AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0989430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0989430 MtrunA17_Chr6g0480541 78.333 240 4 2 30 221 970 1209 5.36e-124 379
Msa0989430 MtrunA17_Chr5g0437131 52.941 238 64 2 30 219 475 712 5.11e-79 250
Msa0989430 MtrunA17_Chr6g0480291 78.824 85 5 2 149 221 1 84 6.39e-39 129
Msa0989430 MtrunA17_Chr6g0480481 96.721 61 2 0 64 124 140 200 1.72e-35 124
Msa0989430 MtrunA17_Chr6g0480471 80.303 66 5 1 106 171 15 72 9.00e-30 105
Msa0989430 MtrunA17_Chr3g0139371 31.858 226 109 4 25 215 186 401 1.16e-25 102
Msa0989430 MtrunA17_Chr4g0058241 34.021 194 108 4 33 209 230 420 1.27e-23 97.8
Msa0989430 MtrunA17_Chr3g0123491 34.848 198 111 4 33 213 225 421 1.85e-23 97.1
Msa0989430 MtrunA17_Chr3g0116701 32.995 197 112 3 33 212 226 419 2.53e-23 96.7
Msa0989430 MtrunA17_Chr6g0480191 95.238 42 2 0 180 221 1 42 7.28e-23 87.0
Msa0989430 MtrunA17_Chr8g0369241 30.389 283 101 8 30 218 212 492 1.20e-22 95.9
Msa0989430 MtrunA17_Chr8g0370321 31.953 169 87 4 65 212 249 410 7.47e-21 90.1
Msa0989430 MtrunA17_Chr1g0210061 27.600 250 124 7 21 213 677 926 1.52e-20 89.7
Msa0989430 MtrunA17_Chr5g0407121 30.723 166 96 4 65 213 252 415 1.68e-20 89.0
Msa0989430 MtrunA17_Chr4g0027671 31.515 165 93 4 67 213 317 479 3.27e-20 88.6
Msa0989430 MtrunA17_Chr7g0248461 35.065 154 94 4 64 213 174 325 5.38e-20 87.0
Msa0989430 MtrunA17_Chr2g0320631 32.515 163 90 4 69 213 318 478 5.72e-20 87.8
Msa0989430 MtrunA17_Chr1g0179611 30.723 166 89 3 69 213 319 479 9.06e-20 87.0
Msa0989430 MtrunA17_Chr8g0348481 33.548 155 95 4 64 213 173 324 1.49e-18 82.8
Msa0989430 MtrunA17_Chr4g0045841 32.680 153 98 3 64 213 191 341 1.80e-18 82.8
Msa0989430 MtrunA17_Chr4g0030231 32.911 158 100 4 64 217 176 331 5.32e-18 81.3
Msa0989430 MtrunA17_Chr8g0387401 33.117 154 97 4 64 213 188 339 2.35e-17 79.7
Msa0989430 MtrunA17_Chr1g0194201 33.333 159 100 3 63 218 210 365 2.75e-17 79.7
Msa0989430 MtrunA17_Chr4g0030151 32.258 155 97 5 64 213 175 326 4.43e-17 79.0
Msa0989430 MtrunA17_Chr8g0369451 30.290 241 131 8 6 212 46 283 5.98e-17 79.0
Msa0989430 MtrunA17_Chr7g0270371 33.553 152 95 3 63 211 210 358 6.69e-17 78.6
Msa0989430 MtrunA17_Chr1g0193081 32.075 159 102 3 63 218 210 365 9.26e-17 78.2
Msa0989430 MtrunA17_Chr5g0397261 33.333 153 94 4 66 213 179 328 9.52e-17 77.8
Msa0989430 MtrunA17_Chr2g0320011 34.194 155 96 3 67 218 227 378 9.82e-17 78.2
Msa0989430 MtrunA17_Chr5g0409421 29.046 241 134 8 6 212 46 283 2.93e-16 76.6
Msa0989430 MtrunA17_Chr8g0378831 30.625 160 104 5 64 218 168 325 5.68e-16 75.5
Msa0989430 MtrunA17_Chr2g0284091 32.903 155 98 3 67 218 179 330 5.90e-16 75.9
Msa0989430 MtrunA17_Chr3g0141871 30.675 163 106 4 64 221 168 328 9.24e-16 75.1
Msa0989430 MtrunA17_Chr2g0277011 31.447 159 103 3 63 218 225 380 1.93e-15 74.3
Msa0989430 MtrunA17_Chr8g0350311 31.013 158 103 3 67 221 278 432 4.54e-15 73.6
Msa0989430 MtrunA17_Chr3g0102571 29.221 154 103 3 64 213 216 367 8.77e-15 72.4
Msa0989430 MtrunA17_Chr8g0392811 31.447 159 92 4 66 212 255 408 1.04e-13 69.7
Msa0989430 MtrunA17_Chr4g0065851 29.012 162 94 5 66 213 163 317 1.04e-13 69.7
Msa0989430 MtrunA17_Chr4g0057791 34.646 127 77 3 92 212 385 511 1.26e-13 69.3
Msa0989430 MtrunA17_Chr7g0246591 30.189 159 105 3 63 218 276 431 2.10e-13 68.6
Msa0989430 MtrunA17_Chr1g0187371 32.540 126 74 3 92 213 191 309 2.35e-13 67.8
Msa0989430 MtrunA17_Chr5g0443351 29.448 163 94 5 64 212 158 313 2.46e-13 68.6
Msa0989430 MtrunA17_Chr2g0287271 29.193 161 93 5 66 212 163 316 3.21e-13 68.2
Msa0989430 MtrunA17_Chr4g0002001 32.680 153 89 5 68 213 159 304 3.92e-13 67.0
Msa0989430 MtrunA17_Chr8g0339221 30.000 130 85 3 86 212 158 284 8.71e-13 66.6
Msa0989430 MtrunA17_Chr5g0396361 29.814 161 102 5 68 220 278 435 7.51e-12 63.9
Msa0989430 MtrunA17_Chr6g0480331 83.333 30 5 0 170 199 13 42 1.08e-11 58.2
Msa0989430 MtrunA17_Chr3g0096631 30.909 165 89 5 64 212 161 316 1.21e-11 63.5
Msa0989430 MtrunA17_Chr6g0486031 28.986 138 96 2 83 219 271 407 3.16e-11 62.0
Msa0989430 MtrunA17_Chr8g0377071 31.481 162 94 6 64 212 519 676 5.47e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0989430 AT1G73450.1 70.833 240 22 2 30 221 913 1152 9.35e-114 351
Msa0989430 AT1G73460.2 70.833 240 22 2 30 221 930 1169 1.92e-113 350
Msa0989430 AT1G73460.1 70.833 240 22 2 30 221 930 1169 1.92e-113 350
