1G76320.1 | 24.520 | 677 | 415 | 19 | 50 | 720 | 12 | 598 | 1.38e-48 | 184 |
| Msa0989160 | AT1G76320.4 | 24.520 | 677 | 415 | 19 | 50 | 720 | 12 | 598 | 1.38e-48 | 184 |
| Msa0989160 | AT1G76320.2 | 24.520 | 677 | 415 | 19 | 50 | 720 | 12 | 598 | 1.39e-48 | 184 |
| Msa0989160 | AT3G22170.2 | 22.678 | 732 | 445 | 18 | 34 | 753 | 69 | 691 | 1.32e-47 | 182 |
| Msa0989160 | AT3G22170.1 | 22.678 | 732 | 445 | 18 | 34 | 753 | 69 | 691 | 1.32e-47 | 182 |
| Msa0989160 | AT5G18960.2 | 24.420 | 647 | 361 | 18 | 24 | 661 | 200 | 727 | 1.19e-44 | 173 |
| Msa0989160 | AT5G18960.1 | 24.420 | 647 | 361 | 18 | 24 | 661 | 200 | 727 | 1.19e-44 | 173 |
| Msa0989160 | AT4G38170.1 | 25.290 | 431 | 264 | 11 | 235 | 662 | 24 | 399 | 2.26e-43 | 166 |
| Msa0989160 | AT1G10240.2 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 2.64e-41 | 162 |
| Msa0989160 | AT1G10240.1 | 24.719 | 623 | 377 | 19 | 49 | 659 | 62 | 604 | 2.64e-41 | 162 |
| Msa0989160 | AT5G28530.1 | 23.944 | 639 | 389 | 17 | 40 | 660 | 60 | 619 | 8.62e-41 | 160 |
| Msa0989160 | AT2G32250.5 | 23.159 | 747 | 433 | 23 | 4 | 743 | 10 | 622 | 6.21e-40 | 158 |
| Msa0989160 | AT5G28530.3 | 23.787 | 639 | 386 | 18 | 40 | 660 | 60 | 615 | 8.01e-40 | 157 |
| Msa0989160 | AT5G28530.2 | 23.787 | 639 | 386 | 18 | 40 | 660 | 60 | 615 | 8.01e-40 | 157 |
| Msa0989160 | AT2G32250.2 | 23.159 | 747 | 433 | 23 | 4 | 743 | 10 | 622 | 1.52e-39 | 157 |
| Msa0989160 | AT2G32250.4 | 23.159 | 747 | 433 | 23 | 4 | 743 | 10 | 622 | 1.52e-39 | 157 |
| Msa0989160 | AT2G32250.6 | 23.159 | 747 | 433 | 23 | 4 | 743 | 10 | 622 | 2.01e-39 | 157 |
| Msa0989160 | AT2G32250.1 | 23.159 | 747 | 433 | 23 | 4 | 743 | 10 | 622 | 2.01e-39 | 157 |
| Msa0989160 | AT2G32250.3 | 23.159 | 747 | 433 | 23 | 4 | 743 | 10 | 622 | 2.01e-39 | 157 |
| Msa0989160 | AT2G32250.8 | 23.110 | 701 | 401 | 21 | 50 | 743 | 12 | 581 | 1.21e-38 | 154 |
| Msa0989160 | AT2G32250.7 | 23.110 | 701 | 401 | 21 | 50 | 743 | 12 | 581 | 1.23e-38 | 154 |
| Msa0989160 | AT1G80010.1 | 24.201 | 657 | 367 | 22 | 41 | 662 | 101 | 661 | 2.05e-36 | 147 |
| Msa0989160 | AT1G52520.1 | 22.151 | 623 | 409 | 15 | 41 | 662 | 91 | 638 | 6.20e-33 | 136 |
| Msa0989160 | AT4G19990.1 | 28.358 | 268 | 185 | 4 | 219 | 483 | 106 | 369 | 5.86e-27 | 117 |
| Msa0989160 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 1.29e-12 | 72.0 |
| Msa0989160 | AT4G19990.5 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 6.87e-27 | 117 |
| Msa0989160 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.47e-12 | 72.0 |
| Msa0989160 | AT4G19990.3 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 7.65e-27 | 117 |
| Msa0989160 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.50e-12 | 72.0 |
| Msa0989160 | AT4G19990.4 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 7.65e-27 | 117 |
| Msa0989160 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.50e-12 | 72.0 |
| Msa0989160 | AT4G19990.7 | 28.358 | 268 | 185 | 4 | 219 | 483 | 177 | 440 | 7.84e-27 | 117 |
| Msa0989160 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 1.58e-12 | 71.6 |
| Msa0989160 | AT4G19990.6 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 8.64e-27 | 117 |
| Msa0989160 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.41e-12 | 72.0 |
| Msa0989160 | AT4G19990.2 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 8.64e-27 | 117 |
| Msa0989160 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.41e-12 | 72.0 |
| Msa0989160 | AT5G28530.4 | 21.622 | 629 | 353 | 20 | 40 | 660 | 60 | 556 | 5.73e-22 | 101 |
Find 123 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGATGAGTTGGACTTTA+AGG | 0.135459 | 6_4:+45419759 | Msa0989160:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 6_4:+45419450 | Msa0989160:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 6_4:-45420585 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 6_4:+45419717 | Msa0989160:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 6_4:+45418666 | Msa0989160:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 6_4:+45419169 | Msa0989160:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 6_4:+45419202 | Msa0989160:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 6_4:-45419296 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 6_4:-45420579 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 6_4:+45419491 | Msa0989160:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 6_4:+45420431 | Msa0989160:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 6_4:-45418716 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 6_4:+45420829 | Msa0989160:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 6_4:-45420647 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 6_4:+45420014 | Msa0989160:CDS |