Msa0989430 AT3G17750.1 71.784 241 20 2 29 221 898 1138 1.56e-111 345
Msa0989430 AT2G40120.1 51.293 232 65 2 30 213 333 564 1.13e-74 236
Msa0989430 AT4G24740.10 33.333 198 112 3 33 213 24 218 6.61e-29 108
Msa0989430 AT4G24740.8 33.333 198 112 3 33 213 24 218 6.61e-29 108
Msa0989430 AT4G24740.6 33.333 198 112 3 33 213 127 321 8.72e-28 107
Msa0989430 AT4G24740.9 33.333 198 112 3 33 213 127 321 8.72e-28 107
Msa0989430 AT4G24740.2 33.333 198 112 3 33 213 127 321 8.72e-28 107
Msa0989430 AT4G24740.7 34.343 198 110 4 33 213 192 386 2.02e-27 107
Msa0989430 AT4G24740.1 34.343 198 110 4 33 213 230 424 3.07e-27 107
Msa0989430 AT3G53570.3 34.000 200 111 5 33 213 233 430 1.04e-25 103
Msa0989430 AT3G53570.5 34.000 200 111 5 33 213 233 430 1.04e-25 103
Msa0989430 AT3G53570.1 34.000 200 111 5 33 213 247 444 1.10e-25 103
Msa0989430 AT3G53570.4 34.000 200 111 5 33 213 247 444 1.10e-25 103
Msa0989430 AT3G53570.2 34.000 200 111 5 33 213 247 444 1.10e-25 103
Msa0989430 AT4G32660.4 32.243 214 119 4 25 212 71 284 3.62e-24 97.4
Msa0989430 AT4G32660.3 32.243 214 119 4 25 212 175 388 2.37e-23 97.1
Msa0989430 AT4G32660.1 32.243 214 119 4 25 212 183 396 2.63e-23 97.1
Msa0989430 AT4G03175.1 45.652 92 38 1 134 213 2 93 3.22e-23 90.1
Msa0989430 AT3G44850.1 32.558 172 84 4 66 213 319 482 8.74e-23 96.3
Msa0989430 AT4G24740.5 40.000 120 69 1 33 152 127 243 1.05e-21 90.1
Msa0989430 AT4G35500.2 31.515 165 95 4 65 213 256 418 1.79e-21 92.0
Msa0989430 AT4G35500.1 31.515 165 95 4 65 213 255 417 1.83e-21 92.0
Msa0989430 AT4G24740.3 40.000 120 69 1 33 152 230 346 2.59e-21 90.9
Msa0989430 AT2G17530.1 30.909 165 96 4 65 213 254 416 8.99e-21 90.1
Msa0989430 AT2G17530.3 30.909 165 96 4 65 213 254 416 8.99e-21 90.1
Msa0989430 AT5G35980.2 31.140 228 114 6 30 217 195 419 1.11e-20 90.5
Msa0989430 AT5G22840.1 32.544 169 82 5 69 213 311 471 1.39e-20 89.7
Msa0989430 AT5G35980.3 35.758 165 72 3 30 160 160 324 1.96e-20 89.7
Msa0989430 AT5G35980.1 35.758 165 72 3 30 160 195 359 1.99e-20 89.7
Msa0989430 AT3G53030.1 31.325 166 88 3 69 213 307 467 2.32e-20 89.4
Msa0989430 AT4G32660.2 37.415 147 83 3 25 162 183 329 4.39e-20 87.4
Msa0989430 AT1G13350.3 28.287 251 122 5 21 213 582 832 3.08e-19 86.3
Msa0989430 AT1G13350.2 28.287 251 122 5 21 213 536 786 6.17e-19 85.5
Msa0989430 AT1G13350.1 28.287 251 122 5 21 213 509 759 9.21e-19 84.7
Msa0989430 AT2G46070.1 35.065 154 94 4 64 213 177 328 3.02e-18 82.4
Msa0989430 AT3G59790.1 32.258 155 100 3 62 213 194 346 3.32e-18 82.4
Msa0989430 AT2G46070.3 35.065 154 94 4 64 213 211 362 3.76e-18 82.4
Msa0989430 AT3G53640.1 30.857 175 95 3 65 213 466 640 5.07e-18 82.4
Msa0989430 AT1G01560.2 33.537 164 99 5 64 219 176 337 5.29e-18 81.6
Msa0989430 AT4G01370.1 34.416 154 95 4 64 213 179 330 6.41e-18 81.6
Msa0989430 AT4G11330.1 34.194 155 94 5 64 213 179 330 1.33e-17 80.9
Msa0989430 AT3G25840.2 26.800 250 126 6 21 213 422 671 2.02e-17 80.9
Msa0989430 AT4G18710.1 34.194 155 96 3 67 218 179 330 2.97e-17 79.7
Msa0989430 AT4G13020.6 35.659 129 80 2 86 213 158 284 3.80e-17 79.7
Msa0989430 AT4G13020.7 35.385 130 81 2 85 213 157 284 4.02e-17 79.3
Msa0989430 AT4G13020.4 35.659 129 80 2 86 213 158 284 4.10e-17 79.3
Msa0989430 AT4G13020.2 35.659 129 80 2 86 213 166 292 4.61e-17 79.7
Msa0989430 AT4G13020.3 35.659 129 80 2 86 213 166 292 4.62e-17 79.7
Msa0989430 AT4G13020.8 35.385 130 81 2 85 213 166 293 4.66e-17 79.3
Msa0989430 AT5G14640.1 33.333 159 100 3 63 218 209 364 4.84e-17 79.3
Msa0989430 AT5G14640.2 33.333 159 100 3 63 218 209 364 4.84e-17 79.3
Msa0989430 AT4G13020.1 35.659 129 80 2 86 213 158 284 5.79e-17 79.3
Msa0989430 AT4G13020.5 35.659 129 80 2 86 213 167 293 6.16e-17 79.3
Msa0989430 AT1G07880.2 31.481 162 105 4 60 217 165 324 1.75e-16 77.4
Msa0989430 AT3G25840.1 26.800 250 126 6 21 213 684 933 2.16e-16 77.8
Msa0989430 AT1G06390.2 33.548 155 97 3 67 218 209 360 2.25e-16 77.4
Msa0989430 AT1G06390.1 33.548 155 97 3 67 218 209 360 2.25e-16 77.4
Msa0989430 AT5G26751.1 32.075 159 102 3 63 218 204 359 2.28e-16 77.4
Msa0989430 AT3G05840.2 32.075 159 102 3 63 218 208 363 3.03e-16 77.0
Msa0989430 AT3G05840.1 32.075 159 102 3 63 218 208 363 3.03e-16 77.0
Msa0989430 AT3G61160.4 31.646 158 102 3 67 221 241 395 6.29e-16 76.3
Msa0989430 AT3G61160.1 31.646 158 102 3 67 221 241 395 7.74e-16 75.9
Msa0989430 AT1G76540.1 30.968 155 99 4 63 213 155 305 8.32e-16 75.1
Msa0989430 AT3G61160.2 31.646 158 102 3 67 221 248 402 8.91e-16 75.9
Msa0989430 AT1G09840.11 29.775 178 119 3 36 210 64 238 1.12e-15 74.7
Msa0989430 AT2G30980.1 32.903 155 98 3 67 218 211 362 1.32e-15 75.1
Msa0989430 AT1G10210.2 32.704 159 102 3 64 218 168 325 1.86e-15 74.7
Msa0989430 AT1G10210.3 32.704 159 102 3 64 218 168 325 1.86e-15 74.7
Msa0989430 AT1G10210.1 32.704 159 102 3 64 218 168 325 1.86e-15 74.7
Msa0989430 AT1G20930.1 33.333 126 73 3 92 213 189 307 3.38e-15 73.6
Msa0989430 AT2G01450.3 28.708 209 121 8 30 218 117 317 3.55e-15 74.3
Msa0989430 AT2G01450.1 28.708 209 121 8 30 218 117 317 3.55e-15 74.3
Msa0989430 AT2G01450.2 28.708 209 121 8 30 218 117 317 3.55e-15 74.3
Msa0989430 AT2G01450.4 28.708 209 121 8 30 218 117 317 3.55e-15 74.3
Msa0989430 AT4G00720.1 32.075 159 102 3 63 218 273 428 3.91e-15 73.9
Msa0989430 AT2G43790.1 30.719 153 101 3 64 213 199 349 4.25e-15 73.6
Msa0989430 AT1G57870.1 30.818 159 104 3 63 218 217 372 4.35e-15 73.9
Msa0989430 AT1G57870.4 30.818 159 104 3 63 218 217 372 4.35e-15 73.9
Msa0989430 AT1G57870.2 30.818 159 104 3 63 218 217 372 4.35e-15 73.9
Msa0989430 AT1G57870.3 30.818 159 104 3 63 218 217 372 4.36e-15 73.9
Msa0989430 AT1G09840.3 31.447 159 103 3 63 218 218 373 9.02e-15 72.8
Msa0989430 AT1G09840.7 31.447 159 103 3 63 218 218 373 9.02e-15 72.8
Msa0989430 AT1G09840.10 31.447 159 103 3 63 218 218 373 9.02e-15 72.8
Msa0989430 AT1G09840.6 31.447 159 103 3 63 218 218 373 9.02e-15 72.8
Msa0989430 AT1G09840.4 31.447 159 103 3 63 218 218 373 9.02e-15 72.8
Msa0989430 AT1G09840.1 31.447 159 103 3 63 218 218 373 9.02e-15 72.8
Msa0989430 AT1G09840.9 31.447 159 103 3 63 218 218 373 9.02e-15 72.8
Msa0989430 AT1G09840.5 31.447 159 103 3 63 218 218 373 9.02e-15 72.8
Msa0989430 AT1G09840.8 31.447 159 103 3 63 218 218 373 9.02e-15 72.8
Msa0989430 AT1G09840.2 31.447 159 103 3 63 218 218 373 9.02e-15 72.8
Msa0989430 AT4G19110.2 25.000 240 145 6 6 212 46 283 1.19e-14 72.4
Msa0989430 AT4G19110.1 25.000 240 145 6 6 212 46 283 1.27e-14 72.4
Msa0989430 AT2G18170.1 30.061 163 107 5 64 221 168 328 1.63e-14 72.0
Msa0989430 AT4G36450.1 30.769 156 106 2 64 218 168 322 2.07e-14 71.6
Msa0989430 AT4G19110.3 28.378 148 101 3 68 212 82 227 2.17e-14 71.6
Msa0989430 AT2G46070.2 34.028 144 87 5 64 202 177 317 2.92e-14 70.9
Msa0989430 AT4G24740.4 40.449 89 50 1 33 121 230 315 3.22e-14 70.9
Msa0989430 AT3G14720.2 31.481 162 94 4 64 213 161 317 4.35e-14 70.9
Msa0989430 AT3G14720.3 31.481 162 94 4 64 213 161 317 4.35e-14 70.9
Msa0989430 AT1G59580.2 30.818 159 105 3 64 218 168 325 6.54e-14 70.1
Msa0989430 AT1G59580.1 30.818 159 105 3 64 218 168 325 6.54e-14 70.1
Msa0989430 AT3G14720.1 31.677 161 93 4 64 212 161 316 1.12e-13 69.7
Msa0989430 AT1G73670.1 29.193 161 95 5 66 213 228 382 7.43e-13 67.4
Msa0989430 AT2G38620.4 34.641 153 86 6 68 213 97 242 1.30e-12 65.5
Msa0989430 AT3G61160.5 30.822 146 95 3 67 209 241 383 1.31e-12 66.6
Msa0989430 AT1G53510.1 29.448 163 94 5 64 212 161 316 1.57e-12 66.6
Msa0989430 AT2G38620.2 34.641 153 86 6 68 213 159 304 1.59e-12 65.9
Msa0989430 AT3G18040.2 31.481 162 92 5 64 212 71 226 1.60e-12 66.2
Msa0989430 AT5G19010.1 29.487 156 89 5 66 207 163 311 1.63e-12 66.6
Msa0989430 AT3G18040.1 31.481 162 92 5 64 212 159 314 1.95e-12 66.2
Msa0989430 AT3G18040.5 31.481 162 92 5 64 212 154 309 2.04e-12 66.2
Msa0989430 AT1G54610.1 32.258 155 96 5 68 216 256 407 2.11e-12 66.2
Msa0989430 AT1G54610.3 32.258 155 96 5 68 216 256 407 2.11e-12 66.2
Msa0989430 AT1G54610.2 32.258 155 96 5 68 216 256 407 2.11e-12 66.2
Msa0989430 AT3G18040.3 31.481 162 92 5 64 212 268 423 2.26e-12 66.2
Msa0989430 AT3G18040.4 31.481 162 92 5 64 212 268 423 3.21e-12 65.5
Msa0989430 AT4G18710.2 41.379 87 47 3 67 149 173 259 5.78e-12 63.9
Msa0989430 AT3G61160.3 37.113 97 58 2 67 160 241 337 8.02e-12 63.9
Msa0989430 AT2G17530.2 45.161 62 32 1 65 126 254 313 9.05e-12 63.9
Msa0989430 AT3G61160.6 37.113 97 58 2 67 160 248 344 9.64e-12 63.9
Msa0989430 AT5G63370.2 28.659 164 90 8 67 212 305 459 3.03e-11 62.8
Msa0989430 AT5G63370.3 28.659 164 90 8 67 212 305 459 3.03e-11 62.8
Msa0989430 AT5G63370.7 28.659 164 90 8 67 212 439 593 5.28e-11 62.0
Msa0989430 AT5G63370.8 28.659 164 90 8 67 212 439 593 5.28e-11 62.0
Msa0989430 AT5G63370.4 28.659 164 90 8 67 212 439 593 5.28e-11 62.0
Msa0989430 AT5G63370.6 28.659 164 90 8 67 212 439 593 5.28e-11 62.0