| ACTAGCCTGGTCTGTGTATA+TGG | 0.360230 | 6_4:-45419314 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 6_4:+45419591 | Msa0989160:CDS |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 6_4:+45420810 | Msa0989160:three_prime_UTR |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 6_4:+45420423 | Msa0989160:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 6_4:+45418723 | Msa0989160:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 6_4:+45418715 | Msa0989160:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 6_4:+45417803 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 6_4:+45419590 | Msa0989160:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 6_4:-45420307 | None:intergenic |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 6_4:-45418186 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 6_4:+45420571 | Msa0989160:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 6_4:-45420561 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 6_4:+45419891 | Msa0989160:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 6_4:+45420456 | Msa0989160:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 6_4:+45417957 | Msa0989160:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 6_4:+45420139 | Msa0989160:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 6_4:-45420062 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 6_4:+45418028 | Msa0989160:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 6_4:+45420097 | Msa0989160:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 6_4:-45420063 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 6_4:+45418363 | Msa0989160:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 6_4:+45418245 | Msa0989160:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 6_4:-45419307 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 6_4:+45418228 | Msa0989160:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 6_4:-45420240 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 6_4:+45418111 | Msa0989160:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 6_4:+45418393 | Msa0989160:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 6_4:+45417882 | Msa0989160:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 6_4:+45419381 | Msa0989160:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 6_4:+45419545 | Msa0989160:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 6_4:+45420140 | Msa0989160:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 6_4:+45418077 | Msa0989160:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 6_4:-45419893 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 6_4:-45418222 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 6_4:+45418015 | Msa0989160:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 6_4:+45418506 | Msa0989160:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 6_4:-45418333 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 6_4:+45418071 | Msa0989160:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 6_4:+45419907 | Msa0989160:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 6_4:-45419182 | None:intergenic |
| CTGTCTATGAACCATCTGTT+GGG | 0.491412 | 6_4:+45420532 | Msa0989160:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 6_4:+45419492 | Msa0989160:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 6_4:+45418519 | Msa0989160:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 6_4:+45419731 | Msa0989160:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 6_4:-45419811 | None:intergenic |
| GAAGCGATGGGTCAAGGAGT+TGG | 0.502080 | 6_4:+45418438 | Msa0989160:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 6_4:-45418611 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 6_4:-45418321 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 6_4:+45419578 | Msa0989160:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 6_4:+45420076 | Msa0989160:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 6_4:-45418477 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 6_4:+45419596 | Msa0989160:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 6_4:+45418281 | Msa0989160:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 6_4:-45420056 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 6_4:-45419699 | None:intergenic |
| GAGGGATAATCATGATGAGT+TGG | 0.523126 | 6_4:+45419750 | Msa0989160:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 6_4:+45420077 | Msa0989160:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 6_4:-45419888 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 6_4:+45420637 | Msa0989160:CDS |
| ACTTCAACAACGCACTAGCC+TGG | 0.534735 | 6_4:-45419327 | None:intergenic |
| GAGAACATCTTATGAAGCGA+TGG | 0.538371 | 6_4:+45418425 | Msa0989160:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 6_4:+45418122 | Msa0989160:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 6_4:-45419694 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 6_4:+45419908 | Msa0989160:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 6_4:+45418123 | Msa0989160:CDS |
| TCTTATGAAGCGATGGGTCA+AGG | 0.545849 | 6_4:+45418432 | Msa0989160:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 6_4:+45417947 | Msa0989160:CDS |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | 6_4:+45420297 | Msa0989160:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 6_4:+45418573 | Msa0989160:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 6_4:+45417906 | Msa0989160:CDS |
| GCTGTCTATGAACCATCTGT+TGG | 0.568181 | 6_4:+45420531 | Msa0989160:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 6_4:+45420383 | Msa0989160:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 6_4:+45418280 | Msa0989160:CDS |
| GCGATGGGTCAAGGAGTTGG+AGG | 0.575794 | 6_4:+45418441 | Msa0989160:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 6_4:-45419812 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 6_4:-45420543 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 6_4:+45420662 | Msa0989160:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 6_4:-45419833 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 6_4:+45417871 | Msa0989160:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 6_4:+45420424 | Msa0989160:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 6_4:+45420419 | Msa0989160:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 6_4:+45420725 | Msa0989160:three_prime_UTR |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 6_4:+45420046 | Msa0989160:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 6_4:-45420499 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 6_4:+45418512 | Msa0989160:CDS |
| GAGGCTTTAACAATTTAAGC+GGG | 0.600751 | 6_4:+45420681 | Msa0989160:exon |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 6_4:-45420331 | None:intergenic |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 6_4:+45418515 | Msa0989160:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 6_4:+45420386 | Msa0989160:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 6_4:+45419809 | Msa0989160:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 6_4:+45419894 | Msa0989160:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 6_4:-45418171 | None:intergenic |
| AGAACATCTTATGAAGCGAT+GGG | 0.621635 | 6_4:+45418426 | Msa0989160:CDS |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 6_4:-45419547 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.624321 | 6_4:+45418446 | Msa0989160:CDS |
| TGAGGCTTTAACAATTTAAG+CGG | 0.627823 | 6_4:+45420680 | Msa0989160:exon |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 6_4:-45420061 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 6_4:+45419382 | Msa0989160:CDS |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 6_4:-45420304 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 6_4:+45419732 | Msa0989160:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 6_4:-45420282 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 6_4:-45419853 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 6_4:+45420408 | Msa0989160:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 6_4:-45420158 | None:intergenic |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 6_4:+45420141 | Msa0989160:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 6_4:+45419992 | Msa0989160:CDS |
| TCAAACCATATACACAGACC+AGG | 0.683597 | 6_4:+45419309 | Msa0989160:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 6_4:+45419993 | Msa0989160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATGTTATAAGTT+AGG | + | chr6_4:45420712-45420731 | Msa0989160:three_prime_UTR | 10.0% |
| !! | TTTAATTATGCATATAACAC+TGG | + | chr6_4:45418015-45418034 | Msa0989160:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr6_4:45418071-45418090 | Msa0989160:CDS | 20.0% |
| !! | ATGTCTATAAGATATATAAG+TGG | + | chr6_4:45418280-45418299 | Msa0989160:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | + | chr6_4:45418281-45418300 | Msa0989160:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr6_4:45418870-45418889 | Msa0989160:intron | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr6_4:45418898-45418917 | Msa0989160:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr6_4:45419520-45419539 | Msa0989160:CDS | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | + | chr6_4:45420810-45420829 | Msa0989160:three_prime_UTR | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr6_4:45417906-45417925 | Msa0989160:CDS | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | + | chr6_4:45417947-45417966 | Msa0989160:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr6_4:45418067-45418086 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr6_4:45418077-45418096 | Msa0989160:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr6_4:45418393-45418412 | Msa0989160:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr6_4:45418715-45418734 | Msa0989160:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr6_4:45418741-45418760 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr6_4:45418788-45418807 | Msa0989160:intron | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr6_4:45418890-45418909 | Msa0989160:intron | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr6_4:45418897-45418916 | Msa0989160:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr6_4:45419146-45419165 | Msa0989160:intron | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | - | chr6_4:45419358-45419377 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr6_4:45419450-45419469 | Msa0989160:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr6_4:45419524-45419543 | Msa0989160:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr6_4:45419717-45419736 | Msa0989160:CDS | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr6_4:45419856-45419875 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr6_4:45419891-45419910 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr6_4:45419891-45419910 | Msa0989160:CDS | 25.0% |