Msa0989430 AT5G63370.1 28.659 164 90 8 67 212 439 593 5.28e-11 62.0
Msa0989430 AT1G74330.3 29.252 147 94 3 68 207 259 402 5.84e-11 62.0
Msa0989430 AT2G42880.2 28.221 163 96 5 64 212 161 316 6.01e-11 61.6
Msa0989430 AT1G74330.1 29.252 147 94 3 68 207 259 402 6.37e-11 62.0
Msa0989430 AT1G74330.2 29.252 147 94 3 68 207 259 402 6.71e-11 61.6
Msa0989430 AT2G42880.1 28.221 163 96 5 64 212 161 316 9.61e-11 61.2

Find 59 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAATTCAACAGAGAATC+AGG 0.285719 6_4:+46303322 Msa0989430:CDS
GATGCAGAAGGTCGCTTCTT+CGG 0.294316 6_4:-46305614 None:intergenic
ATGCAGAAGGTCGCTTCTTC+GGG 0.331076 6_4:-46305613 None:intergenic
GCTAGCATACTTTGACCAAT+TGG 0.379617 6_4:-46305014 None:intergenic
TCTTTCTGTTGCTGCACTGC+AGG 0.394850 6_4:+46303249 Msa0989430:CDS
CGTGCTCCCGAGGTTATTCT+CGG 0.405780 6_4:+46303989 Msa0989430:CDS
ACCCTTGCAAGTAATGTTGC+CGG 0.412272 6_4:-46304975 None:intergenic
CAACGAAGTCAATGAAGCCT+TGG 0.423700 6_4:-46305571 None:intergenic
CATTACTTGCAAGGGTGATC+GGG 0.435857 6_4:+46304982 Msa0989430:CDS
TTTATGAAACTCGTATAAGT+TGG 0.441775 6_4:-46303305 None:intergenic
TGAATACTTCAAGATGATAT+CGG 0.447666 6_4:-46305677 None:intergenic
ATGACAAGAAGATTGATATC+TGG 0.466209 6_4:+46304020 Msa0989430:CDS
ATCGGGATCATCGGTCCAAT+TGG 0.469951 6_4:+46304999 Msa0989430:CDS
CTGGTCCCTTGGATGCATCT+TGG 0.473461 6_4:+46304039 Msa0989430:CDS
CAAGATGATATCGGTTCGTA+AGG 0.480516 6_4:-46305668 None:intergenic
AAGATTGATATCTGGTCCCT+TGG 0.481494 6_4:+46304028 Msa0989430:CDS
TTTGCTCATATGTTCAGTCT+AGG 0.483006 6_4:+46303960 Msa0989430:CDS
ACATTACTTGCAAGGGTGAT+CGG 0.483894 6_4:+46304981 Msa0989430:CDS
AATAACCTCGGGAGCACGAT+AGG 0.490675 6_4:-46303984 None:intergenic
TATGCTTTATGAGAGGAATC+AGG 0.494533 6_4:+46305076 Msa0989430:CDS
GGTCAAAGTATGCTAGCAAA+AGG 0.496032 6_4:+46305020 Msa0989430:CDS
TTCCAAAGAAGACATCTTTG+AGG 0.496816 6_4:+46305528 Msa0989430:intron
CCCTTGCAAGTAATGTTGCC+GGG 0.500738 6_4:-46304974 None:intergenic
CTGAAGCTCTAAAGCACCCC+TGG 0.508338 6_4:+46305636 Msa0989430:CDS
AACGAAGTCAATGAAGCCTT+GGG 0.518256 6_4:-46305570 None:intergenic
CTTATTTCAAAATGATTCCC+CGG 0.520946 6_4:+46304956 Msa0989430:CDS
TTCGTAAGGGTATGATAACC+AGG 0.523874 6_4:-46305654 None:intergenic
CCCCGGCAACATTACTTGCA+AGG 0.528874 6_4:+46304973 Msa0989430:CDS
CCCGGCAACATTACTTGCAA+GGG 0.532375 6_4:+46304974 Msa0989430:CDS
ATCTTGGCAGAACTTTGTAC+TGG 0.534669 6_4:+46304055 Msa0989430:CDS
TTTGAGGCATAGATTACCGA+TGG 0.557764 6_4:+46305544 Msa0989430:CDS
GCAAGGGTGATCGGGATCAT+CGG 0.567193 6_4:+46304990 Msa0989430:CDS
CTTCGTTGCTCATTTGCTCG+AGG 0.578087 6_4:+46305586 Msa0989430:CDS
GTTCTGCCAAGATGCATCCA+AGG 0.579553 6_4:-46304045 None:intergenic
GAGGTGAAGGTCATTGATCA+TGG 0.579761 6_4:+46303911 Msa0989430:CDS
AAGTATGCTAGCAAAAGGAC+GGG 0.589744 6_4:+46305025 Msa0989430:CDS
AAAGTATGCTAGCAAAAGGA+CGG 0.592834 6_4:+46305024 Msa0989430:CDS
TGAAAGCCCGAGAATAACCT+CGG 0.600878 6_4:-46303996 None:intergenic
TTGAGGCATAGATTACCGAT+GGG 0.601000 6_4:+46305545 Msa0989430:CDS
GTGCTCCCGAGGTTATTCTC+GGG 0.606254 6_4:+46303990 Msa0989430:CDS
CTACAGCCGATGTGAGGTGA+AGG 0.619012 6_4:+46303898 Msa0989430:intron
AAAATCATATGCTTTATGAG+AGG 0.623112 6_4:+46305069 Msa0989430:CDS
AATTCAACAGAGAATCAGGA+GGG 0.629021 6_4:+46303326 Msa0989430:CDS
TTCTGCCAAGATGCATCCAA+GGG 0.630562 6_4:-46304044 None:intergenic
TTTAGAGCTTCAGATGCAGA+AGG 0.638379 6_4:-46305626 None:intergenic
GAAAGCCCGAGAATAACCTC+GGG 0.642293 6_4:-46303995 None:intergenic
TAGACTGAACATATGAGCAA+AGG 0.647223 6_4:-46303958 None:intergenic
CCTTGCAAGTAATGTTGCCG+GGG 0.647394 6_4:-46304973 None:intergenic
TAAAAGCTACAGCCGATGTG+AGG 0.648020 6_4:+46303892 Msa0989430:intron
AAGTGTACTTCACAATGCCA+AGG 0.649789 6_4:+46303350 Msa0989430:CDS
TAGGTCCTATCGTGCTCCCG+AGG 0.649968 6_4:+46303979 Msa0989430:CDS
AAGATGATATCGGTTCGTAA+GGG 0.655236 6_4:-46305667 None:intergenic
TCGTAAGGGTATGATAACCA+GGG 0.667962 6_4:-46305653 None:intergenic
ATTCAACAGAGAATCAGGAG+GGG 0.674312 6_4:+46303327 Msa0989430:CDS
CAATGACCTTCACCTCACAT+CGG 0.677097 6_4:-46303904 None:intergenic
AAATTCAACAGAGAATCAGG+AGG 0.684821 6_4:+46303325 Msa0989430:CDS
CGTAAGGGTATGATAACCAG+GGG 0.686121 6_4:-46305652 None:intergenic
TGAGGCATAGATTACCGATG+GGG 0.706951 6_4:+46305546 Msa0989430:CDS
GAGGCATAGATTACCGATGG+GGG 0.707031 6_4:+46305547 Msa0989430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTATTTTTATATTGATTA+CGG + chr6_4:46303546-46303565 Msa0989430:intron 10.0%