| !! | CAAAGTTTTCACAATTGAAA+AGG | + | chr6_4:45419951-45419970 | Msa0989160:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr6_4:45419992-45420011 | Msa0989160:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr6_4:45419993-45420012 | Msa0989160:CDS | 25.0% |
| ATATTAACTTCATCTGAGAG+TGG | + | chr6_4:45417871-45417890 | Msa0989160:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | + | chr6_4:45417957-45417976 | Msa0989160:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr6_4:45418122-45418141 | Msa0989160:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr6_4:45418123-45418142 | Msa0989160:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | + | chr6_4:45418212-45418231 | Msa0989160:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr6_4:45418245-45418264 | Msa0989160:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr6_4:45418324-45418343 | None:intergenic | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr6_4:45418470-45418489 | Msa0989160:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr6_4:45418480-45418499 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | - | chr6_4:45418594-45418613 | None:intergenic | 30.0% | |
| !!! | AAGACATAGCCAGTATTTTT+TGG | + | chr6_4:45418628-45418647 | Msa0989160:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | + | chr6_4:45418629-45418648 | Msa0989160:CDS | 30.0% |
| CAACAAGATTATGCTCTATT+TGG | + | chr6_4:45418666-45418685 | Msa0989160:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr6_4:45418719-45418738 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr6_4:45418723-45418742 | Msa0989160:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr6_4:45418802-45418821 | Msa0989160:intron | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | + | chr6_4:45418827-45418846 | Msa0989160:intron | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | - | chr6_4:45418961-45418980 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | + | chr6_4:45419105-45419124 | Msa0989160:intron | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr6_4:45419185-45419204 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr6_4:45419299-45419318 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | + | chr6_4:45419349-45419368 | Msa0989160:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr6_4:45419361-45419380 | Msa0989160:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr6_4:45419406-45419425 | Msa0989160:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr6_4:45419491-45419510 | Msa0989160:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr6_4:45419492-45419511 | Msa0989160:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr6_4:45419702-45419721 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr6_4:45419836-45419855 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr6_4:45419896-45419915 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr6_4:45419894-45419913 | Msa0989160:CDS | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | - | chr6_4:45420064-45420083 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr6_4:45420065-45420084 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr6_4:45420076-45420095 | Msa0989160:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr6_4:45420077-45420096 | Msa0989160:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr6_4:45420173-45420192 | Msa0989160:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | + | chr6_4:45420176-45420195 | Msa0989160:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | + | chr6_4:45420241-45420260 | Msa0989160:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | + | chr6_4:45420408-45420427 | Msa0989160:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr6_4:45420456-45420475 | Msa0989160:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr6_4:45420564-45420583 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | + | chr6_4:45420571-45420590 | Msa0989160:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | - | chr6_4:45420582-45420601 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAATTTAAG+CGG | + | chr6_4:45420680-45420699 | Msa0989160:exon | 30.0% |
| ATAAGTTAGGAAAGATGATG+AGG | + | chr6_4:45420725-45420744 | Msa0989160:three_prime_UTR | 30.0% | |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | + | chr6_4:45420743-45420762 | Msa0989160:three_prime_UTR | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | + | chr6_4:45417843-45417862 | Msa0989160:exon | 35.0% |
| ATAACACTGGATTCTCTGTT+AGG | + | chr6_4:45418028-45418047 | Msa0989160:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | + | chr6_4:45418111-45418130 | Msa0989160:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | + | chr6_4:45418148-45418167 | Msa0989160:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | - | chr6_4:45418189-45418208 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | + | chr6_4:45418206-45418225 | Msa0989160:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | + | chr6_4:45418211-45418230 | Msa0989160:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr6_4:45418363-45418382 | Msa0989160:CDS | 35.0% | |
| AGAACATCTTATGAAGCGAT+GGG | + | chr6_4:45418426-45418445 | Msa0989160:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | + | chr6_4:45418506-45418525 | Msa0989160:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr6_4:45418808-45418827 | Msa0989160:intron | 35.0% |
| CATAAATTCCAAGGCAAGAT+AGG | - | chr6_4:45418928-45418947 | None:intergenic | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | - | chr6_4:45418937-45418956 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr6_4:45419202-45419221 | Msa0989160:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr6_4:45419245-45419264 | Msa0989160:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr6_4:45419374-45419393 | Msa0989160:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | + | chr6_4:45419534-45419553 | Msa0989160:CDS | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | + | chr6_4:45419578-45419597 | Msa0989160:CDS | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | + | chr6_4:45419591-45419610 | Msa0989160:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr6_4:45419661-45419680 | Msa0989160:CDS | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | + | chr6_4:45419731-45419750 | Msa0989160:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr6_4:45419732-45419751 | Msa0989160:CDS | 35.0% | |
| ! | TCATGATGAGTTGGACTTTA+AGG | + | chr6_4:45419759-45419778 | Msa0989160:CDS | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | + | chr6_4:45420014-45420033 | Msa0989160:CDS | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | - | chr6_4:45420066-45420085 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr6_4:45420183-45420202 | Msa0989160:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | - | chr6_4:45420243-45420262 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | + | chr6_4:45420244-45420263 | Msa0989160:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr6_4:45420510-45420529 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | + | chr6_4:45420637-45420656 | Msa0989160:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | + | chr6_4:45420662-45420681 | Msa0989160:CDS | 35.0% | |
| ! | GAGGCTTTAACAATTTAAGC+GGG | + | chr6_4:45420681-45420700 | Msa0989160:exon | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | + | chr6_4:45417882-45417901 | Msa0989160:CDS | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | - | chr6_4:45418162-45418181 | None:intergenic | 40.0% |
| GAGAACATCTTATGAAGCGA+TGG | + | chr6_4:45418425-45418444 | Msa0989160:CDS | 40.0% | |
| TCCATCTGCCCAAAAAATAC+TGG | - | chr6_4:45418640-45418659 | None:intergenic | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | + | chr6_4:45418941-45418960 | Msa0989160:intron | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr6_4:45419051-45419070 | Msa0989160:intron | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr6_4:45419055-45419074 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | + | chr6_4:45419169-45419188 | Msa0989160:intron | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr6_4:45419310-45419329 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | + | chr6_4:45419309-45419328 | Msa0989160:CDS | 40.0% | |
| !! | GTATGCATTGGTCTTCAGTT+TGG | + | chr6_4:45419590-45419609 | Msa0989160:CDS | 40.0% |
| ! | GTGAGGTCACATTTTACAGT+TGG | + | chr6_4:45419613-45419632 | Msa0989160:CDS | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr6_4:45419697-45419716 | None:intergenic | 40.0% | |
| GAGGGATAATCATGATGAGT+TGG | + | chr6_4:45419750-45419769 | Msa0989160:CDS | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr6_4:45419907-45419926 | Msa0989160:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr6_4:45419908-45419927 | Msa0989160:CDS | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | + | chr6_4:45420046-45420065 | Msa0989160:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr6_4:45420139-45420158 | Msa0989160:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr6_4:45420140-45420159 | Msa0989160:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr6_4:45420186-45420205 | Msa0989160:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | - | chr6_4:45420285-45420304 | None:intergenic | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | + | chr6_4:45420297-45420316 | Msa0989160:CDS | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | - | chr6_4:45420307-45420326 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | - | chr6_4:45420310-45420329 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | - | chr6_4:45420334-45420353 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | + | chr6_4:45420419-45420438 | Msa0989160:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr6_4:45420502-45420521 | None:intergenic | 40.0% |