!! TTTAATTCAAAATTGAATTA+AGG + chr6_4:46303573-46303592 Msa0989430:intron 10.0%
!! TCTTTAATATAACTGAATAA+AGG + chr6_4:46303004-46303023 Msa0989430:intron 15.0%
!!! TTATATTTTATAACAAATCC+TGG - chr6_4:46303112-46303131 None:intergenic 15.0%
!!! TGATTTTTTAGATTGATTTA+AGG + chr6_4:46303608-46303627 Msa0989430:intron 15.0%
!! TTAGTATTCTCTTTATATAA+AGG + chr6_4:46303753-46303772 Msa0989430:intron 15.0%
!!! TAGGATTATTATACTTTTTT+GGG + chr6_4:46304803-46304822 Msa0989430:intron 15.0%
!! ATAAGGAAAGAAAAATTTAT+GGG - chr6_4:46304904-46304923 None:intergenic 15.0%
!! AATAAGGAAAGAAAAATTTA+TGG - chr6_4:46304905-46304924 None:intergenic 15.0%
!! TATAAACACTTATCATATAA+GGG + chr6_4:46305292-46305311 Msa0989430:intron 15.0%
!! AATTAATGTTAAAATTGCCT+AGG - chr6_4:46302845-46302864 None:intergenic 20.0%
!! AATTAATGTTAAAATTGCCT+AGG - chr6_4:46302845-46302864 None:intergenic 20.0%
!! ATATTAAAGAAGAAAGTCAA+CGG - chr6_4:46302994-46303013 None:intergenic 20.0%
!! ATTCAAAATTGAATTAAGGT+TGG + chr6_4:46303577-46303596 Msa0989430:intron 20.0%
!! TTAGATTAGATCAAATTTGA+AGG + chr6_4:46303665-46303684 Msa0989430:intron 20.0%
!! TAGATTAGATCAAATTTGAA+GGG + chr6_4:46303666-46303685 Msa0989430:intron 20.0%
!!! CCTAAGTTTGAAAATATTTT+TGG - chr6_4:46304121-46304140 None:intergenic 20.0%
!!! CCAAAAATATTTTCAAACTT+AGG + chr6_4:46304118-46304137 Msa0989430:intron 20.0%
!! ATTTATATTCTATGTGTTTC+AGG + chr6_4:46304351-46304370 Msa0989430:intron 20.0%
!! ATACTTTGTCAAGTTATTTA+AGG - chr6_4:46304708-46304727 None:intergenic 20.0%
!!! GTAGGATTATTATACTTTTT+TGG + chr6_4:46304802-46304821 Msa0989430:intron 20.0%
!!! ATTTTTTGTGAAGTACTTAT+AGG - chr6_4:46305054-46305073 None:intergenic 20.0%
!!! AGTCAATTTCAGAAATTTTA+GGG - chr6_4:46305216-46305235 None:intergenic 20.0%
!!! TAGTCAATTTCAGAAATTTT+AGG - chr6_4:46305217-46305236 None:intergenic 20.0%
!! GTATAAACACTTATCATATA+AGG + chr6_4:46305291-46305310 Msa0989430:intron 20.0%
!! ATACAATCGTATGATAATAT+GGG - chr6_4:46305404-46305423 None:intergenic 20.0%
!!! TTTTCCATGATAATTAAATG+TGG - chr6_4:46305449-46305468 None:intergenic 20.0%
!! GCAATTTTACAGTAATTATG+TGG + chr6_4:46302629-46302648 Msa0989430:intron 25.0%
!!! TAAAACCATGTTTTGTTGTA+TGG + chr6_4:46302798-46302817 Msa0989430:intron 25.0%
! TTTATGAAACTCGTATAAGT+TGG - chr6_4:46303308-46303327 None:intergenic 25.0%
!! CTTTTAACCAAAATATTCTC+TGG - chr6_4:46303878-46303897 None:intergenic 25.0%
!! TTTTACATGTGAAAATGATG+TGG + chr6_4:46304482-46304501 Msa0989430:intron 25.0%
!! AAAATGATTTGTGACATATC+AGG + chr6_4:46304740-46304759 Msa0989430:intron 25.0%
!! TTATAGTACAGTGCTTTATT+TGG + chr6_4:46304861-46304880 Msa0989430:intron 25.0%
! AGCATAGTTGAATATCAATA+AGG - chr6_4:46304921-46304940 None:intergenic 25.0%
! AAAATCATATGCTTTATGAG+AGG + chr6_4:46305069-46305088 Msa0989430:CDS 25.0%
! TTTGTGTTCAAAAAGCAAAA+TGG + chr6_4:46305181-46305200 Msa0989430:intron 25.0%
! TTGTGTTCAAAAAGCAAAAT+GGG + chr6_4:46305182-46305201 Msa0989430:intron 25.0%
! TTTCCATAAACTCTTTCAAA+CGG + chr6_4:46305367-46305386 Msa0989430:intron 25.0%
! CATACAATCGTATGATAATA+TGG - chr6_4:46305405-46305424 None:intergenic 25.0%
! ATTACTCTACTGATTGCATT+TGG + chr6_4:46302580-46302599 Msa0989430:intron 30.0%
! TACTGATTGCATTTGGTTAA+AGG + chr6_4:46302587-46302606 Msa0989430:intron 30.0%
! ACTTTTGTAATGTTGCACAA+TGG + chr6_4:46302722-46302741 Msa0989430:intron 30.0%
ATATTCTTGTCATTGTTCCA+TGG + chr6_4:46302745-46302764 Msa0989430:intron 30.0%
AATGTTAAAATTGCCTAGGA+AGG - chr6_4:46302841-46302860 None:intergenic 30.0%
!! GGTATTTTTCAATACATTCC+AGG + chr6_4:46303091-46303110 Msa0989430:intron 30.0%
AAGAATTGAATTACGTTACG+AGG + chr6_4:46303148-46303167 Msa0989430:intron 30.0%
CATAAATTCAACAGAGAATC+AGG + chr6_4:46303322-46303341 Msa0989430:CDS 30.0%
TTCAAACTTAATTTCCGTGA+AGG - chr6_4:46303497-46303516 None:intergenic 30.0%
! GGAAATTAAGTTTGAAGCTT+TGG + chr6_4:46303501-46303520 Msa0989430:intron 30.0%
ACACAGAAGAGTTTAAATGA+AGG + chr6_4:46303698-46303717 Msa0989430:intron 30.0%
CACAGAAGAGTTTAAATGAA+GGG + chr6_4:46303699-46303718 Msa0989430:intron 30.0%
GTTTAAATGAAGGGTGAAAT+TGG + chr6_4:46303708-46303727 Msa0989430:intron 30.0%
TATAATGTTTGTAGTGTGAC+AGG - chr6_4:46303796-46303815 None:intergenic 30.0%
GTCAATTACCATTCAATGTT+TGG + chr6_4:46303840-46303859 Msa0989430:intron 30.0%