| CTGTCTATGAACCATCTGTT+GGG | + | chr6_4:45420532-45420551 | Msa0989160:CDS | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | - | chr6_4:45420588-45420607 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | - | chr6_4:45420650-45420669 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr6_4:45418174-45418193 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | + | chr6_4:45418216-45418235 | Msa0989160:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | - | chr6_4:45418225-45418244 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr6_4:45418228-45418247 | Msa0989160:CDS | 45.0% |
| CTCAAGTAGCACAAATGCTC+TGG | - | chr6_4:45418336-45418355 | None:intergenic | 45.0% | |
| TCTTATGAAGCGATGGGTCA+AGG | + | chr6_4:45418432-45418451 | Msa0989160:CDS | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | + | chr6_4:45418512-45418531 | Msa0989160:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | + | chr6_4:45418515-45418534 | Msa0989160:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | + | chr6_4:45418573-45418592 | Msa0989160:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr6_4:45418614-45418633 | None:intergenic | 45.0% | |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr6_4:45418636-45418655 | Msa0989160:CDS | 45.0% |
| ! | ACTAGCCTGGTCTGTGTATA+TGG | - | chr6_4:45419317-45419336 | None:intergenic | 45.0% |
| AGCCACTTAAAGTCCGAAGT+AGG | - | chr6_4:45419550-45419569 | None:intergenic | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr6_4:45419596-45419615 | Msa0989160:CDS | 45.0% |
| ATCCCAACAGTCAGCTTATG+CGG | + | chr6_4:45419809-45419828 | Msa0989160:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr6_4:45420059-45420078 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr6_4:45420141-45420160 | Msa0989160:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr6_4:45420161-45420180 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | + | chr6_4:45420431-45420450 | Msa0989160:CDS | 45.0% | |
| GCTGTCTATGAACCATCTGT+TGG | + | chr6_4:45420531-45420550 | Msa0989160:CDS | 45.0% | |
| TGGGTGATCCTATCTTGCCT+TGG | + | chr6_4:45418917-45418936 | Msa0989160:intron | 50.0% | |
| ACTTCAACAACGCACTAGCC+TGG | - | chr6_4:45419330-45419349 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | + | chr6_4:45419381-45419400 | Msa0989160:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | + | chr6_4:45419382-45419401 | Msa0989160:CDS | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | + | chr6_4:45419545-45419564 | Msa0989160:CDS | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | - | chr6_4:45419814-45419833 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | + | chr6_4:45420097-45420116 | Msa0989160:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | + | chr6_4:45420383-45420402 | Msa0989160:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | + | chr6_4:45420424-45420443 | Msa0989160:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr6_4:45420546-45420565 | None:intergenic | 50.0% |
| GAAGCGATGGGTCAAGGAGT+TGG | + | chr6_4:45418438-45418457 | Msa0989160:CDS | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr6_4:45418519-45418538 | Msa0989160:CDS | 55.0% |
| GGACCGCATAAGCTGACTGT+TGG | - | chr6_4:45419815-45419834 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | + | chr6_4:45420423-45420442 | Msa0989160:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | + | chr6_4:45420437-45420456 | Msa0989160:CDS | 55.0% | |
| GCGATGGGTCAAGGAGTTGG+AGG | + | chr6_4:45418441-45418460 | Msa0989160:CDS | 60.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr6_4:45418446-45418465 | Msa0989160:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | + | chr6_4:45420386-45420405 | Msa0989160:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 45417817 | 45420851 | 45417817 | ID=Msa0989160;Name=Msa0989160 |
| chr6_4 | mRNA | 45417817 | 45420851 | 45417817 | ID=Msa0989160-mRNA-1;Parent=Msa0989160;Name=Msa0989160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|153|800 |
| chr6_4 | exon | 45417817 | 45418744 | 45417817 | ID=Msa0989160-mRNA-1:exon:10218;Parent=Msa0989160-mRNA-1 |
| chr6_4 | exon | 45419179 | 45420851 | 45419179 | ID=Msa0989160-mRNA-1:exon:10219;Parent=Msa0989160-mRNA-1 |
| chr6_4 | five_prime_UTR | 45417817 | 45417861 | 45417817 | ID=Msa0989160-mRNA-1:five_prime_utr;Parent=Msa0989160-mRNA-1 |
| chr6_4 | CDS | 45417862 | 45418744 | 45417862 | ID=Msa0989160-mRNA-1:cds;Parent=Msa0989160-mRNA-1 |
| chr6_4 | CDS | 45419179 | 45420698 | 45419179 | ID=Msa0989160-mRNA-1:cds;Parent=Msa0989160-mRNA-1 |
| chr6_4 | three_prime_UTR | 45420699 | 45420851 | 45420699 | ID=Msa0989160-mRNA-1:three_prime_utr;Parent=Msa0989160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