ATGACAAGAAGATTGATATC+TGG + chr6_4:46304020-46304039 Msa0989430:CDS 30.0%
! GTTTTCCACTCTAATACATT+AGG + chr6_4:46304192-46304211 Msa0989430:intron 30.0%
TTAGACCTAATGTATTAGAG+TGG - chr6_4:46304200-46304219 None:intergenic 30.0%
AAGGATAAACAGTGAATTTC+AGG - chr6_4:46304228-46304247 None:intergenic 30.0%
AAGAGTGATACAACAAAAGT+TGG - chr6_4:46304292-46304311 None:intergenic 30.0%
!! ACTTTTGTTGTATCACTCTT+AGG + chr6_4:46304292-46304311 Msa0989430:intron 30.0%
GAACACAAATGGAATGAAAT+GGG - chr6_4:46304437-46304456 None:intergenic 30.0%
TTATTTGAGTGGAACACAAA+TGG - chr6_4:46304448-46304467 None:intergenic 30.0%
ACTTCATCAGTTTATTTGAG+TGG - chr6_4:46304459-46304478 None:intergenic 30.0%
TGCTAATCAACAGTTCTATA+GGG - chr6_4:46304552-46304571 None:intergenic 30.0%
!!! TAGTTTCTGTGTTGTTTTAG+TGG + chr6_4:46304622-46304641 Msa0989430:intron 30.0%
!!! GTTGTTTTAGTGGAACTATA+TGG + chr6_4:46304632-46304651 Msa0989430:intron 30.0%
CTTATTTCAAAATGATTCCC+CGG + chr6_4:46304956-46304975 Msa0989430:CDS 30.0%
TAAGCTGTTAATCCAAACAT+GGG - chr6_4:46305259-46305278 None:intergenic 30.0%
TTAAGCTGTTAATCCAAACA+TGG - chr6_4:46305260-46305279 None:intergenic 30.0%
TCCATGATAATTAAATGTGG+AGG - chr6_4:46305446-46305465 None:intergenic 30.0%
CATGGAAAAATTATTCAGTG+AGG + chr6_4:46305460-46305479 Msa0989430:intron 30.0%
CAAAGCCATACAACAAAACA+TGG - chr6_4:46302806-46302825 None:intergenic 35.0%
!! TGTTTTGTTGTATGGCTTTG+AGG + chr6_4:46302806-46302825 Msa0989430:intron 35.0%
CTATCCACTTAATGTGTTTG+TGG + chr6_4:46303064-46303083 Msa0989430:intron 35.0%
ATAGCCACAAACACATTAAG+TGG - chr6_4:46303071-46303090 None:intergenic 35.0%
ACTTAATGTGTTTGTGGCTA+TGG + chr6_4:46303070-46303089 Msa0989430:intron 35.0%
AAATTCAACAGAGAATCAGG+AGG + chr6_4:46303325-46303344 Msa0989430:CDS 35.0%
AATTCAACAGAGAATCAGGA+GGG + chr6_4:46303326-46303345 Msa0989430:CDS 35.0%
TATCTACAACTAGCATGCAA+TGG + chr6_4:46303421-46303440 Msa0989430:intron 35.0%
AAGTGCTTCCAAACATTGAA+TGG - chr6_4:46303851-46303870 None:intergenic 35.0%
! CTTGAAGCCAGAGAATATTT+TGG + chr6_4:46303868-46303887 Msa0989430:intron 35.0%
TAGACTGAACATATGAGCAA+AGG - chr6_4:46303961-46303980 None:intergenic 35.0%
TTTGCTCATATGTTCAGTCT+AGG + chr6_4:46303960-46303979 Msa0989430:CDS 35.0%
!! TATCACTCTTAGGAAGTATC+TGG + chr6_4:46304302-46304321 Msa0989430:intron 35.0%
GGAACACAAATGGAATGAAA+TGG - chr6_4:46304438-46304457 None:intergenic 35.0%
ACAGCGATAATGCATTACAA+TGG - chr6_4:46304524-46304543 None:intergenic 35.0%
CTGCTAATCAACAGTTCTAT+AGG - chr6_4:46304553-46304572 None:intergenic 35.0%
! TATTTTCTGCTATCCACGAT+TGG + chr6_4:46304589-46304608 Msa0989430:intron 35.0%
! ATTTTCTGCTATCCACGATT+GGG + chr6_4:46304590-46304609 Msa0989430:intron 35.0%
!! AACTATGCTTGTTGTATTGC+AGG + chr6_4:46304932-46304951 Msa0989430:intron 35.0%
AAAGTATGCTAGCAAAAGGA+CGG + chr6_4:46305024-46305043 Msa0989430:CDS 35.0%
TATGCTTTATGAGAGGAATC+AGG + chr6_4:46305076-46305095 Msa0989430:CDS 35.0%
AGACCGTTTGAAAGAGTTTA+TGG - chr6_4:46305373-46305392 None:intergenic 35.0%
GTATGTTACAATTGTTGCCA+TGG + chr6_4:46305420-46305439 Msa0989430:intron 35.0%
ATAATTAAATGTGGAGGCCA+TGG - chr6_4:46305440-46305459 None:intergenic 35.0%
GCCTCCACATTTAATTATCA+TGG + chr6_4:46305442-46305461 Msa0989430:intron 35.0%
TTGATATGCAGTAAAGCAAC+AGG + chr6_4:46305492-46305511 Msa0989430:intron 35.0%
!! AAGATGTCTTCTTTGGAATC+AGG - chr6_4:46305526-46305545 None:intergenic 35.0%
TTCCAAAGAAGACATCTTTG+AGG + chr6_4:46305528-46305547 Msa0989430:intron 35.0%
!! AAGATGATATCGGTTCGTAA+GGG - chr6_4:46305670-46305689 None:intergenic 35.0%
GTATGAGCATGTTAGTCACA+TGG + chr6_4:46302557-46302576 Msa0989430:intron 40.0%
!! TTAAAGGTGCCATCTTCACT+TGG + chr6_4:46302603-46302622 Msa0989430:intron 40.0%
!! TAAAGGTGCCATCTTCACTT+GGG + chr6_4:46302604-46302623 Msa0989430:intron 40.0%
CATCTTTATGCCATGTCAGA+AGG + chr6_4:46302675-46302694 Msa0989430:intron 40.0%
! TTCCATGGTGTTTCTCCTTT+TGG + chr6_4:46302760-46302779 Msa0989430:intron 40.0%
GATAGCATGTCAAAGCCAAA+AGG - chr6_4:46302778-46302797 None:intergenic 40.0%
!! TTTGTTGTATGGCTTTGAGG+AGG + chr6_4:46302809-46302828 Msa0989430:intron 40.0%
CATTAGATACTGTCCTTCCT+AGG + chr6_4:46302906-46302925 Msa0989430:intron 40.0%
CTGAATAAAGGTTGTTGCTG+TGG + chr6_4:46303016-46303035 Msa0989430:intron 40.0%
ATTCAACAGAGAATCAGGAG+GGG + chr6_4:46303327-46303346 Msa0989430:CDS 40.0%
AAGTGTACTTCACAATGCCA+AGG + chr6_4:46303350-46303369 Msa0989430:CDS 40.0%
AAGATTGATATCTGGTCCCT+TGG + chr6_4:46304028-46304047 Msa0989430:CDS 40.0%
ATCTTGGCAGAACTTTGTAC+TGG + chr6_4:46304055-46304074 Msa0989430:CDS 40.0%
GATTCATGCCAAATTCGTGT+TGG + chr6_4:46304149-46304168 Msa0989430:intron 40.0%
ATGTACCTCCAACACGAATT+TGG - chr6_4:46304160-46304179 None:intergenic 40.0%
GGGGAGAAAATCACATTTCA+AGG - chr6_4:46304247-46304266 None:intergenic 40.0%
! TGAAATGTGATTTTCTCCCC+TGG + chr6_4:46304247-46304266 Msa0989430:intron 40.0%
TCTAAACAATGCCATCACCA+GGG - chr6_4:46304267-46304286 None:intergenic 40.0%
ATCTAAACAATGCCATCACC+AGG - chr6_4:46304268-46304287 None:intergenic 40.0%
!! TTAGGAAGTATCTGGTAGAC+AGG + chr6_4:46304310-46304329 Msa0989430:intron 40.0%
! TGAAATGGGACAGCTTGTTT+CGG - chr6_4:46304423-46304442 None:intergenic 40.0%
GTAATGCATTATCGCTGTAG+TGG + chr6_4:46304526-46304545 Msa0989430:intron 40.0%
TCGTGGATAGCAGAAAATAG+TGG - chr6_4:46304588-46304607 None:intergenic 40.0%
TGTATGCTCTTTGCAGTTGT+AGG + chr6_4:46304784-46304803 Msa0989430:intron 40.0%
TTTGGGTGAAACTGTGAAAG+CGG + chr6_4:46304820-46304839 Msa0989430:intron 40.0%
ACATTACTTGCAAGGGTGAT+CGG + chr6_4:46304981-46305000 Msa0989430:CDS 40.0%
GCTAGCATACTTTGACCAAT+TGG - chr6_4:46305017-46305036 None:intergenic 40.0%
GGTCAAAGTATGCTAGCAAA+AGG + chr6_4:46305020-46305039 Msa0989430:CDS 40.0%
AAGTATGCTAGCAAAAGGAC+GGG + chr6_4:46305025-46305044 Msa0989430:CDS 40.0%
TCGTGTATATTGCCCATGTT+TGG + chr6_4:46305244-46305263 Msa0989430:intron 40.0%
TCTTTCAAACGGTCTCGTAA+GGG + chr6_4:46305378-46305397 Msa0989430:intron 40.0%
TGCCTCAAAGATGTCTTCTT+TGG - chr6_4:46305533-46305552 None:intergenic 40.0%
! TTTGAGGCATAGATTACCGA+TGG + chr6_4:46305544-46305563 Msa0989430:CDS 40.0%
TTGAGGCATAGATTACCGAT+GGG + chr6_4:46305545-46305564 Msa0989430:CDS 40.0%
AACGAAGTCAATGAAGCCTT+GGG - chr6_4:46305573-46305592 None:intergenic 40.0%
! TTTAGAGCTTCAGATGCAGA+AGG - chr6_4:46305629-46305648 None:intergenic 40.0%
! TCGTAAGGGTATGATAACCA+GGG - chr6_4:46305656-46305675 None:intergenic 40.0%
! TTCGTAAGGGTATGATAACC+AGG - chr6_4:46305657-46305676 None:intergenic 40.0%
!! CAAGATGATATCGGTTCGTA+AGG - chr6_4:46305671-46305690 None:intergenic 40.0%
TGAAGGGTTTAAGAGGAGTG+AGG + chr6_4:46302531-46302550 Msa0989430:intron 45.0%
AATTGCCTCCCAAGTGAAGA+TGG - chr6_4:46302615-46302634 None:intergenic 45.0%
GTTCATTGAGCCTTCTGACA+TGG - chr6_4:46302688-46302707 None:intergenic 45.0%
AGCCAAAAGGAGAAACACCA+TGG - chr6_4:46302765-46302784 None:intergenic 45.0%
GAGGAGGACAAGAATTTCCT+AGG + chr6_4:46302825-46302844 Msa0989430:intron 45.0%
TGTCCACTTTCCTCTAACAG+AGG + chr6_4:46303461-46303480 Msa0989430:intron 45.0%
TAAAAGCTACAGCCGATGTG+AGG + chr6_4:46303892-46303911 Msa0989430:intron 45.0%
CAATGACCTTCACCTCACAT+CGG - chr6_4:46303907-46303926 None:intergenic 45.0%
GAGGTGAAGGTCATTGATCA+TGG + chr6_4:46303911-46303930 Msa0989430:CDS 45.0%
TGAAAGCCCGAGAATAACCT+CGG - chr6_4:46303999-46304018 None:intergenic 45.0%
TTCTGCCAAGATGCATCCAA+GGG - chr6_4:46304047-46304066 None:intergenic 45.0%
TCATGCCAAATTCGTGTTGG+AGG + chr6_4:46304152-46304171 Msa0989430:intron 45.0%
CTAAACAATGCCATCACCAG+GGG - chr6_4:46304266-46304285 None:intergenic 45.0%
TCTGGTAGACAGGTTAGAGT+AGG + chr6_4:46304320-46304339 Msa0989430:intron 45.0%
CTAACTAGTGTTCCCAATCG+TGG - chr6_4:46304605-46304624 None:intergenic 45.0%
ACCCTTGCAAGTAATGTTGC+CGG - chr6_4:46304978-46304997 None:intergenic 45.0%
CATTACTTGCAAGGGTGATC+GGG + chr6_4:46304982-46305001 Msa0989430:CDS 45.0%
CTCTTTCAAACGGTCTCGTA+AGG + chr6_4:46305377-46305396 Msa0989430:intron 45.0%
TGAGGCATAGATTACCGATG+GGG + chr6_4:46305546-46305565 Msa0989430:CDS 45.0%
CAACGAAGTCAATGAAGCCT+TGG - chr6_4:46305574-46305593 None:intergenic 45.0%
! CGTAAGGGTATGATAACCAG+GGG - chr6_4:46305655-46305674 None:intergenic 45.0%
!!! ATTTGATTTAAAATTTAATT+AGG + chr6_4:46303641-46303660 Msa0989430:intron 5.0%
!! TATAATTAAAGATAAAATAA+AGG + chr6_4:46305335-46305354 Msa0989430:intron 5.0%
TCTTTCTGTTGCTGCACTGC+AGG + chr6_4:46303249-46303268 Msa0989430:CDS 50.0%
CTTCACAATGCCAAGGTTGC+AGG + chr6_4:46303357-46303376 Msa0989430:intron 50.0%
ATGCCAAGGTTGCAGGTTTG+TGG + chr6_4:46303364-46303383 Msa0989430:intron 50.0%
ACTCCACAAACCTGCAACCT+TGG - chr6_4:46303370-46303389 None:intergenic 50.0%
TGGCCTCTGTTAGAGGAAAG+TGG - chr6_4:46303467-46303486 None:intergenic 50.0%
CCTCTAACAGAGGCCATAGT+CGG + chr6_4:46303471-46303490 Msa0989430:intron 50.0%
ATTTCCGTGAAGGCCGACTA+TGG - chr6_4:46303487-46303506 None:intergenic 50.0%
! AATAACCTCGGGAGCACGAT+AGG - chr6_4:46303987-46304006 None:intergenic 50.0%
GAAAGCCCGAGAATAACCTC+GGG - chr6_4:46303998-46304017 None:intergenic 50.0%
GTTCTGCCAAGATGCATCCA+AGG - chr6_4:46304048-46304067 None:intergenic 50.0%
! GTGATTTTCTCCCCTGGTGA+TGG + chr6_4:46304253-46304272 Msa0989430:intron 50.0%
CCTTGCAAGTAATGTTGCCG+GGG - chr6_4:46304976-46304995 None:intergenic 50.0%
CCCTTGCAAGTAATGTTGCC+GGG - chr6_4:46304977-46304996 None:intergenic 50.0%
CCCGGCAACATTACTTGCAA+GGG + chr6_4:46304974-46304993 Msa0989430:CDS 50.0%
ATCGGGATCATCGGTCCAAT+TGG + chr6_4:46304999-46305018 Msa0989430:CDS 50.0%
GAGGCATAGATTACCGATGG+GGG + chr6_4:46305547-46305566 Msa0989430:CDS 50.0%
CTTCGTTGCTCATTTGCTCG+AGG + chr6_4:46305586-46305605 Msa0989430:CDS 50.0%
ATGCAGAAGGTCGCTTCTTC+GGG - chr6_4:46305616-46305635 None:intergenic 50.0%
GATGCAGAAGGTCGCTTCTT+CGG - chr6_4:46305617-46305636 None:intergenic 50.0%
! AGGTGCCATCTTCACTTGGG+AGG + chr6_4:46302607-46302626 Msa0989430:intron 55.0%
AAGTGGACAGACCACCACGT+CGG - chr6_4:46303450-46303469 None:intergenic 55.0%
CCGACTATGGCCTCTGTTAG+AGG - chr6_4:46303474-46303493 None:intergenic 55.0%
CTACAGCCGATGTGAGGTGA+AGG + chr6_4:46303898-46303917 Msa0989430:intron 55.0%
CGTGCTCCCGAGGTTATTCT+CGG + chr6_4:46303989-46304008 Msa0989430:CDS 55.0%
GTGCTCCCGAGGTTATTCTC+GGG + chr6_4:46303990-46304009 Msa0989430:CDS 55.0%
CTGGTCCCTTGGATGCATCT+TGG + chr6_4:46304039-46304058 Msa0989430:CDS 55.0%
CCCCGGCAACATTACTTGCA+AGG + chr6_4:46304973-46304992 Msa0989430:CDS 55.0%
GCAAGGGTGATCGGGATCAT+CGG + chr6_4:46304990-46305009 Msa0989430:CDS 55.0%
!! CTGAAGCTCTAAAGCACCCC+TGG + chr6_4:46305636-46305655 Msa0989430:CDS 55.0%
GCATGCAATGGACACCGACG+TGG + chr6_4:46303433-46303452 Msa0989430:intron 60.0%
TGCAATGGACACCGACGTGG+TGG + chr6_4:46303436-46303455 Msa0989430:intron 60.0%
GAGGCCATAGTCGGCCTTCA+CGG + chr6_4:46303480-46303499 Msa0989430:intron 60.0%
TAGGTCCTATCGTGCTCCCG+AGG + chr6_4:46303979-46303998 Msa0989430:CDS 60.0%
AGATTACCGATGGGGGCCCA+AGG + chr6_4:46305554-46305573 Msa0989430:CDS 60.0%
ATGAAGCCTTGGGCCCCCAT+CGG - chr6_4:46305563-46305582 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 46302526 46305691 46302526 ID=Msa0989430;Name=Msa0989430
chr6_4 mRNA 46302526 46305691 46302526 ID=Msa0989430-mRNA-1;Parent=Msa0989430;Name=Msa0989430-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.8|0.25|0.2|5|0|221
chr6_4 exon 46302526 46302529 46302526 ID=Msa0989430-mRNA-1:exon:10378;Parent=Msa0989430-mRNA-1
chr6_4 exon 46303185 46303371 46303185 ID=Msa0989430-mRNA-1:exon:10379;Parent=Msa0989430-mRNA-1
chr6_4 exon 46303904 46304081 46303904 ID=Msa0989430-mRNA-1:exon:10380;Parent=Msa0989430-mRNA-1
chr6_4 exon 46304954 46305097 46304954 ID=Msa0989430-mRNA-1:exon:10381;Parent=Msa0989430-mRNA-1
chr6_4 exon 46305539 46305691 46305539 ID=Msa0989430-mRNA-1:exon:10382;Parent=Msa0989430-mRNA-1
chr6_4 CDS 46302526 46302529 46302526 ID=Msa0989430-mRNA-1:cds;Parent=Msa0989430-mRNA-1
chr6_4 CDS 46303185 46303371 46303185 ID=Msa0989430-mRNA-1:cds;Parent=Msa0989430-mRNA-1
chr6_4 CDS 46303904 46304081 46303904 ID=Msa0989430-mRNA-1:cds;Parent=Msa0989430-mRNA-1
chr6_4 CDS 46304954 46305097 46304954 ID=Msa0989430-mRNA-1:cds;Parent=Msa0989430-mRNA-1
chr6_4 CDS 46305539 46305691 46305539 ID=Msa0989430-mRNA-1:cds;Parent=Msa0989430-mRNA-1
Gene Sequence

>Msa0989430

ATGGCTATATACAAAGTGATGTTGAGATATATCGATTCACTTAATCATCTGAATTATCACGTTTCATTTCTTTCTGTTGCTGCACTGCAGGAACATTTGTTAATAGTATGTGAGCTACTCAAAGCCAACTTATACGAGTTTCATAAATTCAACAGAGAATCAGGAGGGGAAGTGTACTTCACAATGCCAAGCCGATGTGAGGTGAAGGTCATTGATCATGGAAGTAGTTGTTTTGAGACAGATCACCTTTGCTCATATGTTCAGTCTAGGTCCTATCGTGCTCCCGAGGTTATTCTCGGGCTTTCATATGACAAGAAGATTGATATCTGGTCCCTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATGTCTTATTTCAAAATGATTCCCCGGCAACATTACTTGCAAGGGTGATCGGGATCATCGGTCCAATTGGTCAAAGTATGCTAGCAAAAGGACGGGATACCTATAAGTACTTCACAAAAAATCATATGCTTTATGAGAGGAATCAGACATCTTTGAGGCATAGATTACCGATGGGGGCCCAAGGCTTCATTGACTTCGTTGCTCATTTGCTCGAGGTTAACCCGAAGAAGCGACCTTCTGCATCTGAAGCTCTAAAGCACCCCTGGTTATCATACCCTTACGAACCGATATCATCTTGA
Protein sequence

>Msa0989430

MAIYKVMLRYIDSLNHLNYHVSFLSVAALQEHLLIVCELLKANLYEFHKFNRESGGEVYFTMPSRCEVKVIDHGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIGQSMLAKGRDTYKYFTKNHMLYERNQTSLRHRLPMGAQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS*